17-03-17 20:37:12.248 -07 000000610 INF: =================== Cycle #41 ===================
17-03-17 20:37:12.248 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 20:37:12.248 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8330 mm, delta = 0.5476 mm
17-03-17 20:37:12.248 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:37:12.248 -07 000000482 INF: FPGA: Recv YRDPOS 153259
17-03-17 20:37:12.258 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:37:12.258 -07 000000610 INF: Y Motor: Encoder = 153259 = motor step 119733.6 = 74.8335 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:37:12.258 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 20:37:12.258 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 20:37:12.258 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 20:37:12.368 -07 000000482 INF: FPGA: Recv YMVTO 154378 870
17-03-17 20:37:12.368 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 116 ms overall
17-03-17 20:37:12.368 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 20:37:12.378 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 875 steps, but required 870 steps (0.544 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 20:37:12.378 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.720 mm/sec
17-03-17 20:37:15.378 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:37:15.378 -07 000000576 INF: FPGA: Recv YRDPOS 154380
17-03-17 20:37:15.388 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:37:15.388 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:37:15.398 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:37:15.398 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 20:37:15.398 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3152 ms
17-03-17 20:37:15.408 -07 000000610 INF: =================== Cycle #41, Flow Cell Temp 60° ===================
17-03-17 20:37:15.408 -07 000000610 INF: =================== Cycle #41, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 20:37:15.408 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 20:37:15.408 -07 000000431 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:37:15.418 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:37:15.418 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:37:15.418 -07 000000478 INF: FPGA: Recv TEC2EN 
17-03-17 20:37:15.428 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:15.428 -07 000000610 INF: =================== Cycle #41, Flow Cell Temp 60° ===================
17-03-17 20:37:15.428 -07 000000610 INF: =================== Cycle #41 ===================
17-03-17 20:37:15.428 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:37:15.428 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:37:15.458 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:37:15.458 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 20:37:15.458 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:37:15.758 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:37:15.778 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:37:15.778 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:37:15.828 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:37:15.848 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:37:15.848 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:37:15.948 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3) ===================
17-03-17 20:37:15.948 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:37:15.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:37:15.978 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:37:15.978 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:37:15.978 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:37:15.988 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.996267,
17-03-17 20:37:16.108 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:37:16.148 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:37:16.798 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:37:16.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:37:19.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:19.308 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:37:19.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:19.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:37:20.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:20.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:37:20.208 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:37:20.208 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3) ===================
17-03-17 20:37:20.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:37:20.368 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:37:20.368 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:37:20.498 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:37:20.528 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:37:20.528 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:37:20.528 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:37:20.658 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:37:20.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:37:21.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:21.148 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:37:21.148 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:37:21.148 -07 000000610 INF: =================== Cycle #41 ===================
17-03-17 20:37:21.348 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.955391,
17-03-17 20:37:21.798 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:37:21.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=578, R2=599, Total=1177. Warn if over 250 bubbles per interval.
17-03-17 20:37:22.368 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 20:37:22.368 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 20:37:22.368 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:37:22.388 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:37:22.388 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 20:37:22.388 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 20:37:22.528 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:37:22.548 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 20:37:22.548 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 20:37:22.598 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:37:22.618 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:37:22.618 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:37:22.718 -07 000000610 INF: =================== Cycle #41, Pumping Reagent CMS (4) ===================
17-03-17 20:37:22.718 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:37:22.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:37:22.748 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:37:22.748 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:37:22.748 -07 000000610 INF: =================== Cycle #41, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 20:37:22.878 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:37:22.918 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:37:24.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:24.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:37:24.808 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:24.838 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:37:24.838 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 20:37:24.838 -07 000000610 INF: =================== Cycle #41, Pumping Reagent CMS (4) ===================
17-03-17 20:37:24.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:37:24.998 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:37:24.998 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:37:25.128 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:37:25.158 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:37:25.158 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:37:25.158 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:37:25.288 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:37:25.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:37:25.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:25.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:37:25.778 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:37:25.778 -07 000000610 INF: =================== Cycle #41 ===================
17-03-17 20:37:26.708 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.985358,
17-03-17 20:37:26.808 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 20:37:26.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=579, R2=599, Total=1178. Warn if over 250 bubbles per interval.
17-03-17 20:37:26.998 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 20:37:26.998 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:37:26.998 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:37:27.018 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:37:27.018 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 20:37:27.018 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 20:37:27.168 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:37:27.188 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 20:37:27.188 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 20:37:27.238 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:37:27.258 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:37:27.258 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:37:27.358 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3) ===================
17-03-17 20:37:27.358 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:37:27.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:37:27.388 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:37:27.388 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:37:27.388 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:37:27.518 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:37:27.558 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:37:28.428 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:28.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:37:28.458 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:37:28.458 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3) ===================
17-03-17 20:37:28.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:37:28.618 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:37:28.618 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:37:28.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:37:28.778 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:37:28.778 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:37:28.778 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:37:28.908 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:37:28.938 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:37:29.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:29.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:37:29.398 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:37:29.398 -07 000000610 INF: =================== Cycle #41 ===================
17-03-17 20:37:29.398 -07 000000012 INF: WaitCommand(10000) start
17-03-17 20:37:29.398 -07 000000433 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:37:29.398 -07 000000433 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:37:30.618 -07 000000433 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:37:30.618 -07 000000433 INF: LanePump: Xmit /1?\r
17-03-17 20:37:30.648 -07 000000433 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:37:30.648 -07 000000433 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:37:30.778 -07 000000433 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:37:30.818 -07 000000433 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:37:31.798 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 20:37:31.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=580, R2=601, Total=1181. Warn if over 250 bubbles per interval.
17-03-17 20:37:32.068 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.003063,
17-03-17 20:37:32.348 -07 000000433 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:32.378 -07 000000433 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:37:32.798 -07 000000433 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:32.828 -07 000000433 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:37:32.828 -07 000000433 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:37:32.828 -07 000000433 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:37:32.828 -07 000000433 INF: ===================  ===================
17-03-17 20:37:36.798 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:37:36.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=580, R2=601, Total=1181. Warn if over 250 bubbles per interval.
17-03-17 20:37:37.428 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.026244,
17-03-17 20:37:39.408 -07 000000012 INF: WaitCommand(10000) end
17-03-17 20:37:39.408 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3) ===================
17-03-17 20:37:39.408 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 20:37:39.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:37:39.448 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:37:39.448 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:37:39.448 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:37:39.578 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 20:37:39.618 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:37:41.798 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:37:41.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=580, R2=601, Total=1181. Warn if over 250 bubbles per interval.
17-03-17 20:37:42.788 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.041198,
17-03-17 20:37:45.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:45.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:37:46.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:46.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:37:46.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:46.678 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:37:46.798 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 20:37:46.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=582, R2=602, Total=1184. Warn if over 250 bubbles per interval.
17-03-17 20:37:47.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:47.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:37:47.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:47.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:37:47.578 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 20:37:47.578 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3) ===================
17-03-17 20:37:47.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:37:47.738 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:37:47.738 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:37:47.868 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:37:47.898 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:37:47.898 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:37:47.898 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:37:48.028 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:37:48.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:37:48.148 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.02213,
17-03-17 20:37:48.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:48.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:37:48.518 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:37:48.518 -07 000000610 INF: =================== Cycle #41 ===================
17-03-17 20:37:49.738 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:37:49.738 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 20:37:49.738 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:37:49.758 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:37:49.758 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 20:37:49.758 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 20:37:49.968 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:37:49.988 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 20:37:49.988 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 20:37:50.038 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:37:50.058 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:37:50.058 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:37:50.158 -07 000000610 INF: =================== Cycle #41, Pumping Reagent IMT (1) ===================
17-03-17 20:37:50.158 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:37:50.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:37:50.188 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:37:50.188 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:37:50.188 -07 000000610 INF: =================== Cycle #41, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 20:37:50.318 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:37:50.358 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:37:51.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:51.798 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 20:37:51.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=582, R2=603, Total=1185. Warn if over 250 bubbles per interval.
17-03-17 20:37:51.828 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:37:52.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:52.278 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:37:52.278 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:37:52.278 -07 000000610 INF: =================== Cycle #41, Pumping Reagent IMT (1) ===================
17-03-17 20:37:52.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:37:52.438 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:37:52.438 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:37:52.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:37:52.598 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:37:52.598 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:37:52.598 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:37:52.728 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:37:52.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:37:53.188 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:53.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:37:53.218 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:37:53.218 -07 000000610 INF: =================== Cycle #41 ===================
17-03-17 20:37:53.508 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.009895,
17-03-17 20:37:54.438 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:37:54.438 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:37:54.438 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:37:54.458 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:37:54.458 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 20:37:54.458 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:37:54.688 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:37:54.708 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 20:37:54.708 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 20:37:54.758 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:37:54.778 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:37:54.778 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:37:54.878 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3) ===================
17-03-17 20:37:54.878 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:37:54.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:37:54.908 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:37:54.908 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:37:54.908 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:37:55.038 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:37:55.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:37:55.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:55.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:37:55.978 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:37:55.978 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3) ===================
17-03-17 20:37:56.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:37:56.138 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:37:56.138 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:37:56.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:37:56.298 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:37:56.298 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:37:56.298 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:37:56.428 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:37:56.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:37:56.798 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 20:37:56.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=584, R2=604, Total=1188. Warn if over 250 bubbles per interval.
17-03-17 20:37:56.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:37:56.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:37:56.918 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:37:56.918 -07 000000610 INF: =================== Cycle #41 ===================
17-03-17 20:37:56.918 -07 000000610 INF: =================== Cycle #41, Flow Cell Temp 65° ===================
17-03-17 20:37:56.918 -07 000000610 INF: =================== Cycle #41, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 20:37:56.918 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 20:37:56.918 -07 000000431 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:37:56.928 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:37:56.928 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:37:56.928 -07 000000431 INF: FPGA: Recv TEC2EN 
17-03-17 20:37:56.938 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:37:56.938 -07 000000610 INF: =================== Cycle #41, Flow Cell Temp 65° ===================
17-03-17 20:37:56.938 -07 000000610 INF: =================== Cycle #41 ===================
17-03-17 20:37:56.938 -07 000000610 INF: WaitCommand(30000) start
17-03-17 20:37:58.868 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.005817,
17-03-17 20:38:01.798 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 20:38:01.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=584, R2=605, Total=1189. Warn if over 250 bubbles per interval.
17-03-17 20:38:04.228 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.003063,
17-03-17 20:38:06.798 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:38:06.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=584, R2=605, Total=1189. Warn if over 250 bubbles per interval.
17-03-17 20:38:09.588 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.009895,
17-03-17 20:38:11.798 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:38:11.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=584, R2=605, Total=1189. Warn if over 250 bubbles per interval.
17-03-17 20:38:14.948 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.983999,
17-03-17 20:38:16.798 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:38:16.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=584, R2=605, Total=1189. Warn if over 250 bubbles per interval.
17-03-17 20:38:20.308 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.989471,
17-03-17 20:38:21.798 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:38:21.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=584, R2=605, Total=1189. Warn if over 250 bubbles per interval.
17-03-17 20:38:25.668 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.02213,
17-03-17 20:38:26.798 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:38:26.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=584, R2=605, Total=1189. Warn if over 250 bubbles per interval.
17-03-17 20:38:26.948 -07 000000610 INF: WaitCommand(30000) end
17-03-17 20:38:26.948 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3) ===================
17-03-17 20:38:26.948 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 20:38:27.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:38:27.078 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:38:27.078 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:38:27.078 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:38:27.208 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 20:38:27.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:38:27.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:38:27.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:38:27.818 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 20:38:27.818 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3) ===================
17-03-17 20:38:27.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:38:27.978 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:38:27.978 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:38:28.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:38:28.138 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:38:28.138 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:38:28.138 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:38:28.268 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:38:28.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:38:28.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:38:28.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:38:28.758 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:38:28.758 -07 000000610 INF: =================== Cycle #41 ===================
17-03-17 20:38:28.758 -07 000000458 INF: WaitCommand(30000) start
17-03-17 20:38:28.758 -07 000000551 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:38:28.758 -07 000000551 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:38:29.978 -07 000000551 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:38:29.978 -07 000000551 INF: LanePump: Xmit /1?\r
17-03-17 20:38:30.008 -07 000000551 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:38:30.008 -07 000000551 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:38:30.138 -07 000000551 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:38:30.178 -07 000000551 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:38:31.028 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.969015,
17-03-17 20:38:31.798 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:38:31.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=584, R2=605, Total=1189. Warn if over 250 bubbles per interval.
17-03-17 20:38:32.518 -07 000000551 INF: LanePump: Xmit /1Q\r
17-03-17 20:38:32.548 -07 000000551 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:38:32.968 -07 000000551 INF: LanePump: Xmit /1Q\r
17-03-17 20:38:32.998 -07 000000551 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:38:32.998 -07 000000551 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 20:38:32.998 -07 000000551 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:38:32.998 -07 000000551 INF: ===================  ===================
17-03-17 20:38:36.388 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.041198,
17-03-17 20:38:36.798 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:38:36.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=584, R2=605, Total=1189. Warn if over 250 bubbles per interval.
17-03-17 20:38:41.748 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.009895,
17-03-17 20:38:41.798 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:38:41.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=584, R2=605, Total=1189. Warn if over 250 bubbles per interval.
17-03-17 20:38:46.798 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:38:46.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=584, R2=605, Total=1189. Warn if over 250 bubbles per interval.
17-03-17 20:38:47.108 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.011254,
17-03-17 20:38:51.798 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:38:51.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=584, R2=605, Total=1189. Warn if over 250 bubbles per interval.
17-03-17 20:38:52.468 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.020806,
17-03-17 20:38:56.798 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:38:56.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=584, R2=605, Total=1189. Warn if over 250 bubbles per interval.
17-03-17 20:38:57.828 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.99219,
17-03-17 20:38:58.768 -07 000000458 INF: WaitCommand(30000) end
17-03-17 20:38:58.768 -07 000000610 INF: =================== Cycle #41, Flow Cell Temp 22° ===================
17-03-17 20:38:58.768 -07 000000610 INF: =================== Cycle #41, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 20:38:58.768 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 20:38:58.768 -07 000000459 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:38:58.778 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:38:58.778 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:38:58.778 -07 000000433 INF: FPGA: Recv TEC2EN 
17-03-17 20:38:58.788 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:38:58.788 -07 000000610 INF: =================== Cycle #41, Flow Cell Temp 22° ===================
17-03-17 20:38:58.788 -07 000000610 INF: =================== Cycle #41 ===================
17-03-17 20:38:58.788 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3) ===================
17-03-17 20:38:58.788 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:38:58.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:38:58.828 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:38:58.828 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:38:58.828 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:38:58.958 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:38:58.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:39:01.798 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 20:39:01.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:39:02.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:39:02.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:39:02.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:39:02.608 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:39:03.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:39:03.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:39:03.058 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:39:03.058 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3) ===================
17-03-17 20:39:03.188 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:39:03.188 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.001704,
17-03-17 20:39:03.218 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:39:03.218 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:39:03.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:39:03.378 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:39:03.378 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:39:03.378 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:39:03.508 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:39:03.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:39:03.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:39:03.998 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:39:03.998 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:39:03.998 -07 000000610 INF: =================== Cycle #41 ===================
17-03-17 20:39:05.218 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 20:39:05.218 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 20:39:05.218 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:39:05.238 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:39:05.238 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 20:39:05.238 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 20:39:05.388 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:39:05.408 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:39:05.408 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:39:05.458 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:39:05.478 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:39:05.478 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:39:05.578 -07 000000610 INF: =================== Cycle #41, Pumping Reagent USM (2) ===================
17-03-17 20:39:05.578 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:39:05.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:39:05.608 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:39:05.608 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:39:05.608 -07 000000610 INF: =================== Cycle #41, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 20:39:05.738 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:39:05.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:39:06.798 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:39:06.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:39:07.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:39:07.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:39:07.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:39:07.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:39:07.698 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:39:07.698 -07 000000610 INF: =================== Cycle #41, Pumping Reagent USM (2) ===================
17-03-17 20:39:07.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:39:07.858 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:39:07.858 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:39:07.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:39:08.018 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:39:08.018 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:39:08.018 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:39:08.148 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:39:08.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:39:08.548 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.018051,
17-03-17 20:39:08.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:39:08.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:39:08.638 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:39:08.638 -07 000000610 INF: =================== Cycle #41 ===================
17-03-17 20:39:09.858 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 20:39:09.858 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:39:09.858 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:39:09.878 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:39:09.878 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 20:39:09.878 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:39:10.028 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:39:10.048 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:39:10.048 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:39:10.098 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:39:10.118 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:39:10.118 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:39:10.218 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3) ===================
17-03-17 20:39:10.218 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:39:10.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:39:10.248 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:39:10.248 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:39:10.248 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:39:10.378 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:39:10.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:39:11.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:39:11.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:39:11.318 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:39:11.318 -07 000000610 INF: =================== Cycle #41, Pumping Reagent PR2 (3) ===================
17-03-17 20:39:11.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:39:11.478 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:39:11.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:39:11.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:39:11.638 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:39:11.638 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:39:11.638 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:39:11.768 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:39:11.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:39:11.808 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:39:11.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:39:12.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:39:12.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:39:12.258 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:39:12.258 -07 000000610 INF: =================== Cycle #41 ===================
17-03-17 20:39:12.258 -07 000000541 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:39:12.258 -07 000000512 INF: WaitCommand(10000) start
17-03-17 20:39:12.258 -07 000000541 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:39:13.478 -07 000000541 INF: AsyncDelayTimer waited 1214ms
17-03-17 20:39:13.478 -07 000000541 INF: LanePump: Xmit /1?\r
17-03-17 20:39:13.508 -07 000000541 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:39:13.508 -07 000000541 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:39:13.638 -07 000000541 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:39:13.678 -07 000000541 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:39:13.908 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.994908,
17-03-17 20:39:15.208 -07 000000541 INF: LanePump: Xmit /1Q\r
17-03-17 20:39:15.238 -07 000000541 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:39:15.658 -07 000000541 INF: LanePump: Xmit /1Q\r
17-03-17 20:39:15.688 -07 000000541 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:39:15.688 -07 000000541 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:39:15.688 -07 000000541 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:39:15.688 -07 000000541 INF: ===================  ===================
17-03-17 20:39:16.808 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:39:16.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:39:19.268 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.985358,
17-03-17 20:39:21.808 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:39:21.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:39:22.268 -07 000000512 INF: WaitCommand(10000) end
17-03-17 20:39:22.268 -07 000000610 INF: =================== Cycle #41, Imaging ===================
17-03-17 20:39:22.268 -07 000000610 INF: Imaging Cycle 41: ScanTilesCommand Cycle 41 time start.
17-03-17 20:39:22.278 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 20:39:22.278 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:39:22.298 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:39:22.298 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 20:39:22.298 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 20:39:22.598 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:39:22.618 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:39:22.618 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:39:22.668 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:39:22.688 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:39:22.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:39:22.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:39:22.688 -07 000000551 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 20:39:22.688 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:39:22.688 -07 000000551 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 20:39:22.698 -07 000000459 INF: FPGA: Recv EXLED1ON 
17-03-17 20:39:22.698 -07 000000551 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:39:22.698 -07 000000551 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 20:39:22.698 -07 000000512 INF: FPGA: Recv EXLED1ADCR 23096
17-03-17 20:39:22.708 -07 000000551 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:22.708 -07 000000551 INF: RedLED: Using Red data: Photodiode ADC 23096 --> 7.4 mW (old method), or 204.7 mW (new method). Difference = 197.3 mW
17-03-17 20:39:22.708 -07 000000551 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 20:39:22.708 -07 000000541 INF: FPGA: Recv EXLED1OFF 
17-03-17 20:39:22.718 -07 000000551 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:22.718 -07 000000551 INF: RedLED: LED was on for 19 ms
17-03-17 20:39:22.718 -07 000000551 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 20:39:22.718 -07 000000551 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 20:39:22.718 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:39:22.718 -07 000000551 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 20:39:22.718 -07 000000458 INF: FPGA: Recv EXLED2ON 
17-03-17 20:39:22.728 -07 000000551 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:39:22.728 -07 000000551 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:39:22.728 -07 000000512 INF: FPGA: Recv EXLED1ADCR 2101
17-03-17 20:39:22.738 -07 000000551 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:22.738 -07 000000551 INF: GreenLED: Using Green data: Photodiode ADC 2101 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.6 mW
17-03-17 20:39:22.738 -07 000000551 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 20:39:22.738 -07 000000433 INF: FPGA: Recv EXLED2OFF 
17-03-17 20:39:22.748 -07 000000551 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:22.748 -07 000000551 INF: GreenLED: LED was on for 20 ms
17-03-17 20:39:22.748 -07 000000551 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 20:39:22.748 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:39:22.748 -07 000000433 INF: FPGA: Recv EMCUR 
17-03-17 20:39:22.758 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:39:22.758 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 20:39:23.258 -07 000000541 INF: FPGA: Recv EMOUT
17-03-17 20:39:23.258 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 20:39:23.258 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 20:39:23.258 -07 000000433 INF: FPGA: Recv EMCUR 
17-03-17 20:39:23.268 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:39:23.268 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:39:23.268 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127589135943467. ------
17-03-17 20:39:23.268 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:39:23.268 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17947 mm
17-03-17 20:39:23.268 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:39:23.268 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:39:23.268 -07 000000512 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 20:39:23.268 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 39204, sync = True, waitForSettling = False)
17-03-17 20:39:23.268 -07 000000541 INF: Z Motor: Moving to -0.179464 mm, started at -0.127589 mm, distance = -51.88 um
17-03-17 20:39:23.268 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:39:23.278 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:39:23.278 -07 000000541 INF: FPGA: Xmit ZDACW 39204\n [Z Motor]
17-03-17 20:39:23.278 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:39:23.288 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:23.288 -07 000000541 INF: FPGA: 'ZDACW 39204' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:39:23.288 -07 000000382 INF: FPGA: Recv YRDPOS 154380
17-03-17 20:39:23.298 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:39:23.298 -07 000000512 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:23.298 -07 000000512 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 20:39:23.298 -07 000000512 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:39:23.298 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:39:23.308 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:39:23.308 -07 000000501 INF: FPGA: Recv ZDACR 39204
17-03-17 20:39:23.318 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:39:23.318 -07 000000541 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 20:39:23.318 -07 000000512 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:39:23.498 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:39:23.498 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 20:39:24.628 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.985358,
17-03-17 20:39:24.998 -07 000000459 INF: FPGA: Recv YMVTO 122703 24776
17-03-17 20:39:24.998 -07 000000512 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-17 20:39:24.998 -07 000000512 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:39:24.998 -07 000000512 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24776 steps (15.485 mm). Slippage = 0.017 mm (0.00%).
17-03-17 20:39:24.998 -07 000000512 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.468 mm, average velocity = 9.067 mm/sec
17-03-17 20:39:26.798 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:39:26.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:39:27.848 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:27.848 -07 000000623 INF: FPGA: Recv YRDPOS 122697
17-03-17 20:39:27.858 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:39:27.858 -07 000000512 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:27.878 -07 000000512 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:39:27.878 -07 000000512 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 20:39:27.878 -07 000000512 INF: Y Motor: Moved to 59.9106 after 4605 ms
17-03-17 20:39:27.878 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179464 mm (DAC = 39204)
17-03-17 20:39:27.878 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:27.888 -07 000000512 INF: FPGA: Recv ZSGSRD 37228
17-03-17 20:39:27.888 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:39:27.888 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:27.888 -07 000000623 INF: FPGA: Recv ZSGSRD 37229
17-03-17 20:39:27.898 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:27.898 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:27.898 -07 000000623 INF: FPGA: Recv ZSGSRD 37225
17-03-17 20:39:27.908 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:27.908 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:27.908 -07 000000623 INF: FPGA: Recv ZSGSRD 37225
17-03-17 20:39:27.918 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:27.918 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:27.918 -07 000000623 INF: FPGA: Recv ZSGSRD 37220
17-03-17 20:39:27.928 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:27.928 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:27.928 -07 000000512 INF: FPGA: Recv ZSGSRD 37226
17-03-17 20:39:27.938 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:27.938 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:27.938 -07 000000623 INF: FPGA: Recv ZSGSRD 37225
17-03-17 20:39:27.948 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:27.948 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:27.948 -07 000000512 INF: FPGA: Recv ZSGSRD 37222
17-03-17 20:39:27.958 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:27.958 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:27.958 -07 000000501 INF: FPGA: Recv ZSGSRD 37231
17-03-17 20:39:27.968 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:27.968 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:27.968 -07 000000623 INF: FPGA: Recv ZSGSRD 37223
17-03-17 20:39:27.978 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:27.978 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:39:27.978 -07 000000501 INF: FPGA: Recv ZPIEZORD 33709
17-03-17 20:39:27.988 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:27.988 -07 000000551 INF: Z Motor: Piezo is near 52.0 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.982 V. Piezo Error = -7.8 V.
17-03-17 20:39:27.988 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37225 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37225 (-178.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37220 (-178.5 uncal um), Max = 37231 (-178.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:39:27.988 -07 000000551 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37225, posNoise = 6, negNoise = 5
17-03-17 20:39:27.988 -07 000000551 INF: Z Motor: After move to -0.179464, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:39:27.988 -07 000000551 INF: Z Motor: Settle wait time = 4608 ms, measure time = 102 ms (allowed 150 ms), total time = 4710 ms
17-03-17 20:39:27.988 -07 000000551 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:39:28.038 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4763 ms
17-03-17 20:39:28.038 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:39:28.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:39:28.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:39:28.038 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:39:28.038 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:39:28.038 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:39:28.038 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:39:28.048 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:39:28.048 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:39:28.068 -07 000000501 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-17 20:39:28.068 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:39:28.068 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:39:28.068 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:39:28.088 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:39:28.088 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 20:39:28.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:39:28.128 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:39:28.328 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:39:28.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:39:28.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:39:28.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1178569712, 0x0, 559484976) start.
17-03-17 20:39:28.368 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:39:28.368 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 20:39:28.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 20:39:28.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1178569712, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:39:28.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:28.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:39:28.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:39:28.568 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:39:28.568 -07 000000382 INF: Image SNR check: start
17-03-17 20:39:28.568 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:39:28.578 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:39:28.578 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:39:28.578 -07 000000382 INF: Image SNR check: pass  [peak (Max-Min)=64.56]
17-03-17 20:39:28.578 -07 000000382 INF: Autofocus start
17-03-17 20:39:28.578 -07 000000382 INF: MeasureProfile start
17-03-17 20:39:28.598 -07 000000382 INF: MeasureProfile done
17-03-17 20:39:28.598 -07 000000382 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:39:28.598 -07 000000382 INF: Autofocus finished
17-03-17 20:39:28.778 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:39:28.778 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:39:28.778 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.179464648988187. ----------
17-03-17 20:39:28.778 -07 000000610 INF: Cycle	41	Tile	1	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:39:28.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37719, sync = True, waitForSettling = True)
17-03-17 20:39:28.788 -07 000000610 INF: Z Motor: Moving to -0.172667 mm, started at -0.179465 mm, distance = 6.80 um
17-03-17 20:39:28.788 -07 000000610 INF: FPGA: Xmit ZDACW 37719\n [Z Motor]
17-03-17 20:39:28.788 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:39:28.798 -07 000000610 INF: FPGA: 'ZDACW 37719' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:28.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:39:28.798 -07 000000541 INF: FPGA: Recv ZDACR 37719
17-03-17 20:39:28.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:28.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:39:28.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:28.958 -07 000000623 INF: FPGA: Recv ZSGSRD 36170
17-03-17 20:39:28.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:39:28.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:28.968 -07 000000433 INF: FPGA: Recv ZSGSRD 36173
17-03-17 20:39:28.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:28.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:28.978 -07 000000458 INF: FPGA: Recv ZSGSRD 36175
17-03-17 20:39:28.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:28.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:28.988 -07 000000512 INF: FPGA: Recv ZSGSRD 36162
17-03-17 20:39:28.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:28.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:28.998 -07 000000623 INF: FPGA: Recv ZSGSRD 36167
17-03-17 20:39:29.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:39:29.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:29.008 -07 000000458 INF: FPGA: Recv ZSGSRD 36180
17-03-17 20:39:29.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:29.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:29.018 -07 000000551 INF: FPGA: Recv ZSGSRD 36171
17-03-17 20:39:29.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:29.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:29.028 -07 000000458 INF: FPGA: Recv ZSGSRD 36165
17-03-17 20:39:29.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:29.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:29.038 -07 000000433 INF: FPGA: Recv ZSGSRD 36165
17-03-17 20:39:29.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:29.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:29.048 -07 000000541 INF: FPGA: Recv ZSGSRD 36169
17-03-17 20:39:29.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:29.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:39:29.058 -07 000000623 INF: FPGA: Recv ZPIEZORD 32316
17-03-17 20:39:29.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:29.068 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.756 V. Piezo Error = -8.5 V.
17-03-17 20:39:29.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36170 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36170 (-171.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36162 (-171.8 uncal um), Max = 36180 (-171.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:39:29.068 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36170, posNoise = 10, negNoise = 8
17-03-17 20:39:29.068 -07 000000610 INF: Z Motor: After move to -0.172667, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:39:29.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:39:29.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:39:29.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:39:29.068 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:39:29.068 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:39:29.068 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:39:29.068 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:39:29.068 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:39:29.068 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:39:29.068 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:39:29.068 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:39:29.068 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:39:29.068 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:39:29.068 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:39:29.078 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:39:29.088 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:39:29.088 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:39:29.088 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 20:39:29.098 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:39:29.098 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:39:29.098 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:39:29.108 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 20:39:29.108 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 43 ms.
17-03-17 20:39:29.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 37896 150\n [Camera]
17-03-17 20:39:29.318 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:39:29.728 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:39:29.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:39:29.738 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:39:29.738 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:39:29.738 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 20:39:29.738 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:39:29.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:39:29.738 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:39:29.738 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:39:29.738 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 20:39:29.928 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37896 803
17-03-17 20:39:29.988 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.986717,
17-03-17 20:39:30.078 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:39:30.138 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:39:30.138 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:39:30.138 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:30.138 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:39:30.138 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:39:30.138 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:30.138 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:39:30.138 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:39:30.148 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:39:30.148 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:39:30.278 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:39:30.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:39:30.278 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:39:30.408 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:39:30.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:39:30.408 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:39:30.418 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:39:30.418 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:39:30.428 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:39:30.428 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:39:30.468 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-17 20:39:30.468 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:39:30.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 37896 150' command took 2 ms to send, 1345 ms to get response, and 1355 ms overall
17-03-17 20:39:30.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:39:30.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172687105178629. ------
17-03-17 20:39:30.478 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:39:30.478 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17909 mm
17-03-17 20:39:30.478 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:39:30.818 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:39:30.818 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:39:30.818 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:39:30.818 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:30.818 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:39:30.818 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:30.828 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:39:30.828 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 548 ms.
17-03-17 20:39:30.828 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:39:30.828 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 20:39:30.838 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:39:30.838 -07 000000512 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 20:39:30.838 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:30.858 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:39:30.858 -07 000000501 INF: FPGA: Recv YRDPOS 122697
17-03-17 20:39:30.858 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 370 ms to get response, and 380 ms overall
17-03-17 20:39:30.858 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:39:30.858 -07 000000512 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:30.858 -07 000000512 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:39:30.858 -07 000000512 INF: Y Motor: Moving 1331 steps2
17-03-17 20:39:30.858 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:39:30.858 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 39123, sync = True, waitForSettling = False)
17-03-17 20:39:30.858 -07 000000501 INF: Z Motor: Moving to -0.179094 mm, started at -0.172687 mm, distance = -6.41 um
17-03-17 20:39:30.868 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:39:30.878 -07 000000501 INF: FPGA: Xmit ZDACW 39123\n [Z Motor]
17-03-17 20:39:31.548 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:39:31.548 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:39:31.548 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 20:39:31.548 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 681 ms to get response, and 689 ms overall
17-03-17 20:39:31.548 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 670 ms to get response, and 689 ms overall
17-03-17 20:39:31.548 -07 000000501 INF: FPGA: 'ZDACW 39123' command took 0 ms to send, 660 ms to get response, and 687 ms overall
17-03-17 20:39:31.548 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:39:31.548 -07 000000458 INF: FPGA: Recv ZDACR 39123
17-03-17 20:39:31.558 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:39:31.558 -07 000000501 INF: Z Motor: MoveAbsStepped took 697 ms (did NOT wait for settling yet))
17-03-17 20:39:31.578 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:31.578 -07 000000433 INF: FPGA: Recv YRDPOS 124380
17-03-17 20:39:31.588 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:39:31.588 -07 000000512 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:31.588 -07 000000512 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 20:39:31.588 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 689 ms, distance = 0.832 mm, average velocity = 1.207 mm/sec
17-03-17 20:39:31.798 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:39:31.798 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:39:32.538 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:32.538 -07 000000433 INF: FPGA: Recv YRDPOS 124380
17-03-17 20:39:32.548 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:39:32.548 -07 000000512 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:32.568 -07 000000512 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:39:32.568 -07 000000512 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:39:32.568 -07 000000512 INF: Y Motor: Moved to 60.7324 after 1729 ms (table move)
17-03-17 20:39:32.568 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179094 mm (DAC = 39123)
17-03-17 20:39:32.568 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:32.568 -07 000000458 INF: FPGA: Recv ZSGSRD 37165
17-03-17 20:39:32.578 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:39:32.578 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:32.578 -07 000000433 INF: FPGA: Recv ZSGSRD 37171
17-03-17 20:39:32.588 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:32.588 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:32.588 -07 000000512 INF: FPGA: Recv ZSGSRD 37168
17-03-17 20:39:32.598 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:32.598 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:32.598 -07 000000512 INF: FPGA: Recv ZSGSRD 37168
17-03-17 20:39:32.608 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:32.608 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:32.608 -07 000000501 INF: FPGA: Recv ZSGSRD 37173
17-03-17 20:39:32.618 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:32.618 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:32.618 -07 000000512 INF: FPGA: Recv ZSGSRD 37168
17-03-17 20:39:32.628 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:32.628 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:32.628 -07 000000501 INF: FPGA: Recv ZSGSRD 37160
17-03-17 20:39:32.638 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:32.638 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:32.638 -07 000000458 INF: FPGA: Recv ZSGSRD 37169
17-03-17 20:39:32.648 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:32.648 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:32.648 -07 000000458 INF: FPGA: Recv ZSGSRD 37172
17-03-17 20:39:32.658 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:32.658 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:32.658 -07 000000433 INF: FPGA: Recv ZSGSRD 37168
17-03-17 20:39:32.668 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:32.668 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:39:32.668 -07 000000458 INF: FPGA: Recv ZPIEZORD 33610
17-03-17 20:39:32.678 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:32.678 -07 000000382 INF: Z Motor: Piezo is near 51.8 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.970 V. Piezo Error = -7.9 V.
17-03-17 20:39:32.678 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.1 um, Read 10 ADC samples: Avg = 37168 (-178.2 uncal um), Error = 0.9 uncal um, Median = 37168 (-178.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37160 (-178.2 uncal um), Max = 37173 (-178.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:39:32.678 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37168, posNoise = 5, negNoise = 8
17-03-17 20:39:32.678 -07 000000382 INF: Z Motor: After move to -0.179094, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:39:32.678 -07 000000382 INF: Z Motor: Settle wait time = 1713 ms, measure time = 104 ms (allowed 150 ms), total time = 1817 ms
17-03-17 20:39:32.678 -07 000000382 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:39:32.728 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2249 ms
17-03-17 20:39:32.728 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:39:32.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:39:32.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:39:32.728 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:39:32.728 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:39:32.728 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:39:32.728 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:39:32.728 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:39:32.728 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:39:32.738 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:39:32.738 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:39:32.738 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 20:39:32.738 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 20:39:32.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:39:32.788 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:39:32.988 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:39:32.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:39:32.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:39:32.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617741808, 0x0, 559484976) start.
17-03-17 20:39:33.028 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:39:33.028 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 20:39:33.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:39:33.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617741808, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:39:33.118 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:33.118 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:39:33.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:39:33.228 -07 000000623 INF: Autofocus start
17-03-17 20:39:33.228 -07 000000623 INF: MeasureProfile start
17-03-17 20:39:33.228 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:39:33.228 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:39:33.238 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:39:33.238 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:39:33.238 -07 000000623 INF: MeasureProfile done
17-03-17 20:39:33.238 -07 000000623 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 20:39:33.238 -07 000000623 INF: Autofocus finished
17-03-17 20:39:33.438 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:39:33.438 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:39:33.438 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.179098468896106. ----------
17-03-17 20:39:33.548 -07 000000610 INF: Cycle	41	Tile	2	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:39:33.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37603, sync = True, waitForSettling = True)
17-03-17 20:39:33.548 -07 000000610 INF: Z Motor: Moving to -0.172136 mm, started at -0.179098 mm, distance = 6.96 um
17-03-17 20:39:33.548 -07 000000610 INF: FPGA: Xmit ZDACW 37603\n [Z Motor]
17-03-17 20:39:33.548 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:39:33.558 -07 000000610 INF: FPGA: 'ZDACW 37603' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:39:33.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:39:33.558 -07 000000551 INF: FPGA: Recv ZDACR 37603
17-03-17 20:39:33.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:33.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:39:33.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:33.718 -07 000000459 INF: FPGA: Recv ZSGSRD 36085
17-03-17 20:39:33.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:39:33.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:33.728 -07 000000433 INF: FPGA: Recv ZSGSRD 36089
17-03-17 20:39:33.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:33.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:33.738 -07 000000382 INF: FPGA: Recv ZSGSRD 36086
17-03-17 20:39:33.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:33.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:33.748 -07 000000623 INF: FPGA: Recv ZSGSRD 36083
17-03-17 20:39:33.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:33.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:33.758 -07 000000382 INF: FPGA: Recv ZSGSRD 36085
17-03-17 20:39:33.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:33.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:33.768 -07 000000459 INF: FPGA: Recv ZSGSRD 36080
17-03-17 20:39:33.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:33.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:33.778 -07 000000459 INF: FPGA: Recv ZSGSRD 36084
17-03-17 20:39:33.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:33.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:33.788 -07 000000551 INF: FPGA: Recv ZSGSRD 36092
17-03-17 20:39:33.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:33.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:33.798 -07 000000459 INF: FPGA: Recv ZSGSRD 36077
17-03-17 20:39:33.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:33.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:33.808 -07 000000382 INF: FPGA: Recv ZSGSRD 36091
17-03-17 20:39:33.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:33.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:39:33.818 -07 000000541 INF: FPGA: Recv ZPIEZORD 32167
17-03-17 20:39:33.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:33.828 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.738 V. Piezo Error = -8.7 V.
17-03-17 20:39:33.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36085 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36085 (-171.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36077 (-171.2 uncal um), Max = 36092 (-171.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:39:33.828 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36085, posNoise = 7, negNoise = 8
17-03-17 20:39:33.828 -07 000000610 INF: Z Motor: After move to -0.172136, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:39:33.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 20:39:33.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:39:33.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:39:33.828 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:39:33.828 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:39:33.828 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:39:33.828 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:39:33.828 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:39:33.828 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:39:33.828 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:39:33.828 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:39:33.828 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:39:33.828 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:39:33.838 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:39:33.838 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:39:33.838 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:39:33.838 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:39:33.848 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:39:33.848 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:39:33.848 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:39:33.848 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:39:33.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 37780 150\n [Camera]
17-03-17 20:39:34.058 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:39:34.468 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:39:34.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:39:34.468 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:39:34.478 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:39:34.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:39:34.478 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:39:34.478 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:39:34.478 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:39:34.478 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:39:34.478 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:39:34.668 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37780 803
17-03-17 20:39:34.818 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:39:34.858 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:39:34.858 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:39:34.858 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:34.868 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:39:34.868 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:39:34.868 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:39:34.868 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:34.868 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:39:34.868 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:39:34.868 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:39:35.018 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:39:35.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:39:35.018 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:39:35.018 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:39:35.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:39:35.018 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:39:35.028 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:39:35.028 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 20:39:35.028 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:39:35.028 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:39:35.208 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-17 20:39:35.208 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:39:35.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 37780 150' command took 2 ms to send, 1346 ms to get response, and 1355 ms overall
17-03-17 20:39:35.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:39:35.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.172141047146579. ------
17-03-17 20:39:35.218 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17875 mm
17-03-17 20:39:35.218 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:39:35.218 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:39:35.218 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:39:35.218 -07 000000501 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 20:39:35.218 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:39:35.218 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 39048, sync = True, waitForSettling = False)
17-03-17 20:39:35.218 -07 000000512 INF: Z Motor: Moving to -0.178750 mm, started at -0.172141 mm, distance = -6.61 um
17-03-17 20:39:35.228 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:35.228 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:39:35.228 -07 000000551 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:39:35.238 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:39:35.238 -07 000000501 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:35.238 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:39:35.238 -07 000000501 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:39:35.238 -07 000000501 INF: Y Motor: Moving 1344 steps-21
17-03-17 20:39:35.248 -07 000000512 INF: FPGA: Xmit ZDACW 39048\n [Z Motor]
17-03-17 20:39:35.248 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:39:35.258 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:39:35.258 -07 000000512 INF: FPGA: 'ZDACW 39048' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 20:39:35.268 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:39:35.268 -07 000000478 INF: FPGA: Recv ZDACR 39048
17-03-17 20:39:35.278 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:39:35.278 -07 000000512 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 20:39:35.348 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.012614,
17-03-17 20:39:35.418 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:39:35.418 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:39:35.418 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:35.418 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 20:39:35.418 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:39:35.418 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:35.428 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:39:35.428 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:39:35.428 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:39:35.428 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:39:35.438 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:39:35.438 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:39:35.628 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 20:39:35.628 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:39:35.668 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:35.668 -07 000000429 INF: FPGA: Recv YRDPOS 126081
17-03-17 20:39:35.678 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:39:35.678 -07 000000501 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:35.678 -07 000000501 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:39:35.678 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.840 mm, average velocity = 2.127 mm/sec
17-03-17 20:39:36.628 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:36.628 -07 000000429 INF: FPGA: Recv YRDPOS 126081
17-03-17 20:39:36.638 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:39:36.638 -07 000000501 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:36.658 -07 000000501 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:39:36.658 -07 000000501 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:39:36.658 -07 000000501 INF: Y Motor: Moved to 61.5630 after 1439 ms (table move)
17-03-17 20:39:36.658 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178750 mm (DAC = 39048)
17-03-17 20:39:36.658 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:36.658 -07 000000429 INF: FPGA: Recv ZSGSRD 37120
17-03-17 20:39:36.668 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:39:36.668 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:36.668 -07 000000429 INF: FPGA: Recv ZSGSRD 37114
17-03-17 20:39:36.678 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:36.678 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:36.678 -07 000000501 INF: FPGA: Recv ZSGSRD 37116
17-03-17 20:39:36.688 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:36.688 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:36.688 -07 000000541 INF: FPGA: Recv ZSGSRD 37112
17-03-17 20:39:36.698 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:36.698 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:36.698 -07 000000501 INF: FPGA: Recv ZSGSRD 37124
17-03-17 20:39:36.708 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:36.708 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:36.708 -07 000000501 INF: FPGA: Recv ZSGSRD 37106
17-03-17 20:39:36.718 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:36.718 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:36.718 -07 000000623 INF: FPGA: Recv ZSGSRD 37117
17-03-17 20:39:36.728 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:36.728 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:36.728 -07 000000429 INF: FPGA: Recv ZSGSRD 37119
17-03-17 20:39:36.738 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:36.738 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:36.738 -07 000000541 INF: FPGA: Recv ZSGSRD 37107
17-03-17 20:39:36.748 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:39:36.748 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:36.748 -07 000000501 INF: FPGA: Recv ZSGSRD 37114
17-03-17 20:39:36.758 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:36.758 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:39:36.758 -07 000000623 INF: FPGA: Recv ZPIEZORD 33558
17-03-17 20:39:36.768 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:36.768 -07 000000458 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.958 V. Piezo Error = -7.9 V.
17-03-17 20:39:36.768 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.8 um, Read 10 ADC samples: Avg = 37115 (-177.9 uncal um), Error = 0.9 uncal um, Median = 37115 (-177.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 37106 (-177.8 uncal um), Max = 37124 (-177.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:39:36.768 -07 000000458 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37115, posNoise = 9, negNoise = 9
17-03-17 20:39:36.768 -07 000000458 INF: Z Motor: After move to -0.178750, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:39:36.768 -07 000000458 INF: Z Motor: Settle wait time = 1439 ms, measure time = 105 ms (allowed 150 ms), total time = 1544 ms
17-03-17 20:39:36.768 -07 000000458 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:39:36.798 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:39:36.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:39:36.818 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 20:39:36.818 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:39:36.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:39:36.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:39:36.818 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:39:36.818 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:39:36.818 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:39:36.818 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:39:36.818 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:39:36.818 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:39:36.828 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:39:36.828 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:39:36.828 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:39:36.828 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:39:36.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:39:36.878 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:39:37.078 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:39:37.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:39:37.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:39:37.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199916248, 0x0, 559484976) start.
17-03-17 20:39:37.118 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:39:37.118 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 20:39:37.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:39:37.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2199916248, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:39:37.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:37.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:39:37.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 20:39:37.218 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:39:37.218 -07 000000458 INF: Autofocus start
17-03-17 20:39:37.218 -07 000000458 INF: MeasureProfile start
17-03-17 20:39:37.218 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:39:37.228 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:39:37.228 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:39:37.238 -07 000000458 INF: MeasureProfile done
17-03-17 20:39:37.238 -07 000000458 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 20:39:37.238 -07 000000458 INF: Autofocus finished
17-03-17 20:39:37.428 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:39:37.428 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 20:39:37.428 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.178757985652593. ----------
17-03-17 20:39:37.428 -07 000000610 INF: Cycle	41	Tile	3	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:39:37.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37528, sync = True, waitForSettling = True)
17-03-17 20:39:37.438 -07 000000610 INF: Z Motor: Moving to -0.171792 mm, started at -0.178758 mm, distance = 6.97 um
17-03-17 20:39:37.438 -07 000000610 INF: FPGA: Xmit ZDACW 37528\n [Z Motor]
17-03-17 20:39:37.438 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:39:37.448 -07 000000610 INF: FPGA: 'ZDACW 37528' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:39:37.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:39:37.448 -07 000000429 INF: FPGA: Recv ZDACR 37528
17-03-17 20:39:37.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:37.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:39:37.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:37.608 -07 000000541 INF: FPGA: Recv ZSGSRD 36030
17-03-17 20:39:37.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:39:37.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:37.618 -07 000000458 INF: FPGA: Recv ZSGSRD 36030
17-03-17 20:39:37.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:37.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:37.628 -07 000000623 INF: FPGA: Recv ZSGSRD 36030
17-03-17 20:39:37.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:37.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:37.638 -07 000000433 INF: FPGA: Recv ZSGSRD 36026
17-03-17 20:39:37.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:37.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:37.648 -07 000000429 INF: FPGA: Recv ZSGSRD 36039
17-03-17 20:39:37.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:37.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:37.658 -07 000000501 INF: FPGA: Recv ZSGSRD 36037
17-03-17 20:39:37.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:37.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:37.668 -07 000000551 INF: FPGA: Recv ZSGSRD 36027
17-03-17 20:39:37.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:37.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:37.678 -07 000000501 INF: FPGA: Recv ZSGSRD 36028
17-03-17 20:39:37.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:37.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:37.688 -07 000000627 INF: FPGA: Recv ZSGSRD 36031
17-03-17 20:39:37.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:37.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:37.698 -07 000000501 INF: FPGA: Recv ZSGSRD 36035
17-03-17 20:39:37.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:37.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:39:37.708 -07 000000551 INF: FPGA: Recv ZPIEZORD 32085
17-03-17 20:39:37.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:37.718 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.726 V. Piezo Error = -8.7 V.
17-03-17 20:39:37.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36031 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36030 (-170.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36026 (-170.9 uncal um), Max = 36039 (-171.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:39:37.718 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36031, posNoise = 8, negNoise = 5
17-03-17 20:39:37.718 -07 000000610 INF: Z Motor: After move to -0.171792, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:39:37.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:39:37.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:39:37.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:39:37.718 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:39:37.718 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:39:37.718 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:39:37.718 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:39:37.718 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:39:37.718 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:39:37.718 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:39:37.718 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:39:37.718 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:39:37.718 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:39:37.728 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:39:37.728 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:39:37.728 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:39:37.728 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:39:37.728 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:39:37.728 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:39:37.738 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:39:37.738 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:39:37.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 37704 150\n [Camera]
17-03-17 20:39:37.938 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:39:38.358 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:39:38.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:39:38.358 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:39:38.358 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:39:38.358 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:39:38.358 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:39:38.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:39:38.358 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:39:38.358 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:39:38.358 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1049235504, 0x0, 418435064) start.
17-03-17 20:39:38.548 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37704 803
17-03-17 20:39:38.698 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:39:38.758 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:39:38.758 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:39:38.758 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:38.758 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1049235504, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:39:38.758 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:39:38.758 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:38.758 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:39:38.758 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:39:38.768 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:39:38.768 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:39:38.898 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:39:38.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:39:38.898 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:39:38.898 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:39:38.898 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:39:38.898 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1084657768, 0x0, 391868352) start.
17-03-17 20:39:38.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:39:38.908 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:39:38.908 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:39:38.908 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1120080032, 0x0, 418435064) start.
17-03-17 20:39:39.088 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:39:39.088 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:39:39.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 37704 150' command took 2 ms to send, 1348 ms to get response, and 1354 ms overall
17-03-17 20:39:39.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:39:39.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.171794139690924. ------
17-03-17 20:39:39.098 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:39:39.098 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17758 mm
17-03-17 20:39:39.098 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:39:39.098 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:39:39.098 -07 000000458 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-17 20:39:39.098 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:39:39.098 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38793, sync = True, waitForSettling = False)
17-03-17 20:39:39.098 -07 000000433 INF: Z Motor: Moving to -0.177583 mm, started at -0.171794 mm, distance = -5.79 um
17-03-17 20:39:39.108 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:39:39.108 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:39.108 -07 000000501 INF: FPGA: Recv YRDPOS 126082
17-03-17 20:39:39.118 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:39:39.118 -07 000000458 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:39.118 -07 000000433 INF: FPGA: Xmit ZDACW 38793\n [Z Motor]
17-03-17 20:39:39.118 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:39:39.118 -07 000000458 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:39:39.118 -07 000000458 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:39:39.128 -07 000000433 INF: FPGA: 'ZDACW 38793' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:39:39.128 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:39:39.138 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:39:39.148 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:39:39.148 -07 000000478 INF: FPGA: Recv ZDACR 38793
17-03-17 20:39:39.158 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:39:39.158 -07 000000433 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:39:39.288 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1084657768, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:39:39.288 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:39:39.288 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:39.298 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:39:39.298 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:39:39.328 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:39:39.328 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:39:39.398 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1120080032, 0x0, 418435064) end. Duration was 494 ms.
17-03-17 20:39:39.398 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 494 ms.
17-03-17 20:39:39.398 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:39.398 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:39:39.408 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-17 20:39:39.508 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 20:39:39.508 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:39:39.548 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:39.548 -07 000000551 INF: FPGA: Recv YRDPOS 127785
17-03-17 20:39:39.558 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:39:39.558 -07 000000458 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:39.558 -07 000000458 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 20:39:39.558 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.131 mm/sec
17-03-17 20:39:40.508 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:40.508 -07 000000429 INF: FPGA: Recv YRDPOS 127785
17-03-17 20:39:40.518 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:39:40.518 -07 000000458 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:40.538 -07 000000458 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:39:40.538 -07 000000458 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:39:40.538 -07 000000458 INF: Y Motor: Moved to 62.3950 after 1435 ms (table move)
17-03-17 20:39:40.538 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177583 mm (DAC = 38793)
17-03-17 20:39:40.538 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:40.538 -07 000000541 INF: FPGA: Recv ZSGSRD 36931
17-03-17 20:39:40.548 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:39:40.548 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:40.548 -07 000000541 INF: FPGA: Recv ZSGSRD 36932
17-03-17 20:39:40.558 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:40.558 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:40.558 -07 000000541 INF: FPGA: Recv ZSGSRD 36936
17-03-17 20:39:40.568 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:40.568 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:40.568 -07 000000551 INF: FPGA: Recv ZSGSRD 36939
17-03-17 20:39:40.578 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:40.578 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:40.578 -07 000000551 INF: FPGA: Recv ZSGSRD 36931
17-03-17 20:39:40.588 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:40.588 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:40.588 -07 000000551 INF: FPGA: Recv ZSGSRD 36938
17-03-17 20:39:40.598 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:40.598 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:40.598 -07 000000551 INF: FPGA: Recv ZSGSRD 36926
17-03-17 20:39:40.608 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:40.608 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:40.608 -07 000000551 INF: FPGA: Recv ZSGSRD 36928
17-03-17 20:39:40.618 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:40.618 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:40.618 -07 000000551 INF: FPGA: Recv ZSGSRD 36928
17-03-17 20:39:40.628 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:40.628 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:40.628 -07 000000551 INF: FPGA: Recv ZSGSRD 36932
17-03-17 20:39:40.638 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:40.638 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:39:40.638 -07 000000382 INF: FPGA: Recv ZPIEZORD 33325
17-03-17 20:39:40.648 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:40.648 -07 000000627 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.919 V. Piezo Error = -8.0 V.
17-03-17 20:39:40.648 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36932 (-176.7 uncal um), Error = 0.9 uncal um, Median = 36932 (-176.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36926 (-176.7 uncal um), Max = 36939 (-176.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:39:40.648 -07 000000627 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36932, posNoise = 7, negNoise = 6
17-03-17 20:39:40.648 -07 000000627 INF: Z Motor: After move to -0.177583, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:39:40.648 -07 000000627 INF: Z Motor: Settle wait time = 1437 ms, measure time = 105 ms (allowed 150 ms), total time = 1542 ms
17-03-17 20:39:40.648 -07 000000627 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:39:40.698 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 20:39:40.698 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:39:40.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:39:40.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:39:40.698 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:39:40.698 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:39:40.698 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:39:40.698 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:39:40.698 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:39:40.698 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:39:40.708 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.990831,
17-03-17 20:39:40.708 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:39:40.708 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:39:40.708 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:39:40.708 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:39:40.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:39:40.778 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:39:40.978 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:39:40.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:39:40.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:39:40.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:39:41.018 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:39:41.018 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:39:41.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 303 ms overall
17-03-17 20:39:41.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:39:41.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:41.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:39:41.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:39:41.118 -07 000000623 INF: Autofocus start
17-03-17 20:39:41.118 -07 000000623 INF: MeasureProfile start
17-03-17 20:39:41.118 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:39:41.118 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:39:41.128 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:39:41.128 -07 000000623 INF: MeasureProfile done
17-03-17 20:39:41.128 -07 000000623 INF: X=96  Z correction [um]=0.4193256
17-03-17 20:39:41.128 -07 000000623 INF: Autofocus finished
17-03-17 20:39:41.148 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:39:41.348 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:39:41.348 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:39:41.348 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177582354830651. ----------
17-03-17 20:39:41.348 -07 000000610 INF: Cycle	41	Tile	4	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:39:41.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37397, sync = True, waitForSettling = True)
17-03-17 20:39:41.358 -07 000000610 INF: Z Motor: Moving to -0.171192 mm, started at -0.177582 mm, distance = 6.39 um
17-03-17 20:39:41.358 -07 000000610 INF: FPGA: Xmit ZDACW 37397\n [Z Motor]
17-03-17 20:39:41.358 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:39:41.368 -07 000000610 INF: FPGA: 'ZDACW 37397' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:41.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:39:41.368 -07 000000551 INF: FPGA: Recv ZDACR 37397
17-03-17 20:39:41.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:41.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:39:41.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:41.528 -07 000000623 INF: FPGA: Recv ZSGSRD 35933
17-03-17 20:39:41.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:39:41.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:41.538 -07 000000415 INF: FPGA: Recv ZSGSRD 35942
17-03-17 20:39:41.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:41.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:41.548 -07 000000623 INF: FPGA: Recv ZSGSRD 35941
17-03-17 20:39:41.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:41.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:41.558 -07 000000623 INF: FPGA: Recv ZSGSRD 35935
17-03-17 20:39:41.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:41.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:41.568 -07 000000501 INF: FPGA: Recv ZSGSRD 35939
17-03-17 20:39:41.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:41.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:41.578 -07 000000576 INF: FPGA: Recv ZSGSRD 35945
17-03-17 20:39:41.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:41.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:41.588 -07 000000576 INF: FPGA: Recv ZSGSRD 35945
17-03-17 20:39:41.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:41.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:41.598 -07 000000623 INF: FPGA: Recv ZSGSRD 35936
17-03-17 20:39:41.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:41.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:41.608 -07 000000415 INF: FPGA: Recv ZSGSRD 35938
17-03-17 20:39:41.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:41.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:41.618 -07 000000501 INF: FPGA: Recv ZSGSRD 35940
17-03-17 20:39:41.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:41.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:39:41.628 -07 000000576 INF: FPGA: Recv ZPIEZORD 32006
17-03-17 20:39:41.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:41.638 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.706 V. Piezo Error = -8.7 V.
17-03-17 20:39:41.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35939 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35940 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35933 (-170.3 uncal um), Max = 35945 (-170.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:39:41.638 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35939, posNoise = 6, negNoise = 6
17-03-17 20:39:41.638 -07 000000610 INF: Z Motor: After move to -0.171192, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:39:41.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:39:41.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:39:41.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:39:41.638 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:39:41.638 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:39:41.638 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:39:41.638 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:39:41.638 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:39:41.638 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:39:41.638 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:39:41.638 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:39:41.638 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:39:41.638 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:39:41.648 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:39:41.648 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:39:41.648 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:39:41.648 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:39:41.658 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 20:39:41.658 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:39:41.658 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 20:39:41.658 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:39:41.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 37573 150\n [Camera]
17-03-17 20:39:41.798 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:39:41.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:39:41.858 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:39:42.278 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:39:42.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:39:42.278 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:39:42.278 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:39:42.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:39:42.278 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:39:42.288 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:39:42.288 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:39:42.288 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:39:42.288 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:39:42.468 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37573 805
17-03-17 20:39:42.618 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:39:42.668 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:39:42.668 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:39:42.668 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:42.668 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:39:42.668 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:39:42.668 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:42.668 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:39:42.668 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:39:42.668 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:39:42.678 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:39:42.818 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:39:42.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:39:42.818 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:39:42.828 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:39:42.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:39:42.828 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:39:42.828 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:39:42.828 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 20:39:42.828 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:39:42.828 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-17 20:39:43.008 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:39:43.018 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:39:43.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 37573 150' command took 2 ms to send, 1350 ms to get response, and 1353 ms overall
17-03-17 20:39:43.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:39:43.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.171203112173882. ------
17-03-17 20:39:43.018 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17763 mm
17-03-17 20:39:43.018 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:39:43.018 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:39:43.018 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:39:43.018 -07 000000415 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 20:39:43.018 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38804, sync = True, waitForSettling = False)
17-03-17 20:39:43.018 -07 000000551 INF: Z Motor: Moving to -0.177633 mm, started at -0.171203 mm, distance = -6.43 um
17-03-17 20:39:43.028 -07 000000551 INF: FPGA: Xmit ZDACW 38804\n [Z Motor]
17-03-17 20:39:43.028 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:39:43.028 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:39:43.028 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:39:43.038 -07 000000551 INF: FPGA: 'ZDACW 38804' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:39:43.038 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:39:43.038 -07 000000431 INF: FPGA: Recv ZDACR 38804
17-03-17 20:39:43.048 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:43.048 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:39:43.048 -07 000000551 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 20:39:43.048 -07 000000576 INF: FPGA: Recv YRDPOS 127785
17-03-17 20:39:43.058 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:39:43.058 -07 000000415 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:43.058 -07 000000415 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:39:43.058 -07 000000415 INF: Y Motor: Moving 1340 steps-16
17-03-17 20:39:43.058 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:39:43.068 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:39:43.228 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:39:43.228 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:39:43.228 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:43.228 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:39:43.228 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:39:43.228 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:43.238 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:39:43.238 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 20:39:43.238 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:39:43.248 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 20:39:43.258 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:39:43.258 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 233 ms overall
17-03-17 20:39:43.438 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 20:39:43.438 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:39:43.478 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:43.478 -07 000000429 INF: FPGA: Recv YRDPOS 129482
17-03-17 20:39:43.488 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:39:43.488 -07 000000415 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:43.488 -07 000000415 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:39:43.488 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec
17-03-17 20:39:44.438 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:44.438 -07 000000551 INF: FPGA: Recv YRDPOS 129482
17-03-17 20:39:44.448 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:39:44.448 -07 000000415 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:44.468 -07 000000415 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:39:44.468 -07 000000415 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:39:44.468 -07 000000415 INF: Y Motor: Moved to 63.2236 after 1443 ms (table move)
17-03-17 20:39:44.468 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177633 mm (DAC = 38804)
17-03-17 20:39:44.468 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:44.468 -07 000000459 INF: FPGA: Recv ZSGSRD 36946
17-03-17 20:39:44.478 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:39:44.478 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:44.478 -07 000000459 INF: FPGA: Recv ZSGSRD 36936
17-03-17 20:39:44.488 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:44.488 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:44.488 -07 000000431 INF: FPGA: Recv ZSGSRD 36944
17-03-17 20:39:44.498 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:44.498 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:44.498 -07 000000429 INF: FPGA: Recv ZSGSRD 36943
17-03-17 20:39:44.508 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:44.508 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:44.508 -07 000000431 INF: FPGA: Recv ZSGSRD 36949
17-03-17 20:39:44.518 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:44.518 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:44.518 -07 000000623 INF: FPGA: Recv ZSGSRD 36943
17-03-17 20:39:44.528 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:44.528 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:44.528 -07 000000415 INF: FPGA: Recv ZSGSRD 36949
17-03-17 20:39:44.538 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:39:44.538 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:44.538 -07 000000459 INF: FPGA: Recv ZSGSRD 36939
17-03-17 20:39:44.548 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:44.548 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:44.548 -07 000000415 INF: FPGA: Recv ZSGSRD 36932
17-03-17 20:39:44.558 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:44.558 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:44.558 -07 000000551 INF: FPGA: Recv ZSGSRD 36936
17-03-17 20:39:44.568 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:44.568 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:39:44.568 -07 000000501 INF: FPGA: Recv ZPIEZORD 33334
17-03-17 20:39:44.578 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:44.578 -07 000000512 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.921 V. Piezo Error = -8.0 V.
17-03-17 20:39:44.578 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36942 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36943 (-176.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36932 (-176.7 uncal um), Max = 36949 (-176.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:39:44.578 -07 000000512 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36942, posNoise = 7, negNoise = 10
17-03-17 20:39:44.578 -07 000000512 INF: Z Motor: After move to -0.177633, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:39:44.578 -07 000000512 INF: Z Motor: Settle wait time = 1447 ms, measure time = 103 ms (allowed 150 ms), total time = 1550 ms
17-03-17 20:39:44.578 -07 000000512 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:39:44.628 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 20:39:44.628 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:39:44.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:39:44.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:39:44.628 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:39:44.628 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:39:44.628 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:39:44.628 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:39:44.628 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:39:44.628 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:39:44.638 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:39:44.638 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:39:44.638 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:39:44.638 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:39:44.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:39:44.688 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:39:44.888 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:39:44.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:39:44.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:39:44.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617610680, 0x0, 559484976) start.
17-03-17 20:39:44.928 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:39:44.928 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:39:44.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 20:39:45.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617610680, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:39:45.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:45.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:39:45.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:39:45.028 -07 000000429 INF: Autofocus start
17-03-17 20:39:45.028 -07 000000429 INF: MeasureProfile start
17-03-17 20:39:45.028 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:39:45.028 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:39:45.038 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:39:45.038 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:39:45.038 -07 000000429 INF: MeasureProfile done
17-03-17 20:39:45.038 -07 000000429 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:39:45.038 -07 000000429 INF: Autofocus finished
17-03-17 20:39:45.238 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:39:45.238 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:39:45.238 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177646596952068. ----------
17-03-17 20:39:45.238 -07 000000610 INF: Cycle	41	Tile	5	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:39:45.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37319, sync = True, waitForSettling = True)
17-03-17 20:39:45.248 -07 000000610 INF: Z Motor: Moving to -0.170835 mm, started at -0.177647 mm, distance = 6.81 um
17-03-17 20:39:45.248 -07 000000610 INF: FPGA: Xmit ZDACW 37319\n [Z Motor]
17-03-17 20:39:45.248 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:39:45.258 -07 000000610 INF: FPGA: 'ZDACW 37319' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:45.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:39:45.258 -07 000000433 INF: FPGA: Recv ZDACR 37319
17-03-17 20:39:45.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:45.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:39:45.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:45.418 -07 000000551 INF: FPGA: Recv ZSGSRD 35885
17-03-17 20:39:45.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:39:45.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:45.428 -07 000000541 INF: FPGA: Recv ZSGSRD 35883
17-03-17 20:39:45.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:45.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:45.438 -07 000000623 INF: FPGA: Recv ZSGSRD 35880
17-03-17 20:39:45.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:45.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:45.448 -07 000000551 INF: FPGA: Recv ZSGSRD 35885
17-03-17 20:39:45.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:45.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:45.458 -07 000000623 INF: FPGA: Recv ZSGSRD 35886
17-03-17 20:39:45.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:45.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:45.468 -07 000000623 INF: FPGA: Recv ZSGSRD 35881
17-03-17 20:39:45.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:45.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:45.478 -07 000000623 INF: FPGA: Recv ZSGSRD 35883
17-03-17 20:39:45.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:45.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:45.488 -07 000000512 INF: FPGA: Recv ZSGSRD 35883
17-03-17 20:39:45.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:45.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:45.498 -07 000000551 INF: FPGA: Recv ZSGSRD 35884
17-03-17 20:39:45.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:45.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:45.508 -07 000000623 INF: FPGA: Recv ZSGSRD 35881
17-03-17 20:39:45.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:45.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:39:45.518 -07 000000541 INF: FPGA: Recv ZPIEZORD 31925
17-03-17 20:39:45.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:45.528 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.695 V. Piezo Error = -8.7 V.
17-03-17 20:39:45.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35883 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35883 (-170.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35880 (-169.9 uncal um), Max = 35886 (-170.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:39:45.528 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35883, posNoise = 3, negNoise = 3
17-03-17 20:39:45.528 -07 000000610 INF: Z Motor: After move to -0.170835, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:39:45.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:39:45.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:39:45.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:39:45.528 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:39:45.528 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:39:45.528 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:39:45.528 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:39:45.528 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:39:45.528 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:39:45.528 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:39:45.528 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:39:45.528 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:39:45.528 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:39:45.538 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:39:45.538 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:39:45.538 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:39:45.538 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:39:45.548 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 20:39:45.548 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:39:45.548 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:39:45.548 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:39:45.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 37495 150\n [Camera]
17-03-17 20:39:45.748 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:39:46.078 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.001704,
17-03-17 20:39:46.168 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:39:46.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:39:46.168 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:39:46.168 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:39:46.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:39:46.168 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:39:46.288 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:39:46.288 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1049235504, 0x0, 391868352) start.
17-03-17 20:39:46.288 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:39:46.288 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:39:46.358 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37495 803
17-03-17 20:39:46.508 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:39:46.678 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1049235504, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:39:46.678 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:39:46.678 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:46.678 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 20:39:46.678 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:39:46.678 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:46.678 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:39:46.688 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 20:39:46.688 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:39:46.688 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 517 ms.
17-03-17 20:39:46.708 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1156
17-03-17 20:39:46.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1156
17-03-17 20:39:46.718 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:39:46.718 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1156
17-03-17 20:39:46.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1156
17-03-17 20:39:46.718 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:39:46.718 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:39:46.718 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:39:46.718 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:39:46.728 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:39:46.798 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:39:46.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:39:46.898 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:39:46.898 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:39:46.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 37495 150' command took 2 ms to send, 1349 ms to get response, and 1354 ms overall
17-03-17 20:39:46.908 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:39:46.908 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170843356293943. ------
17-03-17 20:39:46.908 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:39:46.908 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17731 mm
17-03-17 20:39:46.908 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:39:46.908 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:39:46.908 -07 000000551 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 20:39:46.908 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 38732, sync = True, waitForSettling = False)
17-03-17 20:39:46.908 -07 000000541 INF: Z Motor: Moving to -0.177304 mm, started at -0.170843 mm, distance = -6.46 um
17-03-17 20:39:46.908 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:39:46.918 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:39:46.918 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:46.918 -07 000000458 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:39:46.928 -07 000000541 INF: FPGA: Xmit ZDACW 38732\n [Z Motor]
17-03-17 20:39:46.928 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:39:46.928 -07 000000551 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:46.928 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:39:46.928 -07 000000551 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:39:46.928 -07 000000551 INF: Y Motor: Moving 1342 steps-18
17-03-17 20:39:46.938 -07 000000541 INF: FPGA: 'ZDACW 38732' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:39:46.938 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:39:46.948 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:39:46.958 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:39:46.958 -07 000000627 INF: FPGA: Recv ZDACR 38732
17-03-17 20:39:46.968 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:39:46.968 -07 000000541 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 20:39:47.108 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:39:47.108 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:39:47.108 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:47.108 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:39:47.108 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:39:47.108 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:47.108 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:39:47.118 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:39:47.118 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:39:47.118 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:39:47.138 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:39:47.138 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 20:39:47.318 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 20:39:47.318 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:39:47.358 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:47.358 -07 000000458 INF: FPGA: Recv YRDPOS 131187
17-03-17 20:39:47.368 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:39:47.368 -07 000000551 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:47.368 -07 000000551 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 20:39:47.368 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.124 mm/sec
17-03-17 20:39:48.318 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:48.318 -07 000000458 INF: FPGA: Recv YRDPOS 131187
17-03-17 20:39:48.328 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:39:48.328 -07 000000551 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:48.348 -07 000000551 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:39:48.348 -07 000000551 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:39:48.348 -07 000000551 INF: Y Motor: Moved to 64.0562 after 1434 ms (table move)
17-03-17 20:39:48.348 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177304 mm (DAC = 38732)
17-03-17 20:39:48.348 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:48.348 -07 000000429 INF: FPGA: Recv ZSGSRD 36890
17-03-17 20:39:48.358 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:39:48.358 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:48.358 -07 000000551 INF: FPGA: Recv ZSGSRD 36893
17-03-17 20:39:48.368 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:48.368 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:48.368 -07 000000459 INF: FPGA: Recv ZSGSRD 36895
17-03-17 20:39:48.378 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:48.378 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:48.378 -07 000000459 INF: FPGA: Recv ZSGSRD 36887
17-03-17 20:39:48.388 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:48.388 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:48.388 -07 000000512 INF: FPGA: Recv ZSGSRD 36894
17-03-17 20:39:48.398 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:39:48.398 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:48.398 -07 000000541 INF: FPGA: Recv ZSGSRD 36891
17-03-17 20:39:48.408 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:48.408 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:48.408 -07 000000541 INF: FPGA: Recv ZSGSRD 36884
17-03-17 20:39:48.418 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:48.418 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:48.418 -07 000000541 INF: FPGA: Recv ZSGSRD 36887
17-03-17 20:39:48.428 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:48.428 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:48.428 -07 000000458 INF: FPGA: Recv ZSGSRD 36885
17-03-17 20:39:48.438 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:48.438 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:48.438 -07 000000541 INF: FPGA: Recv ZSGSRD 36890
17-03-17 20:39:48.448 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:48.448 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:39:48.448 -07 000000458 INF: FPGA: Recv ZPIEZORD 33252
17-03-17 20:39:48.458 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:48.458 -07 000000623 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.910 V. Piezo Error = -8.1 V.
17-03-17 20:39:48.458 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36890 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36890 (-176.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36884 (-176.4 uncal um), Max = 36895 (-176.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:39:48.458 -07 000000623 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36890, posNoise = 5, negNoise = 6
17-03-17 20:39:48.458 -07 000000623 INF: Z Motor: After move to -0.177304, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:39:48.458 -07 000000623 INF: Z Motor: Settle wait time = 1437 ms, measure time = 104 ms (allowed 150 ms), total time = 1541 ms
17-03-17 20:39:48.458 -07 000000623 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:39:48.508 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 20:39:48.508 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:39:48.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:39:48.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:39:48.508 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:39:48.508 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:39:48.508 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:39:48.508 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:39:48.518 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:39:48.518 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:39:48.518 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:39:48.518 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:39:48.528 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:39:48.528 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 20:39:48.528 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:39:48.578 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 20:39:48.778 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 20:39:48.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 20:39:48.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:39:48.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2183041184, 0x0, 559484976) start.
17-03-17 20:39:48.808 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:39:48.808 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 20:39:48.808 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 20:39:48.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2183041184, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 20:39:48.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:48.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:39:48.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 20:39:48.908 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:39:48.908 -07 000000478 INF: Autofocus start
17-03-17 20:39:48.908 -07 000000478 INF: MeasureProfile start
17-03-17 20:39:48.908 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:39:48.918 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:39:48.918 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:39:48.918 -07 000000478 INF: MeasureProfile done
17-03-17 20:39:48.918 -07 000000478 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:39:48.918 -07 000000478 INF: Autofocus finished
17-03-17 20:39:49.118 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:39:49.118 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:39:49.118 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.177312537920697. ----------
17-03-17 20:39:49.118 -07 000000610 INF: Cycle	41	Tile	6	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:39:49.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37265, sync = True, waitForSettling = True)
17-03-17 20:39:49.128 -07 000000610 INF: Z Motor: Moving to -0.170588 mm, started at -0.177313 mm, distance = 6.72 um
17-03-17 20:39:49.128 -07 000000610 INF: FPGA: Xmit ZDACW 37265\n [Z Motor]
17-03-17 20:39:49.128 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:39:49.138 -07 000000610 INF: FPGA: 'ZDACW 37265' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:39:49.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:39:49.138 -07 000000512 INF: FPGA: Recv ZDACR 37265
17-03-17 20:39:49.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:49.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:39:49.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:49.298 -07 000000458 INF: FPGA: Recv ZSGSRD 35845
17-03-17 20:39:49.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:49.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:49.308 -07 000000429 INF: FPGA: Recv ZSGSRD 35840
17-03-17 20:39:49.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:49.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:49.318 -07 000000458 INF: FPGA: Recv ZSGSRD 35847
17-03-17 20:39:49.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:49.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:49.328 -07 000000458 INF: FPGA: Recv ZSGSRD 35844
17-03-17 20:39:49.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:49.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:49.338 -07 000000433 INF: FPGA: Recv ZSGSRD 35840
17-03-17 20:39:49.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:49.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:49.348 -07 000000512 INF: FPGA: Recv ZSGSRD 35843
17-03-17 20:39:49.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:49.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:49.358 -07 000000433 INF: FPGA: Recv ZSGSRD 35843
17-03-17 20:39:49.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:49.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:49.368 -07 000000512 INF: FPGA: Recv ZSGSRD 35850
17-03-17 20:39:49.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:49.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:49.378 -07 000000433 INF: FPGA: Recv ZSGSRD 35846
17-03-17 20:39:49.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:49.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:49.388 -07 000000415 INF: FPGA: Recv ZSGSRD 35842
17-03-17 20:39:49.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:49.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:39:49.398 -07 000000458 INF: FPGA: Recv ZPIEZORD 31888
17-03-17 20:39:49.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:49.408 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -8.7 V.
17-03-17 20:39:49.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35844 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35844 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35840 (-169.7 uncal um), Max = 35850 (-169.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:39:49.408 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35844, posNoise = 6, negNoise = 4
17-03-17 20:39:49.408 -07 000000610 INF: Z Motor: After move to -0.170588, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:39:49.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:39:49.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:39:49.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:39:49.408 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:39:49.408 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:39:49.408 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:39:49.408 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:39:49.408 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:39:49.408 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:39:49.408 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:39:49.408 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:39:49.408 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:39:49.408 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:39:49.418 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:39:49.418 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:39:49.418 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:39:49.418 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:39:49.418 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:39:49.418 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:39:49.428 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:39:49.428 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:39:49.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 37442 150\n [Camera]
17-03-17 20:39:49.628 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:39:50.048 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:39:50.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:39:50.048 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:39:50.048 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:39:50.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:39:50.048 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:39:50.158 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:39:50.158 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2202122568, 0x0, 391868352) start.
17-03-17 20:39:50.158 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:39:50.158 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:39:50.238 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37442 803
17-03-17 20:39:50.388 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:39:50.548 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2202122568, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:39:50.548 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:39:50.548 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:39:50.548 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:50.548 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:39:50.548 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:50.548 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:39:50.548 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:39:50.548 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-17 20:39:50.558 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-17 20:39:50.588 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:39:50.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:39:50.588 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:39:50.588 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:39:50.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:39:50.588 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:39:50.598 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:39:50.598 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:39:50.598 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:39:50.598 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:39:50.778 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:39:50.778 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:39:50.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 37442 150' command took 2 ms to send, 1346 ms to get response, and 1354 ms overall
17-03-17 20:39:50.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:39:50.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.170592812020415. ------
17-03-17 20:39:50.788 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:39:50.788 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17714 mm
17-03-17 20:39:50.788 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:39:50.998 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:39:50.998 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:39:50.998 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:50.998 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:39:50.998 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:39:50.998 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:50.998 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:39:50.998 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 20:39:50.998 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:39:51.008 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 20:39:51.018 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:39:51.018 -07 000000512 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-17 20:39:51.018 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:51.018 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:39:51.018 -07 000000433 INF: FPGA: Recv YRDPOS 131188
17-03-17 20:39:51.018 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 225 ms to get response, and 234 ms overall
17-03-17 20:39:51.018 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38697, sync = True, waitForSettling = False)
17-03-17 20:39:51.018 -07 000000433 INF: Z Motor: Moving to -0.177144 mm, started at -0.170593 mm, distance = -6.55 um
17-03-17 20:39:51.028 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:39:51.028 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:51.028 -07 000000512 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:51.028 -07 000000512 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:39:51.028 -07 000000512 INF: Y Motor: Moving 1338 steps-13
17-03-17 20:39:51.038 -07 000000433 INF: FPGA: Xmit ZDACW 38697\n [Z Motor]
17-03-17 20:39:51.048 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:39:51.738 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:39:51.738 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:39:51.738 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 20:39:51.738 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 680 ms to get response, and 706 ms overall
17-03-17 20:39:51.738 -07 000000433 INF: FPGA: 'ZDACW 38697' command took 0 ms to send, 690 ms to get response, and 713 ms overall
17-03-17 20:39:51.738 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:39:51.738 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 700 ms to get response, and 714 ms overall
17-03-17 20:39:51.738 -07 000000458 INF: FPGA: Recv ZDACR 38697
17-03-17 20:39:51.748 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:39:51.748 -07 000000433 INF: Z Motor: MoveAbsStepped took 723 ms (did NOT wait for settling yet))
17-03-17 20:39:51.778 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:51.778 -07 000000433 INF: FPGA: Recv YRDPOS 132871
17-03-17 20:39:51.788 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:39:51.788 -07 000000512 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:51.788 -07 000000512 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:39:51.788 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 707 ms, distance = 0.836 mm, average velocity = 1.183 mm/sec
17-03-17 20:39:51.798 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:39:51.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:39:52.358 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.008536,
17-03-17 20:39:52.738 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:52.738 -07 000000576 INF: FPGA: Recv YRDPOS 132871
17-03-17 20:39:52.748 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:52.748 -07 000000512 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:52.768 -07 000000512 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:39:52.768 -07 000000512 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:39:52.768 -07 000000512 INF: Y Motor: Moved to 64.8784 after 1752 ms (table move)
17-03-17 20:39:52.768 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177144 mm (DAC = 38697)
17-03-17 20:39:52.768 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:52.778 -07 000000458 INF: FPGA: Recv ZSGSRD 36868
17-03-17 20:39:52.778 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:39:52.778 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:52.778 -07 000000431 INF: FPGA: Recv ZSGSRD 36864
17-03-17 20:39:52.788 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:52.788 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:52.788 -07 000000458 INF: FPGA: Recv ZSGSRD 36865
17-03-17 20:39:52.798 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:52.798 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:52.798 -07 000000431 INF: FPGA: Recv ZSGSRD 36866
17-03-17 20:39:52.808 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:52.808 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:52.808 -07 000000433 INF: FPGA: Recv ZSGSRD 36876
17-03-17 20:39:52.818 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:52.818 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:52.818 -07 000000627 INF: FPGA: Recv ZSGSRD 36873
17-03-17 20:39:52.828 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:52.828 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:52.828 -07 000000431 INF: FPGA: Recv ZSGSRD 36857
17-03-17 20:39:52.838 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:52.838 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:52.838 -07 000000501 INF: FPGA: Recv ZSGSRD 36862
17-03-17 20:39:52.848 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:52.848 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:52.848 -07 000000627 INF: FPGA: Recv ZSGSRD 36864
17-03-17 20:39:52.858 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:52.858 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:52.858 -07 000000501 INF: FPGA: Recv ZSGSRD 36863
17-03-17 20:39:52.868 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:52.868 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:39:52.868 -07 000000576 INF: FPGA: Recv ZPIEZORD 33237
17-03-17 20:39:52.878 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:52.878 -07 000000415 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.905 V. Piezo Error = -8.0 V.
17-03-17 20:39:52.878 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36866 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36864 (-176.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36857 (-176.2 uncal um), Max = 36876 (-176.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:39:52.878 -07 000000415 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36866, posNoise = 10, negNoise = 9
17-03-17 20:39:52.878 -07 000000415 INF: Z Motor: After move to -0.177144, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:39:52.878 -07 000000415 INF: Z Motor: Settle wait time = 1750 ms, measure time = 104 ms (allowed 150 ms), total time = 1854 ms
17-03-17 20:39:52.878 -07 000000415 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:39:52.928 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2138 ms
17-03-17 20:39:52.928 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:39:52.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:39:52.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:39:52.928 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:39:52.928 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:39:52.928 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:39:52.928 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:39:52.928 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:39:52.928 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:39:52.938 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:39:52.938 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:39:52.938 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:39:52.938 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:39:52.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:39:52.988 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:39:53.188 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:39:53.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:39:53.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:39:53.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617610680, 0x0, 559484976) start.
17-03-17 20:39:53.228 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:39:53.228 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 20:39:53.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 20:39:53.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617610680, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:39:53.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:53.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:39:53.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:39:53.328 -07 000000627 INF: Autofocus start
17-03-17 20:39:53.328 -07 000000627 INF: MeasureProfile start
17-03-17 20:39:53.328 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:39:53.328 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:39:53.338 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:39:53.338 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:39:53.338 -07 000000627 INF: MeasureProfile done
17-03-17 20:39:53.338 -07 000000627 INF: X=-32  Z correction [um]=-0.2344
17-03-17 20:39:53.338 -07 000000627 INF: Autofocus finished
17-03-17 20:39:53.538 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:39:53.538 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:39:53.538 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.177158356829294. ----------
17-03-17 20:39:53.548 -07 000000610 INF: Cycle	41	Tile	7	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:39:53.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37158, sync = True, waitForSettling = True)
17-03-17 20:39:53.548 -07 000000610 INF: Z Motor: Moving to -0.170098 mm, started at -0.177158 mm, distance = 7.06 um
17-03-17 20:39:53.548 -07 000000610 INF: FPGA: Xmit ZDACW 37158\n [Z Motor]
17-03-17 20:39:53.548 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:39:53.558 -07 000000610 INF: FPGA: 'ZDACW 37158' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:39:53.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:39:53.558 -07 000000501 INF: FPGA: Recv ZDACR 37158
17-03-17 20:39:53.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:53.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:39:53.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:53.718 -07 000000512 INF: FPGA: Recv ZSGSRD 35771
17-03-17 20:39:53.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:53.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:53.728 -07 000000459 INF: FPGA: Recv ZSGSRD 35775
17-03-17 20:39:53.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:53.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:53.738 -07 000000431 INF: FPGA: Recv ZSGSRD 35773
17-03-17 20:39:53.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:53.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:53.748 -07 000000431 INF: FPGA: Recv ZSGSRD 35764
17-03-17 20:39:53.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:53.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:53.758 -07 000000415 INF: FPGA: Recv ZSGSRD 35769
17-03-17 20:39:53.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:53.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:53.768 -07 000000459 INF: FPGA: Recv ZSGSRD 35780
17-03-17 20:39:53.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:53.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:53.778 -07 000000415 INF: FPGA: Recv ZSGSRD 35771
17-03-17 20:39:53.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:53.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:53.788 -07 000000458 INF: FPGA: Recv ZSGSRD 35766
17-03-17 20:39:53.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:53.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:53.798 -07 000000415 INF: FPGA: Recv ZSGSRD 35767
17-03-17 20:39:53.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:53.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:53.808 -07 000000576 INF: FPGA: Recv ZSGSRD 35770
17-03-17 20:39:53.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:53.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:39:53.818 -07 000000415 INF: FPGA: Recv ZPIEZORD 31764
17-03-17 20:39:53.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:53.828 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.670 V. Piezo Error = -8.8 V.
17-03-17 20:39:53.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35771 (-169.2 uncal um), Error = 0.8 uncal um, Median = 35770 (-169.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35764 (-169.2 uncal um), Max = 35780 (-169.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:39:53.828 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35771, posNoise = 9, negNoise = 7
17-03-17 20:39:53.828 -07 000000610 INF: Z Motor: After move to -0.170098, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:39:53.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:39:53.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:39:53.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:39:53.828 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:39:53.828 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:39:53.828 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:39:53.828 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:39:53.828 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:39:53.828 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:39:53.828 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:39:53.828 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:39:53.828 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:39:53.828 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:39:53.838 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:39:53.838 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:39:53.838 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:39:53.838 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:39:53.848 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:39:53.848 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:39:53.848 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:39:53.848 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:39:53.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 37335 150\n [Camera]
17-03-17 20:39:54.048 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:39:54.468 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:39:54.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:39:54.468 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:39:54.468 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:39:54.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:39:54.468 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:39:54.468 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:39:54.468 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:39:54.468 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:39:54.468 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:39:54.658 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37335 803
17-03-17 20:39:54.808 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:39:54.868 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:39:54.868 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:39:54.868 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:54.868 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:39:54.868 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:39:54.868 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:54.868 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:39:54.868 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:39:54.868 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:39:54.878 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:39:55.008 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:39:55.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:39:55.008 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:39:55.118 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:39:55.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:39:55.118 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:39:55.118 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:39:55.118 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1049235504, 0x0, 391868352) start.
17-03-17 20:39:55.118 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:39:55.118 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:39:55.198 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:39:55.198 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:39:55.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 37335 150' command took 2 ms to send, 1347 ms to get response, and 1354 ms overall
17-03-17 20:39:55.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:39:55.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.170123844534066. ------
17-03-17 20:39:55.208 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:39:55.208 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17655 mm
17-03-17 20:39:55.208 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:39:55.208 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:39:55.208 -07 000000433 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 20:39:55.218 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:55.518 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:39:55.518 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:39:55.518 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:55.518 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1049235504, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 20:39:55.518 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:39:55.518 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:55.528 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:39:55.528 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:39:55.528 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 20:39:55.528 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:39:55.538 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38568, sync = True, waitForSettling = False)
17-03-17 20:39:55.538 -07 000000627 INF: Z Motor: Moving to -0.176553 mm, started at -0.170124 mm, distance = -6.43 um
17-03-17 20:39:55.538 -07 000000627 INF: FPGA: Xmit ZDACW 38568\n [Z Motor]
17-03-17 20:39:55.538 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:39:55.538 -07 000000458 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:39:55.538 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 328 ms to get response, and 335 ms overall
17-03-17 20:39:55.538 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 318 ms to get response, and 333 ms overall
17-03-17 20:39:55.538 -07 000000433 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:55.538 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:39:55.548 -07 000000627 INF: FPGA: 'ZDACW 38568' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:39:55.548 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:39:55.548 -07 000000458 INF: FPGA: Recv ZDACR 38568
17-03-17 20:39:55.548 -07 000000433 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:39:55.548 -07 000000433 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:39:55.558 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:55.558 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:39:55.558 -07 000000627 INF: Z Motor: MoveAbsStepped took 13 ms (did NOT wait for settling yet))
17-03-17 20:39:55.568 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:39:55.758 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:39:55.758 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 214 ms overall
17-03-17 20:39:55.938 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 20:39:55.938 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:39:55.978 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:55.978 -07 000000512 INF: FPGA: Recv YRDPOS 134581
17-03-17 20:39:55.988 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:39:55.988 -07 000000433 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:55.988 -07 000000433 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:39:55.988 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-17 20:39:56.798 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:39:56.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:39:56.938 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:56.938 -07 000000458 INF: FPGA: Recv YRDPOS 134582
17-03-17 20:39:56.948 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:56.948 -07 000000433 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:56.968 -07 000000433 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:39:56.968 -07 000000433 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:39:56.968 -07 000000433 INF: Y Motor: Moved to 65.7139 after 1762 ms (table move)
17-03-17 20:39:56.978 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176553 mm (DAC = 38568)
17-03-17 20:39:56.978 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:56.978 -07 000000458 INF: FPGA: Recv ZSGSRD 36774
17-03-17 20:39:56.988 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:56.988 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:56.988 -07 000000627 INF: FPGA: Recv ZSGSRD 36771
17-03-17 20:39:56.998 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:56.998 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:56.998 -07 000000458 INF: FPGA: Recv ZSGSRD 36775
17-03-17 20:39:57.008 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:57.008 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:57.008 -07 000000512 INF: FPGA: Recv ZSGSRD 36771
17-03-17 20:39:57.018 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:57.018 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:57.018 -07 000000627 INF: FPGA: Recv ZSGSRD 36766
17-03-17 20:39:57.028 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:57.028 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:57.028 -07 000000433 INF: FPGA: Recv ZSGSRD 36767
17-03-17 20:39:57.038 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:57.038 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:57.038 -07 000000627 INF: FPGA: Recv ZSGSRD 36778
17-03-17 20:39:57.048 -07 000000415 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:57.048 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:57.048 -07 000000623 INF: FPGA: Recv ZSGSRD 36768
17-03-17 20:39:57.058 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:57.058 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:57.058 -07 000000627 INF: FPGA: Recv ZSGSRD 36775
17-03-17 20:39:57.068 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:57.068 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:57.068 -07 000000433 INF: FPGA: Recv ZSGSRD 36780
17-03-17 20:39:57.078 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:57.078 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:39:57.078 -07 000000627 INF: FPGA: Recv ZPIEZORD 33114
17-03-17 20:39:57.088 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:57.088 -07 000000415 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.885 V. Piezo Error = -8.1 V.
17-03-17 20:39:57.088 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36772 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36772 (-175.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36766 (-175.6 uncal um), Max = 36780 (-175.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:39:57.088 -07 000000415 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36772, posNoise = 8, negNoise = 6
17-03-17 20:39:57.088 -07 000000415 INF: Z Motor: After move to -0.176553, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:39:57.088 -07 000000415 INF: Z Motor: Settle wait time = 1433 ms, measure time = 110 ms (allowed 150 ms), total time = 1543 ms
17-03-17 20:39:57.088 -07 000000415 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 20:39:57.128 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1916 ms
17-03-17 20:39:57.128 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:39:57.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:39:57.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:39:57.128 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:39:57.128 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:39:57.128 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:39:57.128 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:39:57.128 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:39:57.128 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:39:57.138 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:39:57.138 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:39:57.148 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-17 20:39:57.148 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:39:57.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:39:57.198 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:39:57.398 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:39:57.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:39:57.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:39:57.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424724128, 0x0, 559484976) start.
17-03-17 20:39:57.438 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:39:57.438 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 20:39:57.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 20:39:57.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424724128, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 20:39:57.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:57.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:39:57.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 20:39:57.538 -07 000000551 INF: Autofocus start
17-03-17 20:39:57.538 -07 000000551 INF: MeasureProfile start
17-03-17 20:39:57.538 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:39:57.538 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:39:57.548 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:39:57.548 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:39:57.558 -07 000000551 INF: MeasureProfile done
17-03-17 20:39:57.558 -07 000000551 INF: X=64  Z correction [um]=0.2557664
17-03-17 20:39:57.558 -07 000000551 INF: Autofocus finished
17-03-17 20:39:57.728 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.011254,
17-03-17 20:39:57.748 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:39:57.748 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 20:39:57.748 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.176554480887969. ----------
17-03-17 20:39:57.748 -07 000000610 INF: Cycle	41	Tile	8	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:39:57.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37136, sync = True, waitForSettling = True)
17-03-17 20:39:57.758 -07 000000610 INF: Z Motor: Moving to -0.169998 mm, started at -0.176554 mm, distance = 6.56 um
17-03-17 20:39:57.768 -07 000000610 INF: FPGA: Xmit ZDACW 37136\n [Z Motor]
17-03-17 20:39:57.768 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:39:57.778 -07 000000610 INF: FPGA: 'ZDACW 37136' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:39:57.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:39:57.778 -07 000000478 INF: FPGA: Recv ZDACR 37136
17-03-17 20:39:57.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:57.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:39:57.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:57.938 -07 000000433 INF: FPGA: Recv ZSGSRD 35756
17-03-17 20:39:57.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:39:57.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:57.948 -07 000000382 INF: FPGA: Recv ZSGSRD 35757
17-03-17 20:39:57.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:57.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:57.958 -07 000000415 INF: FPGA: Recv ZSGSRD 35750
17-03-17 20:39:57.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:57.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:57.968 -07 000000576 INF: FPGA: Recv ZSGSRD 35753
17-03-17 20:39:57.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:57.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:57.978 -07 000000551 INF: FPGA: Recv ZSGSRD 35751
17-03-17 20:39:57.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:57.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:57.988 -07 000000627 INF: FPGA: Recv ZSGSRD 35758
17-03-17 20:39:57.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:57.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:57.998 -07 000000541 INF: FPGA: Recv ZSGSRD 35754
17-03-17 20:39:58.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:58.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:58.008 -07 000000459 INF: FPGA: Recv ZSGSRD 35751
17-03-17 20:39:58.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:58.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:58.018 -07 000000478 INF: FPGA: Recv ZSGSRD 35756
17-03-17 20:39:58.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:58.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:39:58.028 -07 000000458 INF: FPGA: Recv ZSGSRD 35753
17-03-17 20:39:58.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:58.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:39:58.038 -07 000000431 INF: FPGA: Recv ZPIEZORD 31764
17-03-17 20:39:58.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:39:58.048 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.667 V. Piezo Error = -8.8 V.
17-03-17 20:39:58.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35754 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35754 (-169.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35750 (-169.1 uncal um), Max = 35758 (-169.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:39:58.048 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35754, posNoise = 4, negNoise = 4
17-03-17 20:39:58.048 -07 000000610 INF: Z Motor: After move to -0.169998, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:39:58.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 20:39:58.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:39:58.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:39:58.048 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:39:58.048 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:39:58.048 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:39:58.048 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:39:58.048 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:39:58.048 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:39:58.048 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:39:58.048 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:39:58.048 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:39:58.048 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:39:58.058 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:39:58.058 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:39:58.058 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:39:58.058 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:39:58.068 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:39:58.068 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:39:58.068 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:39:58.068 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:39:58.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 37313 150\n [Camera]
17-03-17 20:39:58.268 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:39:58.688 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:39:58.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:39:58.688 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:39:58.688 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:39:58.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:39:58.688 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:39:58.698 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:39:58.698 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1443805512, 0x0, 391868352) start.
17-03-17 20:39:58.698 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:39:58.698 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:39:58.878 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37313 803
17-03-17 20:39:59.028 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:39:59.088 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1443805512, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:39:59.088 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:39:59.088 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:59.088 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 20:39:59.088 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:39:59.088 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:59.088 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:39:59.088 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:39:59.088 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:39:59.098 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:39:59.228 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:39:59.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:39:59.228 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:39:59.238 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:39:59.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:39:59.238 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:39:59.348 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:39:59.348 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:39:59.348 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:39:59.348 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:39:59.418 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:39:59.428 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:39:59.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 37313 150' command took 2 ms to send, 1350 ms to get response, and 1355 ms overall
17-03-17 20:39:59.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:39:59.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.170014632927656. ------
17-03-17 20:39:59.428 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:39:59.428 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17641 mm
17-03-17 20:39:59.428 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:39:59.428 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:39:59.428 -07 000000415 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 20:39:59.438 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:39:59.728 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:39:59.728 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:39:59.728 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:59.728 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:39:59.738 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 500 ms.
17-03-17 20:39:59.738 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:39:59.738 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:39:59.738 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:39:59.738 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:39:59.748 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 20:39:59.748 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 38537, sync = True, waitForSettling = False)
17-03-17 20:39:59.748 -07 000000541 INF: Z Motor: Moving to -0.176411 mm, started at -0.170015 mm, distance = -6.40 um
17-03-17 20:39:59.748 -07 000000541 INF: FPGA: Xmit ZDACW 38537\n [Z Motor]
17-03-17 20:39:59.758 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:39:59.758 -07 000000429 INF: FPGA: Recv YRDPOS 134582
17-03-17 20:39:59.758 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 320 ms to get response, and 324 ms overall
17-03-17 20:39:59.758 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 310 ms to get response, and 322 ms overall
17-03-17 20:39:59.758 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:39:59.758 -07 000000541 INF: FPGA: 'ZDACW 38537' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:39:59.758 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:39:59.758 -07 000000415 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:39:59.758 -07 000000415 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:39:59.758 -07 000000415 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:39:59.758 -07 000000429 INF: FPGA: Recv ZDACR 38537
17-03-17 20:39:59.768 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:39:59.768 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:39:59.768 -07 000000541 INF: Z Motor: MoveAbsStepped took 13 ms (did NOT wait for settling yet))
17-03-17 20:39:59.778 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:39:59.968 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:39:59.968 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 20:40:00.148 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 20:40:00.148 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 20:40:00.188 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:00.188 -07 000000429 INF: FPGA: Recv YRDPOS 136271
17-03-17 20:40:00.198 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:40:00.198 -07 000000415 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:00.198 -07 000000415 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:40:00.198 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.839 mm, average velocity = 2.118 mm/sec
17-03-17 20:40:01.148 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:01.148 -07 000000541 INF: FPGA: Recv YRDPOS 136271
17-03-17 20:40:01.158 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:01.158 -07 000000415 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:01.178 -07 000000415 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:40:01.178 -07 000000415 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:40:01.178 -07 000000415 INF: Y Motor: Moved to 66.5386 after 1745 ms (table move)
17-03-17 20:40:01.178 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176411 mm (DAC = 38537)
17-03-17 20:40:01.178 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:01.188 -07 000000541 INF: FPGA: Recv ZSGSRD 36749
17-03-17 20:40:01.188 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:40:01.188 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:01.188 -07 000000415 INF: FPGA: Recv ZSGSRD 36755
17-03-17 20:40:01.198 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:01.198 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:01.198 -07 000000541 INF: FPGA: Recv ZSGSRD 36746
17-03-17 20:40:01.208 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:01.208 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:01.208 -07 000000429 INF: FPGA: Recv ZSGSRD 36759
17-03-17 20:40:01.218 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:01.218 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:01.218 -07 000000415 INF: FPGA: Recv ZSGSRD 36751
17-03-17 20:40:01.228 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:01.228 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:01.228 -07 000000429 INF: FPGA: Recv ZSGSRD 36746
17-03-17 20:40:01.238 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:01.238 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:01.238 -07 000000541 INF: FPGA: Recv ZSGSRD 36750
17-03-17 20:40:01.248 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:01.248 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:01.248 -07 000000458 INF: FPGA: Recv ZSGSRD 36743
17-03-17 20:40:01.258 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:01.258 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:01.258 -07 000000541 INF: FPGA: Recv ZSGSRD 36748
17-03-17 20:40:01.268 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:01.268 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:01.268 -07 000000415 INF: FPGA: Recv ZSGSRD 36746
17-03-17 20:40:01.278 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:01.278 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:01.278 -07 000000429 INF: FPGA: Recv ZPIEZORD 33104
17-03-17 20:40:01.288 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:01.288 -07 000000382 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.880 V. Piezo Error = -8.1 V.
17-03-17 20:40:01.288 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36749 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36748 (-175.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36743 (-175.5 uncal um), Max = 36759 (-175.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:40:01.288 -07 000000382 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36749, posNoise = 10, negNoise = 6
17-03-17 20:40:01.288 -07 000000382 INF: Z Motor: After move to -0.176411, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:01.288 -07 000000382 INF: Z Motor: Settle wait time = 1430 ms, measure time = 104 ms (allowed 150 ms), total time = 1534 ms
17-03-17 20:40:01.288 -07 000000382 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:40:01.338 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1904 ms
17-03-17 20:40:01.338 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:40:01.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:01.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:01.338 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:01.338 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:01.338 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:40:01.338 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:01.338 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:01.338 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:40:01.348 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:40:01.348 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:40:01.358 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:40:01.358 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:40:01.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:40:01.408 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:40:01.608 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:40:01.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:40:01.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:40:01.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617610680, 0x0, 559484976) start.
17-03-17 20:40:01.648 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:40:01.648 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:40:01.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 20:40:01.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617610680, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:40:01.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:01.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:40:01.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:40:01.748 -07 000000458 INF: Autofocus start
17-03-17 20:40:01.748 -07 000000458 INF: MeasureProfile start
17-03-17 20:40:01.748 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:01.748 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:01.758 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:40:01.758 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:40:01.758 -07 000000458 INF: MeasureProfile done
17-03-17 20:40:01.758 -07 000000458 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:40:01.758 -07 000000458 INF: Autofocus finished
17-03-17 20:40:01.798 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:40:01.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:40:01.958 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:40:01.958 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:40:01.958 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.176406724008708. ----------
17-03-17 20:40:01.958 -07 000000610 INF: Cycle	41	Tile	9	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:40:01.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37034, sync = True, waitForSettling = True)
17-03-17 20:40:01.968 -07 000000610 INF: Z Motor: Moving to -0.169531 mm, started at -0.176407 mm, distance = 6.88 um
17-03-17 20:40:01.968 -07 000000610 INF: FPGA: Xmit ZDACW 37034\n [Z Motor]
17-03-17 20:40:01.968 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:40:01.978 -07 000000610 INF: FPGA: 'ZDACW 37034' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:40:01.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:01.978 -07 000000431 INF: FPGA: Recv ZDACR 37034
17-03-17 20:40:01.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:01.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:40:02.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:02.138 -07 000000541 INF: FPGA: Recv ZSGSRD 35681
17-03-17 20:40:02.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:02.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:02.148 -07 000000431 INF: FPGA: Recv ZSGSRD 35677
17-03-17 20:40:02.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:02.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:02.158 -07 000000541 INF: FPGA: Recv ZSGSRD 35675
17-03-17 20:40:02.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:02.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:02.168 -07 000000458 INF: FPGA: Recv ZSGSRD 35680
17-03-17 20:40:02.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:02.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:02.178 -07 000000541 INF: FPGA: Recv ZSGSRD 35683
17-03-17 20:40:02.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:02.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:02.188 -07 000000458 INF: FPGA: Recv ZSGSRD 35680
17-03-17 20:40:02.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:02.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:02.198 -07 000000431 INF: FPGA: Recv ZSGSRD 35678
17-03-17 20:40:02.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:02.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:02.208 -07 000000415 INF: FPGA: Recv ZSGSRD 35683
17-03-17 20:40:02.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:02.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:02.218 -07 000000541 INF: FPGA: Recv ZSGSRD 35679
17-03-17 20:40:02.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:02.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:02.228 -07 000000415 INF: FPGA: Recv ZSGSRD 35674
17-03-17 20:40:02.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:02.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:02.238 -07 000000429 INF: FPGA: Recv ZPIEZORD 31678
17-03-17 20:40:02.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:02.248 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -8.8 V.
17-03-17 20:40:02.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35679 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35680 (-168.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35674 (-168.6 uncal um), Max = 35683 (-168.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:40:02.248 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35679, posNoise = 4, negNoise = 5
17-03-17 20:40:02.248 -07 000000610 INF: Z Motor: After move to -0.169531, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:02.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:40:02.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:02.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:02.248 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:40:02.248 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:02.248 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:02.248 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:02.248 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:40:02.248 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:40:02.248 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:02.248 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:40:02.248 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:40:02.248 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:40:02.258 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:40:02.258 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:40:02.258 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:40:02.258 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:40:02.258 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:40:02.258 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:40:02.268 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:40:02.268 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:40:02.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 37210 150\n [Camera]
17-03-17 20:40:02.468 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:40:02.888 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:40:02.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:40:02.888 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:02.888 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:40:02.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:40:02.898 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:02.898 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:02.898 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1439400208, 0x0, 391868352) start.
17-03-17 20:40:02.898 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:02.898 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:40:03.078 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37210 803
17-03-17 20:40:03.098 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.0344,
17-03-17 20:40:03.228 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:40:03.268 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1439400208, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 20:40:03.268 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 20:40:03.268 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:03.268 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:40:03.268 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:40:03.268 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:03.268 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:03.268 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:40:03.278 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:03.278 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:40:03.428 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:40:03.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:40:03.438 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:03.438 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:40:03.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:40:03.438 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:03.438 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:03.438 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:40:03.438 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:03.438 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:40:03.628 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:40:03.628 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:40:03.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 37210 150' command took 2 ms to send, 1351 ms to get response, and 1356 ms overall
17-03-17 20:40:03.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:40:03.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.169532817017024. ------
17-03-17 20:40:03.738 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17636 mm
17-03-17 20:40:03.738 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:40:03.738 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:03.738 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:40:03.738 -07 000000458 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 20:40:03.738 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38527, sync = True, waitForSettling = False)
17-03-17 20:40:03.738 -07 000000512 INF: Z Motor: Moving to -0.176365 mm, started at -0.169533 mm, distance = -6.83 um
17-03-17 20:40:03.738 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:03.748 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:40:03.748 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:03.758 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:40:03.768 -07 000000512 INF: FPGA: Xmit ZDACW 38527\n [Z Motor]
17-03-17 20:40:03.818 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:40:03.818 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:40:03.818 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:03.828 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:03.828 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:40:03.828 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:40:03.828 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:03.828 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:40:03.838 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:03.838 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:40:03.848 -07 000000478 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:40:03.848 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:40:03.848 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 91 ms to get response, and 101 ms overall
17-03-17 20:40:03.848 -07 000000512 INF: FPGA: 'ZDACW 38527' command took 0 ms to send, 70 ms to get response, and 101 ms overall
17-03-17 20:40:03.848 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:03.848 -07 000000458 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:03.848 -07 000000478 INF: FPGA: Recv ZDACR 38527
17-03-17 20:40:03.848 -07 000000458 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:40:03.848 -07 000000458 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:40:03.858 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:40:03.858 -07 000000512 INF: Z Motor: MoveAbsStepped took 110 ms (did NOT wait for settling yet))
17-03-17 20:40:03.858 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:40:03.958 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:40:03.958 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:40:04.228 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 20:40:04.228 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-17 20:40:04.268 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:04.268 -07 000000512 INF: FPGA: Recv YRDPOS 137977
17-03-17 20:40:04.278 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:40:04.278 -07 000000458 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:04.278 -07 000000458 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 20:40:04.278 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.844 mm, average velocity = 2.221 mm/sec
17-03-17 20:40:05.228 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:05.228 -07 000000382 INF: FPGA: Recv YRDPOS 137977
17-03-17 20:40:05.238 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:05.238 -07 000000458 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:05.258 -07 000000458 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:40:05.258 -07 000000458 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:40:05.258 -07 000000458 INF: Y Motor: Moved to 67.3716 after 1513 ms (table move)
17-03-17 20:40:05.258 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176365 mm (DAC = 38527)
17-03-17 20:40:05.258 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:05.268 -07 000000382 INF: FPGA: Recv ZSGSRD 36743
17-03-17 20:40:05.268 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:40:05.268 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:05.268 -07 000000478 INF: FPGA: Recv ZSGSRD 36742
17-03-17 20:40:05.278 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:05.278 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:05.278 -07 000000478 INF: FPGA: Recv ZSGSRD 36741
17-03-17 20:40:05.288 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:05.288 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:05.288 -07 000000458 INF: FPGA: Recv ZSGSRD 36754
17-03-17 20:40:05.298 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:05.298 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:05.298 -07 000000512 INF: FPGA: Recv ZSGSRD 36745
17-03-17 20:40:05.308 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:05.308 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:05.308 -07 000000382 INF: FPGA: Recv ZSGSRD 36739
17-03-17 20:40:05.318 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:05.318 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:05.318 -07 000000478 INF: FPGA: Recv ZSGSRD 36742
17-03-17 20:40:05.328 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:05.328 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:05.328 -07 000000458 INF: FPGA: Recv ZSGSRD 36736
17-03-17 20:40:05.338 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:05.338 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:05.338 -07 000000478 INF: FPGA: Recv ZSGSRD 36744
17-03-17 20:40:05.348 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:05.348 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:05.348 -07 000000478 INF: FPGA: Recv ZSGSRD 36745
17-03-17 20:40:05.358 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:05.358 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:05.358 -07 000000512 INF: FPGA: Recv ZPIEZORD 33072
17-03-17 20:40:05.368 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:05.368 -07 000000501 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.879 V. Piezo Error = -8.1 V.
17-03-17 20:40:05.368 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36743 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36742 (-175.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36736 (-175.4 uncal um), Max = 36754 (-175.5 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:40:05.368 -07 000000501 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36743, posNoise = 11, negNoise = 7
17-03-17 20:40:05.368 -07 000000501 INF: Z Motor: After move to -0.176365, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:05.368 -07 000000501 INF: Z Motor: Settle wait time = 1517 ms, measure time = 104 ms (allowed 150 ms), total time = 1621 ms
17-03-17 20:40:05.368 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:40:05.418 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1674 ms
17-03-17 20:40:05.418 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:40:05.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:05.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:05.418 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:05.418 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:05.418 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:40:05.418 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:05.418 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:05.418 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:40:05.428 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:40:05.428 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:40:05.438 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:40:05.438 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:40:05.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:40:05.488 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:40:05.688 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:40:05.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:40:05.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:40:05.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:40:05.728 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:40:05.728 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 20:40:05.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:40:05.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:40:05.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:05.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:40:05.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:40:05.828 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:05.828 -07 000000458 INF: Autofocus start
17-03-17 20:40:05.828 -07 000000458 INF: MeasureProfile start
17-03-17 20:40:05.828 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:05.838 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:40:05.838 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:40:05.838 -07 000000458 INF: MeasureProfile done
17-03-17 20:40:05.838 -07 000000458 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:40:05.838 -07 000000458 INF: Autofocus finished
17-03-17 20:40:06.038 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:40:06.038 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:40:06.048 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.176368178735858. ----------
17-03-17 20:40:06.048 -07 000000610 INF: Cycle	41	Tile	10	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:40:06.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37024, sync = True, waitForSettling = True)
17-03-17 20:40:06.048 -07 000000610 INF: Z Motor: Moving to -0.169485 mm, started at -0.176368 mm, distance = 6.88 um
17-03-17 20:40:06.048 -07 000000610 INF: FPGA: Xmit ZDACW 37024\n [Z Motor]
17-03-17 20:40:06.058 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:40:06.058 -07 000000610 INF: FPGA: 'ZDACW 37024' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:40:06.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:06.058 -07 000000458 INF: FPGA: Recv ZDACR 37024
17-03-17 20:40:06.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:06.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:40:06.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:06.218 -07 000000478 INF: FPGA: Recv ZSGSRD 35676
17-03-17 20:40:06.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:06.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:06.228 -07 000000512 INF: FPGA: Recv ZSGSRD 35677
17-03-17 20:40:06.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:06.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:06.238 -07 000000576 INF: FPGA: Recv ZSGSRD 35671
17-03-17 20:40:06.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:06.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:06.248 -07 000000382 INF: FPGA: Recv ZSGSRD 35669
17-03-17 20:40:06.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:06.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:06.258 -07 000000501 INF: FPGA: Recv ZSGSRD 35674
17-03-17 20:40:06.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:06.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:06.268 -07 000000576 INF: FPGA: Recv ZSGSRD 35671
17-03-17 20:40:06.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:06.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:06.278 -07 000000478 INF: FPGA: Recv ZSGSRD 35674
17-03-17 20:40:06.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:06.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:06.288 -07 000000512 INF: FPGA: Recv ZSGSRD 35670
17-03-17 20:40:06.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:06.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:06.298 -07 000000478 INF: FPGA: Recv ZSGSRD 35669
17-03-17 20:40:06.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:06.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:06.308 -07 000000512 INF: FPGA: Recv ZSGSRD 35674
17-03-17 20:40:06.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:06.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:06.318 -07 000000576 INF: FPGA: Recv ZPIEZORD 31679
17-03-17 20:40:06.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:06.328 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.650 V. Piezo Error = -8.8 V.
17-03-17 20:40:06.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35672 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35672 (-168.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35669 (-168.6 uncal um), Max = 35677 (-168.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:40:06.328 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35672, posNoise = 5, negNoise = 3
17-03-17 20:40:06.328 -07 000000610 INF: Z Motor: After move to -0.169485, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:06.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 20:40:06.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:06.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:06.328 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:06.328 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:40:06.328 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:06.328 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:06.328 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:40:06.328 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:40:06.328 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:06.328 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:40:06.328 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:40:06.328 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:40:06.338 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:40:06.338 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:40:06.338 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:40:06.338 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:40:06.338 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:40:06.338 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:40:06.348 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:40:06.348 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:40:06.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 37200 150\n [Camera]
17-03-17 20:40:06.548 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:40:06.808 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:40:06.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:40:06.968 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:40:06.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:40:06.968 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:06.968 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:40:06.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:40:06.968 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:06.968 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:06.968 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:40:06.978 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:06.978 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:40:07.158 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37200 803
17-03-17 20:40:07.308 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:40:07.348 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 20:40:07.348 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 20:40:07.348 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:07.348 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:40:07.348 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:40:07.348 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:07.348 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:40:07.358 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:40:07.358 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:40:07.368 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:40:07.508 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:40:07.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:40:07.508 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:07.508 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:40:07.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:40:07.518 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:07.518 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:07.518 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:40:07.518 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:07.518 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:40:07.698 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:40:07.698 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:40:07.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 37200 150' command took 2 ms to send, 1348 ms to get response, and 1353 ms overall
17-03-17 20:40:07.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:40:07.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169487847532032. ------
17-03-17 20:40:07.708 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:07.708 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17585 mm
17-03-17 20:40:07.708 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:40:07.708 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:07.708 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:40:07.708 -07 000000501 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 20:40:07.708 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38415, sync = True, waitForSettling = False)
17-03-17 20:40:07.708 -07 000000458 INF: Z Motor: Moving to -0.175853 mm, started at -0.169488 mm, distance = -6.36 um
17-03-17 20:40:07.718 -07 000000458 INF: FPGA: Xmit ZDACW 38415\n [Z Motor]
17-03-17 20:40:07.718 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:40:07.718 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:40:07.728 -07 000000458 INF: FPGA: 'ZDACW 38415' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:07.728 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:07.728 -07 000000429 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:40:07.738 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:40:07.738 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:40:07.738 -07 000000501 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:07.738 -07 000000501 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:40:07.738 -07 000000501 INF: Y Motor: Moving 1345 steps-23
17-03-17 20:40:07.748 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:07.748 -07 000000476 INF: FPGA: Recv ZDACR 38415
17-03-17 20:40:07.758 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:40:07.758 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:40:07.758 -07 000000458 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 20:40:07.908 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:40:07.908 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:40:07.908 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:07.908 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 20:40:07.908 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:40:07.908 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:07.908 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:07.918 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:40:07.918 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:40:07.918 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:40:07.938 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:40:07.938 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:40:08.128 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 20:40:08.128 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:40:08.188 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:08.188 -07 000000382 INF: FPGA: Recv YRDPOS 139682
17-03-17 20:40:08.198 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:40:08.198 -07 000000501 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:08.198 -07 000000501 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:40:08.198 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.841 mm, average velocity = 2.135 mm/sec
17-03-17 20:40:08.468 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.031682,
17-03-17 20:40:09.148 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:09.148 -07 000000431 INF: FPGA: Recv YRDPOS 139683
17-03-17 20:40:09.158 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:09.158 -07 000000501 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:09.178 -07 000000501 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:40:09.178 -07 000000501 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:40:09.178 -07 000000501 INF: Y Motor: Moved to 68.2046 after 1462 ms (table move)
17-03-17 20:40:09.178 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175853 mm (DAC = 38415)
17-03-17 20:40:09.178 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:09.178 -07 000000501 INF: FPGA: Recv ZSGSRD 36660
17-03-17 20:40:09.188 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:40:09.188 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:09.188 -07 000000478 INF: FPGA: Recv ZSGSRD 36669
17-03-17 20:40:09.198 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:09.198 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:09.198 -07 000000501 INF: FPGA: Recv ZSGSRD 36667
17-03-17 20:40:09.208 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:09.208 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:09.208 -07 000000458 INF: FPGA: Recv ZSGSRD 36667
17-03-17 20:40:09.218 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:09.218 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:09.218 -07 000000478 INF: FPGA: Recv ZSGSRD 36666
17-03-17 20:40:09.228 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:09.228 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:09.228 -07 000000478 INF: FPGA: Recv ZSGSRD 36656
17-03-17 20:40:09.238 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:09.238 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:09.238 -07 000000501 INF: FPGA: Recv ZSGSRD 36668
17-03-17 20:40:09.248 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:09.248 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:09.248 -07 000000458 INF: FPGA: Recv ZSGSRD 36669
17-03-17 20:40:09.258 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:09.258 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:09.258 -07 000000501 INF: FPGA: Recv ZSGSRD 36666
17-03-17 20:40:09.268 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:09.268 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:09.268 -07 000000478 INF: FPGA: Recv ZSGSRD 36670
17-03-17 20:40:09.278 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:09.278 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:09.278 -07 000000501 INF: FPGA: Recv ZPIEZORD 32967
17-03-17 20:40:09.288 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:09.288 -07 000000576 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.862 V. Piezo Error = -8.2 V.
17-03-17 20:40:09.288 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36666 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36667 (-175.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36656 (-174.9 uncal um), Max = 36670 (-175.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:40:09.288 -07 000000576 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36666, posNoise = 4, negNoise = 10
17-03-17 20:40:09.288 -07 000000576 INF: Z Motor: After move to -0.175853, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:09.288 -07 000000576 INF: Z Motor: Settle wait time = 1467 ms, measure time = 104 ms (allowed 150 ms), total time = 1571 ms
17-03-17 20:40:09.288 -07 000000576 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:40:09.338 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-17 20:40:09.338 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:40:09.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:09.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:09.338 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:09.338 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:09.338 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:40:09.338 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:09.348 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:09.348 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:40:09.348 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:40:09.348 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:40:09.358 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:40:09.358 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 20:40:09.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:40:09.408 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:40:09.608 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:40:09.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:40:09.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:40:09.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460146392, 0x0, 559484976) start.
17-03-17 20:40:09.648 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:40:09.648 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:40:09.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:40:09.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1460146392, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:40:09.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:09.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:40:09.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:40:09.748 -07 000000458 INF: Autofocus start
17-03-17 20:40:09.748 -07 000000458 INF: MeasureProfile start
17-03-17 20:40:09.748 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:09.748 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:09.758 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:40:09.758 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:40:09.758 -07 000000458 INF: MeasureProfile done
17-03-17 20:40:09.758 -07 000000458 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:40:09.758 -07 000000458 INF: Autofocus finished
17-03-17 20:40:09.958 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:40:09.958 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:40:09.958 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.175873514400942. ----------
17-03-17 20:40:09.958 -07 000000610 INF: Cycle	41	Tile	11	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:40:09.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36930, sync = True, waitForSettling = True)
17-03-17 20:40:09.968 -07 000000610 INF: Z Motor: Moving to -0.169055 mm, started at -0.175874 mm, distance = 6.82 um
17-03-17 20:40:09.968 -07 000000610 INF: FPGA: Xmit ZDACW 36930\n [Z Motor]
17-03-17 20:40:09.968 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:40:09.978 -07 000000610 INF: FPGA: 'ZDACW 36930' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:40:09.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:09.978 -07 000000458 INF: FPGA: Recv ZDACR 36930
17-03-17 20:40:09.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:09.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:40:10.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:10.138 -07 000000458 INF: FPGA: Recv ZSGSRD 35614
17-03-17 20:40:10.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:10.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:10.148 -07 000000431 INF: FPGA: Recv ZSGSRD 35605
17-03-17 20:40:10.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:10.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:10.158 -07 000000431 INF: FPGA: Recv ZSGSRD 35607
17-03-17 20:40:10.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:10.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:10.168 -07 000000478 INF: FPGA: Recv ZSGSRD 35607
17-03-17 20:40:10.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:10.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:10.178 -07 000000458 INF: FPGA: Recv ZSGSRD 35606
17-03-17 20:40:10.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:10.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:10.188 -07 000000501 INF: FPGA: Recv ZSGSRD 35607
17-03-17 20:40:10.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:10.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:10.198 -07 000000501 INF: FPGA: Recv ZSGSRD 35601
17-03-17 20:40:10.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:10.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:10.208 -07 000000458 INF: FPGA: Recv ZSGSRD 35609
17-03-17 20:40:10.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:10.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:10.218 -07 000000576 INF: FPGA: Recv ZSGSRD 35605
17-03-17 20:40:10.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:10.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:10.228 -07 000000431 INF: FPGA: Recv ZSGSRD 35605
17-03-17 20:40:10.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:10.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:10.238 -07 000000576 INF: FPGA: Recv ZPIEZORD 31583
17-03-17 20:40:10.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:10.248 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.635 V. Piezo Error = -8.9 V.
17-03-17 20:40:10.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35607 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35606 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35601 (-168.2 uncal um), Max = 35614 (-168.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:40:10.248 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35607, posNoise = 7, negNoise = 6
17-03-17 20:40:10.248 -07 000000610 INF: Z Motor: After move to -0.169055, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:10.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:40:10.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:10.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:10.248 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:10.248 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:10.248 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:40:10.248 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:10.248 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:40:10.248 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:40:10.248 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:10.248 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:40:10.248 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:40:10.248 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:40:10.258 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:40:10.258 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:40:10.258 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:40:10.258 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:40:10.258 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:40:10.258 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:40:10.268 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:40:10.268 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:40:10.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 37107 150\n [Camera]
17-03-17 20:40:10.468 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:40:10.888 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:40:10.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:40:10.888 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:10.888 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:10.888 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:40:10.888 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:40:10.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:40:10.888 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:10.888 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:10.888 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:40:11.078 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37107 805
17-03-17 20:40:11.228 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:40:11.268 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:40:11.268 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:40:11.268 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:11.268 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:40:11.268 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:40:11.268 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:11.268 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:40:11.268 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:40:11.268 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:40:11.278 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:40:11.428 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:40:11.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:40:11.428 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:11.428 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:11.428 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:40:11.428 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:40:11.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:40:11.438 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:11.438 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:11.438 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:40:11.618 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:40:11.618 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:40:11.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 37107 150' command took 2 ms to send, 1348 ms to get response, and 1353 ms overall
17-03-17 20:40:11.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:40:11.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.169070273742817. ------
17-03-17 20:40:11.628 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:11.628 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17560 mm
17-03-17 20:40:11.628 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:40:11.628 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:40:11.628 -07 000000627 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 20:40:11.738 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:11.748 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:11.748 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 115 ms overall
17-03-17 20:40:11.748 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38360, sync = True, waitForSettling = False)
17-03-17 20:40:11.748 -07 000000478 INF: Z Motor: Moving to -0.175601 mm, started at -0.169070 mm, distance = -6.53 um
17-03-17 20:40:11.748 -07 000000433 INF: FPGA: Recv YRDPOS 139683
17-03-17 20:40:11.758 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:11.758 -07 000000627 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:11.758 -07 000000627 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:40:11.758 -07 000000627 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:40:11.758 -07 000000478 INF: FPGA: Xmit ZDACW 38360\n [Z Motor]
17-03-17 20:40:11.758 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:40:11.768 -07 000000478 INF: FPGA: 'ZDACW 38360' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:40:11.768 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:40:11.778 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:40:11.788 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:11.788 -07 000000429 INF: FPGA: Recv ZDACR 38360
17-03-17 20:40:11.798 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:40:11.798 -07 000000478 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 20:40:11.808 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:40:11.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:40:11.828 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:40:11.828 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:40:11.828 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:11.828 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 20:40:11.828 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:40:11.828 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:11.828 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:11.828 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:40:11.838 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:40:11.838 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:40:11.968 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:40:11.968 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:40:12.158 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 20:40:12.158 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 20:40:12.188 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:12.198 -07 000000501 INF: FPGA: Recv YRDPOS 141366
17-03-17 20:40:12.198 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:40:12.198 -07 000000627 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:12.198 -07 000000627 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 20:40:12.198 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.095 mm/sec
17-03-17 20:40:13.148 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:13.148 -07 000000478 INF: FPGA: Recv YRDPOS 141367
17-03-17 20:40:13.158 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:13.158 -07 000000627 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:13.178 -07 000000627 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:40:13.178 -07 000000627 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:40:13.178 -07 000000627 INF: Y Motor: Moved to 69.0269 after 1545 ms (table move)
17-03-17 20:40:13.178 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175601 mm (DAC = 38360)
17-03-17 20:40:13.178 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:13.178 -07 000000429 INF: FPGA: Recv ZSGSRD 36633
17-03-17 20:40:13.188 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:40:13.188 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:13.188 -07 000000448 INF: FPGA: Recv ZSGSRD 36625
17-03-17 20:40:13.198 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:13.198 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:13.198 -07 000000551 INF: FPGA: Recv ZSGSRD 36626
17-03-17 20:40:13.208 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:13.218 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:13.218 -07 000000448 INF: FPGA: Recv ZSGSRD 36627
17-03-17 20:40:13.228 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:40:13.228 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:13.228 -07 000000478 INF: FPGA: Recv ZSGSRD 36621
17-03-17 20:40:13.238 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:13.238 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:13.238 -07 000000551 INF: FPGA: Recv ZSGSRD 36621
17-03-17 20:40:13.248 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:40:13.248 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:13.248 -07 000000501 INF: FPGA: Recv ZSGSRD 36627
17-03-17 20:40:13.258 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:13.258 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:13.258 -07 000000448 INF: FPGA: Recv ZSGSRD 36628
17-03-17 20:40:13.268 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:13.268 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:13.268 -07 000000478 INF: FPGA: Recv ZSGSRD 36629
17-03-17 20:40:13.278 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:13.278 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:13.278 -07 000000551 INF: FPGA: Recv ZSGSRD 36623
17-03-17 20:40:13.288 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:13.288 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:13.288 -07 000000627 INF: FPGA: Recv ZPIEZORD 32965
17-03-17 20:40:13.298 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:13.298 -07 000000458 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.853 V. Piezo Error = -8.1 V.
17-03-17 20:40:13.298 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36626 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36626 (-174.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36621 (-174.7 uncal um), Max = 36633 (-174.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:40:13.298 -07 000000458 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36626, posNoise = 7, negNoise = 5
17-03-17 20:40:13.298 -07 000000458 INF: Z Motor: After move to -0.175601, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:13.298 -07 000000458 INF: Z Motor: Settle wait time = 1435 ms, measure time = 115 ms (allowed 150 ms), total time = 1550 ms
17-03-17 20:40:13.298 -07 000000458 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-17 20:40:13.338 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1705 ms
17-03-17 20:40:13.338 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:40:13.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:13.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:13.338 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:13.338 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:40:13.338 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:13.338 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:13.338 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:40:13.338 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:40:13.348 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:40:13.348 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:40:13.358 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:40:13.358 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 20:40:13.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:40:13.398 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:40:13.598 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:40:13.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:40:13.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:40:13.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:40:13.638 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:40:13.638 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 20:40:13.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 20:40:13.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:40:13.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:13.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:40:13.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:40:13.838 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.012614,
17-03-17 20:40:13.838 -07 000000429 INF: Autofocus start
17-03-17 20:40:13.838 -07 000000429 INF: MeasureProfile start
17-03-17 20:40:13.848 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:13.848 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:13.858 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:40:13.858 -07 000000429 INF: MeasureProfile done
17-03-17 20:40:13.858 -07 000000429 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:40:13.858 -07 000000429 INF: Autofocus finished
17-03-17 20:40:13.878 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:40:14.078 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:40:14.078 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 20:40:14.078 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.175616545915272. ----------
17-03-17 20:40:14.088 -07 000000610 INF: Cycle	41	Tile	12	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:40:14.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36893, sync = True, waitForSettling = True)
17-03-17 20:40:14.088 -07 000000610 INF: Z Motor: Moving to -0.168885 mm, started at -0.175617 mm, distance = 6.73 um
17-03-17 20:40:14.088 -07 000000610 INF: FPGA: Xmit ZDACW 36893\n [Z Motor]
17-03-17 20:40:14.088 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:40:14.098 -07 000000610 INF: FPGA: 'ZDACW 36893' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:40:14.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:14.098 -07 000000501 INF: FPGA: Recv ZDACR 36893
17-03-17 20:40:14.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:14.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:40:14.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:14.258 -07 000000429 INF: FPGA: Recv ZSGSRD 35587
17-03-17 20:40:14.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:14.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:14.268 -07 000000458 INF: FPGA: Recv ZSGSRD 35572
17-03-17 20:40:14.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:14.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:14.278 -07 000000429 INF: FPGA: Recv ZSGSRD 35585
17-03-17 20:40:14.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:14.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:14.288 -07 000000458 INF: FPGA: Recv ZSGSRD 35576
17-03-17 20:40:14.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:14.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:14.298 -07 000000627 INF: FPGA: Recv ZSGSRD 35588
17-03-17 20:40:14.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:14.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:14.308 -07 000000501 INF: FPGA: Recv ZSGSRD 35583
17-03-17 20:40:14.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:14.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:14.318 -07 000000458 INF: FPGA: Recv ZSGSRD 35580
17-03-17 20:40:14.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:14.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:14.328 -07 000000627 INF: FPGA: Recv ZSGSRD 35579
17-03-17 20:40:14.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:14.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:14.338 -07 000000501 INF: FPGA: Recv ZSGSRD 35573
17-03-17 20:40:14.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:14.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:14.348 -07 000000429 INF: FPGA: Recv ZSGSRD 35583
17-03-17 20:40:14.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:14.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:14.358 -07 000000458 INF: FPGA: Recv ZPIEZORD 31567
17-03-17 20:40:14.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:14.368 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -8.9 V.
17-03-17 20:40:14.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35581 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35582 (-168.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35572 (-168.0 uncal um), Max = 35588 (-168.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:40:14.368 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35581, posNoise = 7, negNoise = 9
17-03-17 20:40:14.368 -07 000000610 INF: Z Motor: After move to -0.168885, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:14.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:40:14.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:14.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:14.368 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:40:14.368 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:14.368 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:14.368 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:40:14.368 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:40:14.368 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:14.368 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:14.368 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:40:14.368 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:40:14.368 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:40:14.368 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:40:14.368 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:40:14.378 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:40:14.378 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:40:14.378 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:40:14.378 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:40:14.378 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:40:14.388 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:40:14.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 37070 150\n [Camera]
17-03-17 20:40:14.588 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:40:14.998 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:40:14.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:40:15.008 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:15.008 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:40:15.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:40:15.008 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:15.008 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:15.008 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:40:15.008 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:15.008 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:40:15.198 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37070 803
17-03-17 20:40:15.348 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:40:15.378 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 20:40:15.378 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 20:40:15.378 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:15.388 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:40:15.388 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:40:15.388 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:15.388 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:40:15.388 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:40:15.388 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:40:15.398 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:40:15.548 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:40:15.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:40:15.548 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:15.548 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:40:15.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:40:15.548 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:15.558 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:15.558 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460146392, 0x0, 391868352) start.
17-03-17 20:40:15.558 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:15.558 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-17 20:40:15.738 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:40:15.738 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:40:15.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 37070 150' command took 2 ms to send, 1345 ms to get response, and 1353 ms overall
17-03-17 20:40:15.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:40:15.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.168903244227132. ------
17-03-17 20:40:15.748 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:15.748 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17526 mm
17-03-17 20:40:15.748 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:40:15.748 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:15.748 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:40:15.748 -07 000000429 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 20:40:15.748 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38285, sync = True, waitForSettling = False)
17-03-17 20:40:15.748 -07 000000627 INF: Z Motor: Moving to -0.175257 mm, started at -0.168903 mm, distance = -6.35 um
17-03-17 20:40:15.758 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:15.758 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:15.758 -07 000000476 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:40:15.768 -07 000000627 INF: FPGA: Xmit ZDACW 38285\n [Z Motor]
17-03-17 20:40:15.768 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:40:15.768 -07 000000429 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:15.768 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:40:15.768 -07 000000429 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:40:15.768 -07 000000429 INF: Y Motor: Moving 1352 steps-33
17-03-17 20:40:15.778 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:40:15.778 -07 000000627 INF: FPGA: 'ZDACW 38285' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:40:15.788 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:40:15.918 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:15.918 -07 000000433 INF: FPGA: Recv ZDACR 38285
17-03-17 20:40:15.928 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 149 ms overall
17-03-17 20:40:15.928 -07 000000627 INF: Z Motor: MoveAbsStepped took 176 ms (did NOT wait for settling yet))
17-03-17 20:40:15.938 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:40:15.938 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:40:15.938 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:15.948 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:15.948 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460146392, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:40:15.948 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:40:15.948 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:15.948 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:40:15.948 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:40:15.948 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:40:15.978 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:40:15.978 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 225 ms overall
17-03-17 20:40:16.278 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 20:40:16.278 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 121 ms to send, 369 ms to get response, and 515 ms overall
17-03-17 20:40:16.318 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:16.318 -07 000000382 INF: FPGA: Recv YRDPOS 143079
17-03-17 20:40:16.328 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:40:16.328 -07 000000429 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:16.328 -07 000000429 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:40:16.328 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 516 ms, distance = 0.846 mm, average velocity = 1.639 mm/sec
17-03-17 20:40:16.808 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:40:16.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:40:17.278 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:17.278 -07 000000382 INF: FPGA: Recv YRDPOS 143079
17-03-17 20:40:17.288 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:17.288 -07 000000429 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:17.308 -07 000000429 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:40:17.308 -07 000000429 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:40:17.308 -07 000000429 INF: Y Motor: Moved to 69.8628 after 1559 ms (table move)
17-03-17 20:40:17.308 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175257 mm (DAC = 38285)
17-03-17 20:40:17.308 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:17.308 -07 000000623 INF: FPGA: Recv ZSGSRD 36569
17-03-17 20:40:17.318 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:40:17.318 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:17.318 -07 000000623 INF: FPGA: Recv ZSGSRD 36558
17-03-17 20:40:17.328 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:17.328 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:17.328 -07 000000623 INF: FPGA: Recv ZSGSRD 36570
17-03-17 20:40:17.338 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:17.338 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:17.338 -07 000000623 INF: FPGA: Recv ZSGSRD 36574
17-03-17 20:40:17.348 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:17.348 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:17.348 -07 000000623 INF: FPGA: Recv ZSGSRD 36568
17-03-17 20:40:17.358 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:17.358 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:17.358 -07 000000458 INF: FPGA: Recv ZSGSRD 36565
17-03-17 20:40:17.368 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:17.368 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:17.368 -07 000000458 INF: FPGA: Recv ZSGSRD 36577
17-03-17 20:40:17.378 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:17.378 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:17.378 -07 000000512 INF: FPGA: Recv ZSGSRD 36572
17-03-17 20:40:17.388 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:17.388 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:17.388 -07 000000512 INF: FPGA: Recv ZSGSRD 36571
17-03-17 20:40:17.398 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:17.398 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:17.398 -07 000000512 INF: FPGA: Recv ZSGSRD 36572
17-03-17 20:40:17.408 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:17.408 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:17.408 -07 000000433 INF: FPGA: Recv ZPIEZORD 32909
17-03-17 20:40:17.418 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:17.418 -07 000000501 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.842 V. Piezo Error = -8.1 V.
17-03-17 20:40:17.418 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36570 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36570 (-174.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36558 (-174.3 uncal um), Max = 36577 (-174.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 20:40:17.418 -07 000000501 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36570, posNoise = 7, negNoise = 12
17-03-17 20:40:17.418 -07 000000501 INF: Z Motor: After move to -0.175257, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:17.418 -07 000000501 INF: Z Motor: Settle wait time = 1562 ms, measure time = 104 ms (allowed 150 ms), total time = 1666 ms
17-03-17 20:40:17.418 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:40:17.468 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1719 ms
17-03-17 20:40:17.468 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:40:17.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:17.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:17.468 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:17.468 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:40:17.468 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:17.468 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:17.468 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:17.468 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:40:17.478 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:40:17.478 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:40:17.488 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:40:17.488 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:40:17.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:40:17.538 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:40:17.738 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:40:17.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:40:17.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:40:17.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:40:17.778 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:40:17.778 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 20:40:17.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 20:40:17.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 20:40:17.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:17.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:40:17.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 20:40:17.878 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:17.878 -07 000000478 INF: Autofocus start
17-03-17 20:40:17.878 -07 000000478 INF: MeasureProfile start
17-03-17 20:40:17.878 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:17.888 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:40:17.888 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:40:17.888 -07 000000478 INF: MeasureProfile done
17-03-17 20:40:17.888 -07 000000478 INF: X=48  Z correction [um]=0.1739867
17-03-17 20:40:17.888 -07 000000478 INF: Autofocus finished
17-03-17 20:40:18.088 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:40:18.088 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 20:40:18.088 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.175256790035333. ----------
17-03-17 20:40:18.098 -07 000000610 INF: Cycle	41	Tile	13	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:40:18.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36836, sync = True, waitForSettling = True)
17-03-17 20:40:18.098 -07 000000610 INF: Z Motor: Moving to -0.168624 mm, started at -0.175257 mm, distance = 6.63 um
17-03-17 20:40:18.098 -07 000000610 INF: FPGA: Xmit ZDACW 36836\n [Z Motor]
17-03-17 20:40:18.098 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:40:18.108 -07 000000610 INF: FPGA: 'ZDACW 36836' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:40:18.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:18.108 -07 000000478 INF: FPGA: Recv ZDACR 36836
17-03-17 20:40:18.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:18.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:40:18.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:18.268 -07 000000429 INF: FPGA: Recv ZSGSRD 35546
17-03-17 20:40:18.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:18.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:18.278 -07 000000433 INF: FPGA: Recv ZSGSRD 35530
17-03-17 20:40:18.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:18.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:18.288 -07 000000478 INF: FPGA: Recv ZSGSRD 35535
17-03-17 20:40:18.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:18.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:18.298 -07 000000429 INF: FPGA: Recv ZSGSRD 35537
17-03-17 20:40:18.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:18.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:18.308 -07 000000429 INF: FPGA: Recv ZSGSRD 35544
17-03-17 20:40:18.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:18.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:18.318 -07 000000433 INF: FPGA: Recv ZSGSRD 35534
17-03-17 20:40:18.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:18.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:18.328 -07 000000433 INF: FPGA: Recv ZSGSRD 35537
17-03-17 20:40:18.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:18.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:18.338 -07 000000478 INF: FPGA: Recv ZSGSRD 35543
17-03-17 20:40:18.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:18.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:18.348 -07 000000429 INF: FPGA: Recv ZSGSRD 35540
17-03-17 20:40:18.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:18.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:18.358 -07 000000478 INF: FPGA: Recv ZSGSRD 35537
17-03-17 20:40:18.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:18.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:18.368 -07 000000478 INF: FPGA: Recv ZPIEZORD 31541
17-03-17 20:40:18.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:18.378 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -8.8 V.
17-03-17 20:40:18.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35538 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35537 (-167.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35530 (-167.7 uncal um), Max = 35546 (-167.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:40:18.378 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35538, posNoise = 8, negNoise = 8
17-03-17 20:40:18.378 -07 000000610 INF: Z Motor: After move to -0.168624, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:18.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:40:18.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:18.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:18.378 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:18.378 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:18.378 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:40:18.378 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:18.378 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:40:18.378 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:40:18.378 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:40:18.378 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:40:18.388 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:40:18.388 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:40:18.388 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:40:18.388 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:40:18.388 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:40:18.388 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:40:18.398 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:40:18.398 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:40:18.398 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:40:18.398 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:40:18.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 37013 150\n [Camera]
17-03-17 20:40:18.598 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:40:19.018 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:40:19.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:40:19.018 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:19.018 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:40:19.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:40:19.028 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:19.028 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:19.028 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:40:19.028 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:19.028 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:40:19.208 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37013 803
17-03-17 20:40:19.218 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.98264,
17-03-17 20:40:19.358 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:40:19.398 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 20:40:19.398 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 20:40:19.398 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 20:40:19.398 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:19.398 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 20:40:19.398 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:19.408 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:40:19.408 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:40:19.408 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:40:19.418 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:40:19.558 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:40:19.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:40:19.558 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:19.568 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:40:19.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:40:19.568 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:19.568 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:19.568 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:40:19.568 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:19.568 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 20:40:19.748 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:40:19.758 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:40:19.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 37013 150' command took 2 ms to send, 1350 ms to get response, and 1354 ms overall
17-03-17 20:40:19.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:40:19.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.168627003105036. ------
17-03-17 20:40:19.758 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:19.758 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17501 mm
17-03-17 20:40:19.758 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:40:19.768 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:40:19.768 -07 000000459 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 20:40:19.768 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 38231, sync = True, waitForSettling = False)
17-03-17 20:40:19.768 -07 000000541 INF: Z Motor: Moving to -0.175010 mm, started at -0.168627 mm, distance = -6.38 um
17-03-17 20:40:19.768 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:19.768 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:19.768 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:40:19.768 -07 000000478 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:40:19.778 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:19.778 -07 000000459 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:19.778 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:40:19.778 -07 000000459 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:40:19.778 -07 000000459 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:40:19.788 -07 000000541 INF: FPGA: Xmit ZDACW 38231\n [Z Motor]
17-03-17 20:40:19.788 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:40:19.798 -07 000000541 INF: FPGA: 'ZDACW 38231' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:40:19.798 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:40:19.808 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:19.808 -07 000000382 INF: FPGA: Recv ZDACR 38231
17-03-17 20:40:19.818 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:40:19.818 -07 000000541 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 20:40:19.958 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:40:19.958 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:40:19.958 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:19.958 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:19.958 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:40:19.958 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 20:40:19.958 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:40:19.958 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:19.958 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:19.968 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:40:19.978 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:40:19.978 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 20:40:20.168 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 20:40:20.168 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:40:20.208 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:20.208 -07 000000431 INF: FPGA: Recv YRDPOS 144769
17-03-17 20:40:20.218 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:40:20.218 -07 000000459 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:20.218 -07 000000459 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 20:40:20.218 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.840 mm, average velocity = 2.126 mm/sec
17-03-17 20:40:21.168 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:21.168 -07 000000433 INF: FPGA: Recv YRDPOS 144769
17-03-17 20:40:21.178 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:21.178 -07 000000459 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:21.198 -07 000000459 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:40:21.198 -07 000000459 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:40:21.198 -07 000000459 INF: Y Motor: Moved to 70.6880 after 1432 ms (table move)
17-03-17 20:40:21.198 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175010 mm (DAC = 38231)
17-03-17 20:40:21.198 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:21.208 -07 000000512 INF: FPGA: Recv ZSGSRD 36537
17-03-17 20:40:21.208 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:40:21.208 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:21.208 -07 000000448 INF: FPGA: Recv ZSGSRD 36535
17-03-17 20:40:21.218 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:21.218 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:21.218 -07 000000448 INF: FPGA: Recv ZSGSRD 36536
17-03-17 20:40:21.228 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:21.228 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:21.228 -07 000000512 INF: FPGA: Recv ZSGSRD 36534
17-03-17 20:40:21.238 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:21.238 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:21.238 -07 000000512 INF: FPGA: Recv ZSGSRD 36535
17-03-17 20:40:21.248 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:21.248 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:21.248 -07 000000415 INF: FPGA: Recv ZSGSRD 36535
17-03-17 20:40:21.258 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:21.258 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:21.258 -07 000000415 INF: FPGA: Recv ZSGSRD 36532
17-03-17 20:40:21.268 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:40:21.268 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:21.268 -07 000000415 INF: FPGA: Recv ZSGSRD 36523
17-03-17 20:40:21.278 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:21.278 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:21.278 -07 000000512 INF: FPGA: Recv ZSGSRD 36535
17-03-17 20:40:21.288 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:21.288 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:21.288 -07 000000415 INF: FPGA: Recv ZSGSRD 36534
17-03-17 20:40:21.298 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:21.298 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:21.298 -07 000000459 INF: FPGA: Recv ZPIEZORD 32876
17-03-17 20:40:21.308 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:21.308 -07 000000429 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.834 V. Piezo Error = -8.1 V.
17-03-17 20:40:21.308 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36534 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36535 (-174.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36523 (-174.1 uncal um), Max = 36537 (-174.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 20:40:21.308 -07 000000429 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36534, posNoise = 3, negNoise = 11
17-03-17 20:40:21.308 -07 000000429 INF: Z Motor: After move to -0.175010, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:21.308 -07 000000429 INF: Z Motor: Settle wait time = 1436 ms, measure time = 103 ms (allowed 150 ms), total time = 1539 ms
17-03-17 20:40:21.308 -07 000000429 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:40:21.358 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 20:40:21.358 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:40:21.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:21.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:21.358 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:21.358 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:21.358 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:40:21.358 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:21.358 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:21.358 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:40:21.368 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:40:21.368 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:40:21.378 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 20:40:21.378 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:40:21.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:40:21.428 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:40:21.628 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:40:21.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:40:21.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:40:21.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617610680, 0x0, 559484976) start.
17-03-17 20:40:21.668 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:40:21.668 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:40:21.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:40:21.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617610680, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:40:21.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:21.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:40:21.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:40:21.768 -07 000000431 INF: Autofocus start
17-03-17 20:40:21.768 -07 000000431 INF: MeasureProfile start
17-03-17 20:40:21.768 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:21.768 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:21.778 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:40:21.778 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:40:21.778 -07 000000431 INF: MeasureProfile done
17-03-17 20:40:21.778 -07 000000431 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:40:21.778 -07 000000431 INF: Autofocus finished
17-03-17 20:40:21.808 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:40:21.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:40:21.978 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:40:21.978 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:40:21.978 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.17502551839823. ----------
17-03-17 20:40:21.978 -07 000000610 INF: Cycle	41	Tile	14	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:40:21.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36745, sync = True, waitForSettling = True)
17-03-17 20:40:21.988 -07 000000610 INF: Z Motor: Moving to -0.168208 mm, started at -0.175026 mm, distance = 6.82 um
17-03-17 20:40:21.988 -07 000000610 INF: FPGA: Xmit ZDACW 36745\n [Z Motor]
17-03-17 20:40:21.988 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:40:21.998 -07 000000610 INF: FPGA: 'ZDACW 36745' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:21.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:21.998 -07 000000459 INF: FPGA: Recv ZDACR 36745
17-03-17 20:40:22.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:22.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:40:22.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:22.158 -07 000000415 INF: FPGA: Recv ZSGSRD 35479
17-03-17 20:40:22.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:22.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:22.168 -07 000000459 INF: FPGA: Recv ZSGSRD 35467
17-03-17 20:40:22.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:22.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:22.178 -07 000000415 INF: FPGA: Recv ZSGSRD 35474
17-03-17 20:40:22.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:22.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:22.188 -07 000000431 INF: FPGA: Recv ZSGSRD 35475
17-03-17 20:40:22.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:22.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:22.198 -07 000000431 INF: FPGA: Recv ZSGSRD 35473
17-03-17 20:40:22.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:22.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:22.208 -07 000000459 INF: FPGA: Recv ZSGSRD 35475
17-03-17 20:40:22.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:22.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:22.218 -07 000000431 INF: FPGA: Recv ZSGSRD 35473
17-03-17 20:40:22.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:22.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:22.228 -07 000000431 INF: FPGA: Recv ZSGSRD 35479
17-03-17 20:40:22.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:22.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:22.238 -07 000000415 INF: FPGA: Recv ZSGSRD 35478
17-03-17 20:40:22.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:22.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:22.248 -07 000000415 INF: FPGA: Recv ZSGSRD 35476
17-03-17 20:40:22.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:22.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:22.258 -07 000000415 INF: FPGA: Recv ZPIEZORD 31454
17-03-17 20:40:22.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:22.268 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.607 V. Piezo Error = -8.9 V.
17-03-17 20:40:22.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35475 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35475 (-167.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35467 (-167.3 uncal um), Max = 35479 (-167.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:40:22.268 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35475, posNoise = 4, negNoise = 8
17-03-17 20:40:22.268 -07 000000610 INF: Z Motor: After move to -0.168208, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:22.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:40:22.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:22.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:22.268 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:22.268 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:40:22.268 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:22.268 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:22.268 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:22.268 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:40:22.268 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:40:22.268 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:40:22.268 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:40:22.268 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:40:22.268 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:40:22.268 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:40:22.278 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:40:22.278 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:40:22.278 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:40:22.278 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:40:22.288 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:40:22.288 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:40:22.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 36922 150\n [Camera]
17-03-17 20:40:22.488 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:40:22.908 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:40:22.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:40:22.908 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:22.908 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:22.908 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:40:22.908 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:40:22.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:40:22.908 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:22.908 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:22.908 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:40:23.098 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36922 803
17-03-17 20:40:23.248 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:40:23.308 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:40:23.308 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:40:23.308 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:23.308 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:40:23.308 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:40:23.308 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:23.308 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:23.308 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:40:23.308 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:23.318 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:40:23.448 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:40:23.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:40:23.448 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:23.448 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:23.448 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:40:23.448 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:40:23.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:40:23.458 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:23.458 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:23.458 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:40:23.638 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:40:23.638 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:40:23.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 36922 150' command took 2 ms to send, 1349 ms to get response, and 1354 ms overall
17-03-17 20:40:23.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:40:23.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.168222277740105. ------
17-03-17 20:40:23.648 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:23.648 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17483 mm
17-03-17 20:40:23.648 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:40:23.648 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:23.648 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38192, sync = True, waitForSettling = False)
17-03-17 20:40:23.648 -07 000000431 INF: Z Motor: Moving to -0.174832 mm, started at -0.168222 mm, distance = -6.61 um
17-03-17 20:40:23.648 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:40:23.648 -07 000000459 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 20:40:23.658 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:40:23.658 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:23.658 -07 000000501 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:40:23.668 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:40:23.668 -07 000000459 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:23.668 -07 000000431 INF: FPGA: Xmit ZDACW 38192\n [Z Motor]
17-03-17 20:40:23.778 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:40:23.778 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:40:23.778 -07 000000431 INF: FPGA: 'ZDACW 38192' command took 1 ms to send, 0 ms to get response, and 124 ms overall
17-03-17 20:40:23.778 -07 000000459 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:40:23.778 -07 000000459 INF: Y Motor: Moving 1351 steps-30
17-03-17 20:40:23.788 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:40:23.798 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:23.798 -07 000000501 INF: FPGA: Recv ZDACR 38192
17-03-17 20:40:23.808 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:40:23.808 -07 000000431 INF: Z Motor: MoveAbsStepped took 152 ms (did NOT wait for settling yet))
17-03-17 20:40:23.848 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:40:23.848 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:40:23.848 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:23.848 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:40:23.848 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:40:23.848 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:23.858 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:23.858 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:40:23.858 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:40:23.858 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:40:23.978 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:40:23.978 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 324 ms overall
17-03-17 20:40:24.158 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 20:40:24.158 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 20:40:24.198 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:24.198 -07 000000512 INF: FPGA: Recv YRDPOS 146470
17-03-17 20:40:24.208 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:40:24.208 -07 000000459 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:24.208 -07 000000459 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:40:24.208 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.194 mm/sec
17-03-17 20:40:24.578 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.988112,
17-03-17 20:40:25.158 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:25.158 -07 000000478 INF: FPGA: Recv YRDPOS 146470
17-03-17 20:40:25.168 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:25.168 -07 000000459 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:25.188 -07 000000459 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:40:25.188 -07 000000459 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:40:25.188 -07 000000459 INF: Y Motor: Moved to 71.5186 after 1535 ms (table move)
17-03-17 20:40:25.188 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174832 mm (DAC = 38192)
17-03-17 20:40:25.188 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:25.188 -07 000000459 INF: FPGA: Recv ZSGSRD 36505
17-03-17 20:40:25.198 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:40:25.198 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:25.198 -07 000000459 INF: FPGA: Recv ZSGSRD 36500
17-03-17 20:40:25.208 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:25.208 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:25.208 -07 000000459 INF: FPGA: Recv ZSGSRD 36503
17-03-17 20:40:25.218 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:25.218 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:25.218 -07 000000501 INF: FPGA: Recv ZSGSRD 36506
17-03-17 20:40:25.228 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:25.228 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:25.228 -07 000000476 INF: FPGA: Recv ZSGSRD 36509
17-03-17 20:40:25.238 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:25.238 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:25.238 -07 000000476 INF: FPGA: Recv ZSGSRD 36507
17-03-17 20:40:25.248 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:25.248 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:25.248 -07 000000476 INF: FPGA: Recv ZSGSRD 36508
17-03-17 20:40:25.258 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:25.258 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:25.258 -07 000000476 INF: FPGA: Recv ZSGSRD 36504
17-03-17 20:40:25.268 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:25.268 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:25.268 -07 000000476 INF: FPGA: Recv ZSGSRD 36500
17-03-17 20:40:25.278 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:25.278 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:25.278 -07 000000476 INF: FPGA: Recv ZSGSRD 36501
17-03-17 20:40:25.288 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:25.288 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:25.288 -07 000000476 INF: FPGA: Recv ZPIEZORD 32835
17-03-17 20:40:25.298 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:25.298 -07 000000433 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -8.1 V.
17-03-17 20:40:25.298 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.8 um, Read 10 ADC samples: Avg = 36504 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36504 (-173.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36500 (-173.9 uncal um), Max = 36509 (-174.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:40:25.298 -07 000000433 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36504, posNoise = 5, negNoise = 4
17-03-17 20:40:25.298 -07 000000433 INF: Z Motor: After move to -0.174832, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:25.298 -07 000000433 INF: Z Motor: Settle wait time = 1538 ms, measure time = 106 ms (allowed 150 ms), total time = 1644 ms
17-03-17 20:40:25.298 -07 000000433 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:40:25.348 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1695 ms
17-03-17 20:40:25.348 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:40:25.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:25.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:25.348 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:25.348 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:25.348 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:40:25.348 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:25.358 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:25.358 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:40:25.358 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:40:25.358 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:40:25.368 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:40:25.368 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:40:25.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:40:25.418 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:40:25.618 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:40:25.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:40:25.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:40:25.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:40:25.658 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:40:25.658 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 20:40:25.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 20:40:25.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:40:25.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:25.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:40:25.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:40:25.758 -07 000000433 INF: Autofocus start
17-03-17 20:40:25.758 -07 000000433 INF: MeasureProfile start
17-03-17 20:40:25.758 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:25.768 -07 000000433 INF: MeasureProfile done
17-03-17 20:40:25.768 -07 000000433 INF: X=-32  Z correction [um]=-0.2344
17-03-17 20:40:25.768 -07 000000433 INF: Autofocus finished
17-03-17 20:40:25.768 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:25.768 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 8 ms to get response, and 15 ms overall
17-03-17 20:40:25.768 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:40:25.978 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:40:25.978 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 202 ms to get response, and 203 ms overall
17-03-17 20:40:25.978 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174832792033977. ----------
17-03-17 20:40:25.988 -07 000000610 INF: Cycle	41	Tile	15	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:40:25.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36653, sync = True, waitForSettling = True)
17-03-17 20:40:25.988 -07 000000610 INF: Z Motor: Moving to -0.167787 mm, started at -0.174833 mm, distance = 7.05 um
17-03-17 20:40:25.988 -07 000000610 INF: FPGA: Xmit ZDACW 36653\n [Z Motor]
17-03-17 20:40:25.988 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:40:25.998 -07 000000610 INF: FPGA: 'ZDACW 36653' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:40:25.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:25.998 -07 000000433 INF: FPGA: Recv ZDACR 36653
17-03-17 20:40:26.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:26.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:40:26.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:26.158 -07 000000476 INF: FPGA: Recv ZSGSRD 35407
17-03-17 20:40:26.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:26.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:26.168 -07 000000476 INF: FPGA: Recv ZSGSRD 35412
17-03-17 20:40:26.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:26.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:26.178 -07 000000433 INF: FPGA: Recv ZSGSRD 35404
17-03-17 20:40:26.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:26.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:26.188 -07 000000433 INF: FPGA: Recv ZSGSRD 35410
17-03-17 20:40:26.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:26.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:26.198 -07 000000541 INF: FPGA: Recv ZSGSRD 35409
17-03-17 20:40:26.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:26.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:26.208 -07 000000541 INF: FPGA: Recv ZSGSRD 35413
17-03-17 20:40:26.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:26.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:26.218 -07 000000382 INF: FPGA: Recv ZSGSRD 35410
17-03-17 20:40:26.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:26.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:26.228 -07 000000433 INF: FPGA: Recv ZSGSRD 35407
17-03-17 20:40:26.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:26.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:26.238 -07 000000541 INF: FPGA: Recv ZSGSRD 35411
17-03-17 20:40:26.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:26.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:26.248 -07 000000623 INF: FPGA: Recv ZSGSRD 35407
17-03-17 20:40:26.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:26.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:26.258 -07 000000382 INF: FPGA: Recv ZPIEZORD 31354
17-03-17 20:40:26.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:26.268 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.593 V. Piezo Error = -8.9 V.
17-03-17 20:40:26.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35409 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35410 (-166.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35404 (-166.9 uncal um), Max = 35413 (-167.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:40:26.268 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35409, posNoise = 4, negNoise = 5
17-03-17 20:40:26.268 -07 000000610 INF: Z Motor: After move to -0.167787, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:26.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:40:26.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:26.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:26.268 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:26.268 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:26.268 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:40:26.268 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:26.268 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:40:26.268 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:40:26.268 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:26.268 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:40:26.268 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:40:26.268 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:40:26.268 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:40:26.268 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:40:26.268 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:40:26.268 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:40:26.278 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:40:26.278 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:40:26.278 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:40:26.278 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:40:26.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 36830 150\n [Camera]
17-03-17 20:40:26.488 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:40:26.808 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:40:26.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:40:26.908 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:40:26.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:40:26.908 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:26.908 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:40:26.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:40:26.908 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:26.908 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:26.908 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:40:26.908 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:26.908 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:40:27.098 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36830 803
17-03-17 20:40:27.248 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:40:27.288 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:40:27.288 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:40:27.288 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:27.288 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:40:27.288 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:40:27.288 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:27.298 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:40:27.298 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:40:27.298 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:40:27.298 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:40:27.448 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:40:27.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:40:27.448 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:27.448 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:40:27.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:40:27.448 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:27.458 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:27.458 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1460146392, 0x0, 391868352) start.
17-03-17 20:40:27.458 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:27.458 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:40:27.638 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:40:27.638 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:40:27.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 36830 150' command took 2 ms to send, 1346 ms to get response, and 1353 ms overall
17-03-17 20:40:27.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:40:27.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167798279738749. ------
17-03-17 20:40:27.768 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:27.768 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17381 mm
17-03-17 20:40:27.768 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:40:27.768 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:40:27.768 -07 000000433 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 20:40:27.768 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 37969, sync = True, waitForSettling = False)
17-03-17 20:40:27.768 -07 000000541 INF: Z Motor: Moving to -0.173811 mm, started at -0.167798 mm, distance = -6.01 um
17-03-17 20:40:27.768 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:27.778 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:40:27.778 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:27.778 -07 000000415 INF: FPGA: Recv YRDPOS 146470
17-03-17 20:40:27.788 -07 000000541 INF: FPGA: Xmit ZDACW 37969\n [Z Motor]
17-03-17 20:40:27.788 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:40:27.788 -07 000000433 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:27.788 -07 000000433 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:40:27.788 -07 000000433 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:40:27.788 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:40:27.798 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:40:27.798 -07 000000541 INF: FPGA: 'ZDACW 37969' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:40:27.808 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:40:27.818 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:27.818 -07 000000627 INF: FPGA: Recv ZDACR 37969
17-03-17 20:40:27.828 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:40:27.828 -07 000000541 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 20:40:27.838 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:40:27.838 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1460146392, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 20:40:27.838 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:40:27.838 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:27.838 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:40:27.838 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:27.848 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:40:27.848 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:40:27.848 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:40:27.858 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:40:27.998 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:40:27.998 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:40:28.178 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 20:40:28.188 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-17 20:40:28.218 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:28.218 -07 000000541 INF: FPGA: Recv YRDPOS 148171
17-03-17 20:40:28.228 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:40:28.228 -07 000000433 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:28.228 -07 000000433 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:40:28.228 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.844 mm, average velocity = 2.115 mm/sec
17-03-17 20:40:29.178 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:29.178 -07 000000382 INF: FPGA: Recv YRDPOS 148171
17-03-17 20:40:29.188 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:29.188 -07 000000433 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:29.208 -07 000000433 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:40:29.208 -07 000000433 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:40:29.208 -07 000000433 INF: Y Motor: Moved to 72.3491 after 1437 ms (table move)
17-03-17 20:40:29.208 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173811 mm (DAC = 37969)
17-03-17 20:40:29.208 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:29.218 -07 000000541 INF: FPGA: Recv ZSGSRD 36347
17-03-17 20:40:29.218 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:40:29.218 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:29.218 -07 000000576 INF: FPGA: Recv ZSGSRD 36350
17-03-17 20:40:29.228 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:29.228 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:29.228 -07 000000541 INF: FPGA: Recv ZSGSRD 36345
17-03-17 20:40:29.238 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:29.238 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:29.238 -07 000000576 INF: FPGA: Recv ZSGSRD 36353
17-03-17 20:40:29.248 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:29.248 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:29.248 -07 000000576 INF: FPGA: Recv ZSGSRD 36351
17-03-17 20:40:29.258 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:29.258 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:29.258 -07 000000478 INF: FPGA: Recv ZSGSRD 36352
17-03-17 20:40:29.268 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:29.268 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:29.268 -07 000000478 INF: FPGA: Recv ZSGSRD 36340
17-03-17 20:40:29.278 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:29.278 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:29.278 -07 000000576 INF: FPGA: Recv ZSGSRD 36340
17-03-17 20:40:29.288 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:29.288 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:30.238 -07 000000627 INF: FPGA: Recv ZSGSRD 36346
17-03-17 20:40:30.238 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 941 ms to get response, and 951 ms overall
17-03-17 20:40:30.238 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:30.238 -07 000000627 INF: FPGA: Recv ZSGSRD 36349
17-03-17 20:40:30.248 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:40:30.248 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:30.248 -07 000000433 INF: FPGA: Recv ZPIEZORD 32635
17-03-17 20:40:30.258 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:30.258 -07 000000623 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.794 V. Piezo Error = -8.2 V.
17-03-17 20:40:30.258 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36347 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36348 (-172.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36340 (-172.9 uncal um), Max = 36353 (-173.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:40:30.258 -07 000000623 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36347, posNoise = 6, negNoise = 7
17-03-17 20:40:30.258 -07 000000623 INF: Z Motor: After move to -0.173811, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:30.258 -07 000000623 INF: Z Motor: Settle wait time = 1442 ms, measure time = 1043 ms (allowed 150 ms), total time = 2485 ms
17-03-17 20:40:30.258 -07 000000623 INF: Z Motor: Warning: Actual position measuring time = 1043 ms, longer than max expected time of 150 ms
17-03-17 20:40:30.258 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2488 ms
17-03-17 20:40:30.258 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:40:30.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:30.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:30.258 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:30.258 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:30.258 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:40:30.258 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:30.258 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:40:30.258 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:40:30.268 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:40:30.268 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:40:30.268 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:40:30.268 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:40:30.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:40:30.328 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:40:30.518 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:40:30.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:40:30.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:40:30.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:40:30.558 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:40:30.558 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 20:40:30.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:40:30.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:40:30.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:30.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:40:30.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:40:30.658 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:30.658 -07 000000433 INF: Autofocus start
17-03-17 20:40:30.658 -07 000000433 INF: MeasureProfile start
17-03-17 20:40:30.658 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:30.668 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:40:30.668 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:40:30.668 -07 000000433 INF: MeasureProfile done
17-03-17 20:40:30.668 -07 000000433 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:40:30.668 -07 000000433 INF: Autofocus finished
17-03-17 20:40:30.858 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.978563,
17-03-17 20:40:30.868 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:40:30.868 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 20:40:30.868 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.17382419072772. ----------
17-03-17 20:40:30.878 -07 000000610 INF: Cycle	41	Tile	16	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:40:30.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36484, sync = True, waitForSettling = True)
17-03-17 20:40:30.878 -07 000000610 INF: Z Motor: Moving to -0.167013 mm, started at -0.173824 mm, distance = 6.81 um
17-03-17 20:40:30.898 -07 000000610 INF: FPGA: Xmit ZDACW 36484\n [Z Motor]
17-03-17 20:40:30.898 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:40:30.908 -07 000000610 INF: FPGA: 'ZDACW 36484' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:40:30.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:30.908 -07 000000415 INF: FPGA: Recv ZDACR 36484
17-03-17 20:40:30.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:30.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:40:31.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:31.068 -07 000000382 INF: FPGA: Recv ZSGSRD 35290
17-03-17 20:40:31.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:31.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:31.078 -07 000000415 INF: FPGA: Recv ZSGSRD 35290
17-03-17 20:40:31.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:31.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:31.088 -07 000000478 INF: FPGA: Recv ZSGSRD 35287
17-03-17 20:40:31.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:31.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:31.098 -07 000000382 INF: FPGA: Recv ZSGSRD 35293
17-03-17 20:40:31.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:31.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:31.108 -07 000000623 INF: FPGA: Recv ZSGSRD 35292
17-03-17 20:40:31.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:31.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:31.118 -07 000000382 INF: FPGA: Recv ZSGSRD 35287
17-03-17 20:40:31.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:31.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:31.128 -07 000000541 INF: FPGA: Recv ZSGSRD 35294
17-03-17 20:40:31.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:31.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:31.138 -07 000000627 INF: FPGA: Recv ZSGSRD 35286
17-03-17 20:40:31.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:31.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:31.148 -07 000000576 INF: FPGA: Recv ZSGSRD 35292
17-03-17 20:40:31.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:31.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:31.158 -07 000000415 INF: FPGA: Recv ZSGSRD 35284
17-03-17 20:40:31.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:31.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:31.168 -07 000000576 INF: FPGA: Recv ZPIEZORD 31194
17-03-17 20:40:31.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:31.178 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.567 V. Piezo Error = -9.0 V.
17-03-17 20:40:31.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35290 (-166.2 uncal um), Error = 0.8 uncal um, Median = 35290 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35284 (-166.1 uncal um), Max = 35294 (-166.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:40:31.178 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35290, posNoise = 4, negNoise = 6
17-03-17 20:40:31.178 -07 000000610 INF: Z Motor: After move to -0.167013, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:31.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 298 ms)
17-03-17 20:40:31.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:31.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:31.178 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:31.178 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:40:31.178 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:40:31.178 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:31.178 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:40:31.178 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:31.178 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:40:31.178 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:40:31.178 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:31.178 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:40:31.188 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:40:31.188 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:40:31.188 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:40:31.188 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:40:31.198 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:40:31.198 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:40:31.198 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:40:31.198 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:40:31.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 36661 150\n [Camera]
17-03-17 20:40:31.398 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:40:31.808 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:40:31.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:40:31.818 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:40:31.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:40:31.818 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:31.818 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:31.818 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:40:31.818 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:40:31.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:40:31.828 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:31.828 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:31.828 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:40:32.008 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36661 803
17-03-17 20:40:32.158 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:40:32.218 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:40:32.218 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:40:32.218 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:32.218 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:32.218 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:40:32.228 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:40:32.228 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:40:32.228 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:32.228 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:32.238 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:40:32.358 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:40:32.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:40:32.358 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:32.368 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:40:32.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:40:32.368 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:32.368 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:32.368 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:40:32.368 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:32.368 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 20:40:32.548 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:40:32.548 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:40:32.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 36661 150' command took 2 ms to send, 1349 ms to get response, and 1353 ms overall
17-03-17 20:40:32.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:40:32.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.167033798493879. ------
17-03-17 20:40:32.558 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17348 mm
17-03-17 20:40:32.558 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:40:32.558 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:32.568 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:40:32.568 -07 000000627 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 20:40:32.568 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:32.568 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 37897, sync = True, waitForSettling = False)
17-03-17 20:40:32.568 -07 000000478 INF: Z Motor: Moving to -0.173481 mm, started at -0.167034 mm, distance = -6.45 um
17-03-17 20:40:32.568 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:32.568 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:40:32.568 -07 000000429 INF: FPGA: Recv YRDPOS 148171
17-03-17 20:40:32.578 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:32.578 -07 000000627 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:32.578 -07 000000627 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:40:32.578 -07 000000627 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:40:32.578 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:40:32.588 -07 000000478 INF: FPGA: Xmit ZDACW 37897\n [Z Motor]
17-03-17 20:40:32.588 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:40:32.598 -07 000000478 INF: FPGA: 'ZDACW 37897' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:40:32.598 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:40:32.608 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:32.608 -07 000000382 INF: FPGA: Recv ZDACR 37897
17-03-17 20:40:32.618 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:40:32.618 -07 000000478 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 20:40:32.748 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:40:32.748 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:40:32.748 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:32.748 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:32.758 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:40:32.758 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:40:32.758 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:40:32.758 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:32.758 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:32.758 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:40:32.778 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:40:32.778 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:40:32.968 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:40:32.968 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:40:33.008 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:33.008 -07 000000623 INF: FPGA: Recv YRDPOS 149863
17-03-17 20:40:33.018 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:40:33.018 -07 000000627 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:33.018 -07 000000627 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 20:40:33.018 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.119 mm/sec
17-03-17 20:40:33.968 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:33.968 -07 000000429 INF: FPGA: Recv YRDPOS 149864
17-03-17 20:40:33.978 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:33.978 -07 000000627 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:33.998 -07 000000627 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:40:33.998 -07 000000627 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:40:33.998 -07 000000627 INF: Y Motor: Moved to 73.1758 after 1432 ms (table move)
17-03-17 20:40:33.998 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173481 mm (DAC = 37897)
17-03-17 20:40:33.998 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:33.998 -07 000000627 INF: FPGA: Recv ZSGSRD 36295
17-03-17 20:40:34.008 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:40:34.008 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:34.008 -07 000000433 INF: FPGA: Recv ZSGSRD 36298
17-03-17 20:40:34.018 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:40:34.018 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:34.018 -07 000000551 INF: FPGA: Recv ZSGSRD 36292
17-03-17 20:40:34.028 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:34.028 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:34.028 -07 000000576 INF: FPGA: Recv ZSGSRD 36298
17-03-17 20:40:34.038 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:34.038 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:34.038 -07 000000551 INF: FPGA: Recv ZSGSRD 36301
17-03-17 20:40:34.048 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:34.048 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:34.048 -07 000000551 INF: FPGA: Recv ZSGSRD 36296
17-03-17 20:40:34.058 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:34.058 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:34.058 -07 000000478 INF: FPGA: Recv ZSGSRD 36294
17-03-17 20:40:34.068 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:34.068 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:34.068 -07 000000551 INF: FPGA: Recv ZSGSRD 36293
17-03-17 20:40:34.078 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:34.078 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:34.078 -07 000000478 INF: FPGA: Recv ZSGSRD 36293
17-03-17 20:40:34.088 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:34.088 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:34.088 -07 000000478 INF: FPGA: Recv ZSGSRD 36296
17-03-17 20:40:34.098 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:34.098 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:34.098 -07 000000478 INF: FPGA: Recv ZPIEZORD 32567
17-03-17 20:40:34.108 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:34.108 -07 000000415 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.783 V. Piezo Error = -8.3 V.
17-03-17 20:40:34.108 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36296 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36296 (-172.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36292 (-172.6 uncal um), Max = 36301 (-172.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:40:34.108 -07 000000415 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36296, posNoise = 5, negNoise = 4
17-03-17 20:40:34.108 -07 000000415 INF: Z Motor: After move to -0.173481, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:34.108 -07 000000415 INF: Z Motor: Settle wait time = 1435 ms, measure time = 104 ms (allowed 150 ms), total time = 1539 ms
17-03-17 20:40:34.108 -07 000000415 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:40:34.158 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 20:40:34.158 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:40:34.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:34.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:34.168 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:34.168 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:34.168 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:40:34.168 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:34.168 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:34.168 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:40:34.178 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:40:34.178 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:40:34.178 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:40:34.178 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:40:34.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:40:34.228 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:40:34.428 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:40:34.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:40:34.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:40:34.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617610680, 0x0, 559484976) start.
17-03-17 20:40:34.468 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:40:34.468 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 20:40:34.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 20:40:34.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617610680, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:40:34.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:34.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:40:34.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:40:34.568 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:34.568 -07 000000382 INF: Autofocus start
17-03-17 20:40:34.568 -07 000000382 INF: MeasureProfile start
17-03-17 20:40:34.568 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:34.578 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:40:34.578 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:40:34.578 -07 000000382 INF: MeasureProfile done
17-03-17 20:40:34.578 -07 000000382 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:40:34.578 -07 000000382 INF: Autofocus finished
17-03-17 20:40:34.778 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:40:34.778 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:40:34.778 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173496555908491. ----------
17-03-17 20:40:34.778 -07 000000610 INF: Cycle	41	Tile	17	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:40:34.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36430, sync = True, waitForSettling = True)
17-03-17 20:40:34.788 -07 000000610 INF: Z Motor: Moving to -0.166766 mm, started at -0.173497 mm, distance = 6.73 um
17-03-17 20:40:34.788 -07 000000610 INF: FPGA: Xmit ZDACW 36430\n [Z Motor]
17-03-17 20:40:34.788 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:40:34.798 -07 000000610 INF: FPGA: 'ZDACW 36430' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:40:34.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:34.798 -07 000000429 INF: FPGA: Recv ZDACR 36430
17-03-17 20:40:34.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:34.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:40:34.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:34.958 -07 000000431 INF: FPGA: Recv ZSGSRD 35254
17-03-17 20:40:34.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:34.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:34.968 -07 000000431 INF: FPGA: Recv ZSGSRD 35249
17-03-17 20:40:34.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:34.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:34.978 -07 000000431 INF: FPGA: Recv ZSGSRD 35248
17-03-17 20:40:34.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:34.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:34.988 -07 000000382 INF: FPGA: Recv ZSGSRD 35253
17-03-17 20:40:34.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:34.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:34.998 -07 000000382 INF: FPGA: Recv ZSGSRD 35249
17-03-17 20:40:35.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:35.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:35.008 -07 000000431 INF: FPGA: Recv ZSGSRD 35252
17-03-17 20:40:35.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:35.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:35.018 -07 000000431 INF: FPGA: Recv ZSGSRD 35245
17-03-17 20:40:35.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:35.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:35.028 -07 000000431 INF: FPGA: Recv ZSGSRD 35252
17-03-17 20:40:35.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:35.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:35.038 -07 000000576 INF: FPGA: Recv ZSGSRD 35255
17-03-17 20:40:35.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:35.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:35.048 -07 000000576 INF: FPGA: Recv ZSGSRD 35251
17-03-17 20:40:35.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:35.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:35.058 -07 000000431 INF: FPGA: Recv ZPIEZORD 31171
17-03-17 20:40:35.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:35.068 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.559 V. Piezo Error = -9.0 V.
17-03-17 20:40:35.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35251 (-165.9 uncal um), Error = 0.8 uncal um, Median = 35252 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35245 (-165.9 uncal um), Max = 35255 (-165.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:40:35.068 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35251, posNoise = 4, negNoise = 6
17-03-17 20:40:35.068 -07 000000610 INF: Z Motor: After move to -0.166766, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:35.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:40:35.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:35.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:35.068 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:35.068 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:35.068 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:40:35.068 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:40:35.068 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:40:35.068 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:35.068 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:40:35.068 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:40:35.068 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:35.068 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:40:35.078 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:40:35.078 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:40:35.078 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:40:35.078 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:40:35.088 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:40:35.088 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:40:35.088 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:40:35.088 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:40:35.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 36607 150\n [Camera]
17-03-17 20:40:35.298 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:40:35.708 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:40:35.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:40:35.708 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:35.708 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:35.708 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:40:35.718 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:40:35.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:40:35.718 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:35.718 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:35.718 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:40:35.908 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36607 803
17-03-17 20:40:36.058 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:40:36.108 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:40:36.108 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:40:36.108 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:36.108 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:40:36.108 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:40:36.108 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:36.118 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:40:36.118 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:40:36.118 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:40:36.128 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:40:36.238 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.985358,
17-03-17 20:40:36.258 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:40:36.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:40:36.258 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:36.258 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:36.258 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:40:36.258 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:40:36.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:40:36.258 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:36.258 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:36.258 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:40:36.448 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:40:36.448 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:40:36.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 36607 150' command took 2 ms to send, 1344 ms to get response, and 1353 ms overall
17-03-17 20:40:36.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:40:36.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.16678325422035. ------
17-03-17 20:40:36.458 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:36.558 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:36.558 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 109 ms overall
17-03-17 20:40:36.568 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17308 mm
17-03-17 20:40:36.568 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:40:36.568 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:40:36.568 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:40:36.568 -07 000000382 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 20:40:36.568 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37810, sync = True, waitForSettling = False)
17-03-17 20:40:36.568 -07 000000431 INF: Z Motor: Moving to -0.173083 mm, started at -0.166783 mm, distance = -6.30 um
17-03-17 20:40:36.578 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:36.588 -07 000000431 INF: FPGA: Xmit ZDACW 37810\n [Z Motor]
17-03-17 20:40:36.658 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:40:36.658 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:40:36.658 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:36.658 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:40:36.658 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:40:36.658 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:36.658 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:36.658 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:40:36.658 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:40:36.668 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:40:36.668 -07 000000627 INF: FPGA: Recv YRDPOS 149864
17-03-17 20:40:36.668 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:40:36.668 -07 000000431 INF: FPGA: 'ZDACW 37810' command took 0 ms to send, 79 ms to get response, and 105 ms overall
17-03-17 20:40:36.668 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:36.678 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 89 ms to get response, and 105 ms overall
17-03-17 20:40:36.678 -07 000000382 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:36.678 -07 000000382 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:40:36.678 -07 000000382 INF: Y Motor: Moving 1355 steps-35
17-03-17 20:40:36.678 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:40:36.678 -07 000000429 INF: FPGA: Recv ZDACR 37810
17-03-17 20:40:36.678 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:40:36.678 -07 000000431 INF: Z Motor: MoveAbsStepped took 108 ms (did NOT wait for settling yet))
17-03-17 20:40:36.768 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:40:36.768 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 20:40:36.808 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:40:36.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:40:37.048 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 20:40:37.048 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 20:40:37.078 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:37.088 -07 000000429 INF: FPGA: Recv YRDPOS 151567
17-03-17 20:40:37.088 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 20:40:37.088 -07 000000382 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:37.088 -07 000000382 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:40:37.088 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.847 mm, average velocity = 2.240 mm/sec
17-03-17 20:40:38.038 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:38.038 -07 000000459 INF: FPGA: Recv YRDPOS 151567
17-03-17 20:40:38.048 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:38.048 -07 000000382 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:38.058 -07 000000382 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:40:38.058 -07 000000382 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:40:38.058 -07 000000382 INF: Y Motor: Moved to 74.0073 after 1494 ms (table move)
17-03-17 20:40:38.068 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173083 mm (DAC = 37810)
17-03-17 20:40:38.068 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:38.068 -07 000000512 INF: FPGA: Recv ZSGSRD 36232
17-03-17 20:40:38.078 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:38.078 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:38.078 -07 000000431 INF: FPGA: Recv ZSGSRD 36230
17-03-17 20:40:38.088 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:38.088 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:38.088 -07 000000459 INF: FPGA: Recv ZSGSRD 36236
17-03-17 20:40:38.098 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:38.098 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:38.098 -07 000000382 INF: FPGA: Recv ZSGSRD 36237
17-03-17 20:40:38.108 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:38.108 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:38.108 -07 000000512 INF: FPGA: Recv ZSGSRD 36238
17-03-17 20:40:38.118 -07 000000433 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:38.118 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:38.118 -07 000000627 INF: FPGA: Recv ZSGSRD 36226
17-03-17 20:40:38.128 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:38.128 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:38.128 -07 000000431 INF: FPGA: Recv ZSGSRD 36232
17-03-17 20:40:38.138 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:38.138 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:38.138 -07 000000459 INF: FPGA: Recv ZSGSRD 36237
17-03-17 20:40:38.148 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:38.148 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:38.148 -07 000000512 INF: FPGA: Recv ZSGSRD 36228
17-03-17 20:40:38.158 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:38.158 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:38.158 -07 000000429 INF: FPGA: Recv ZSGSRD 36240
17-03-17 20:40:38.168 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:38.168 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:38.168 -07 000000431 INF: FPGA: Recv ZPIEZORD 32481
17-03-17 20:40:38.178 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:38.178 -07 000000433 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.769 V. Piezo Error = -8.3 V.
17-03-17 20:40:38.178 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36234 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36234 (-172.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36226 (-172.2 uncal um), Max = 36240 (-172.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:40:38.178 -07 000000433 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36234, posNoise = 6, negNoise = 8
17-03-17 20:40:38.178 -07 000000433 INF: Z Motor: After move to -0.173083, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:38.178 -07 000000433 INF: Z Motor: Settle wait time = 1497 ms, measure time = 110 ms (allowed 150 ms), total time = 1607 ms
17-03-17 20:40:38.178 -07 000000433 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 20:40:38.218 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1650 ms
17-03-17 20:40:38.218 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:40:38.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:38.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:38.218 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:38.218 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:38.218 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:40:38.218 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:38.218 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:40:38.218 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:40:38.228 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:40:38.228 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:40:38.228 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:40:38.228 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:40:38.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:40:38.278 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:40:38.478 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:40:38.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:40:38.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:40:38.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:40:38.518 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:40:38.518 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 20:40:38.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:40:38.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:40:38.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:38.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:40:38.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:40:38.618 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:38.618 -07 000000512 INF: Autofocus start
17-03-17 20:40:38.618 -07 000000512 INF: MeasureProfile start
17-03-17 20:40:38.618 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:38.628 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:40:38.628 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:40:38.628 -07 000000512 INF: MeasureProfile done
17-03-17 20:40:38.628 -07 000000512 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:40:38.628 -07 000000512 INF: Autofocus finished
17-03-17 20:40:38.828 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:40:38.828 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:40:38.828 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.173098254755701. ----------
17-03-17 20:40:38.828 -07 000000610 INF: Cycle	41	Tile	18	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:40:38.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36343, sync = True, waitForSettling = True)
17-03-17 20:40:38.838 -07 000000610 INF: Z Motor: Moving to -0.166368 mm, started at -0.173098 mm, distance = 6.73 um
17-03-17 20:40:38.838 -07 000000610 INF: FPGA: Xmit ZDACW 36343\n [Z Motor]
17-03-17 20:40:38.838 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:40:38.848 -07 000000610 INF: FPGA: 'ZDACW 36343' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:40:38.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:38.848 -07 000000448 INF: FPGA: Recv ZDACR 36343
17-03-17 20:40:38.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:38.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:40:39.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:39.008 -07 000000448 INF: FPGA: Recv ZSGSRD 35193
17-03-17 20:40:39.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:39.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:39.018 -07 000000448 INF: FPGA: Recv ZSGSRD 35189
17-03-17 20:40:39.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:39.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:39.028 -07 000000501 INF: FPGA: Recv ZSGSRD 35190
17-03-17 20:40:39.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:39.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:39.038 -07 000000627 INF: FPGA: Recv ZSGSRD 35187
17-03-17 20:40:39.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:39.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:39.048 -07 000000501 INF: FPGA: Recv ZSGSRD 35187
17-03-17 20:40:39.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:39.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:39.058 -07 000000448 INF: FPGA: Recv ZSGSRD 35185
17-03-17 20:40:39.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:39.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:39.068 -07 000000627 INF: FPGA: Recv ZSGSRD 35187
17-03-17 20:40:39.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:39.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:39.078 -07 000000448 INF: FPGA: Recv ZSGSRD 35187
17-03-17 20:40:39.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:39.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:39.088 -07 000000627 INF: FPGA: Recv ZSGSRD 35189
17-03-17 20:40:39.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:39.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:39.098 -07 000000512 INF: FPGA: Recv ZSGSRD 35187
17-03-17 20:40:39.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:39.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:39.108 -07 000000448 INF: FPGA: Recv ZPIEZORD 31057
17-03-17 20:40:39.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:39.118 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.546 V. Piezo Error = -9.1 V.
17-03-17 20:40:39.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35188 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35187 (-165.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35185 (-165.5 uncal um), Max = 35193 (-165.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:40:39.118 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35188, posNoise = 5, negNoise = 3
17-03-17 20:40:39.118 -07 000000610 INF: Z Motor: After move to -0.166368, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:39.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:40:39.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:39.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:39.118 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:40:39.118 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:39.118 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:39.118 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:40:39.118 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:40:39.118 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:39.118 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:40:39.118 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:40:39.118 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:40:39.118 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:40:39.128 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:40:39.128 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:40:39.128 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:40:39.128 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:40:39.138 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:40:39.138 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:40:39.138 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:40:39.138 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:40:39.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 36519 150\n [Camera]
17-03-17 20:40:39.338 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:40:39.758 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:40:39.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:40:39.758 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:39.768 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:40:39.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:40:39.768 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:39.768 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:39.768 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:40:39.768 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:39.768 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:40:39.948 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36519 803
17-03-17 20:40:40.098 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:40:40.148 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:40:40.148 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:40:40.148 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:40.148 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:40:40.148 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:40:40.148 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:40.158 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:40:40.158 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:40:40.158 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:40:40.158 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:40:40.308 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:40:40.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:40:40.308 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:40.308 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:40:40.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:40:40.308 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:40.308 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:40.318 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460146392, 0x0, 391868352) start.
17-03-17 20:40:40.318 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:40.318 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:40:40.718 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460146392, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:40:40.718 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:40:40.718 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:40.718 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:40:40.718 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:40:40.718 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:40.718 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:40:40.718 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 20:40:40.718 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:40:40.728 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 20:40:40.728 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:40:40.728 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:40:40.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 36519 150' command took 2 ms to send, 1577 ms to get response, and 1588 ms overall
17-03-17 20:40:40.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:40:40.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.16637852885542. ------
17-03-17 20:40:40.738 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:40.738 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17276 mm
17-03-17 20:40:40.738 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:40:41.738 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:41.738 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 883 ms to get response, and 996 ms overall
17-03-17 20:40:41.738 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:40:41.738 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:40:41.738 -07 000000476 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-17 20:40:41.748 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:42.738 -07 000000551 INF: FPGA: Recv YRDPOS 151568
17-03-17 20:40:42.738 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:40:42.738 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 980 ms to get response, and 997 ms overall
17-03-17 20:40:42.738 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:40:42.738 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-17 20:40:42.738 -07 000000476 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:42.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:40:42.738 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37740, sync = True, waitForSettling = False)
17-03-17 20:40:42.738 -07 000000551 INF: Z Motor: Moving to -0.172763 mm, started at -0.166379 mm, distance = -6.38 um
17-03-17 20:40:42.738 -07 000000551 INF: FPGA: Xmit ZDACW 37740\n [Z Motor]
17-03-17 20:40:42.738 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.989471,
17-03-17 20:40:42.738 -07 000000476 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:40:42.738 -07 000000476 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:40:42.738 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:40:42.748 -07 000000551 INF: FPGA: 'ZDACW 37740' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:40:42.748 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:42.768 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:40:43.738 -07 000000541 INF: FPGA: Recv ZDACR 37740
17-03-17 20:40:43.738 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 20:40:43.738 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 960 ms to get response, and 995 ms overall
17-03-17 20:40:43.738 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 980 ms to get response, and 990 ms overall
17-03-17 20:40:43.738 -07 000000551 INF: Z Motor: MoveAbsStepped took 997 ms (did NOT wait for settling yet))
17-03-17 20:40:43.768 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:43.768 -07 000000551 INF: FPGA: Recv YRDPOS 153255
17-03-17 20:40:43.778 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:40:43.778 -07 000000476 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:43.778 -07 000000476 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 20:40:43.778 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 996 ms, distance = 0.845 mm, average velocity = 0.849 mm/sec
17-03-17 20:40:44.728 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:44.728 -07 000000415 INF: FPGA: Recv YRDPOS 153255
17-03-17 20:40:44.738 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:44.738 -07 000000476 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:44.748 -07 000000476 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:40:44.748 -07 000000476 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:40:44.748 -07 000000476 INF: Y Motor: Moved to 74.8315 after 3014 ms (table move)
17-03-17 20:40:44.758 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172763 mm (DAC = 37740)
17-03-17 20:40:44.758 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:44.758 -07 000000623 INF: FPGA: Recv ZSGSRD 36189
17-03-17 20:40:44.768 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:44.768 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:44.768 -07 000000433 INF: FPGA: Recv ZSGSRD 36187
17-03-17 20:40:44.778 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:44.778 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:44.778 -07 000000415 INF: FPGA: Recv ZSGSRD 36182
17-03-17 20:40:44.788 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:44.788 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:44.788 -07 000000476 INF: FPGA: Recv ZSGSRD 36180
17-03-17 20:40:44.798 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:44.798 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:44.798 -07 000000541 INF: FPGA: Recv ZSGSRD 36182
17-03-17 20:40:44.808 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:44.808 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:44.808 -07 000000551 INF: FPGA: Recv ZSGSRD 36185
17-03-17 20:40:44.818 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:44.818 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:44.818 -07 000000623 INF: FPGA: Recv ZSGSRD 36185
17-03-17 20:40:44.828 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:44.828 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:44.828 -07 000000476 INF: FPGA: Recv ZSGSRD 36180
17-03-17 20:40:44.838 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:44.838 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:44.838 -07 000000623 INF: FPGA: Recv ZSGSRD 36184
17-03-17 20:40:44.848 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:44.848 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:44.848 -07 000000476 INF: FPGA: Recv ZSGSRD 36186
17-03-17 20:40:44.858 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:44.858 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:44.858 -07 000000541 INF: FPGA: Recv ZPIEZORD 32384
17-03-17 20:40:44.868 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:44.868 -07 000000459 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.759 V. Piezo Error = -8.4 V.
17-03-17 20:40:44.868 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36184 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36184 (-171.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36180 (-171.9 uncal um), Max = 36189 (-171.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:40:44.868 -07 000000459 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36184, posNoise = 5, negNoise = 4
17-03-17 20:40:44.868 -07 000000459 INF: Z Motor: After move to -0.172763, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:44.868 -07 000000459 INF: Z Motor: Settle wait time = 2017 ms, measure time = 110 ms (allowed 150 ms), total time = 2127 ms
17-03-17 20:40:44.868 -07 000000459 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 20:40:44.908 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4164 ms
17-03-17 20:40:44.908 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:40:44.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:44.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:44.908 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:44.908 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:44.908 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:40:44.908 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:44.908 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:44.908 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:40:44.918 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:40:44.918 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:40:44.928 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:40:44.928 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:40:44.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:40:44.978 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:40:45.178 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:40:45.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:40:45.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:40:45.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:40:45.218 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:40:45.218 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 20:40:45.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:40:45.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:40:45.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:45.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:40:45.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:40:45.318 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:45.318 -07 000000459 INF: Autofocus start
17-03-17 20:40:45.318 -07 000000459 INF: MeasureProfile start
17-03-17 20:40:45.318 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:45.328 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:40:45.328 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:40:45.328 -07 000000459 INF: MeasureProfile done
17-03-17 20:40:45.328 -07 000000459 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:40:45.328 -07 000000459 INF: Autofocus finished
17-03-17 20:40:45.528 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:40:45.528 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:40:45.528 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.172777044148613. ----------
17-03-17 20:40:45.538 -07 000000610 INF: Cycle	41	Tile	19	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:40:45.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36237, sync = True, waitForSettling = True)
17-03-17 20:40:45.538 -07 000000610 INF: Z Motor: Moving to -0.165882 mm, started at -0.172777 mm, distance = 6.89 um
17-03-17 20:40:45.538 -07 000000610 INF: FPGA: Xmit ZDACW 36237\n [Z Motor]
17-03-17 20:40:45.538 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:40:45.548 -07 000000610 INF: FPGA: 'ZDACW 36237' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:40:45.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:45.548 -07 000000551 INF: FPGA: Recv ZDACR 36237
17-03-17 20:40:45.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:45.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:40:45.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:45.708 -07 000000478 INF: FPGA: Recv ZSGSRD 35112
17-03-17 20:40:45.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:45.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:45.718 -07 000000459 INF: FPGA: Recv ZSGSRD 35117
17-03-17 20:40:45.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:45.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:45.728 -07 000000623 INF: FPGA: Recv ZSGSRD 35109
17-03-17 20:40:45.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:45.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:45.738 -07 000000433 INF: FPGA: Recv ZSGSRD 35114
17-03-17 20:40:45.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:45.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:45.748 -07 000000551 INF: FPGA: Recv ZSGSRD 35114
17-03-17 20:40:45.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:45.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:45.758 -07 000000476 INF: FPGA: Recv ZSGSRD 35112
17-03-17 20:40:45.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:45.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:45.768 -07 000000551 INF: FPGA: Recv ZSGSRD 35113
17-03-17 20:40:45.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:45.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:45.778 -07 000000433 INF: FPGA: Recv ZSGSRD 35113
17-03-17 20:40:45.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:45.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:45.788 -07 000000476 INF: FPGA: Recv ZSGSRD 35111
17-03-17 20:40:45.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:45.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:45.798 -07 000000415 INF: FPGA: Recv ZSGSRD 35111
17-03-17 20:40:45.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:45.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:45.808 -07 000000459 INF: FPGA: Recv ZPIEZORD 30980
17-03-17 20:40:45.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:45.818 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.529 V. Piezo Error = -9.1 V.
17-03-17 20:40:45.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35113 (-165.0 uncal um), Error = 0.9 uncal um, Median = 35112 (-165.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35109 (-165.0 uncal um), Max = 35117 (-165.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:40:45.818 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35113, posNoise = 4, negNoise = 4
17-03-17 20:40:45.818 -07 000000610 INF: Z Motor: After move to -0.165882, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:45.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:40:45.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:45.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:45.818 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:45.818 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:45.818 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:40:45.818 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:45.818 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:40:45.818 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:40:45.818 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:45.818 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:40:45.818 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:40:45.818 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:40:45.828 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:40:45.828 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:40:45.828 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:40:45.828 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:40:45.838 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:40:45.838 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:40:45.838 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:40:45.838 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:40:45.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 36413 150\n [Camera]
17-03-17 20:40:46.038 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:40:47.238 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:40:47.238 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:40:47.238 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36413 803
17-03-17 20:40:47.238 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:40:47.238 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:40:47.238 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:40:47.238 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:40:47.238 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:40:47.238 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:40:47.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:40:47.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 36413 150' command took 2 ms to send, 1384 ms to get response, and 1394 ms overall
17-03-17 20:40:47.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:40:47.238 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:47.238 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:40:47.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:40:47.238 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:47.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:40:47.238 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:47.238 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:47.248 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:47.248 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:40:47.248 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:47.248 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:40:47.618 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:40:47.618 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:40:47.618 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:47.628 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:40:47.628 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:40:47.628 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:47.628 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:47.628 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:40:47.628 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:40:47.748 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:40:47.748 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:47.748 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 20:40:47.748 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:47.748 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:40:48.128 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:40:48.128 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:40:48.128 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:48.128 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 20:40:48.128 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 490 ms.
17-03-17 20:40:48.128 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:48.128 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:40:48.128 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:40:48.138 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 892 ms.
17-03-17 20:40:48.138 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:40:48.138 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 897 ms.
17-03-17 20:40:48.178 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-17 20:40:48.178 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:40:48.218 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 20:40:48.218 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 20:40:48.218 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:40:48.228 -07 000000476 INF: FPGA: Recv EMCUR 
17-03-17 20:40:48.228 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 20:40:48.228 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 20:40:48.728 -07 000000476 INF: FPGA: Recv EMIN
17-03-17 20:40:48.728 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 496 ms to get response, and 502 ms overall
17-03-17 20:40:48.728 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 20:40:48.728 -07 000000476 INF: FPGA: Recv EMCUR 
17-03-17 20:40:48.738 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:40:48.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:40:48.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.165896712944787. ------
17-03-17 20:40:48.738 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14039 mm
17-03-17 20:40:48.738 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:40:48.738 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:48.738 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:40:48.738 -07 000000476 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 20:40:48.738 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30668, sync = True, waitForSettling = False)
17-03-17 20:40:48.738 -07 000000458 INF: Z Motor: Moving to -0.140389 mm, started at -0.165897 mm, distance = 25.51 um
17-03-17 20:40:48.748 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:48.748 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:40:48.748 -07 000000458 INF: FPGA: Xmit ZDACW 30668\n [Z Motor]
17-03-17 20:40:48.748 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:40:48.758 -07 000000458 INF: FPGA: 'ZDACW 30668' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:48.758 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:40:48.768 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:48.768 -07 000000551 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:40:48.778 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:48.778 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:40:48.778 -07 000000476 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:48.778 -07 000000433 INF: FPGA: Recv ZDACR 30668
17-03-17 20:40:48.778 -07 000000476 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 20:40:48.778 -07 000000476 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:40:48.788 -07 000000476 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:40:48.788 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:40:48.788 -07 000000458 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 20:40:48.958 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:40:48.958 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:40:49.118 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.001704,
17-03-17 20:40:50.418 -07 000000433 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 20:40:50.418 -07 000000476 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1620 ms to get response, and 1635 ms overall
17-03-17 20:40:50.418 -07 000000476 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:40:50.418 -07 000000476 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 20:40:50.418 -07 000000476 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1635 ms, distance = 14.919 mm, average velocity = 9.125 mm/sec
17-03-17 20:40:51.808 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:40:51.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:40:53.268 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:53.268 -07 000000458 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:40:53.278 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:53.278 -07 000000476 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:53.298 -07 000000476 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:40:53.308 -07 000000476 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 20:40:53.308 -07 000000476 INF: Y Motor: Moved to 59.9111 after 4560 ms
17-03-17 20:40:53.308 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140389 mm (DAC = 30668)
17-03-17 20:40:53.308 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:53.308 -07 000000448 INF: FPGA: Recv ZSGSRD 31148
17-03-17 20:40:53.318 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:40:53.318 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:53.318 -07 000000476 INF: FPGA: Recv ZSGSRD 31143
17-03-17 20:40:53.328 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:53.328 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:53.328 -07 000000382 INF: FPGA: Recv ZSGSRD 31137
17-03-17 20:40:53.338 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:53.338 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:53.338 -07 000000541 INF: FPGA: Recv ZSGSRD 31140
17-03-17 20:40:53.348 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:53.348 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:53.348 -07 000000433 INF: FPGA: Recv ZSGSRD 31146
17-03-17 20:40:53.358 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:53.358 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:53.358 -07 000000551 INF: FPGA: Recv ZSGSRD 31137
17-03-17 20:40:53.368 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:53.368 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:53.368 -07 000000448 INF: FPGA: Recv ZSGSRD 31149
17-03-17 20:40:53.378 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:53.378 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:53.378 -07 000000541 INF: FPGA: Recv ZSGSRD 31146
17-03-17 20:40:53.388 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:53.388 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:53.388 -07 000000448 INF: FPGA: Recv ZSGSRD 31140
17-03-17 20:40:53.398 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:53.398 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:53.398 -07 000000433 INF: FPGA: Recv ZSGSRD 31152
17-03-17 20:40:53.408 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:53.408 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:53.408 -07 000000382 INF: FPGA: Recv ZPIEZORD 26837
17-03-17 20:40:53.418 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:53.418 -07 000000459 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.680 V. Piezo Error = -9.5 V.
17-03-17 20:40:53.418 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.4 um, Read 10 ADC samples: Avg = 31144 (-139.6 uncal um), Error = 0.8 uncal um, Median = 31144 (-139.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 31137 (-139.6 uncal um), Max = 31152 (-139.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:40:53.418 -07 000000459 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31144, posNoise = 8, negNoise = 7
17-03-17 20:40:53.418 -07 000000459 INF: Z Motor: After move to -0.140389, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:53.418 -07 000000459 INF: Z Motor: Settle wait time = 4564 ms, measure time = 106 ms (allowed 150 ms), total time = 4670 ms
17-03-17 20:40:53.418 -07 000000459 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:40:53.468 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4723 ms
17-03-17 20:40:53.468 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:40:53.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:53.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:53.468 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:53.468 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:53.468 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:40:53.468 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:53.468 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:53.468 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:40:53.498 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 20:40:53.498 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:40:53.498 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:40:53.498 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:40:53.518 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:40:53.518 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 20:40:53.518 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:40:53.558 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:40:53.758 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:40:53.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:40:53.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:40:53.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 20:40:53.798 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:40:53.798 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 20:40:53.798 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 20:40:53.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:40:53.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:53.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:40:53.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:40:53.998 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:53.998 -07 000000541 INF: Image SNR check: start
17-03-17 20:40:53.998 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:54.008 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:40:54.008 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:40:54.008 -07 000000541 INF: Image SNR check: pass  [peak (Max-Min)=63.67]
17-03-17 20:40:54.008 -07 000000541 INF: Autofocus start
17-03-17 20:40:54.008 -07 000000541 INF: MeasureProfile start
17-03-17 20:40:54.018 -07 000000541 INF: MeasureProfile done
17-03-17 20:40:54.028 -07 000000541 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:40:54.028 -07 000000541 INF: Autofocus finished
17-03-17 20:40:54.208 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:40:54.208 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:40:54.218 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140399014954138. ----------
17-03-17 20:40:54.218 -07 000000610 INF: Cycle	41	Tile	1	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:40:54.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29163, sync = True, waitForSettling = True)
17-03-17 20:40:54.218 -07 000000610 INF: Z Motor: Moving to -0.133500 mm, started at -0.140399 mm, distance = 6.90 um
17-03-17 20:40:54.218 -07 000000610 INF: FPGA: Xmit ZDACW 29163\n [Z Motor]
17-03-17 20:40:54.228 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:40:54.228 -07 000000610 INF: FPGA: 'ZDACW 29163' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:40:54.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:54.228 -07 000000433 INF: FPGA: Recv ZDACR 29163
17-03-17 20:40:54.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:54.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:40:54.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:54.388 -07 000000476 INF: FPGA: Recv ZSGSRD 30071
17-03-17 20:40:54.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:54.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:54.398 -07 000000433 INF: FPGA: Recv ZSGSRD 30070
17-03-17 20:40:54.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:54.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:54.408 -07 000000541 INF: FPGA: Recv ZSGSRD 30069
17-03-17 20:40:54.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:54.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:54.418 -07 000000433 INF: FPGA: Recv ZSGSRD 30067
17-03-17 20:40:54.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:54.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:54.428 -07 000000382 INF: FPGA: Recv ZSGSRD 30069
17-03-17 20:40:54.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:54.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:54.438 -07 000000433 INF: FPGA: Recv ZSGSRD 30071
17-03-17 20:40:54.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:54.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:54.448 -07 000000448 INF: FPGA: Recv ZSGSRD 30070
17-03-17 20:40:54.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:54.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:54.458 -07 000000476 INF: FPGA: Recv ZSGSRD 30071
17-03-17 20:40:54.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:54.478 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.993549,
17-03-17 20:40:54.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:54.488 -07 000000458 INF: FPGA: Recv ZSGSRD 30067
17-03-17 20:40:54.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:40:54.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:54.508 -07 000000476 INF: FPGA: Recv ZSGSRD 30075
17-03-17 20:40:54.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:40:54.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:54.538 -07 000000476 INF: FPGA: Recv ZPIEZORD 25731
17-03-17 20:40:54.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:40:54.548 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.450 V. Piezo Error = -9.5 V.
17-03-17 20:40:54.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30070 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30070 (-132.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30067 (-132.7 uncal um), Max = 30075 (-132.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:40:54.548 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30070, posNoise = 5, negNoise = 3
17-03-17 20:40:54.548 -07 000000610 INF: Z Motor: After move to -0.133500, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:54.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 325 ms)
17-03-17 20:40:54.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:54.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:54.548 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:54.548 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:54.558 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:40:54.558 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:54.558 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:40:54.558 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:40:54.558 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:40:54.558 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:40:54.568 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:40:54.568 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:40:54.568 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:40:54.568 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:40:54.568 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:40:54.568 -07 000000476 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:40:54.588 -07 000000476 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 19 ms.
17-03-17 20:40:54.588 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:40:54.588 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:40:54.588 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:40:54.598 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:40:54.598 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 31 ms.
17-03-17 20:40:54.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 29340 150\n [Camera]
17-03-17 20:40:54.798 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:40:55.218 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:40:55.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:40:55.218 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:55.228 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:55.228 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) start.
17-03-17 20:40:55.608 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2164362856, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 20:40:55.608 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:40:55.608 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:55.608 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:40:55.608 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:40:55.628 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:40:55.628 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29340 803
17-03-17 20:40:55.628 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:40:55.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:40:55.628 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:55.638 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:55.638 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 20:40:55.768 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:40:55.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:40:55.768 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:40:55.768 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:40:55.768 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:40:55.768 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:40:55.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:40:55.768 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:40:55.958 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:40:55.958 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:40:55.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 29340 150' command took 2 ms to send, 1343 ms to get response, and 1353 ms overall
17-03-17 20:40:55.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:40:55.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133499411113887. ------
17-03-17 20:40:55.968 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.14001 mm
17-03-17 20:40:55.968 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:40:55.968 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:55.968 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:40:55.968 -07 000000576 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 20:40:55.968 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30586, sync = True, waitForSettling = False)
17-03-17 20:40:55.968 -07 000000501 INF: Z Motor: Moving to -0.140014 mm, started at -0.133499 mm, distance = -6.51 um
17-03-17 20:40:55.978 -07 000000501 INF: FPGA: Xmit ZDACW 30586\n [Z Motor]
17-03-17 20:40:55.988 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:56.008 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:40:56.008 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:40:56.008 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:56.018 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:56.018 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:40:56.018 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:40:56.018 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:40:56.028 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:56.028 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 20:40:56.028 -07 000000476 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:40:56.028 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 38 ms to get response, and 65 ms overall
17-03-17 20:40:56.028 -07 000000576 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:56.028 -07 000000576 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:40:56.028 -07 000000576 INF: Y Motor: Moving 1330 steps2
17-03-17 20:40:56.028 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:40:56.028 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 58 ms to get response, and 68 ms overall
17-03-17 20:40:56.028 -07 000000501 INF: FPGA: 'ZDACW 30586' command took 0 ms to send, 48 ms to get response, and 64 ms overall
17-03-17 20:40:56.038 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:56.038 -07 000000476 INF: FPGA: Recv ZDACR 30586
17-03-17 20:40:56.048 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:56.048 -07 000000501 INF: Z Motor: MoveAbsStepped took 76 ms (did NOT wait for settling yet))
17-03-17 20:40:56.048 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:40:56.158 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:40:56.158 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:40:56.158 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:56.158 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:40:56.158 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:40:56.248 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:40:56.248 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-17 20:40:56.408 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 20:40:56.408 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 377 ms to get response, and 378 ms overall
17-03-17 20:40:56.428 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 20:40:56.428 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:40:56.428 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:56.428 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:40:56.438 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 671 ms.
17-03-17 20:40:56.458 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:56.458 -07 000000431 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:40:56.468 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:40:56.468 -07 000000576 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:56.468 -07 000000576 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:40:56.468 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.831 mm, average velocity = 2.200 mm/sec
17-03-17 20:40:56.808 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:40:56.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:40:57.418 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:40:57.418 -07 000000501 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:40:57.428 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:57.428 -07 000000576 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:40:57.448 -07 000000576 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:40:57.448 -07 000000576 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:40:57.448 -07 000000576 INF: Y Motor: Moved to 60.7334 after 1480 ms (table move)
17-03-17 20:40:57.448 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140014 mm (DAC = 30586)
17-03-17 20:40:57.448 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:57.458 -07 000000623 INF: FPGA: Recv ZSGSRD 31090
17-03-17 20:40:57.458 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:40:57.458 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:57.458 -07 000000431 INF: FPGA: Recv ZSGSRD 31089
17-03-17 20:40:57.468 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:57.468 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:57.468 -07 000000429 INF: FPGA: Recv ZSGSRD 31086
17-03-17 20:40:57.478 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:57.478 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:57.478 -07 000000576 INF: FPGA: Recv ZSGSRD 31089
17-03-17 20:40:57.488 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:57.488 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:57.488 -07 000000429 INF: FPGA: Recv ZSGSRD 31083
17-03-17 20:40:57.498 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:57.498 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:57.498 -07 000000476 INF: FPGA: Recv ZSGSRD 31090
17-03-17 20:40:57.508 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:57.508 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:57.508 -07 000000501 INF: FPGA: Recv ZSGSRD 31084
17-03-17 20:40:57.518 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:57.518 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:57.518 -07 000000476 INF: FPGA: Recv ZSGSRD 31083
17-03-17 20:40:57.528 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:57.528 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:57.528 -07 000000623 INF: FPGA: Recv ZSGSRD 31090
17-03-17 20:40:57.538 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:57.538 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:57.538 -07 000000431 INF: FPGA: Recv ZSGSRD 31088
17-03-17 20:40:57.548 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:57.548 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:58.558 -07 000000476 INF: FPGA: Recv ZPIEZORD 27078
17-03-17 20:40:58.558 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 1000 ms to get response, and 1010 ms overall
17-03-17 20:40:58.558 -07 000000512 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.667 V. Piezo Error = -8.8 V.
17-03-17 20:40:58.558 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31087 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31088 (-139.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 31083 (-139.2 uncal um), Max = 31090 (-139.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:40:58.558 -07 000000512 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31087, posNoise = 3, negNoise = 4
17-03-17 20:40:58.558 -07 000000512 INF: Z Motor: After move to -0.140014, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:58.558 -07 000000512 INF: Z Motor: Settle wait time = 1483 ms, measure time = 1106 ms (allowed 150 ms), total time = 2589 ms
17-03-17 20:40:58.558 -07 000000512 INF: Z Motor: Warning: Actual position measuring time = 1106 ms, longer than max expected time of 150 ms
17-03-17 20:40:58.558 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2593 ms
17-03-17 20:40:58.558 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:40:58.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:58.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:58.558 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:58.558 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:58.558 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:40:58.558 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:58.568 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:58.568 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:40:58.568 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:40:58.568 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:40:58.578 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:40:58.578 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:40:58.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:40:58.628 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 20:40:58.828 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 20:40:58.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 20:40:58.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:40:58.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1443674384, 0x0, 559484976) start.
17-03-17 20:40:58.868 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:40:58.868 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 20:40:58.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 20:40:58.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1443674384, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:40:58.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:40:58.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:40:58.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:40:59.068 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:40:59.068 -07 000000576 INF: Autofocus start
17-03-17 20:40:59.068 -07 000000576 INF: MeasureProfile start
17-03-17 20:40:59.068 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:40:59.078 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:40:59.078 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:40:59.078 -07 000000576 INF: MeasureProfile done
17-03-17 20:40:59.078 -07 000000576 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:40:59.078 -07 000000576 INF: Autofocus finished
17-03-17 20:40:59.278 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:40:59.278 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:40:59.278 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.140032834862058. ----------
17-03-17 20:40:59.278 -07 000000610 INF: Cycle	41	Tile	2	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:40:59.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29110, sync = True, waitForSettling = True)
17-03-17 20:40:59.288 -07 000000610 INF: Z Motor: Moving to -0.133257 mm, started at -0.140033 mm, distance = 6.78 um
17-03-17 20:40:59.288 -07 000000610 INF: FPGA: Xmit ZDACW 29110\n [Z Motor]
17-03-17 20:40:59.288 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 20:40:59.298 -07 000000610 INF: FPGA: 'ZDACW 29110' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:59.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:40:59.298 -07 000000478 INF: FPGA: Recv ZDACR 29110
17-03-17 20:40:59.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:59.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:40:59.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:59.458 -07 000000476 INF: FPGA: Recv ZSGSRD 30035
17-03-17 20:40:59.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:40:59.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:59.468 -07 000000476 INF: FPGA: Recv ZSGSRD 30034
17-03-17 20:40:59.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:59.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:59.478 -07 000000512 INF: FPGA: Recv ZSGSRD 30035
17-03-17 20:40:59.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:59.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:59.488 -07 000000476 INF: FPGA: Recv ZSGSRD 30033
17-03-17 20:40:59.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:59.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:59.498 -07 000000512 INF: FPGA: Recv ZSGSRD 30029
17-03-17 20:40:59.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:59.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:59.508 -07 000000476 INF: FPGA: Recv ZSGSRD 30032
17-03-17 20:40:59.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:59.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:59.518 -07 000000429 INF: FPGA: Recv ZSGSRD 30035
17-03-17 20:40:59.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:59.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:59.528 -07 000000478 INF: FPGA: Recv ZSGSRD 30033
17-03-17 20:40:59.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:59.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:59.538 -07 000000478 INF: FPGA: Recv ZSGSRD 30029
17-03-17 20:40:59.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:59.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:40:59.548 -07 000000512 INF: FPGA: Recv ZSGSRD 30030
17-03-17 20:40:59.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:40:59.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:40:59.568 -07 000000478 INF: FPGA: Recv ZPIEZORD 25712
17-03-17 20:40:59.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:40:59.578 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.442 V. Piezo Error = -9.5 V.
17-03-17 20:40:59.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30032 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30033 (-132.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30029 (-132.4 uncal um), Max = 30035 (-132.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:40:59.578 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30032, posNoise = 3, negNoise = 3
17-03-17 20:40:59.578 -07 000000610 INF: Z Motor: After move to -0.133257, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:40:59.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-17 20:40:59.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:40:59.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:40:59.578 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:40:59.578 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:40:59.578 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:40:59.578 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:40:59.578 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:40:59.578 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:40:59.578 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:40:59.578 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:40:59.578 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:40:59.578 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:40:59.588 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 20:40:59.588 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:40:59.588 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-17 20:40:59.588 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:40:59.598 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:40:59.598 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:40:59.598 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:40:59.598 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:40:59.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 29287 150\n [Camera]
17-03-17 20:40:59.808 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:40:59.878 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.983999,
17-03-17 20:41:00.218 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:41:00.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:41:00.218 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:00.218 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:00.218 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:41:00.228 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:41:00.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:41:00.228 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:00.228 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:00.228 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:41:00.418 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29287 803
17-03-17 20:41:00.568 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:41:00.608 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:41:00.608 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:41:00.608 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:00.608 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:41:00.618 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:00.618 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:41:00.618 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:00.618 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:00.618 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:41:00.618 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:41:00.768 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:41:00.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:41:00.768 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:00.768 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:00.768 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:41:00.768 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:41:00.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:41:00.768 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:00.768 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:00.768 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:41:00.958 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:41:00.958 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:41:00.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 29287 150' command took 2 ms to send, 1344 ms to get response, and 1354 ms overall
17-03-17 20:41:00.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:41:00.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.1332552910525. ------
17-03-17 20:41:00.958 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:00.958 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13990 mm
17-03-17 20:41:00.958 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:41:00.968 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:00.968 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:41:00.968 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:41:00.968 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:41:00.968 -07 000000429 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 20:41:00.968 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 30560, sync = True, waitForSettling = False)
17-03-17 20:41:00.968 -07 000000541 INF: Z Motor: Moving to -0.139895 mm, started at -0.133255 mm, distance = -6.64 um
17-03-17 20:41:00.978 -07 000000541 INF: FPGA: Xmit ZDACW 30560\n [Z Motor]
17-03-17 20:41:00.978 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:41:00.988 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:00.988 -07 000000541 INF: FPGA: 'ZDACW 30560' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:41:00.988 -07 000000433 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:41:00.998 -07 000000429 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:41:00.998 -07 000000429 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:00.998 -07 000000429 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:41:00.998 -07 000000429 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:41:00.998 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:00.998 -07 000000448 INF: FPGA: Recv ZDACR 30560
17-03-17 20:41:01.008 -07 000000541 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:41:01.008 -07 000000541 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 20:41:01.008 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:41:01.168 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:41:01.168 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 20:41:01.168 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 20:41:01.168 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:41:01.168 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:01.168 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:41:01.168 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:41:01.168 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:01.178 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:01.178 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:41:01.178 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:01.188 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:41:01.378 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 20:41:01.378 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:41:01.418 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:01.418 -07 000000478 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:41:01.428 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:41:01.428 -07 000000429 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:01.428 -07 000000429 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:41:01.428 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.163 mm/sec
17-03-17 20:41:01.808 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:41:01.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:41:02.378 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:02.378 -07 000000431 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:41:02.388 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:02.388 -07 000000429 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:02.408 -07 000000429 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:41:02.408 -07 000000429 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:41:02.408 -07 000000429 INF: Y Motor: Moved to 61.5640 after 1441 ms (table move)
17-03-17 20:41:02.408 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139895 mm (DAC = 30560)
17-03-17 20:41:02.408 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:02.418 -07 000000478 INF: FPGA: Recv ZSGSRD 31073
17-03-17 20:41:02.418 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:41:02.418 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:02.418 -07 000000431 INF: FPGA: Recv ZSGSRD 31062
17-03-17 20:41:02.428 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:02.428 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:02.428 -07 000000431 INF: FPGA: Recv ZSGSRD 31071
17-03-17 20:41:02.438 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:02.438 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:02.438 -07 000000431 INF: FPGA: Recv ZSGSRD 31073
17-03-17 20:41:02.448 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:02.448 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:02.448 -07 000000478 INF: FPGA: Recv ZSGSRD 31066
17-03-17 20:41:02.458 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:02.458 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:02.458 -07 000000478 INF: FPGA: Recv ZSGSRD 31071
17-03-17 20:41:02.468 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:02.468 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:02.468 -07 000000478 INF: FPGA: Recv ZSGSRD 31066
17-03-17 20:41:02.478 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:02.478 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:02.478 -07 000000478 INF: FPGA: Recv ZSGSRD 31062
17-03-17 20:41:02.488 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:02.488 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:02.488 -07 000000478 INF: FPGA: Recv ZSGSRD 31067
17-03-17 20:41:02.498 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:02.498 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:02.498 -07 000000478 INF: FPGA: Recv ZSGSRD 31062
17-03-17 20:41:02.508 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:02.508 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:02.508 -07 000000478 INF: FPGA: Recv ZPIEZORD 27107
17-03-17 20:41:02.518 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:02.518 -07 000000415 INF: Z Motor: Piezo is near 37.9 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.663 V. Piezo Error = -8.7 V.
17-03-17 20:41:02.518 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31067 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31066 (-139.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31062 (-139.1 uncal um), Max = 31073 (-139.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:41:02.518 -07 000000415 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31067, posNoise = 6, negNoise = 5
17-03-17 20:41:02.518 -07 000000415 INF: Z Motor: After move to -0.139895, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:02.518 -07 000000415 INF: Z Motor: Settle wait time = 1444 ms, measure time = 103 ms (allowed 150 ms), total time = 1547 ms
17-03-17 20:41:02.518 -07 000000415 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:41:02.568 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 20:41:02.568 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:41:02.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:02.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:02.568 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:02.568 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:02.568 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:41:02.568 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:02.578 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:41:02.578 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:41:02.578 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:41:02.578 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:41:02.578 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:41:02.578 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:41:02.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:41:02.628 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 20:41:02.828 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 20:41:02.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 20:41:02.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:41:02.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617610680, 0x0, 559484976) start.
17-03-17 20:41:02.868 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:41:02.868 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 20:41:02.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:41:02.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617610680, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 20:41:02.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:02.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:02.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:41:03.068 -07 000000415 INF: Autofocus start
17-03-17 20:41:03.068 -07 000000415 INF: MeasureProfile start
17-03-17 20:41:03.068 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:03.078 -07 000000415 INF: MeasureProfile done
17-03-17 20:41:03.078 -07 000000415 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 20:41:03.078 -07 000000415 INF: Autofocus finished
17-03-17 20:41:03.078 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:03.078 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 8 ms to get response, and 14 ms overall
17-03-17 20:41:03.088 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:41:03.288 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:41:03.288 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:41:03.288 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139904350619223. ----------
17-03-17 20:41:03.298 -07 000000610 INF: Cycle	41	Tile	3	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:41:03.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29038, sync = True, waitForSettling = True)
17-03-17 20:41:03.298 -07 000000610 INF: Z Motor: Moving to -0.132927 mm, started at -0.139904 mm, distance = 6.98 um
17-03-17 20:41:03.298 -07 000000610 INF: FPGA: Xmit ZDACW 29038\n [Z Motor]
17-03-17 20:41:03.298 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:41:03.308 -07 000000610 INF: FPGA: 'ZDACW 29038' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:41:03.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:03.308 -07 000000415 INF: FPGA: Recv ZDACR 29038
17-03-17 20:41:03.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:03.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:41:03.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:03.468 -07 000000478 INF: FPGA: Recv ZSGSRD 29983
17-03-17 20:41:03.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:03.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:03.478 -07 000000415 INF: FPGA: Recv ZSGSRD 29980
17-03-17 20:41:03.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:03.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:03.488 -07 000000415 INF: FPGA: Recv ZSGSRD 29983
17-03-17 20:41:03.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:03.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:03.498 -07 000000415 INF: FPGA: Recv ZSGSRD 29976
17-03-17 20:41:03.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:03.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:03.508 -07 000000415 INF: FPGA: Recv ZSGSRD 29981
17-03-17 20:41:03.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:03.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:03.518 -07 000000415 INF: FPGA: Recv ZSGSRD 29993
17-03-17 20:41:03.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:03.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:03.528 -07 000000415 INF: FPGA: Recv ZSGSRD 29985
17-03-17 20:41:03.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:03.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:03.538 -07 000000415 INF: FPGA: Recv ZSGSRD 29985
17-03-17 20:41:03.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:03.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:03.548 -07 000000415 INF: FPGA: Recv ZSGSRD 29982
17-03-17 20:41:03.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:03.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:03.558 -07 000000415 INF: FPGA: Recv ZSGSRD 29983
17-03-17 20:41:03.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:03.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:03.568 -07 000000415 INF: FPGA: Recv ZPIEZORD 25661
17-03-17 20:41:03.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:03.578 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.431 V. Piezo Error = -9.5 V.
17-03-17 20:41:03.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29983 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29983 (-132.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29976 (-132.1 uncal um), Max = 29993 (-132.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:41:03.578 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29983, posNoise = 10, negNoise = 7
17-03-17 20:41:03.578 -07 000000610 INF: Z Motor: After move to -0.132927, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:03.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:41:03.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:03.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:03.578 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:03.578 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:03.578 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:41:03.578 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:03.588 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:41:03.588 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:41:03.588 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:41:03.588 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:41:03.598 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:41:03.598 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:41:03.598 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:41:03.598 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:41:03.598 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:41:03.598 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:41:03.598 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:41:03.598 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:41:03.608 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:41:03.608 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 11 ms.
17-03-17 20:41:03.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 29215 150\n [Camera]
17-03-17 20:41:03.808 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:41:04.238 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:41:04.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:41:04.238 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:04.238 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:04.238 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 20:41:04.238 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:41:04.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:41:04.238 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:04.238 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:04.238 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 20:41:04.418 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29215 803
17-03-17 20:41:04.568 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:41:04.628 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:41:04.628 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:41:04.628 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:04.638 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:04.638 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:41:04.638 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:41:04.638 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:41:04.638 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:04.638 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:04.648 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:41:04.778 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:41:04.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:41:04.778 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:04.778 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:04.778 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 20:41:04.778 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:41:04.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:41:04.778 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:04.778 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:04.778 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 20:41:04.968 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:41:04.968 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:41:04.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 29215 150' command took 2 ms to send, 1342 ms to get response, and 1353 ms overall
17-03-17 20:41:04.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:41:04.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132940504657554. ------
17-03-17 20:41:05.088 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13903 mm
17-03-17 20:41:05.088 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:41:05.088 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:05.088 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:41:05.088 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30372, sync = True, waitForSettling = False)
17-03-17 20:41:05.088 -07 000000415 INF: Z Motor: Moving to -0.139034 mm, started at -0.132941 mm, distance = -6.09 um
17-03-17 20:41:05.088 -07 000000382 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 20:41:05.088 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:05.098 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:41:05.098 -07 000000415 INF: FPGA: Xmit ZDACW 30372\n [Z Motor]
17-03-17 20:41:05.098 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:41:05.108 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:05.108 -07 000000415 INF: FPGA: 'ZDACW 30372' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:41:05.108 -07 000000541 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:41:05.118 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:41:05.118 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:41:05.118 -07 000000382 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:05.118 -07 000000382 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:41:05.118 -07 000000382 INF: Y Motor: Moving 1342 steps-18
17-03-17 20:41:05.128 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:05.128 -07 000000541 INF: FPGA: Recv ZDACR 30372
17-03-17 20:41:05.138 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:41:05.138 -07 000000415 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 20:41:05.138 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:41:05.178 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:41:05.178 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:41:05.178 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:05.178 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:41:05.178 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:41:05.178 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:05.178 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:05.178 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:41:05.178 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:41:05.188 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:41:05.248 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.990831,
17-03-17 20:41:05.318 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:41:05.318 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:41:05.508 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 20:41:05.508 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:41:05.568 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:06.238 -07 000000541 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:41:06.238 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 660 ms to get response, and 685 ms overall
17-03-17 20:41:06.238 -07 000000382 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:06.238 -07 000000382 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:41:06.238 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.107 mm/sec
17-03-17 20:41:06.808 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:41:06.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:41:07.188 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:07.188 -07 000000541 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:41:07.198 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:07.198 -07 000000382 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:07.218 -07 000000382 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:41:07.218 -07 000000382 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:41:07.218 -07 000000382 INF: Y Motor: Moved to 62.3955 after 2128 ms (table move)
17-03-17 20:41:07.218 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139034 mm (DAC = 30372)
17-03-17 20:41:07.218 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:07.218 -07 000000476 INF: FPGA: Recv ZSGSRD 30937
17-03-17 20:41:07.228 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:41:07.228 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:07.228 -07 000000476 INF: FPGA: Recv ZSGSRD 30933
17-03-17 20:41:07.238 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:07.238 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:07.238 -07 000000476 INF: FPGA: Recv ZSGSRD 30936
17-03-17 20:41:07.248 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:07.248 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:07.248 -07 000000541 INF: FPGA: Recv ZSGSRD 30930
17-03-17 20:41:07.258 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:07.258 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:07.258 -07 000000476 INF: FPGA: Recv ZSGSRD 30933
17-03-17 20:41:07.268 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:07.268 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:07.268 -07 000000541 INF: FPGA: Recv ZSGSRD 30934
17-03-17 20:41:07.278 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:07.278 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:07.278 -07 000000415 INF: FPGA: Recv ZSGSRD 30934
17-03-17 20:41:07.288 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:07.288 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:07.288 -07 000000382 INF: FPGA: Recv ZSGSRD 30933
17-03-17 20:41:07.298 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:07.298 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:07.298 -07 000000382 INF: FPGA: Recv ZSGSRD 30925
17-03-17 20:41:07.308 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:07.308 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:07.308 -07 000000382 INF: FPGA: Recv ZSGSRD 30938
17-03-17 20:41:07.318 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:07.318 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:07.318 -07 000000448 INF: FPGA: Recv ZPIEZORD 26924
17-03-17 20:41:07.328 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:07.328 -07 000000576 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.634 V. Piezo Error = -8.8 V.
17-03-17 20:41:07.328 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30933 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30934 (-138.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30925 (-138.2 uncal um), Max = 30938 (-138.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:41:07.328 -07 000000576 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30933, posNoise = 5, negNoise = 8
17-03-17 20:41:07.328 -07 000000576 INF: Z Motor: After move to -0.139034, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:07.328 -07 000000576 INF: Z Motor: Settle wait time = 2132 ms, measure time = 104 ms (allowed 150 ms), total time = 2236 ms
17-03-17 20:41:07.328 -07 000000576 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:41:07.378 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2288 ms
17-03-17 20:41:07.378 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:41:07.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:07.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:07.378 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:07.378 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:07.378 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:41:07.378 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:07.378 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:41:07.378 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:41:07.388 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:41:07.388 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:41:07.388 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:41:07.388 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:41:07.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:41:07.438 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:41:07.638 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:41:07.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:41:07.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:41:07.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:41:07.678 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:41:07.678 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:41:07.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 20:41:07.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:41:07.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:07.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:41:07.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:41:07.778 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:07.778 -07 000000476 INF: Autofocus start
17-03-17 20:41:07.778 -07 000000476 INF: MeasureProfile start
17-03-17 20:41:07.778 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:07.788 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:41:07.788 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:41:07.798 -07 000000476 INF: MeasureProfile done
17-03-17 20:41:07.798 -07 000000476 INF: X=32  Z correction [um]=0.1299841
17-03-17 20:41:07.798 -07 000000476 INF: Autofocus finished
17-03-17 20:41:07.988 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:41:07.988 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:41:07.988 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139043506192227. ----------
17-03-17 20:41:07.998 -07 000000610 INF: Cycle	41	Tile	4	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:41:07.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28913, sync = True, waitForSettling = True)
17-03-17 20:41:07.998 -07 000000610 INF: Z Motor: Moving to -0.132355 mm, started at -0.139044 mm, distance = 6.69 um
17-03-17 20:41:07.998 -07 000000610 INF: FPGA: Xmit ZDACW 28913\n [Z Motor]
17-03-17 20:41:07.998 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:41:08.008 -07 000000610 INF: FPGA: 'ZDACW 28913' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:41:08.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:08.008 -07 000000476 INF: FPGA: Recv ZDACR 28913
17-03-17 20:41:08.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:08.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:41:08.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:08.168 -07 000000382 INF: FPGA: Recv ZSGSRD 29893
17-03-17 20:41:08.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:08.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:08.178 -07 000000448 INF: FPGA: Recv ZSGSRD 29889
17-03-17 20:41:08.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:08.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:08.188 -07 000000382 INF: FPGA: Recv ZSGSRD 29895
17-03-17 20:41:08.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:08.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:08.198 -07 000000541 INF: FPGA: Recv ZSGSRD 29890
17-03-17 20:41:08.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:08.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:08.208 -07 000000448 INF: FPGA: Recv ZSGSRD 29896
17-03-17 20:41:08.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:08.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:08.218 -07 000000476 INF: FPGA: Recv ZSGSRD 29892
17-03-17 20:41:08.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:08.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:08.228 -07 000000541 INF: FPGA: Recv ZSGSRD 29895
17-03-17 20:41:08.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:08.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:08.238 -07 000000476 INF: FPGA: Recv ZSGSRD 29894
17-03-17 20:41:08.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:08.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:08.248 -07 000000448 INF: FPGA: Recv ZSGSRD 29893
17-03-17 20:41:08.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:08.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:08.258 -07 000000476 INF: FPGA: Recv ZSGSRD 29888
17-03-17 20:41:08.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:08.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:08.268 -07 000000448 INF: FPGA: Recv ZPIEZORD 25543
17-03-17 20:41:08.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:08.278 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.412 V. Piezo Error = -9.6 V.
17-03-17 20:41:08.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29892 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29893 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29888 (-131.5 uncal um), Max = 29896 (-131.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:41:08.278 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29892, posNoise = 4, negNoise = 4
17-03-17 20:41:08.278 -07 000000610 INF: Z Motor: After move to -0.132355, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:08.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:41:08.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:08.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:08.278 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:08.278 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:08.278 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:41:08.278 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:08.278 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:41:08.278 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:41:08.278 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:41:08.278 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:41:08.278 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:41:08.278 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:41:08.288 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:41:08.288 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:41:08.288 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:41:08.288 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:41:08.298 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 20:41:08.298 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:41:08.298 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 20:41:08.298 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:41:08.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 29090 150\n [Camera]
17-03-17 20:41:08.498 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:41:08.918 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:41:08.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:41:08.918 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:08.928 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:41:08.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:41:08.928 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:08.928 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:08.928 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:41:08.928 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:08.928 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1458481592, 0x0, 418435064) start.
17-03-17 20:41:09.118 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29090 803
17-03-17 20:41:09.258 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:41:09.318 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:41:09.318 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1458481592, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 20:41:09.318 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:41:09.318 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:09.318 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:41:09.318 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:09.328 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:09.328 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:09.328 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:41:09.328 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:41:09.468 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:41:09.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:41:09.468 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:09.468 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:41:09.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:41:09.468 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:09.588 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:09.588 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:41:09.588 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:09.588 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:41:09.658 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:41:09.658 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:41:09.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 29090 150' command took 2 ms to send, 1342 ms to get response, and 1353 ms overall
17-03-17 20:41:09.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:41:09.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132355901352654. ------
17-03-17 20:41:09.658 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:09.658 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13899 mm
17-03-17 20:41:09.658 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:41:09.668 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 30363, sync = True, waitForSettling = False)
17-03-17 20:41:09.668 -07 000000541 INF: Z Motor: Moving to -0.138993 mm, started at -0.132356 mm, distance = -6.64 um
17-03-17 20:41:09.668 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:41:09.668 -07 000000448 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 20:41:09.668 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:09.668 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 20:41:09.668 -07 000000541 INF: FPGA: Xmit ZDACW 30363\n [Z Motor]
17-03-17 20:41:09.668 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:41:09.678 -07 000000541 INF: FPGA: 'ZDACW 30363' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:41:09.678 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:09.678 -07 000000476 INF: FPGA: Recv ZDACR 30363
17-03-17 20:41:09.688 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:09.688 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:09.688 -07 000000541 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-17 20:41:09.688 -07 000000458 INF: FPGA: Recv YRDPOS 127787
17-03-17 20:41:09.698 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:41:09.698 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:41:09.698 -07 000000448 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:09.698 -07 000000448 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:41:09.698 -07 000000448 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:41:09.708 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:41:09.898 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:41:09.898 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 230 ms overall
17-03-17 20:41:09.988 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:41:09.988 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:41:09.988 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:09.988 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:41:09.988 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:41:09.988 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:09.988 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:41:09.988 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:41:09.988 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms.
17-03-17 20:41:09.998 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 530 ms.
17-03-17 20:41:10.078 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 20:41:10.078 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 20:41:10.118 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:10.118 -07 000000476 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:41:10.128 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:41:10.128 -07 000000448 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:10.128 -07 000000448 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:41:10.128 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.837 mm, average velocity = 2.180 mm/sec
17-03-17 20:41:10.608 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.007176,
17-03-17 20:41:11.078 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:11.078 -07 000000458 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:41:11.088 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:11.088 -07 000000448 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:11.108 -07 000000448 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:41:11.108 -07 000000448 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:41:11.108 -07 000000448 INF: Y Motor: Moved to 63.2241 after 1443 ms (table move)
17-03-17 20:41:11.108 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138993 mm (DAC = 30363)
17-03-17 20:41:11.108 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:11.118 -07 000000476 INF: FPGA: Recv ZSGSRD 30934
17-03-17 20:41:11.118 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:41:11.118 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:11.118 -07 000000459 INF: FPGA: Recv ZSGSRD 30933
17-03-17 20:41:11.128 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:41:11.128 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:11.128 -07 000000551 INF: FPGA: Recv ZSGSRD 30929
17-03-17 20:41:11.138 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:11.138 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:11.138 -07 000000476 INF: FPGA: Recv ZSGSRD 30927
17-03-17 20:41:11.148 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:11.148 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:11.148 -07 000000476 INF: FPGA: Recv ZSGSRD 30937
17-03-17 20:41:11.158 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:11.158 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:11.158 -07 000000476 INF: FPGA: Recv ZSGSRD 30932
17-03-17 20:41:11.168 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:11.168 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:11.168 -07 000000476 INF: FPGA: Recv ZSGSRD 30924
17-03-17 20:41:11.178 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:11.178 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:11.178 -07 000000476 INF: FPGA: Recv ZSGSRD 30925
17-03-17 20:41:11.188 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:11.188 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:11.188 -07 000000476 INF: FPGA: Recv ZSGSRD 30923
17-03-17 20:41:11.198 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:11.198 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:11.198 -07 000000476 INF: FPGA: Recv ZSGSRD 30925
17-03-17 20:41:11.208 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:11.208 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:11.208 -07 000000476 INF: FPGA: Recv ZPIEZORD 26935
17-03-17 20:41:11.218 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:11.218 -07 000000382 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.633 V. Piezo Error = -8.8 V.
17-03-17 20:41:11.218 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30929 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30928 (-138.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30923 (-138.2 uncal um), Max = 30937 (-138.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:41:11.218 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30929, posNoise = 8, negNoise = 6
17-03-17 20:41:11.218 -07 000000382 INF: Z Motor: After move to -0.138993, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:11.218 -07 000000382 INF: Z Motor: Settle wait time = 1447 ms, measure time = 102 ms (allowed 150 ms), total time = 1549 ms
17-03-17 20:41:11.218 -07 000000382 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:41:11.268 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 20:41:11.268 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:41:11.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:11.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:11.268 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:11.268 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:11.278 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:41:11.278 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:11.278 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:41:11.278 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:41:11.278 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:41:11.278 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:41:11.288 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:41:11.288 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:41:11.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:41:11.338 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:41:11.538 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:41:11.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:41:11.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:41:11.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406176928, 0x0, 559484976) start.
17-03-17 20:41:11.578 -07 000000476 INF: FPGA: Recv @CAMSNAP 281
17-03-17 20:41:11.578 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 20:41:11.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 286 ms to get response, and 292 ms overall
17-03-17 20:41:11.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1406176928, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 20:41:11.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:11.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:41:11.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 20:41:11.678 -07 000000382 INF: Autofocus start
17-03-17 20:41:11.678 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:11.678 -07 000000382 INF: MeasureProfile start
17-03-17 20:41:11.688 -07 000000382 INF: MeasureProfile done
17-03-17 20:41:11.688 -07 000000382 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:41:11.688 -07 000000382 INF: Autofocus finished
17-03-17 20:41:11.698 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:11.698 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 10 ms to get response, and 16 ms overall
17-03-17 20:41:11.698 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:41:11.808 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:41:11.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:41:11.898 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:41:11.898 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:41:11.898 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.13901780934366. ----------
17-03-17 20:41:11.898 -07 000000610 INF: Cycle	41	Tile	5	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:41:11.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28887, sync = True, waitForSettling = True)
17-03-17 20:41:11.908 -07 000000610 INF: Z Motor: Moving to -0.132236 mm, started at -0.139018 mm, distance = 6.78 um
17-03-17 20:41:11.908 -07 000000610 INF: FPGA: Xmit ZDACW 28887\n [Z Motor]
17-03-17 20:41:11.908 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:41:11.918 -07 000000610 INF: FPGA: 'ZDACW 28887' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:41:11.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:11.918 -07 000000415 INF: FPGA: Recv ZDACR 28887
17-03-17 20:41:11.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:11.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:41:12.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:12.078 -07 000000576 INF: FPGA: Recv ZSGSRD 29880
17-03-17 20:41:12.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:12.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:12.088 -07 000000429 INF: FPGA: Recv ZSGSRD 29874
17-03-17 20:41:12.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:12.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:12.098 -07 000000448 INF: FPGA: Recv ZSGSRD 29875
17-03-17 20:41:12.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:12.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:12.108 -07 000000382 INF: FPGA: Recv ZSGSRD 29871
17-03-17 20:41:12.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:12.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:12.118 -07 000000512 INF: FPGA: Recv ZSGSRD 29871
17-03-17 20:41:12.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:12.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:12.128 -07 000000429 INF: FPGA: Recv ZSGSRD 29878
17-03-17 20:41:12.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:12.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:12.138 -07 000000623 INF: FPGA: Recv ZSGSRD 29877
17-03-17 20:41:12.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:12.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:12.148 -07 000000512 INF: FPGA: Recv ZSGSRD 29875
17-03-17 20:41:12.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:12.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:12.158 -07 000000623 INF: FPGA: Recv ZSGSRD 29879
17-03-17 20:41:12.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:12.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:12.168 -07 000000433 INF: FPGA: Recv ZSGSRD 29874
17-03-17 20:41:12.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:12.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:12.178 -07 000000448 INF: FPGA: Recv ZPIEZORD 25532
17-03-17 20:41:12.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:12.188 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -9.5 V.
17-03-17 20:41:12.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29875 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29875 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29871 (-131.4 uncal um), Max = 29880 (-131.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:41:12.188 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29875, posNoise = 5, negNoise = 4
17-03-17 20:41:12.188 -07 000000610 INF: Z Motor: After move to -0.132236, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:12.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:41:12.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:12.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:12.188 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:12.188 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:12.188 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:41:12.188 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:12.188 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:41:12.188 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:41:12.188 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:41:12.188 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:41:12.188 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:41:12.188 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:41:12.198 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:41:12.198 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:41:12.198 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:41:12.198 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:41:12.198 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:41:12.198 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:41:12.198 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:41:12.198 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:41:12.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 29064 150\n [Camera]
17-03-17 20:41:12.408 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:41:12.828 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:41:12.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:41:12.828 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:12.828 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:41:12.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:41:12.828 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:12.828 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:12.828 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1425258312, 0x0, 391868352) start.
17-03-17 20:41:12.828 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:12.828 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1460680576, 0x0, 418435064) start.
17-03-17 20:41:13.018 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29064 803
17-03-17 20:41:13.168 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:41:13.218 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1460680576, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:41:13.218 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:41:13.218 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:13.218 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1425258312, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:41:13.218 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:41:13.218 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:13.218 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:13.218 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:13.228 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:41:13.228 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:41:13.368 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:41:13.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:41:13.368 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:13.368 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:41:13.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:41:13.368 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:13.368 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:13.368 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:41:13.378 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:13.378 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) start.
17-03-17 20:41:13.558 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:41:13.558 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:41:13.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 29064 150' command took 2 ms to send, 1347 ms to get response, and 1354 ms overall
17-03-17 20:41:13.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:41:13.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.132246689746244. ------
17-03-17 20:41:13.568 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:13.568 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13872 mm
17-03-17 20:41:13.568 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:41:13.568 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:41:13.568 -07 000000433 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 20:41:13.568 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30303, sync = True, waitForSettling = False)
17-03-17 20:41:13.568 -07 000000382 INF: Z Motor: Moving to -0.138718 mm, started at -0.132247 mm, distance = -6.47 um
17-03-17 20:41:13.568 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:13.578 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:41:13.578 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:13.578 -07 000000576 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:41:13.588 -07 000000382 INF: FPGA: Xmit ZDACW 30303\n [Z Motor]
17-03-17 20:41:13.588 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:41:13.588 -07 000000433 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:13.588 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:41:13.588 -07 000000433 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:41:13.588 -07 000000433 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:41:13.598 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:41:13.598 -07 000000382 INF: FPGA: 'ZDACW 30303' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:41:13.608 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:41:13.618 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:13.618 -07 000000448 INF: FPGA: Recv ZDACR 30303
17-03-17 20:41:13.628 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:41:13.628 -07 000000382 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 20:41:13.768 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:41:13.768 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:41:13.768 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:13.778 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 656674232, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:41:13.778 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:41:13.778 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:13.778 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:13.778 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:41:13.778 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:41:13.788 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:41:14.738 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:41:14.738 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 20:41:14.738 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1120 ms to get response, and 1147 ms overall
17-03-17 20:41:14.738 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1130 ms to get response, and 1160 ms overall
17-03-17 20:41:14.768 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:14.778 -07 000000415 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:41:14.778 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:41:14.778 -07 000000433 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:14.778 -07 000000433 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 20:41:14.778 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1147 ms, distance = 0.838 mm, average velocity = 0.731 mm/sec
17-03-17 20:41:15.728 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:15.728 -07 000000382 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:41:15.738 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:15.738 -07 000000433 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:15.758 -07 000000433 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:41:15.758 -07 000000433 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:41:15.758 -07 000000433 INF: Y Motor: Moved to 64.0571 after 2183 ms (table move)
17-03-17 20:41:15.758 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138718 mm (DAC = 30303)
17-03-17 20:41:15.758 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:15.758 -07 000000448 INF: FPGA: Recv ZSGSRD 30888
17-03-17 20:41:15.768 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:41:15.768 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:15.768 -07 000000512 INF: FPGA: Recv ZSGSRD 30890
17-03-17 20:41:15.778 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:15.778 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:15.778 -07 000000433 INF: FPGA: Recv ZSGSRD 30872
17-03-17 20:41:15.788 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:15.788 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:15.788 -07 000000415 INF: FPGA: Recv ZSGSRD 30889
17-03-17 20:41:15.798 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:15.798 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:15.798 -07 000000478 INF: FPGA: Recv ZSGSRD 30879
17-03-17 20:41:15.808 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:15.808 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:15.808 -07 000000415 INF: FPGA: Recv ZSGSRD 30884
17-03-17 20:41:15.818 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:15.818 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:15.818 -07 000000576 INF: FPGA: Recv ZSGSRD 30892
17-03-17 20:41:15.828 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:15.828 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:15.828 -07 000000512 INF: FPGA: Recv ZSGSRD 30882
17-03-17 20:41:15.838 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:15.838 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:15.838 -07 000000512 INF: FPGA: Recv ZSGSRD 30886
17-03-17 20:41:15.848 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:15.848 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:15.848 -07 000000433 INF: FPGA: Recv ZSGSRD 30881
17-03-17 20:41:15.858 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:15.858 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:15.858 -07 000000512 INF: FPGA: Recv ZPIEZORD 26883
17-03-17 20:41:15.868 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:15.868 -07 000000476 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.624 V. Piezo Error = -8.8 V.
17-03-17 20:41:15.868 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30884 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30885 (-137.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30872 (-137.9 uncal um), Max = 30892 (-138.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 20:41:15.868 -07 000000476 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30884, posNoise = 8, negNoise = 12
17-03-17 20:41:15.868 -07 000000476 INF: Z Motor: After move to -0.138718, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:15.868 -07 000000476 INF: Z Motor: Settle wait time = 2186 ms, measure time = 106 ms (allowed 150 ms), total time = 2292 ms
17-03-17 20:41:15.868 -07 000000476 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:41:15.918 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2345 ms
17-03-17 20:41:15.918 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:41:15.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:15.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:15.918 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:15.918 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:41:15.918 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:15.918 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:15.918 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:41:15.918 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:41:15.928 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:41:15.928 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:41:15.928 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:41:15.928 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:41:15.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:41:15.968 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.996267,
17-03-17 20:41:15.978 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:41:16.178 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:41:16.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:41:16.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:41:16.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:41:16.218 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:41:16.218 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:41:16.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 20:41:16.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 20:41:16.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:16.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:41:16.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 20:41:16.318 -07 000000512 INF: Autofocus start
17-03-17 20:41:16.318 -07 000000512 INF: MeasureProfile start
17-03-17 20:41:16.318 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:16.318 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:16.328 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:41:16.328 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:41:16.328 -07 000000512 INF: MeasureProfile done
17-03-17 20:41:16.328 -07 000000512 INF: X=28  Z correction [um]=0.1107426
17-03-17 20:41:16.328 -07 000000512 INF: Autofocus finished
17-03-17 20:41:16.528 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:41:16.528 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:41:16.528 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.13872871979728. ----------
17-03-17 20:41:16.538 -07 000000610 INF: Cycle	41	Tile	6	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:41:16.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28840, sync = True, waitForSettling = True)
17-03-17 20:41:16.538 -07 000000610 INF: Z Motor: Moving to -0.132021 mm, started at -0.138729 mm, distance = 6.71 um
17-03-17 20:41:16.538 -07 000000610 INF: FPGA: Xmit ZDACW 28840\n [Z Motor]
17-03-17 20:41:16.538 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 20:41:16.548 -07 000000610 INF: FPGA: 'ZDACW 28840' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:41:16.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:16.548 -07 000000433 INF: FPGA: Recv ZDACR 28840
17-03-17 20:41:16.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:16.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:41:16.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:16.708 -07 000000512 INF: FPGA: Recv ZSGSRD 29837
17-03-17 20:41:16.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:16.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:16.718 -07 000000433 INF: FPGA: Recv ZSGSRD 29848
17-03-17 20:41:16.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:16.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:16.728 -07 000000448 INF: FPGA: Recv ZSGSRD 29846
17-03-17 20:41:16.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:16.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:16.738 -07 000000512 INF: FPGA: Recv ZSGSRD 29839
17-03-17 20:41:16.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:16.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:16.748 -07 000000478 INF: FPGA: Recv ZSGSRD 29835
17-03-17 20:41:16.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:16.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:16.758 -07 000000382 INF: FPGA: Recv ZSGSRD 29842
17-03-17 20:41:16.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:16.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:16.768 -07 000000433 INF: FPGA: Recv ZSGSRD 29839
17-03-17 20:41:16.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:16.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:16.778 -07 000000382 INF: FPGA: Recv ZSGSRD 29848
17-03-17 20:41:16.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:16.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:16.788 -07 000000433 INF: FPGA: Recv ZSGSRD 29838
17-03-17 20:41:16.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:16.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:16.798 -07 000000448 INF: FPGA: Recv ZSGSRD 29838
17-03-17 20:41:16.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:16.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:16.808 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:41:16.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:41:16.808 -07 000000382 INF: FPGA: Recv ZPIEZORD 25545
17-03-17 20:41:16.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:16.818 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -9.4 V.
17-03-17 20:41:16.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29841 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29839 (-131.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29835 (-131.2 uncal um), Max = 29848 (-131.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:41:16.818 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29841, posNoise = 7, negNoise = 6
17-03-17 20:41:16.818 -07 000000610 INF: Z Motor: After move to -0.132021, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:16.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 20:41:16.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:16.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:16.818 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:16.818 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:16.818 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:41:16.818 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:16.818 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:41:16.818 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:41:16.818 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:41:16.818 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:41:16.818 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:41:16.818 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:41:16.828 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:41:16.828 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:41:16.828 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:41:16.828 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:41:16.838 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:41:16.838 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:41:16.838 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:41:16.838 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:41:16.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 29017 150\n [Camera]
17-03-17 20:41:17.038 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:41:17.458 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:41:17.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:41:17.458 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:17.458 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:17.458 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:41:17.468 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:41:17.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:41:17.468 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:17.468 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:17.468 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:41:17.658 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29017 803
17-03-17 20:41:17.798 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:41:17.858 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:41:17.858 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:41:17.858 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:17.868 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:17.868 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:41:17.868 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:41:17.868 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:41:17.868 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:17.868 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:17.878 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:41:18.008 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:41:18.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:41:18.008 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:18.108 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:41:18.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:41:18.108 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:18.108 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:18.118 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:41:18.118 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:18.118 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start.
17-03-17 20:41:18.198 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1349
17-03-17 20:41:18.198 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:41:18.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 29017 150' command took 2 ms to send, 1345 ms to get response, and 1356 ms overall
17-03-17 20:41:18.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:41:18.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.132028266533424. ------
17-03-17 20:41:18.208 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:18.208 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13864 mm
17-03-17 20:41:18.208 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:41:18.208 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:18.208 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:41:18.208 -07 000000431 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 20:41:18.208 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 30286, sync = True, waitForSettling = False)
17-03-17 20:41:18.208 -07 000000433 INF: Z Motor: Moving to -0.138640 mm, started at -0.132028 mm, distance = -6.61 um
17-03-17 20:41:18.218 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:18.218 -07 000000433 INF: FPGA: Xmit ZDACW 30286\n [Z Motor]
17-03-17 20:41:18.218 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:41:18.228 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:18.228 -07 000000433 INF: FPGA: 'ZDACW 30286' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:41:18.228 -07 000000576 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:41:18.238 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:41:18.238 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:41:18.238 -07 000000431 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:18.238 -07 000000431 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:41:18.238 -07 000000431 INF: Y Motor: Moving 1337 steps-11
17-03-17 20:41:18.248 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:18.248 -07 000000476 INF: FPGA: Recv ZDACR 30286
17-03-17 20:41:18.258 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:41:18.258 -07 000000433 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 20:41:18.258 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:41:18.438 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:41:18.438 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-17 20:41:18.508 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:41:18.508 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:41:18.508 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:18.508 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:41:18.518 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:41:18.518 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:18.518 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:18.518 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:18.518 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 20:41:18.528 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:41:18.628 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 20:41:18.628 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:41:18.668 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:18.668 -07 000000448 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:41:18.678 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:41:18.678 -07 000000431 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:18.678 -07 000000431 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:41:18.678 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.099 mm/sec
17-03-17 20:41:19.628 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:19.628 -07 000000478 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:41:19.638 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:19.638 -07 000000431 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:19.658 -07 000000431 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:41:19.658 -07 000000431 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:41:19.658 -07 000000431 INF: Y Motor: Moved to 64.8789 after 1449 ms (table move)
17-03-17 20:41:19.658 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138640 mm (DAC = 30286)
17-03-17 20:41:19.658 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:19.668 -07 000000382 INF: FPGA: Recv ZSGSRD 30874
17-03-17 20:41:19.668 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:41:19.668 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:19.668 -07 000000431 INF: FPGA: Recv ZSGSRD 30876
17-03-17 20:41:19.678 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:19.678 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:19.678 -07 000000627 INF: FPGA: Recv ZSGSRD 30873
17-03-17 20:41:19.688 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:19.688 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:19.688 -07 000000576 INF: FPGA: Recv ZSGSRD 30878
17-03-17 20:41:19.698 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:19.698 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:19.698 -07 000000431 INF: FPGA: Recv ZSGSRD 30872
17-03-17 20:41:19.708 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:19.708 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:19.708 -07 000000382 INF: FPGA: Recv ZSGSRD 30865
17-03-17 20:41:19.718 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:19.718 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:19.718 -07 000000627 INF: FPGA: Recv ZSGSRD 30873
17-03-17 20:41:19.728 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:19.728 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:19.728 -07 000000382 INF: FPGA: Recv ZSGSRD 30866
17-03-17 20:41:19.738 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:19.738 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:19.738 -07 000000431 INF: FPGA: Recv ZSGSRD 30867
17-03-17 20:41:19.748 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:19.748 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:19.748 -07 000000431 INF: FPGA: Recv ZSGSRD 30870
17-03-17 20:41:19.758 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:19.758 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:19.758 -07 000000431 INF: FPGA: Recv ZPIEZORD 26925
17-03-17 20:41:19.768 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:19.768 -07 000000501 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.621 V. Piezo Error = -8.7 V.
17-03-17 20:41:19.768 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30871 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30872 (-137.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30865 (-137.8 uncal um), Max = 30878 (-137.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:41:19.768 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30871, posNoise = 7, negNoise = 6
17-03-17 20:41:19.768 -07 000000501 INF: Z Motor: After move to -0.138640, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:19.768 -07 000000501 INF: Z Motor: Settle wait time = 1453 ms, measure time = 104 ms (allowed 150 ms), total time = 1557 ms
17-03-17 20:41:19.768 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:41:19.818 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 20:41:19.818 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:41:19.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:19.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:19.818 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:19.818 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:19.818 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:41:19.818 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:19.818 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:41:19.818 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:41:19.828 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:41:19.828 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:41:19.828 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:41:19.828 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:41:19.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:41:19.878 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:41:20.078 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:41:20.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:41:20.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:41:20.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 20:41:20.118 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:41:20.118 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 20:41:20.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 20:41:20.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:41:20.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:20.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:41:20.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:41:20.218 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:20.218 -07 000000382 INF: Autofocus start
17-03-17 20:41:20.218 -07 000000382 INF: MeasureProfile start
17-03-17 20:41:20.218 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:20.228 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:41:20.228 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:41:20.228 -07 000000382 INF: MeasureProfile done
17-03-17 20:41:20.228 -07 000000382 INF: X=2  Z correction [um]=-0.01432754
17-03-17 20:41:20.228 -07 000000382 INF: Autofocus finished
17-03-17 20:41:20.428 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:41:20.428 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:41:20.428 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.138645205039438. ----------
17-03-17 20:41:20.428 -07 000000610 INF: Cycle	41	Tile	7	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:41:20.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28795, sync = True, waitForSettling = True)
17-03-17 20:41:20.438 -07 000000610 INF: Z Motor: Moving to -0.131815 mm, started at -0.138645 mm, distance = 6.83 um
17-03-17 20:41:20.438 -07 000000610 INF: FPGA: Xmit ZDACW 28795\n [Z Motor]
17-03-17 20:41:20.438 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:41:20.448 -07 000000610 INF: FPGA: 'ZDACW 28795' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:41:20.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:20.448 -07 000000627 INF: FPGA: Recv ZDACR 28795
17-03-17 20:41:20.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:20.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:41:20.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:20.608 -07 000000501 INF: FPGA: Recv ZSGSRD 29811
17-03-17 20:41:20.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:20.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:20.618 -07 000000382 INF: FPGA: Recv ZSGSRD 29813
17-03-17 20:41:20.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:20.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:20.628 -07 000000501 INF: FPGA: Recv ZSGSRD 29807
17-03-17 20:41:20.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:20.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:20.638 -07 000000501 INF: FPGA: Recv ZSGSRD 29806
17-03-17 20:41:20.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:20.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:20.648 -07 000000382 INF: FPGA: Recv ZSGSRD 29808
17-03-17 20:41:20.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:20.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:20.658 -07 000000627 INF: FPGA: Recv ZSGSRD 29807
17-03-17 20:41:20.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:20.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:20.668 -07 000000627 INF: FPGA: Recv ZSGSRD 29806
17-03-17 20:41:20.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:20.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:20.678 -07 000000382 INF: FPGA: Recv ZSGSRD 29806
17-03-17 20:41:20.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:20.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:20.688 -07 000000627 INF: FPGA: Recv ZSGSRD 29806
17-03-17 20:41:20.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:20.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:20.698 -07 000000459 INF: FPGA: Recv ZSGSRD 29808
17-03-17 20:41:20.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:20.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:20.708 -07 000000627 INF: FPGA: Recv ZPIEZORD 25547
17-03-17 20:41:20.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:20.718 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.394 V. Piezo Error = -9.4 V.
17-03-17 20:41:20.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29808 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29807 (-131.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29806 (-131.0 uncal um), Max = 29813 (-131.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 20:41:20.718 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29808, posNoise = 5, negNoise = 2
17-03-17 20:41:20.718 -07 000000610 INF: Z Motor: After move to -0.131815, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:20.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:41:20.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:20.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:20.718 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:20.718 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:20.718 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:41:20.718 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:41:20.718 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:41:20.718 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:20.718 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:41:20.718 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:41:20.718 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:41:20.718 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:41:20.728 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:41:20.728 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:41:20.728 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:41:20.728 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:41:20.738 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:41:20.738 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:41:20.738 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:41:20.738 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:41:20.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 28972 150\n [Camera]
17-03-17 20:41:20.938 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 20:41:21.328 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.98264,
17-03-17 20:41:21.358 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:41:21.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:41:21.358 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:21.358 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:41:21.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:41:21.358 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:21.358 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:21.358 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1460549448, 0x0, 391868352) start.
17-03-17 20:41:21.368 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:21.368 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:41:21.548 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28972 803
17-03-17 20:41:21.698 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 955
17-03-17 20:41:21.748 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1460549448, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:41:21.748 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:41:21.748 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:21.758 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:21.758 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:41:21.808 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:41:21.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:41:21.868 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 502 ms.
17-03-17 20:41:21.868 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-17 20:41:21.868 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:21.868 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:41:21.878 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-17 20:41:21.898 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:41:21.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:41:21.898 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:21.908 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:41:21.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:41:21.908 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:21.908 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:21.908 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:41:21.908 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:21.908 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:41:22.088 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:41:22.088 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:41:22.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 28972 150' command took 2 ms to send, 1348 ms to get response, and 1354 ms overall
17-03-17 20:41:22.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:41:22.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131816267532746. ------
17-03-17 20:41:22.098 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:22.098 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13837 mm
17-03-17 20:41:22.098 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:41:22.098 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:41:22.098 -07 000000415 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 20:41:22.098 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30228, sync = True, waitForSettling = False)
17-03-17 20:41:22.098 -07 000000551 INF: Z Motor: Moving to -0.138375 mm, started at -0.131816 mm, distance = -6.56 um
17-03-17 20:41:22.098 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:22.108 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:41:22.108 -07 000000551 INF: FPGA: Xmit ZDACW 30228\n [Z Motor]
17-03-17 20:41:22.108 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:41:22.118 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:22.118 -07 000000551 INF: FPGA: 'ZDACW 30228' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:22.118 -07 000000541 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:41:22.128 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:41:22.128 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:41:22.128 -07 000000415 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:22.128 -07 000000415 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:41:22.128 -07 000000415 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:41:22.138 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:22.138 -07 000000541 INF: FPGA: Recv ZDACR 30228
17-03-17 20:41:22.148 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:41:22.148 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:41:22.148 -07 000000551 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 20:41:22.298 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:41:22.298 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:41:22.298 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:22.298 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:22.298 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:41:22.298 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:41:22.298 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:22.308 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:22.308 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:41:22.308 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:41:22.328 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:41:22.328 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:41:22.518 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:41:22.518 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:41:22.558 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:23.238 -07 000000429 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:41:23.238 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 670 ms to get response, and 676 ms overall
17-03-17 20:41:23.238 -07 000000415 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:23.238 -07 000000415 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:41:23.238 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-17 20:41:24.188 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:24.188 -07 000000433 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:41:24.198 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:24.198 -07 000000415 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:24.218 -07 000000415 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:41:24.218 -07 000000415 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:41:24.218 -07 000000415 INF: Y Motor: Moved to 65.7144 after 2116 ms (table move)
17-03-17 20:41:24.218 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138375 mm (DAC = 30228)
17-03-17 20:41:24.218 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:24.228 -07 000000478 INF: FPGA: Recv ZSGSRD 30830
17-03-17 20:41:24.228 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:41:24.228 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:24.228 -07 000000429 INF: FPGA: Recv ZSGSRD 30828
17-03-17 20:41:24.238 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:41:24.238 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:24.238 -07 000000429 INF: FPGA: Recv ZSGSRD 30827
17-03-17 20:41:24.248 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:24.248 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:24.248 -07 000000459 INF: FPGA: Recv ZSGSRD 30833
17-03-17 20:41:24.258 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:24.258 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:24.258 -07 000000429 INF: FPGA: Recv ZSGSRD 30823
17-03-17 20:41:24.268 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:24.268 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:24.268 -07 000000478 INF: FPGA: Recv ZSGSRD 30828
17-03-17 20:41:24.278 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:24.278 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:24.278 -07 000000478 INF: FPGA: Recv ZSGSRD 30832
17-03-17 20:41:24.288 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:24.288 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:24.288 -07 000000415 INF: FPGA: Recv ZSGSRD 30835
17-03-17 20:41:24.298 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:24.298 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:24.298 -07 000000478 INF: FPGA: Recv ZSGSRD 30829
17-03-17 20:41:24.308 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:24.308 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:24.308 -07 000000429 INF: FPGA: Recv ZSGSRD 30828
17-03-17 20:41:24.318 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:24.318 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:24.318 -07 000000433 INF: FPGA: Recv ZPIEZORD 26863
17-03-17 20:41:24.328 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:24.328 -07 000000627 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.612 V. Piezo Error = -8.7 V.
17-03-17 20:41:24.328 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30829 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30828 (-137.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30823 (-137.5 uncal um), Max = 30835 (-137.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:41:24.328 -07 000000627 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30829, posNoise = 6, negNoise = 6
17-03-17 20:41:24.328 -07 000000627 INF: Z Motor: After move to -0.138375, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:24.328 -07 000000627 INF: Z Motor: Settle wait time = 2119 ms, measure time = 102 ms (allowed 150 ms), total time = 2221 ms
17-03-17 20:41:24.328 -07 000000627 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:41:24.378 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2273 ms
17-03-17 20:41:24.378 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:41:24.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:24.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:24.378 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:24.378 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:41:24.378 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:24.378 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:24.388 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:41:24.388 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:41:24.388 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:41:24.388 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:41:24.398 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:41:24.398 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:41:24.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:41:24.438 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:41:24.638 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:41:24.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:41:24.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:41:24.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) start.
17-03-17 20:41:24.678 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:41:24.678 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 20:41:24.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:41:24.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:41:24.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:24.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:41:24.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:41:24.778 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:24.778 -07 000000429 INF: Autofocus start
17-03-17 20:41:24.778 -07 000000429 INF: MeasureProfile start
17-03-17 20:41:24.778 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:24.788 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:41:24.788 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:41:24.788 -07 000000429 INF: MeasureProfile done
17-03-17 20:41:24.788 -07 000000429 INF: X=9  Z correction [um]=0.01934518
17-03-17 20:41:24.788 -07 000000429 INF: Autofocus finished
17-03-17 20:41:24.988 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:41:24.988 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:41:24.988 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138375388129484. ----------
17-03-17 20:41:24.998 -07 000000610 INF: Cycle	41	Tile	8	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:41:24.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28744, sync = True, waitForSettling = True)
17-03-17 20:41:24.998 -07 000000610 INF: Z Motor: Moving to -0.131582 mm, started at -0.138375 mm, distance = 6.79 um
17-03-17 20:41:24.998 -07 000000610 INF: FPGA: Xmit ZDACW 28744\n [Z Motor]
17-03-17 20:41:24.998 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:41:25.008 -07 000000610 INF: FPGA: 'ZDACW 28744' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:41:25.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:25.008 -07 000000459 INF: FPGA: Recv ZDACR 28744
17-03-17 20:41:25.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:25.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:41:25.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:25.168 -07 000000627 INF: FPGA: Recv ZSGSRD 29774
17-03-17 20:41:25.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:25.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:25.178 -07 000000433 INF: FPGA: Recv ZSGSRD 29776
17-03-17 20:41:25.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:25.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:25.188 -07 000000429 INF: FPGA: Recv ZSGSRD 29773
17-03-17 20:41:25.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:25.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:25.198 -07 000000433 INF: FPGA: Recv ZSGSRD 29768
17-03-17 20:41:25.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:25.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:25.208 -07 000000459 INF: FPGA: Recv ZSGSRD 29773
17-03-17 20:41:25.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:25.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:25.218 -07 000000627 INF: FPGA: Recv ZSGSRD 29768
17-03-17 20:41:25.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:25.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:25.228 -07 000000433 INF: FPGA: Recv ZSGSRD 29777
17-03-17 20:41:25.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:25.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:25.238 -07 000000415 INF: FPGA: Recv ZSGSRD 29774
17-03-17 20:41:25.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:25.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:25.248 -07 000000627 INF: FPGA: Recv ZSGSRD 29772
17-03-17 20:41:25.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:25.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:25.258 -07 000000627 INF: FPGA: Recv ZSGSRD 29775
17-03-17 20:41:25.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:25.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:25.268 -07 000000429 INF: FPGA: Recv ZPIEZORD 25425
17-03-17 20:41:25.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:25.278 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.386 V. Piezo Error = -9.5 V.
17-03-17 20:41:25.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29773 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29774 (-130.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29768 (-130.8 uncal um), Max = 29777 (-130.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:41:25.278 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29773, posNoise = 4, negNoise = 5
17-03-17 20:41:25.278 -07 000000610 INF: Z Motor: After move to -0.131582, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:25.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:41:25.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:25.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:25.278 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:41:25.278 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:25.278 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:25.278 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:25.278 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:41:25.278 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:41:25.278 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:41:25.278 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:41:25.278 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:41:25.278 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:41:25.288 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:41:25.288 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:41:25.288 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:41:25.288 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:41:25.298 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 20:41:25.298 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:41:25.298 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 20:41:25.298 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:41:25.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 28921 150\n [Camera]
17-03-17 20:41:25.498 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 20:41:25.918 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:41:25.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:41:25.918 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:41:25.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:41:25.918 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:25.918 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:25.918 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:41:25.918 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:25.918 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:25.918 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:41:26.108 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28921 803
17-03-17 20:41:26.258 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:41:26.318 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:41:26.318 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:41:26.318 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:26.318 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:41:26.318 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:41:26.318 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:26.328 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:41:26.328 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:41:26.328 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:41:26.328 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:41:26.458 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:41:26.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:41:26.468 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:26.468 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:26.468 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:41:26.468 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:41:26.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:41:26.468 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:26.468 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:26.468 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:41:26.658 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:41:26.658 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:41:26.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 28921 150' command took 2 ms to send, 1351 ms to get response, and 1354 ms overall
17-03-17 20:41:26.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:41:26.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131591420107784. ------
17-03-17 20:41:26.658 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13793 mm
17-03-17 20:41:26.658 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:41:26.658 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:26.668 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:41:26.668 -07 000000429 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 20:41:26.668 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:26.668 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30130, sync = True, waitForSettling = False)
17-03-17 20:41:26.668 -07 000000415 INF: Z Motor: Moving to -0.137926 mm, started at -0.131591 mm, distance = -6.33 um
17-03-17 20:41:26.668 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:26.668 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:41:26.668 -07 000000459 INF: FPGA: Recv YRDPOS 134584
17-03-17 20:41:26.678 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:26.678 -07 000000429 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:26.678 -07 000000429 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:41:26.678 -07 000000429 INF: Y Motor: Moving 1340 steps-17
17-03-17 20:41:26.688 -07 000000415 INF: FPGA: Xmit ZDACW 30130\n [Z Motor]
17-03-17 20:41:26.688 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.996267,
17-03-17 20:41:26.688 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:41:26.698 -07 000000415 INF: FPGA: 'ZDACW 30130' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:41:26.698 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:41:26.708 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:41:26.728 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:26.728 -07 000000459 INF: FPGA: Recv ZDACR 30130
17-03-17 20:41:26.738 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 20:41:26.738 -07 000000415 INF: Z Motor: MoveAbsStepped took 69 ms (did NOT wait for settling yet))
17-03-17 20:41:26.808 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:41:26.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:41:26.868 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:41:26.868 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:41:26.868 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:26.868 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:41:26.868 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:41:26.868 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:26.868 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:26.868 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:41:26.868 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:26.878 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:41:26.898 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:41:26.898 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 234 ms overall
17-03-17 20:41:27.078 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 20:41:27.078 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 403 ms overall
17-03-17 20:41:27.118 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:27.118 -07 000000501 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:41:27.128 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:41:27.128 -07 000000429 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:27.128 -07 000000429 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:41:27.128 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 403 ms, distance = 0.838 mm, average velocity = 2.080 mm/sec
17-03-17 20:41:28.078 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:28.238 -07 000000458 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:41:28.238 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 150 ms to get response, and 160 ms overall
17-03-17 20:41:28.238 -07 000000429 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:28.258 -07 000000429 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:41:28.258 -07 000000429 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:41:28.258 -07 000000429 INF: Y Motor: Moved to 66.5396 after 1597 ms (table move)
17-03-17 20:41:28.268 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137926 mm (DAC = 30130)
17-03-17 20:41:28.268 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:28.268 -07 000000429 INF: FPGA: Recv ZSGSRD 30756
17-03-17 20:41:28.278 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:41:28.278 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:28.278 -07 000000627 INF: FPGA: Recv ZSGSRD 30759
17-03-17 20:41:28.288 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:28.288 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:28.288 -07 000000429 INF: FPGA: Recv ZSGSRD 30766
17-03-17 20:41:28.298 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:28.298 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:28.298 -07 000000512 INF: FPGA: Recv ZSGSRD 30763
17-03-17 20:41:28.308 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:28.308 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:28.308 -07 000000433 INF: FPGA: Recv ZSGSRD 30760
17-03-17 20:41:28.318 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:28.318 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:28.318 -07 000000512 INF: FPGA: Recv ZSGSRD 30766
17-03-17 20:41:28.328 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:28.328 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:28.328 -07 000000433 INF: FPGA: Recv ZSGSRD 30752
17-03-17 20:41:28.338 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:28.338 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:28.338 -07 000000627 INF: FPGA: Recv ZSGSRD 30754
17-03-17 20:41:28.348 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:28.348 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:28.348 -07 000000433 INF: FPGA: Recv ZSGSRD 30756
17-03-17 20:41:28.358 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:28.358 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:28.358 -07 000000627 INF: FPGA: Recv ZSGSRD 30759
17-03-17 20:41:28.368 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:28.368 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:28.368 -07 000000431 INF: FPGA: Recv ZPIEZORD 26803
17-03-17 20:41:28.378 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:28.378 -07 000000448 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.598 V. Piezo Error = -8.7 V.
17-03-17 20:41:28.378 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30759 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30759 (-137.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30752 (-137.1 uncal um), Max = 30766 (-137.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:41:28.378 -07 000000448 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30759, posNoise = 7, negNoise = 7
17-03-17 20:41:28.378 -07 000000448 INF: Z Motor: After move to -0.137926, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:28.378 -07 000000448 INF: Z Motor: Settle wait time = 1601 ms, measure time = 108 ms (allowed 150 ms), total time = 1709 ms
17-03-17 20:41:28.378 -07 000000448 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 20:41:28.428 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1762 ms
17-03-17 20:41:28.428 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:41:28.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:28.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:28.428 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:28.428 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:28.428 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:41:28.428 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:28.428 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:41:28.428 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:41:28.438 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:41:28.438 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:41:28.438 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:41:28.438 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:41:28.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:41:28.488 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:41:28.688 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:41:28.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:41:28.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:41:28.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:41:28.728 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:41:28.728 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 20:41:28.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:41:28.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 20:41:28.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:28.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:41:28.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 20:41:28.828 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:28.828 -07 000000433 INF: Autofocus start
17-03-17 20:41:28.828 -07 000000433 INF: MeasureProfile start
17-03-17 20:41:28.828 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:28.838 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:41:28.838 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:41:28.838 -07 000000433 INF: MeasureProfile done
17-03-17 20:41:28.838 -07 000000433 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:41:28.838 -07 000000433 INF: Autofocus finished
17-03-17 20:41:29.038 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:41:29.038 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 20:41:29.048 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.13792569327956. ----------
17-03-17 20:41:29.048 -07 000000610 INF: Cycle	41	Tile	9	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:41:29.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28654, sync = True, waitForSettling = True)
17-03-17 20:41:29.048 -07 000000610 INF: Z Motor: Moving to -0.131170 mm, started at -0.137926 mm, distance = 6.76 um
17-03-17 20:41:29.048 -07 000000610 INF: FPGA: Xmit ZDACW 28654\n [Z Motor]
17-03-17 20:41:29.048 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:41:29.058 -07 000000610 INF: FPGA: 'ZDACW 28654' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:41:29.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:29.058 -07 000000429 INF: FPGA: Recv ZDACR 28654
17-03-17 20:41:29.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:29.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:41:29.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:29.218 -07 000000459 INF: FPGA: Recv ZSGSRD 29712
17-03-17 20:41:29.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:29.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:29.228 -07 000000429 INF: FPGA: Recv ZSGSRD 29709
17-03-17 20:41:29.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:29.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:29.238 -07 000000429 INF: FPGA: Recv ZSGSRD 29708
17-03-17 20:41:29.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:29.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:29.248 -07 000000429 INF: FPGA: Recv ZSGSRD 29707
17-03-17 20:41:29.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:41:29.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:29.258 -07 000000429 INF: FPGA: Recv ZSGSRD 29709
17-03-17 20:41:29.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:29.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:29.268 -07 000000512 INF: FPGA: Recv ZSGSRD 29709
17-03-17 20:41:29.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:29.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:29.278 -07 000000429 INF: FPGA: Recv ZSGSRD 29699
17-03-17 20:41:29.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:29.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:29.288 -07 000000459 INF: FPGA: Recv ZSGSRD 29703
17-03-17 20:41:29.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:29.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:29.298 -07 000000459 INF: FPGA: Recv ZSGSRD 29715
17-03-17 20:41:29.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:29.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:29.308 -07 000000459 INF: FPGA: Recv ZSGSRD 29709
17-03-17 20:41:29.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:29.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:29.318 -07 000000476 INF: FPGA: Recv ZPIEZORD 25413
17-03-17 20:41:29.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:29.328 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.372 V. Piezo Error = -9.4 V.
17-03-17 20:41:29.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29708 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29709 (-130.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29699 (-130.3 uncal um), Max = 29715 (-130.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:41:29.328 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29708, posNoise = 7, negNoise = 9
17-03-17 20:41:29.328 -07 000000610 INF: Z Motor: After move to -0.131170, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:29.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:41:29.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:29.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:29.328 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:29.328 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:41:29.328 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:29.328 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:29.328 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:41:29.328 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:41:29.328 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:41:29.328 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:41:29.328 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:41:29.328 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:41:29.338 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:41:29.338 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:41:29.338 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:41:29.338 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:41:29.348 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:41:29.348 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:41:29.348 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:41:29.348 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:41:29.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 28831 150\n [Camera]
17-03-17 20:41:29.558 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:41:29.968 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:41:29.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:41:29.968 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:29.978 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:29.978 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:41:29.978 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:41:29.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:41:29.978 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:29.978 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:29.978 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:41:30.168 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28831 803
17-03-17 20:41:30.318 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:41:30.378 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:41:30.378 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:41:30.378 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:30.378 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:41:30.378 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:41:30.378 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:30.378 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:30.378 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:41:30.378 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:30.388 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:41:30.518 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:41:30.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:41:30.518 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:30.518 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:30.518 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 20:41:30.518 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:41:30.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:41:30.518 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:30.518 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:30.518 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 20:41:30.708 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:41:30.708 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:41:30.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 28831 150' command took 2 ms to send, 1344 ms to get response, and 1354 ms overall
17-03-17 20:41:30.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:41:30.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.13117384631857. ------
17-03-17 20:41:30.718 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:30.718 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13795 mm
17-03-17 20:41:30.718 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:41:30.718 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:30.718 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:41:30.718 -07 000000627 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 20:41:30.718 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 30136, sync = True, waitForSettling = False)
17-03-17 20:41:30.718 -07 000000433 INF: Z Motor: Moving to -0.137954 mm, started at -0.131174 mm, distance = -6.78 um
17-03-17 20:41:30.728 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:30.728 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:30.728 -07 000000459 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:41:30.738 -07 000000433 INF: FPGA: Xmit ZDACW 30136\n [Z Motor]
17-03-17 20:41:30.738 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:41:30.738 -07 000000627 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:30.738 -07 000000627 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:41:30.738 -07 000000627 INF: Y Motor: Moving 1349 steps-27
17-03-17 20:41:30.738 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:41:30.748 -07 000000433 INF: FPGA: 'ZDACW 30136' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:41:30.748 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:41:30.758 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:41:30.768 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:30.768 -07 000000476 INF: FPGA: Recv ZDACR 30136
17-03-17 20:41:30.778 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:41:30.778 -07 000000433 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 20:41:30.918 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 20:41:30.918 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:41:30.918 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:30.918 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 20:41:30.918 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:41:30.918 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:30.928 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:30.928 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:41:30.928 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 20:41:30.938 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:41:30.948 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:41:30.948 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:41:31.128 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 20:41:31.128 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:41:31.168 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:31.168 -07 000000501 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:41:31.178 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:41:31.178 -07 000000627 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:31.178 -07 000000627 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 20:41:31.178 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 20:41:31.808 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:41:31.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:41:32.088 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.977204,
17-03-17 20:41:32.128 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:32.128 -07 000000458 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:41:32.138 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:32.138 -07 000000627 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:32.158 -07 000000627 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:41:32.158 -07 000000627 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:41:32.158 -07 000000627 INF: Y Motor: Moved to 67.3726 after 1439 ms (table move)
17-03-17 20:41:32.158 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137954 mm (DAC = 30136)
17-03-17 20:41:32.158 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:32.168 -07 000000448 INF: FPGA: Recv ZSGSRD 30773
17-03-17 20:41:32.168 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:41:32.168 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:32.168 -07 000000431 INF: FPGA: Recv ZSGSRD 30764
17-03-17 20:41:32.178 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:41:32.178 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:32.178 -07 000000459 INF: FPGA: Recv ZSGSRD 30762
17-03-17 20:41:32.188 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:32.188 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:32.188 -07 000000458 INF: FPGA: Recv ZSGSRD 30767
17-03-17 20:41:32.198 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:32.198 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:32.198 -07 000000448 INF: FPGA: Recv ZSGSRD 30768
17-03-17 20:41:32.208 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:32.208 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:32.208 -07 000000431 INF: FPGA: Recv ZSGSRD 30769
17-03-17 20:41:32.218 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:32.218 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:32.218 -07 000000476 INF: FPGA: Recv ZSGSRD 30763
17-03-17 20:41:32.228 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:32.228 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:32.228 -07 000000458 INF: FPGA: Recv ZSGSRD 30760
17-03-17 20:41:32.238 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:32.238 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:32.238 -07 000000448 INF: FPGA: Recv ZSGSRD 30765
17-03-17 20:41:32.248 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:32.248 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:32.248 -07 000000431 INF: FPGA: Recv ZSGSRD 30763
17-03-17 20:41:32.258 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:32.258 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:32.258 -07 000000459 INF: FPGA: Recv ZPIEZORD 26826
17-03-17 20:41:32.268 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:32.268 -07 000000429 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.598 V. Piezo Error = -8.7 V.
17-03-17 20:41:32.268 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30765 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30764 (-137.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30760 (-137.1 uncal um), Max = 30773 (-137.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:41:32.268 -07 000000429 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30765, posNoise = 8, negNoise = 5
17-03-17 20:41:32.268 -07 000000429 INF: Z Motor: After move to -0.137954, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:32.268 -07 000000429 INF: Z Motor: Settle wait time = 1442 ms, measure time = 103 ms (allowed 150 ms), total time = 1545 ms
17-03-17 20:41:32.268 -07 000000429 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:41:32.318 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 20:41:32.318 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:41:32.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:32.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:32.318 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:32.318 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:41:32.328 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:32.328 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:32.328 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:41:32.328 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:41:32.328 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:41:32.328 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:41:32.338 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:41:32.338 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:41:32.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:41:32.378 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:41:32.578 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:41:32.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:41:32.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:41:32.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617610680, 0x0, 559484976) start.
17-03-17 20:41:32.618 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:41:32.618 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 20:41:32.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 20:41:32.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617610680, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:41:32.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:32.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:41:32.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:41:32.718 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:32.718 -07 000000382 INF: Autofocus start
17-03-17 20:41:32.718 -07 000000382 INF: MeasureProfile start
17-03-17 20:41:32.718 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:32.728 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:41:32.728 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:41:32.728 -07 000000382 INF: MeasureProfile done
17-03-17 20:41:32.728 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:41:32.728 -07 000000382 INF: Autofocus finished
17-03-17 20:41:32.928 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:41:32.928 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:41:32.928 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.137964238552411. ----------
17-03-17 20:41:32.938 -07 000000610 INF: Cycle	41	Tile	10	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:41:32.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28643, sync = True, waitForSettling = True)
17-03-17 20:41:32.938 -07 000000610 INF: Z Motor: Moving to -0.131119 mm, started at -0.137964 mm, distance = 6.84 um
17-03-17 20:41:32.938 -07 000000610 INF: FPGA: Xmit ZDACW 28643\n [Z Motor]
17-03-17 20:41:32.938 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:41:32.948 -07 000000610 INF: FPGA: 'ZDACW 28643' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:41:32.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:32.948 -07 000000448 INF: FPGA: Recv ZDACR 28643
17-03-17 20:41:32.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:32.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:41:33.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:33.108 -07 000000382 INF: FPGA: Recv ZSGSRD 29701
17-03-17 20:41:33.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:33.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:33.118 -07 000000627 INF: FPGA: Recv ZSGSRD 29699
17-03-17 20:41:33.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:33.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:33.128 -07 000000459 INF: FPGA: Recv ZSGSRD 29699
17-03-17 20:41:33.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:33.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:33.138 -07 000000431 INF: FPGA: Recv ZSGSRD 29696
17-03-17 20:41:33.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:33.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:33.148 -07 000000478 INF: FPGA: Recv ZSGSRD 29696
17-03-17 20:41:33.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:33.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:33.158 -07 000000512 INF: FPGA: Recv ZSGSRD 29695
17-03-17 20:41:33.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:33.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:33.168 -07 000000501 INF: FPGA: Recv ZSGSRD 29706
17-03-17 20:41:33.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:33.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:33.178 -07 000000476 INF: FPGA: Recv ZSGSRD 29702
17-03-17 20:41:33.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:33.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:33.188 -07 000000431 INF: FPGA: Recv ZSGSRD 29702
17-03-17 20:41:33.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:33.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:33.198 -07 000000458 INF: FPGA: Recv ZSGSRD 29706
17-03-17 20:41:33.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:33.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:33.208 -07 000000541 INF: FPGA: Recv ZPIEZORD 25389
17-03-17 20:41:33.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:33.218 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -9.5 V.
17-03-17 20:41:33.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29700 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29700 (-130.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29695 (-130.3 uncal um), Max = 29706 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:41:33.218 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29700, posNoise = 6, negNoise = 5
17-03-17 20:41:33.218 -07 000000610 INF: Z Motor: After move to -0.131119, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:33.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:41:33.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:33.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:33.218 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:33.218 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:33.218 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:41:33.218 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:41:33.218 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:41:33.218 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:33.218 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:41:33.218 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:41:33.218 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:41:33.218 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:41:33.228 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:41:33.228 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:41:33.228 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:41:33.228 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:41:33.238 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:41:33.238 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:41:33.238 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:41:33.238 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:41:33.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 28820 150\n [Camera]
17-03-17 20:41:33.438 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:41:33.858 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:41:33.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:41:33.858 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:33.858 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:33.858 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 20:41:33.858 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:41:33.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:41:33.858 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:33.858 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:33.858 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 20:41:34.048 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28820 803
17-03-17 20:41:34.198 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:41:34.238 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:41:34.238 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:41:34.238 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:34.238 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 20:41:34.238 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:41:34.238 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:34.248 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:41:34.248 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:34.248 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:41:34.248 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:41:34.398 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:41:34.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:41:34.398 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:34.398 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:34.398 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 20:41:34.408 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:41:34.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:41:34.408 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:34.408 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:34.408 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 20:41:34.588 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:41:34.588 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:41:34.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 28820 150' command took 2 ms to send, 1347 ms to get response, and 1353 ms overall
17-03-17 20:41:34.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:41:34.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.131122452621435. ------
17-03-17 20:41:34.598 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:34.598 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13759 mm
17-03-17 20:41:34.598 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:41:34.598 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:34.598 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30058, sync = True, waitForSettling = False)
17-03-17 20:41:34.598 -07 000000382 INF: Z Motor: Moving to -0.137597 mm, started at -0.131122 mm, distance = -6.47 um
17-03-17 20:41:34.598 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:41:34.598 -07 000000478 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 20:41:34.608 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:41:34.608 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:34.608 -07 000000433 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:41:34.618 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:34.618 -07 000000382 INF: FPGA: Xmit ZDACW 30058\n [Z Motor]
17-03-17 20:41:34.618 -07 000000478 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:34.618 -07 000000478 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:41:34.618 -07 000000478 INF: Y Motor: Moving 1344 steps-22
17-03-17 20:41:34.618 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:41:34.628 -07 000000382 INF: FPGA: 'ZDACW 30058' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:41:34.628 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:41:34.638 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:41:34.648 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:34.648 -07 000000433 INF: FPGA: Recv ZDACR 30058
17-03-17 20:41:34.658 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:41:34.658 -07 000000382 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:41:34.798 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 20:41:34.798 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:41:34.798 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:34.798 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:41:34.798 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:41:34.798 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:34.798 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:34.808 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:41:34.808 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:41:34.808 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:41:34.828 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:41:34.828 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:41:35.008 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 20:41:35.008 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:41:35.048 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:35.048 -07 000000433 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:41:35.058 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:41:35.058 -07 000000478 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:35.058 -07 000000478 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:41:35.058 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-17 20:41:36.008 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:36.008 -07 000000433 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:41:36.018 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:36.018 -07 000000478 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:36.038 -07 000000478 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:41:36.038 -07 000000478 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:41:36.038 -07 000000478 INF: Y Motor: Moved to 68.2056 after 1433 ms (table move)
17-03-17 20:41:36.038 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137597 mm (DAC = 30058)
17-03-17 20:41:36.038 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:36.038 -07 000000431 INF: FPGA: Recv ZSGSRD 30707
17-03-17 20:41:36.048 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:41:36.048 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:36.048 -07 000000576 INF: FPGA: Recv ZSGSRD 30706
17-03-17 20:41:36.058 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:36.058 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:36.058 -07 000000382 INF: FPGA: Recv ZSGSRD 30705
17-03-17 20:41:36.068 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:36.068 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:36.068 -07 000000431 INF: FPGA: Recv ZSGSRD 30718
17-03-17 20:41:36.078 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:36.078 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:36.078 -07 000000478 INF: FPGA: Recv ZSGSRD 30710
17-03-17 20:41:36.088 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:36.088 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:36.088 -07 000000433 INF: FPGA: Recv ZSGSRD 30713
17-03-17 20:41:36.098 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:36.098 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:36.098 -07 000000448 INF: FPGA: Recv ZSGSRD 30707
17-03-17 20:41:36.108 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:36.108 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:36.108 -07 000000459 INF: FPGA: Recv ZSGSRD 30704
17-03-17 20:41:36.118 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:36.118 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:36.118 -07 000000433 INF: FPGA: Recv ZSGSRD 30707
17-03-17 20:41:36.128 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:36.128 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:36.128 -07 000000576 INF: FPGA: Recv ZSGSRD 30705
17-03-17 20:41:36.138 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:36.138 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:36.138 -07 000000478 INF: FPGA: Recv ZPIEZORD 26714
17-03-17 20:41:36.148 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:36.148 -07 000000512 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.587 V. Piezo Error = -8.8 V.
17-03-17 20:41:36.148 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30708 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30707 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30704 (-136.8 uncal um), Max = 30718 (-136.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:41:36.148 -07 000000512 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30708, posNoise = 10, negNoise = 4
17-03-17 20:41:36.148 -07 000000512 INF: Z Motor: After move to -0.137597, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:36.148 -07 000000512 INF: Z Motor: Settle wait time = 1436 ms, measure time = 105 ms (allowed 150 ms), total time = 1541 ms
17-03-17 20:41:36.148 -07 000000512 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:41:36.198 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 20:41:36.198 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:41:36.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:36.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:36.198 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:36.198 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:36.198 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:41:36.198 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:36.198 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:41:36.198 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:41:36.208 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:41:36.208 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:41:36.218 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:41:36.218 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:41:36.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:41:36.268 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:41:36.468 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:41:36.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:41:36.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:41:36.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 20:41:36.498 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:41:36.508 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:41:36.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 20:41:36.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:41:36.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:36.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:41:36.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:41:36.608 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:36.608 -07 000000478 INF: Autofocus start
17-03-17 20:41:36.608 -07 000000478 INF: MeasureProfile start
17-03-17 20:41:36.608 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:36.618 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:41:36.618 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:41:36.628 -07 000000478 INF: MeasureProfile done
17-03-17 20:41:36.628 -07 000000478 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:41:36.628 -07 000000478 INF: Autofocus finished
17-03-17 20:41:36.808 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:41:36.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:41:36.818 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:41:36.818 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 20:41:36.818 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.13759805846033. ----------
17-03-17 20:41:36.818 -07 000000610 INF: Cycle	41	Tile	11	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:41:36.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28565, sync = True, waitForSettling = True)
17-03-17 20:41:36.828 -07 000000610 INF: Z Motor: Moving to -0.130762 mm, started at -0.137598 mm, distance = 6.84 um
17-03-17 20:41:36.828 -07 000000610 INF: FPGA: Xmit ZDACW 28565\n [Z Motor]
17-03-17 20:41:36.828 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:41:36.838 -07 000000610 INF: FPGA: 'ZDACW 28565' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:41:36.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:36.838 -07 000000576 INF: FPGA: Recv ZDACR 28565
17-03-17 20:41:36.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:36.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:41:36.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:36.998 -07 000000459 INF: FPGA: Recv ZSGSRD 29642
17-03-17 20:41:37.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:37.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:37.008 -07 000000448 INF: FPGA: Recv ZSGSRD 29650
17-03-17 20:41:37.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:37.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:37.018 -07 000000576 INF: FPGA: Recv ZSGSRD 29641
17-03-17 20:41:37.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:37.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:37.028 -07 000000433 INF: FPGA: Recv ZSGSRD 29642
17-03-17 20:41:37.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:37.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:37.038 -07 000000512 INF: FPGA: Recv ZSGSRD 29640
17-03-17 20:41:37.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:37.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:37.048 -07 000000576 INF: FPGA: Recv ZSGSRD 29648
17-03-17 20:41:37.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:37.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:37.058 -07 000000433 INF: FPGA: Recv ZSGSRD 29647
17-03-17 20:41:37.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:37.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:37.068 -07 000000576 INF: FPGA: Recv ZSGSRD 29646
17-03-17 20:41:37.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:37.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:37.078 -07 000000627 INF: FPGA: Recv ZSGSRD 29644
17-03-17 20:41:37.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:37.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:37.088 -07 000000448 INF: FPGA: Recv ZSGSRD 29641
17-03-17 20:41:37.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:37.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:37.098 -07 000000459 INF: FPGA: Recv ZPIEZORD 25328
17-03-17 20:41:37.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:37.108 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.359 V. Piezo Error = -9.5 V.
17-03-17 20:41:37.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29644 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29643 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29640 (-130.0 uncal um), Max = 29650 (-130.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:41:37.108 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29644, posNoise = 6, negNoise = 4
17-03-17 20:41:37.108 -07 000000610 INF: Z Motor: After move to -0.130762, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:37.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:41:37.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:37.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:37.108 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:37.108 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:41:37.108 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:37.108 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:41:37.108 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:37.108 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:41:37.108 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:41:37.108 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:41:37.108 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:41:37.108 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:41:37.118 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:41:37.118 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:41:37.118 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:41:37.118 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:41:37.118 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:41:37.118 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:41:37.128 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:41:37.128 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:41:37.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 28742 150\n [Camera]
17-03-17 20:41:37.338 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:41:37.448 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.012614,
17-03-17 20:41:37.758 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:41:37.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:41:37.758 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:37.758 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:37.758 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 20:41:37.758 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:41:37.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:41:37.758 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:37.758 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:37.758 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 20:41:37.948 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28742 803
17-03-17 20:41:38.098 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:41:38.138 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:41:38.138 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:41:38.138 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:38.138 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 20:41:38.138 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:41:38.138 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:38.138 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:38.148 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:41:38.148 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:41:38.148 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:41:38.298 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:41:38.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:41:38.298 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:38.428 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:41:38.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:41:38.428 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:38.428 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 20:41:38.428 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:38.438 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:38.438 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:41:38.488 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:41:38.488 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:41:38.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 28742 150' command took 2 ms to send, 1346 ms to get response, and 1359 ms overall
17-03-17 20:41:38.488 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:41:38.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130762696741497. ------
17-03-17 20:41:38.498 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:38.498 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13744 mm
17-03-17 20:41:38.498 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:41:38.498 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:41:38.498 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30024, sync = True, waitForSettling = False)
17-03-17 20:41:38.498 -07 000000448 INF: Z Motor: Moving to -0.137441 mm, started at -0.130763 mm, distance = -6.68 um
17-03-17 20:41:38.498 -07 000000541 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 20:41:38.508 -07 000000448 INF: FPGA: Xmit ZDACW 30024\n [Z Motor]
17-03-17 20:41:38.518 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:38.828 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 20:41:38.828 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:41:38.828 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:38.828 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:41:38.828 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:41:38.828 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:38.828 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:38.828 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:38.828 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 534 ms.
17-03-17 20:41:38.838 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:41:38.838 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:38.838 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 20:41:38.838 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 339 ms to get response, and 348 ms overall
17-03-17 20:41:38.848 -07 000000551 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:41:38.848 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 320 ms to get response, and 345 ms overall
17-03-17 20:41:38.848 -07 000000541 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:38.848 -07 000000541 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:41:38.848 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:41:38.848 -07 000000448 INF: FPGA: 'ZDACW 30024' command took 0 ms to send, 329 ms to get response, and 345 ms overall
17-03-17 20:41:38.848 -07 000000541 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:41:38.858 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:38.858 -07 000000551 INF: FPGA: Recv ZDACR 30024
17-03-17 20:41:38.868 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:41:38.868 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:41:38.868 -07 000000448 INF: Z Motor: MoveAbsStepped took 365 ms (did NOT wait for settling yet))
17-03-17 20:41:39.048 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:41:39.048 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:41:39.238 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 20:41:39.238 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 20:41:39.278 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:39.278 -07 000000431 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:41:39.288 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:41:39.288 -07 000000541 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:39.288 -07 000000541 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:41:39.288 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.837 mm, average velocity = 2.114 mm/sec
17-03-17 20:41:40.238 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:40.238 -07 000000551 INF: FPGA: Recv YRDPOS 141369
17-03-17 20:41:40.248 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:40.248 -07 000000541 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:40.268 -07 000000541 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:41:40.268 -07 000000541 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:41:40.268 -07 000000541 INF: Y Motor: Moved to 69.0278 after 1768 ms (table move)
17-03-17 20:41:40.268 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137441 mm (DAC = 30024)
17-03-17 20:41:40.268 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:40.268 -07 000000551 INF: FPGA: Recv ZSGSRD 30688
17-03-17 20:41:40.278 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:41:40.278 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:40.278 -07 000000627 INF: FPGA: Recv ZSGSRD 30687
17-03-17 20:41:40.288 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:40.288 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:40.288 -07 000000431 INF: FPGA: Recv ZSGSRD 30686
17-03-17 20:41:40.298 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:40.298 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:40.298 -07 000000627 INF: FPGA: Recv ZSGSRD 30691
17-03-17 20:41:40.308 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:40.308 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:40.308 -07 000000551 INF: FPGA: Recv ZSGSRD 30689
17-03-17 20:41:40.318 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:40.318 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:40.318 -07 000000541 INF: FPGA: Recv ZSGSRD 30692
17-03-17 20:41:40.328 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:40.328 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:40.328 -07 000000551 INF: FPGA: Recv ZSGSRD 30681
17-03-17 20:41:40.338 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:40.338 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:40.338 -07 000000551 INF: FPGA: Recv ZSGSRD 30683
17-03-17 20:41:40.348 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:40.348 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:40.348 -07 000000541 INF: FPGA: Recv ZSGSRD 30688
17-03-17 20:41:40.358 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:40.358 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:40.358 -07 000000551 INF: FPGA: Recv ZSGSRD 30689
17-03-17 20:41:40.368 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:40.368 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:40.368 -07 000000627 INF: FPGA: Recv ZPIEZORD 26690
17-03-17 20:41:40.378 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:40.378 -07 000000512 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.581 V. Piezo Error = -8.8 V.
17-03-17 20:41:40.378 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30687 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30688 (-136.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30681 (-136.6 uncal um), Max = 30692 (-136.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:41:40.378 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30687, posNoise = 5, negNoise = 6
17-03-17 20:41:40.378 -07 000000512 INF: Z Motor: After move to -0.137441, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:40.378 -07 000000512 INF: Z Motor: Settle wait time = 1772 ms, measure time = 104 ms (allowed 150 ms), total time = 1876 ms
17-03-17 20:41:40.378 -07 000000512 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:41:40.428 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1929 ms
17-03-17 20:41:40.428 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:41:40.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:40.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:40.438 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:41:40.438 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:40.438 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:40.438 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:40.438 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:41:40.438 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:41:40.448 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:41:40.448 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:41:40.448 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:41:40.448 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:41:40.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:41:40.498 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:41:40.698 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:41:40.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:41:40.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:41:40.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424724128, 0x0, 559484976) start.
17-03-17 20:41:40.738 -07 000000431 INF: FPGA: Recv @CAMSNAP 283
17-03-17 20:41:40.738 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 20:41:40.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 287 ms overall
17-03-17 20:41:40.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424724128, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:41:40.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:40.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:41:40.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:41:40.838 -07 000000541 INF: Autofocus start
17-03-17 20:41:40.838 -07 000000541 INF: MeasureProfile start
17-03-17 20:41:40.838 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:40.838 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:40.848 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:41:40.848 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:41:40.848 -07 000000541 INF: MeasureProfile done
17-03-17 20:41:40.848 -07 000000541 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:41:40.848 -07 000000541 INF: Autofocus finished
17-03-17 20:41:41.048 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:41:41.048 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 20:41:41.048 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.137463150005353. ----------
17-03-17 20:41:41.048 -07 000000610 INF: Cycle	41	Tile	12	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:41:41.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28519, sync = True, waitForSettling = True)
17-03-17 20:41:41.058 -07 000000610 INF: Z Motor: Moving to -0.130552 mm, started at -0.137463 mm, distance = 6.91 um
17-03-17 20:41:41.058 -07 000000610 INF: FPGA: Xmit ZDACW 28519\n [Z Motor]
17-03-17 20:41:41.058 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:41:41.068 -07 000000610 INF: FPGA: 'ZDACW 28519' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:41.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:41.068 -07 000000541 INF: FPGA: Recv ZDACR 28519
17-03-17 20:41:41.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:41.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:41:41.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:41.228 -07 000000627 INF: FPGA: Recv ZSGSRD 29616
17-03-17 20:41:41.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:41.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:41.238 -07 000000551 INF: FPGA: Recv ZSGSRD 29611
17-03-17 20:41:41.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:41.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:41.248 -07 000000512 INF: FPGA: Recv ZSGSRD 29619
17-03-17 20:41:41.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:41.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:41.258 -07 000000551 INF: FPGA: Recv ZSGSRD 29614
17-03-17 20:41:41.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:41.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:41.268 -07 000000627 INF: FPGA: Recv ZSGSRD 29608
17-03-17 20:41:41.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:41.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:41.278 -07 000000623 INF: FPGA: Recv ZSGSRD 29611
17-03-17 20:41:41.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:41.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:41.288 -07 000000512 INF: FPGA: Recv ZSGSRD 29610
17-03-17 20:41:41.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:41.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:41.298 -07 000000623 INF: FPGA: Recv ZSGSRD 29613
17-03-17 20:41:41.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:41.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:41.308 -07 000000512 INF: FPGA: Recv ZSGSRD 29612
17-03-17 20:41:41.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:41.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:41.318 -07 000000458 INF: FPGA: Recv ZSGSRD 29609
17-03-17 20:41:41.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:41.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:41.328 -07 000000551 INF: FPGA: Recv ZPIEZORD 25312
17-03-17 20:41:41.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:41:41.338 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.4 V.
17-03-17 20:41:41.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29612 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29612 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29608 (-129.8 uncal um), Max = 29619 (-129.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:41:41.338 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29612, posNoise = 7, negNoise = 4
17-03-17 20:41:41.338 -07 000000610 INF: Z Motor: After move to -0.130552, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:41.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:41:41.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:41.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:41.338 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:41.338 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:41.338 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:41:41.338 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:41.338 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:41:41.338 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:41:41.338 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:41:41.338 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:41:41.338 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:41:41.338 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:41:41.338 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:41:41.338 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:41:41.348 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:41:41.348 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:41:41.348 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:41:41.348 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:41:41.348 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:41:41.348 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:41:41.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 28696 150\n [Camera]
17-03-17 20:41:41.558 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:41:41.808 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:41:41.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:41:41.968 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:41:41.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:41:41.978 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:41.978 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:41:41.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:41:41.978 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:41.978 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:41.978 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460549448, 0x0, 391868352) start.
17-03-17 20:41:41.978 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:41.978 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:41:42.168 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28696 803
17-03-17 20:41:42.318 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:41:42.358 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460549448, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 20:41:42.358 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:41:42.358 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:42.358 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:41:42.358 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:41:42.358 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:42.358 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:42.358 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:41:42.358 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:41:42.368 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:41:42.518 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:41:42.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:41:42.518 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:42.628 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:41:42.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:41:42.628 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:42.628 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:42.628 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:41:42.628 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:42.638 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1439400208, 0x0, 418435064) start.
17-03-17 20:41:42.708 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:41:42.708 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:41:42.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 28696 150' command took 2 ms to send, 1344 ms to get response, and 1353 ms overall
17-03-17 20:41:42.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:41:42.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.13055712195296. ------
17-03-17 20:41:42.708 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:42.708 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13707 mm
17-03-17 20:41:42.718 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:41:42.718 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:42.718 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:41:42.718 -07 000000431 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 20:41:42.718 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 29943, sync = True, waitForSettling = False)
17-03-17 20:41:42.718 -07 000000458 INF: Z Motor: Moving to -0.137070 mm, started at -0.130557 mm, distance = -6.51 um
17-03-17 20:41:42.728 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:42.728 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:42.728 -07 000000627 INF: FPGA: Recv YRDPOS 141369
17-03-17 20:41:42.738 -07 000000458 INF: FPGA: Xmit ZDACW 29943\n [Z Motor]
17-03-17 20:41:42.738 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:41:42.738 -07 000000431 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:42.738 -07 000000431 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:41:42.738 -07 000000431 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:41:42.738 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:41:42.748 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:41:42.748 -07 000000458 INF: FPGA: 'ZDACW 29943' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:41:42.758 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:41:42.768 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:42.768 -07 000000512 INF: FPGA: Recv ZDACR 29943
17-03-17 20:41:42.778 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:41:42.778 -07 000000458 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 20:41:42.808 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.996267,
17-03-17 20:41:43.028 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:41:43.028 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:41:43.028 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:43.028 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1439400208, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:41:43.028 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:41:43.028 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:43.038 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:43.038 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 20:41:43.038 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:43.048 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 20:41:43.048 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:41:43.048 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 295 ms to get response, and 324 ms overall
17-03-17 20:41:43.128 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 20:41:43.128 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:41:43.168 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:43.168 -07 000000551 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:41:43.178 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:41:43.178 -07 000000431 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:43.178 -07 000000431 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:41:43.178 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.123 mm/sec
17-03-17 20:41:44.128 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:44.128 -07 000000478 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:41:44.138 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:44.138 -07 000000431 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:44.158 -07 000000431 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:41:44.158 -07 000000431 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:41:44.158 -07 000000431 INF: Y Motor: Moved to 69.8638 after 1439 ms (table move)
17-03-17 20:41:44.158 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137070 mm (DAC = 29943)
17-03-17 20:41:44.158 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:44.158 -07 000000459 INF: FPGA: Recv ZSGSRD 30629
17-03-17 20:41:44.168 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:41:44.168 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:44.168 -07 000000431 INF: FPGA: Recv ZSGSRD 30626
17-03-17 20:41:44.178 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:44.178 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:44.178 -07 000000551 INF: FPGA: Recv ZSGSRD 30628
17-03-17 20:41:44.188 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:44.188 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:44.188 -07 000000478 INF: FPGA: Recv ZSGSRD 30626
17-03-17 20:41:44.198 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:44.208 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:44.208 -07 000000478 INF: FPGA: Recv ZSGSRD 30637
17-03-17 20:41:44.218 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:41:44.218 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:44.218 -07 000000459 INF: FPGA: Recv ZSGSRD 30622
17-03-17 20:41:44.228 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:44.228 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:44.228 -07 000000459 INF: FPGA: Recv ZSGSRD 30617
17-03-17 20:41:44.238 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:44.238 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:44.238 -07 000000478 INF: FPGA: Recv ZSGSRD 30627
17-03-17 20:41:44.248 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:44.248 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:44.248 -07 000000551 INF: FPGA: Recv ZSGSRD 30623
17-03-17 20:41:44.258 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:44.258 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:44.258 -07 000000431 INF: FPGA: Recv ZSGSRD 30636
17-03-17 20:41:44.268 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:44.268 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:44.268 -07 000000478 INF: FPGA: Recv ZPIEZORD 26646
17-03-17 20:41:44.278 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:44.278 -07 000000501 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.569 V. Piezo Error = -8.8 V.
17-03-17 20:41:44.278 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30627 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30626 (-136.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30617 (-136.2 uncal um), Max = 30637 (-136.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:41:44.278 -07 000000501 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30627, posNoise = 10, negNoise = 10
17-03-17 20:41:44.278 -07 000000501 INF: Z Motor: After move to -0.137070, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:44.278 -07 000000501 INF: Z Motor: Settle wait time = 1442 ms, measure time = 115 ms (allowed 150 ms), total time = 1557 ms
17-03-17 20:41:44.278 -07 000000501 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-17 20:41:44.318 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 20:41:44.318 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:41:44.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:44.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:44.318 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:44.318 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:44.318 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:41:44.318 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:44.318 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:41:44.318 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:41:44.328 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:41:44.328 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:41:44.338 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:41:44.338 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:41:44.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:41:44.388 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:41:44.588 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:41:44.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:41:44.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:41:44.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:41:44.628 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:41:44.628 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 20:41:44.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 20:41:44.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 20:41:44.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:44.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:41:44.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 20:41:44.728 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:44.728 -07 000000478 INF: Autofocus start
17-03-17 20:41:44.728 -07 000000478 INF: MeasureProfile start
17-03-17 20:41:44.728 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:44.738 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:41:44.738 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:41:44.748 -07 000000478 INF: MeasureProfile done
17-03-17 20:41:44.748 -07 000000478 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:41:44.748 -07 000000478 INF: Autofocus finished
17-03-17 20:41:44.938 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:41:44.938 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:41:44.938 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.137077697276848. ----------
17-03-17 20:41:44.938 -07 000000610 INF: Cycle	41	Tile	13	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:41:44.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28450, sync = True, waitForSettling = True)
17-03-17 20:41:44.948 -07 000000610 INF: Z Motor: Moving to -0.130236 mm, started at -0.137078 mm, distance = 6.84 um
17-03-17 20:41:44.948 -07 000000610 INF: FPGA: Xmit ZDACW 28450\n [Z Motor]
17-03-17 20:41:44.948 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:41:44.958 -07 000000610 INF: FPGA: 'ZDACW 28450' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:44.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:44.958 -07 000000501 INF: FPGA: Recv ZDACR 28450
17-03-17 20:41:44.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:44.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:41:45.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:45.118 -07 000000551 INF: FPGA: Recv ZSGSRD 29561
17-03-17 20:41:45.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:45.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:45.128 -07 000000501 INF: FPGA: Recv ZSGSRD 29560
17-03-17 20:41:45.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:45.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:45.138 -07 000000551 INF: FPGA: Recv ZSGSRD 29566
17-03-17 20:41:45.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:45.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:45.148 -07 000000501 INF: FPGA: Recv ZSGSRD 29560
17-03-17 20:41:45.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:45.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:45.158 -07 000000551 INF: FPGA: Recv ZSGSRD 29560
17-03-17 20:41:45.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:45.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:45.168 -07 000000501 INF: FPGA: Recv ZSGSRD 29569
17-03-17 20:41:45.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:45.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:45.178 -07 000000431 INF: FPGA: Recv ZSGSRD 29562
17-03-17 20:41:45.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:45.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:45.188 -07 000000501 INF: FPGA: Recv ZSGSRD 29561
17-03-17 20:41:45.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:45.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:45.198 -07 000000431 INF: FPGA: Recv ZSGSRD 29560
17-03-17 20:41:45.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:45.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:45.208 -07 000000551 INF: FPGA: Recv ZSGSRD 29563
17-03-17 20:41:45.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:45.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:45.218 -07 000000478 INF: FPGA: Recv ZPIEZORD 25281
17-03-17 20:41:45.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:45.228 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.341 V. Piezo Error = -9.4 V.
17-03-17 20:41:45.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29562 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29561 (-129.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29560 (-129.4 uncal um), Max = 29569 (-129.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 20:41:45.228 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29562, posNoise = 7, negNoise = 2
17-03-17 20:41:45.228 -07 000000610 INF: Z Motor: After move to -0.130236, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:45.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:41:45.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:45.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:45.228 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:45.228 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:45.228 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:41:45.228 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:41:45.228 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:41:45.228 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:45.228 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:41:45.228 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:41:45.228 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:41:45.228 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:41:45.238 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:41:45.238 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:41:45.238 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:41:45.238 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:41:45.248 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:41:45.248 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:41:45.248 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:41:45.248 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:41:45.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 28627 150\n [Camera]
17-03-17 20:41:45.448 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:41:45.868 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:41:45.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:41:45.868 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:45.868 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:41:45.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:41:45.868 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:45.878 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:45.878 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:41:45.878 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:45.878 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:41:46.058 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28627 803
17-03-17 20:41:46.208 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:41:46.248 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:41:46.248 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:41:46.248 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:46.258 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:41:46.258 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:41:46.258 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:46.258 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:46.258 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:41:46.258 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:46.268 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:41:46.408 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:41:46.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:41:46.408 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:46.518 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:41:46.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:41:46.518 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:46.528 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:46.528 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:41:46.528 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:46.528 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:41:46.608 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1349
17-03-17 20:41:46.608 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:41:46.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 28627 150' command took 2 ms to send, 1352 ms to get response, and 1356 ms overall
17-03-17 20:41:46.608 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:41:46.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.130235911345872. ------
17-03-17 20:41:46.608 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:46.608 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13655 mm
17-03-17 20:41:46.608 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:41:46.618 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:46.618 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:41:46.618 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:41:46.618 -07 000000431 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 20:41:46.618 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29830, sync = True, waitForSettling = False)
17-03-17 20:41:46.618 -07 000000382 INF: Z Motor: Moving to -0.136553 mm, started at -0.130236 mm, distance = -6.32 um
17-03-17 20:41:46.618 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:41:46.628 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:46.628 -07 000000478 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:41:46.638 -07 000000382 INF: FPGA: Xmit ZDACW 29830\n [Z Motor]
17-03-17 20:41:46.638 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:41:46.638 -07 000000431 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:46.638 -07 000000431 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:41:46.638 -07 000000431 INF: Y Motor: Moving 1342 steps-18
17-03-17 20:41:46.638 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:41:46.648 -07 000000382 INF: FPGA: 'ZDACW 29830' command took 2 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:41:46.648 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:41:46.658 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:46.658 -07 000000623 INF: FPGA: Recv ZDACR 29830
17-03-17 20:41:46.668 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:41:46.668 -07 000000382 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 20:41:46.808 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:41:46.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:41:46.818 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:41:46.818 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 20:41:46.908 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:41:46.908 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:41:46.908 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:46.908 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:46.908 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:41:46.908 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:41:46.908 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:46.918 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:46.918 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 503 ms.
17-03-17 20:41:46.918 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:41:47.018 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 20:41:47.018 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 20:41:47.058 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:47.058 -07 000000429 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:41:47.068 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:41:47.068 -07 000000431 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:47.068 -07 000000431 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:41:47.068 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.839 mm, average velocity = 2.179 mm/sec
17-03-17 20:41:48.018 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:48.018 -07 000000501 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:41:48.028 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:48.028 -07 000000431 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:48.048 -07 000000431 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:41:48.048 -07 000000431 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:41:48.048 -07 000000431 INF: Y Motor: Moved to 70.6890 after 1430 ms (table move)
17-03-17 20:41:48.048 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136553 mm (DAC = 29830)
17-03-17 20:41:48.058 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:48.058 -07 000000512 INF: FPGA: Recv ZSGSRD 30547
17-03-17 20:41:48.068 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:41:48.068 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:48.068 -07 000000501 INF: FPGA: Recv ZSGSRD 30546
17-03-17 20:41:48.078 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:48.078 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:48.078 -07 000000551 INF: FPGA: Recv ZSGSRD 30548
17-03-17 20:41:48.088 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:48.088 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:48.088 -07 000000551 INF: FPGA: Recv ZSGSRD 30546
17-03-17 20:41:48.098 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:48.098 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:48.098 -07 000000501 INF: FPGA: Recv ZSGSRD 30553
17-03-17 20:41:48.108 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:48.108 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:48.108 -07 000000501 INF: FPGA: Recv ZSGSRD 30549
17-03-17 20:41:48.118 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:48.118 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:48.118 -07 000000501 INF: FPGA: Recv ZSGSRD 30548
17-03-17 20:41:48.128 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:48.128 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:48.128 -07 000000501 INF: FPGA: Recv ZSGSRD 30542
17-03-17 20:41:48.138 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:48.138 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:48.138 -07 000000551 INF: FPGA: Recv ZSGSRD 30543
17-03-17 20:41:48.148 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:48.148 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:48.148 -07 000000551 INF: FPGA: Recv ZSGSRD 30549
17-03-17 20:41:48.158 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:48.158 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:48.158 -07 000000551 INF: FPGA: Recv ZPIEZORD 26544
17-03-17 20:41:48.168 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:48.168 -07 000000459 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.552 V. Piezo Error = -8.8 V.
17-03-17 20:41:48.168 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30547 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30548 (-135.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30542 (-135.7 uncal um), Max = 30553 (-135.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:41:48.168 -07 000000459 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30547, posNoise = 6, negNoise = 5
17-03-17 20:41:48.168 -07 000000459 INF: Z Motor: After move to -0.136553, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:48.168 -07 000000459 INF: Z Motor: Settle wait time = 1433 ms, measure time = 114 ms (allowed 150 ms), total time = 1547 ms
17-03-17 20:41:48.168 -07 000000459 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-17 20:41:48.208 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 20:41:48.208 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:41:48.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:48.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:48.208 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:48.208 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:48.208 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:41:48.208 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:48.208 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:41:48.208 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:41:48.218 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:41:48.218 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:41:48.228 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:41:48.228 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:41:48.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:41:48.278 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:41:48.368 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.014009,
17-03-17 20:41:48.468 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:41:48.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:41:48.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:41:48.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1477021456, 0x0, 559484976) start.
17-03-17 20:41:48.508 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:41:48.518 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 20:41:48.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 20:41:48.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1477021456, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 20:41:48.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:48.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:41:48.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 20:41:48.618 -07 000000551 INF: Autofocus start
17-03-17 20:41:48.618 -07 000000551 INF: MeasureProfile start
17-03-17 20:41:48.618 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:48.618 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:48.628 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:41:48.628 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:41:48.628 -07 000000551 INF: MeasureProfile done
17-03-17 20:41:48.628 -07 000000551 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:41:48.628 -07 000000551 INF: Autofocus finished
17-03-17 20:41:48.828 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:41:48.828 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:41:48.828 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136563760305507. ----------
17-03-17 20:41:48.828 -07 000000610 INF: Cycle	41	Tile	14	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:41:48.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28337, sync = True, waitForSettling = True)
17-03-17 20:41:48.838 -07 000000610 INF: Z Motor: Moving to -0.129718 mm, started at -0.136564 mm, distance = 6.85 um
17-03-17 20:41:48.838 -07 000000610 INF: FPGA: Xmit ZDACW 28337\n [Z Motor]
17-03-17 20:41:48.838 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:41:48.848 -07 000000610 INF: FPGA: 'ZDACW 28337' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:48.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:48.848 -07 000000551 INF: FPGA: Recv ZDACR 28337
17-03-17 20:41:48.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:48.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:41:49.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:49.008 -07 000000512 INF: FPGA: Recv ZSGSRD 29480
17-03-17 20:41:49.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:49.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:49.018 -07 000000459 INF: FPGA: Recv ZSGSRD 29488
17-03-17 20:41:49.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:49.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:49.028 -07 000000501 INF: FPGA: Recv ZSGSRD 29484
17-03-17 20:41:49.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:49.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:49.038 -07 000000459 INF: FPGA: Recv ZSGSRD 29476
17-03-17 20:41:49.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:49.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:49.048 -07 000000551 INF: FPGA: Recv ZSGSRD 29486
17-03-17 20:41:49.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:49.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:49.058 -07 000000512 INF: FPGA: Recv ZSGSRD 29481
17-03-17 20:41:49.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:49.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:49.068 -07 000000501 INF: FPGA: Recv ZSGSRD 29483
17-03-17 20:41:49.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:49.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:49.078 -07 000000512 INF: FPGA: Recv ZSGSRD 29478
17-03-17 20:41:49.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:41:49.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:49.088 -07 000000458 INF: FPGA: Recv ZSGSRD 29477
17-03-17 20:41:49.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:49.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:49.098 -07 000000476 INF: FPGA: Recv ZSGSRD 29487
17-03-17 20:41:49.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:49.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:49.108 -07 000000501 INF: FPGA: Recv ZPIEZORD 25153
17-03-17 20:41:49.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:49.118 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.324 V. Piezo Error = -9.5 V.
17-03-17 20:41:49.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29482 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29482 (-128.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29476 (-128.9 uncal um), Max = 29488 (-129.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:41:49.118 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29482, posNoise = 6, negNoise = 6
17-03-17 20:41:49.118 -07 000000610 INF: Z Motor: After move to -0.129718, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:49.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:41:49.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:49.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:49.118 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:49.118 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:49.118 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:41:49.118 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:49.118 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:41:49.118 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:41:49.118 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:41:49.118 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:41:49.118 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:41:49.118 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:41:49.118 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:41:49.118 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:41:49.128 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:41:49.128 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:41:49.128 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:41:49.128 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:41:49.138 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:41:49.138 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:41:49.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 28514 150\n [Camera]
17-03-17 20:41:49.338 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:41:49.758 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:41:49.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:41:49.758 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:49.758 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:41:49.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:41:49.758 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:49.758 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:49.768 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:41:49.768 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:49.768 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:41:49.948 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28514 803
17-03-17 20:41:50.098 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:41:50.138 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 20:41:50.138 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:41:50.138 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:50.138 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:41:50.138 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:41:50.138 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:50.148 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:41:50.148 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:41:50.148 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:41:50.148 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:41:50.298 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:41:50.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:41:50.298 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:50.408 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:41:50.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:41:50.408 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:50.418 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:50.418 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:41:50.418 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:50.418 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:41:50.488 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:41:50.488 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:41:50.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 28514 150' command took 2 ms to send, 1349 ms to get response, and 1355 ms overall
17-03-17 20:41:50.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:41:50.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129721974374532. ------
17-03-17 20:41:50.498 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:50.498 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13621 mm
17-03-17 20:41:50.498 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:41:50.498 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:41:50.498 -07 000000501 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 20:41:50.498 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 29754, sync = True, waitForSettling = False)
17-03-17 20:41:50.498 -07 000000415 INF: Z Motor: Moving to -0.136205 mm, started at -0.129722 mm, distance = -6.48 um
17-03-17 20:41:50.498 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:50.508 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:41:50.508 -07 000000415 INF: FPGA: Xmit ZDACW 29754\n [Z Motor]
17-03-17 20:41:50.508 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:41:50.518 -07 000000415 INF: FPGA: 'ZDACW 29754' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:41:50.518 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:50.518 -07 000000458 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:41:50.528 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:41:50.528 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:41:50.528 -07 000000501 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:50.528 -07 000000501 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:41:50.528 -07 000000501 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:41:50.538 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:50.538 -07 000000627 INF: FPGA: Recv ZDACR 29754
17-03-17 20:41:50.548 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:41:50.548 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:41:50.548 -07 000000415 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 20:41:50.728 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:41:50.728 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:41:50.808 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:41:50.808 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:41:50.808 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:50.808 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 20:41:50.808 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:41:50.808 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:50.818 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:50.818 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 20:41:50.818 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:50.828 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:41:50.918 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 20:41:50.918 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:41:50.958 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:50.958 -07 000000429 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:41:50.968 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:41:50.968 -07 000000501 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:50.968 -07 000000501 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:41:50.968 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 20:41:51.808 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:41:51.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:41:51.918 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:51.918 -07 000000431 INF: FPGA: Recv YRDPOS 146472
17-03-17 20:41:51.928 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:51.928 -07 000000501 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:51.948 -07 000000501 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:41:51.948 -07 000000501 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:41:51.948 -07 000000501 INF: Y Motor: Moved to 71.5195 after 1446 ms (table move)
17-03-17 20:41:51.948 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136205 mm (DAC = 29754)
17-03-17 20:41:51.948 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:51.948 -07 000000512 INF: FPGA: Recv ZSGSRD 30500
17-03-17 20:41:51.958 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:41:51.958 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:51.958 -07 000000512 INF: FPGA: Recv ZSGSRD 30493
17-03-17 20:41:51.968 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:51.968 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:51.968 -07 000000501 INF: FPGA: Recv ZSGSRD 30491
17-03-17 20:41:51.978 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:51.978 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:51.978 -07 000000501 INF: FPGA: Recv ZSGSRD 30487
17-03-17 20:41:51.988 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:51.988 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:51.988 -07 000000623 INF: FPGA: Recv ZSGSRD 30496
17-03-17 20:41:51.998 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:51.998 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:51.998 -07 000000623 INF: FPGA: Recv ZSGSRD 30498
17-03-17 20:41:52.008 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:52.008 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:52.008 -07 000000501 INF: FPGA: Recv ZSGSRD 30501
17-03-17 20:41:52.018 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:52.018 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:52.018 -07 000000623 INF: FPGA: Recv ZSGSRD 30491
17-03-17 20:41:52.028 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:52.028 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:52.028 -07 000000501 INF: FPGA: Recv ZSGSRD 30486
17-03-17 20:41:52.038 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:52.038 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:52.038 -07 000000623 INF: FPGA: Recv ZSGSRD 30487
17-03-17 20:41:52.048 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:52.048 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:52.048 -07 000000623 INF: FPGA: Recv ZPIEZORD 26523
17-03-17 20:41:52.058 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:52.058 -07 000000541 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.540 V. Piezo Error = -8.7 V.
17-03-17 20:41:52.058 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30493 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30492 (-135.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30486 (-135.4 uncal um), Max = 30501 (-135.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:41:52.058 -07 000000541 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30493, posNoise = 8, negNoise = 7
17-03-17 20:41:52.058 -07 000000541 INF: Z Motor: After move to -0.136205, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:52.058 -07 000000541 INF: Z Motor: Settle wait time = 1449 ms, measure time = 104 ms (allowed 150 ms), total time = 1553 ms
17-03-17 20:41:52.058 -07 000000541 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:41:52.108 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 20:41:52.108 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:41:52.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:52.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:52.108 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:52.108 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:52.108 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:41:52.108 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:52.118 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:41:52.118 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:41:52.118 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:41:52.118 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:41:52.128 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:41:52.128 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:41:52.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:41:52.178 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:41:52.378 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:41:52.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:41:52.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:41:52.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:41:52.418 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:41:52.418 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 20:41:52.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 275 ms to get response, and 286 ms overall
17-03-17 20:41:52.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:41:52.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:52.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:41:52.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:41:52.518 -07 000000541 INF: Autofocus start
17-03-17 20:41:52.518 -07 000000541 INF: MeasureProfile start
17-03-17 20:41:52.518 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:52.518 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:52.528 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:41:52.528 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:41:52.528 -07 000000541 INF: MeasureProfile done
17-03-17 20:41:52.528 -07 000000541 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:41:52.528 -07 000000541 INF: Autofocus finished
17-03-17 20:41:52.728 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:41:52.728 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:41:52.728 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.136216852849852. ----------
17-03-17 20:41:52.728 -07 000000610 INF: Cycle	41	Tile	15	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:41:52.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28249, sync = True, waitForSettling = True)
17-03-17 20:41:52.738 -07 000000610 INF: Z Motor: Moving to -0.129316 mm, started at -0.136217 mm, distance = 6.90 um
17-03-17 20:41:52.738 -07 000000610 INF: FPGA: Xmit ZDACW 28249\n [Z Motor]
17-03-17 20:41:52.738 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:41:52.748 -07 000000610 INF: FPGA: 'ZDACW 28249' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:52.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:52.748 -07 000000501 INF: FPGA: Recv ZDACR 28249
17-03-17 20:41:52.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:52.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:41:52.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:52.908 -07 000000541 INF: FPGA: Recv ZSGSRD 29416
17-03-17 20:41:52.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:52.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:52.918 -07 000000623 INF: FPGA: Recv ZSGSRD 29419
17-03-17 20:41:52.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:52.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:52.928 -07 000000541 INF: FPGA: Recv ZSGSRD 29421
17-03-17 20:41:52.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:52.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:52.938 -07 000000512 INF: FPGA: Recv ZSGSRD 29412
17-03-17 20:41:52.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:52.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:52.948 -07 000000501 INF: FPGA: Recv ZSGSRD 29420
17-03-17 20:41:52.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:52.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:52.958 -07 000000623 INF: FPGA: Recv ZSGSRD 29416
17-03-17 20:41:52.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:52.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:52.968 -07 000000541 INF: FPGA: Recv ZSGSRD 29426
17-03-17 20:41:52.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:41:52.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:52.978 -07 000000623 INF: FPGA: Recv ZSGSRD 29422
17-03-17 20:41:52.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:52.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:52.988 -07 000000541 INF: FPGA: Recv ZSGSRD 29417
17-03-17 20:41:52.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:52.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:52.998 -07 000000623 INF: FPGA: Recv ZSGSRD 29418
17-03-17 20:41:53.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:53.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:53.008 -07 000000512 INF: FPGA: Recv ZPIEZORD 25110
17-03-17 20:41:53.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:53.018 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.311 V. Piezo Error = -9.5 V.
17-03-17 20:41:53.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29419 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29418 (-128.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29412 (-128.5 uncal um), Max = 29426 (-128.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:41:53.018 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29419, posNoise = 7, negNoise = 7
17-03-17 20:41:53.018 -07 000000610 INF: Z Motor: After move to -0.129316, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:53.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:41:53.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:53.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:53.018 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:53.018 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:53.018 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:41:53.018 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:53.018 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:41:53.018 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:41:53.018 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:41:53.018 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:41:53.018 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:41:53.018 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:41:53.018 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:41:53.018 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:41:53.028 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:41:53.028 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:41:53.028 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:41:53.028 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:41:53.028 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:41:53.028 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:41:53.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 28426 150\n [Camera]
17-03-17 20:41:53.238 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:41:53.658 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:41:53.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:41:53.658 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:53.658 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:41:53.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:41:53.658 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:53.658 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:53.658 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:41:53.658 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:53.658 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:41:53.728 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.989471,
17-03-17 20:41:53.848 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28426 803
17-03-17 20:41:53.998 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:41:54.038 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 20:41:54.038 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:41:54.038 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:54.048 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:41:54.048 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:41:54.048 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:54.048 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:41:54.048 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:41:54.058 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:41:54.068 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:41:54.198 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:41:54.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:41:54.198 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:54.308 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:41:54.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:41:54.308 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:54.318 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:54.318 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:54.318 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:41:54.318 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:41:54.388 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:41:54.388 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:41:54.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 28426 150' command took 2 ms to send, 1346 ms to get response, and 1354 ms overall
17-03-17 20:41:54.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:41:54.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.129317249009601. ------
17-03-17 20:41:54.398 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13515 mm
17-03-17 20:41:54.398 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:41:54.398 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:54.398 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:54.398 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:41:54.398 -07 000000448 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 20:41:54.398 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29523, sync = True, waitForSettling = False)
17-03-17 20:41:54.398 -07 000000576 INF: Z Motor: Moving to -0.135148 mm, started at -0.129317 mm, distance = -5.83 um
17-03-17 20:41:54.408 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:41:54.408 -07 000000576 INF: FPGA: Xmit ZDACW 29523\n [Z Motor]
17-03-17 20:41:54.408 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:41:54.418 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:54.418 -07 000000576 INF: FPGA: 'ZDACW 29523' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:41:54.418 -07 000000512 INF: FPGA: Recv YRDPOS 146472
17-03-17 20:41:54.428 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:41:54.428 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:41:54.428 -07 000000448 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:54.428 -07 000000448 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:41:54.428 -07 000000448 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:41:54.438 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:54.438 -07 000000627 INF: FPGA: Recv ZDACR 29523
17-03-17 20:41:54.448 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:41:54.448 -07 000000576 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:41:54.448 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:41:54.628 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:41:54.628 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:41:54.688 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:41:54.688 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:41:54.688 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:54.688 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:41:54.688 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:41:54.688 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:54.698 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:54.698 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:54.698 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 497 ms.
17-03-17 20:41:54.698 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:41:54.818 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 20:41:54.818 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:41:54.858 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:54.858 -07 000000576 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:41:54.868 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:41:54.868 -07 000000448 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:54.868 -07 000000448 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:41:54.868 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.843 mm, average velocity = 2.134 mm/sec
17-03-17 20:41:55.818 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:55.818 -07 000000431 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:41:55.828 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:55.828 -07 000000448 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:55.848 -07 000000448 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:41:55.848 -07 000000448 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:41:55.848 -07 000000448 INF: Y Motor: Moved to 72.3496 after 1446 ms (table move)
17-03-17 20:41:55.848 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135148 mm (DAC = 29523)
17-03-17 20:41:55.848 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:55.848 -07 000000431 INF: FPGA: Recv ZSGSRD 30328
17-03-17 20:41:55.858 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:41:55.858 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:55.858 -07 000000448 INF: FPGA: Recv ZSGSRD 30330
17-03-17 20:41:55.868 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:55.868 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:55.868 -07 000000448 INF: FPGA: Recv ZSGSRD 30330
17-03-17 20:41:55.878 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:55.878 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:55.878 -07 000000431 INF: FPGA: Recv ZSGSRD 30331
17-03-17 20:41:55.888 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:55.888 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:55.888 -07 000000448 INF: FPGA: Recv ZSGSRD 30329
17-03-17 20:41:55.898 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:55.898 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:55.898 -07 000000431 INF: FPGA: Recv ZSGSRD 30329
17-03-17 20:41:55.908 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:55.908 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:55.908 -07 000000431 INF: FPGA: Recv ZSGSRD 30330
17-03-17 20:41:55.918 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:55.918 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:55.918 -07 000000431 INF: FPGA: Recv ZSGSRD 30327
17-03-17 20:41:55.928 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:55.928 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:55.928 -07 000000431 INF: FPGA: Recv ZSGSRD 30322
17-03-17 20:41:55.938 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:55.938 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:55.938 -07 000000431 INF: FPGA: Recv ZSGSRD 30332
17-03-17 20:41:55.948 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:55.948 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:55.948 -07 000000431 INF: FPGA: Recv ZPIEZORD 26359
17-03-17 20:41:55.958 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:41:55.958 -07 000000433 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.505 V. Piezo Error = -8.7 V.
17-03-17 20:41:55.958 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30329 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30330 (-134.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30322 (-134.3 uncal um), Max = 30332 (-134.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:41:55.958 -07 000000433 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30329, posNoise = 3, negNoise = 7
17-03-17 20:41:55.958 -07 000000433 INF: Z Motor: After move to -0.135148, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:55.958 -07 000000433 INF: Z Motor: Settle wait time = 1448 ms, measure time = 105 ms (allowed 150 ms), total time = 1553 ms
17-03-17 20:41:55.958 -07 000000433 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:41:56.008 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 20:41:56.008 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:41:56.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:56.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:56.008 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:56.008 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:56.008 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:41:56.018 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:56.018 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:41:56.018 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:41:56.018 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:41:56.018 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:41:56.028 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:41:56.028 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:41:56.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:41:56.078 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:41:56.278 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:41:56.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:41:56.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:41:56.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1477021456, 0x0, 559484976) start.
17-03-17 20:41:56.318 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:41:56.318 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 20:41:56.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 20:41:56.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1477021456, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:41:56.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:56.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:41:56.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:41:56.418 -07 000000431 INF: Autofocus start
17-03-17 20:41:56.418 -07 000000431 INF: MeasureProfile start
17-03-17 20:41:56.418 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:56.418 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:56.428 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:41:56.428 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:41:56.428 -07 000000431 INF: MeasureProfile done
17-03-17 20:41:56.428 -07 000000431 INF: X=80  Z correction [um]=0.3608828
17-03-17 20:41:56.428 -07 000000431 INF: Autofocus finished
17-03-17 20:41:56.628 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:41:56.628 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 20:41:56.628 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135163282058603. ----------
17-03-17 20:41:56.628 -07 000000610 INF: Cycle	41	Tile	16	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:41:56.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28115, sync = True, waitForSettling = True)
17-03-17 20:41:56.638 -07 000000610 INF: Z Motor: Moving to -0.128702 mm, started at -0.135163 mm, distance = 6.46 um
17-03-17 20:41:56.638 -07 000000610 INF: FPGA: Xmit ZDACW 28115\n [Z Motor]
17-03-17 20:41:56.638 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:41:56.648 -07 000000610 INF: FPGA: 'ZDACW 28115' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:41:56.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:56.648 -07 000000431 INF: FPGA: Recv ZDACR 28115
17-03-17 20:41:56.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:56.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:41:56.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:56.808 -07 000000551 INF: FPGA: Recv ZSGSRD 29328
17-03-17 20:41:56.808 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:41:56.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:41:56.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:56.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:56.818 -07 000000458 INF: FPGA: Recv ZSGSRD 29329
17-03-17 20:41:56.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:56.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:56.828 -07 000000551 INF: FPGA: Recv ZSGSRD 29321
17-03-17 20:41:56.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:56.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:56.838 -07 000000458 INF: FPGA: Recv ZSGSRD 29321
17-03-17 20:41:56.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:56.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:56.848 -07 000000551 INF: FPGA: Recv ZSGSRD 29328
17-03-17 20:41:56.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:56.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:56.858 -07 000000458 INF: FPGA: Recv ZSGSRD 29322
17-03-17 20:41:56.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:56.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:56.868 -07 000000551 INF: FPGA: Recv ZSGSRD 29315
17-03-17 20:41:56.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:56.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:56.878 -07 000000458 INF: FPGA: Recv ZSGSRD 29321
17-03-17 20:41:56.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:56.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:56.888 -07 000000415 INF: FPGA: Recv ZSGSRD 29323
17-03-17 20:41:56.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:56.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:41:56.898 -07 000000541 INF: FPGA: Recv ZSGSRD 29326
17-03-17 20:41:56.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:56.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:41:56.908 -07 000000541 INF: FPGA: Recv ZPIEZORD 25001
17-03-17 20:41:56.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:41:56.918 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.290 V. Piezo Error = -9.5 V.
17-03-17 20:41:56.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29323 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29322 (-127.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29315 (-127.9 uncal um), Max = 29329 (-128.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:41:56.918 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29323, posNoise = 6, negNoise = 8
17-03-17 20:41:56.918 -07 000000610 INF: Z Motor: After move to -0.128702, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:41:56.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:41:56.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:41:56.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:41:56.918 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:41:56.918 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:41:56.918 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:41:56.918 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:41:56.918 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:41:56.918 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:41:56.918 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:41:56.918 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:41:56.918 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:41:56.918 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:41:56.928 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:41:56.928 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:41:56.928 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:41:56.928 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:41:56.928 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:41:56.928 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:41:56.928 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:41:56.938 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:41:56.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 28291 150\n [Camera]
17-03-17 20:41:57.138 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:41:57.558 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:41:57.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:41:57.558 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:57.558 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:41:57.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:41:57.558 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:57.558 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:57.558 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:41:57.568 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:57.568 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:41:57.748 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28291 804
17-03-17 20:41:57.898 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:41:57.948 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:41:57.948 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:41:57.948 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:57.948 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:57.948 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:41:57.948 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:41:57.958 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:57.958 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:41:57.958 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:57.958 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:41:58.098 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:41:58.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:41:58.098 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:41:58.208 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:41:58.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:41:58.208 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:41:58.218 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:41:58.218 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:41:58.218 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:41:58.218 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:41:58.288 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:41:58.288 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:41:58.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 28291 150' command took 4 ms to send, 1347 ms to get response, and 1355 ms overall
17-03-17 20:41:58.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:41:58.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128700524643992. ------
17-03-17 20:41:58.298 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13524 mm
17-03-17 20:41:58.298 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:41:58.298 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:41:58.298 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29542, sync = True, waitForSettling = False)
17-03-17 20:41:58.298 -07 000000551 INF: Z Motor: Moving to -0.135235 mm, started at -0.128701 mm, distance = -6.53 um
17-03-17 20:41:58.298 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:41:58.298 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:41:58.298 -07 000000512 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 20:41:58.308 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:41:58.308 -07 000000551 INF: FPGA: Xmit ZDACW 29542\n [Z Motor]
17-03-17 20:41:58.308 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:41:58.318 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:58.318 -07 000000551 INF: FPGA: 'ZDACW 29542' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:41:58.318 -07 000000431 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:41:58.328 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:41:58.328 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:41:58.328 -07 000000512 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:58.328 -07 000000512 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:41:58.328 -07 000000512 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:41:58.338 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:41:58.338 -07 000000429 INF: FPGA: Recv ZDACR 29542
17-03-17 20:41:58.348 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:41:58.348 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:41:58.348 -07 000000551 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:41:58.528 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:41:58.528 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:41:58.598 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:41:58.598 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:41:58.598 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:58.598 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:41:58.598 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:41:58.598 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:41:58.598 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:41:58.598 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:41:58.608 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 503 ms.
17-03-17 20:41:58.608 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:41:58.718 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 20:41:58.718 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 20:41:58.758 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:41:59.738 -07 000000433 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:41:59.738 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 970 ms to get response, and 976 ms overall
17-03-17 20:41:59.738 -07 000000512 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:41:59.738 -07 000000512 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 20:41:59.738 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.843 mm, average velocity = 2.156 mm/sec
17-03-17 20:42:00.048 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.037119,
17-03-17 20:42:00.688 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:42:00.688 -07 000000433 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:42:00.698 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:42:00.698 -07 000000512 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:42:00.718 -07 000000512 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:42:00.718 -07 000000512 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:42:00.718 -07 000000512 INF: Y Motor: Moved to 73.1763 after 2417 ms (table move)
17-03-17 20:42:00.718 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135235 mm (DAC = 29542)
17-03-17 20:42:00.718 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:00.728 -07 000000458 INF: FPGA: Recv ZSGSRD 30342
17-03-17 20:42:00.728 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:42:00.728 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:00.728 -07 000000433 INF: FPGA: Recv ZSGSRD 30347
17-03-17 20:42:00.738 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:00.738 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:00.738 -07 000000512 INF: FPGA: Recv ZSGSRD 30339
17-03-17 20:42:00.748 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:00.748 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:00.748 -07 000000433 INF: FPGA: Recv ZSGSRD 30341
17-03-17 20:42:00.758 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:00.758 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:00.758 -07 000000512 INF: FPGA: Recv ZSGSRD 30344
17-03-17 20:42:00.768 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:00.768 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:00.768 -07 000000627 INF: FPGA: Recv ZSGSRD 30341
17-03-17 20:42:00.778 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:00.778 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:00.778 -07 000000512 INF: FPGA: Recv ZSGSRD 30341
17-03-17 20:42:00.788 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:00.788 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:00.788 -07 000000433 INF: FPGA: Recv ZSGSRD 30338
17-03-17 20:42:00.798 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:00.798 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:00.798 -07 000000478 INF: FPGA: Recv ZSGSRD 30342
17-03-17 20:42:00.808 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:42:00.808 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:00.808 -07 000000627 INF: FPGA: Recv ZSGSRD 30342
17-03-17 20:42:00.818 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:00.818 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:42:00.818 -07 000000627 INF: FPGA: Recv ZPIEZORD 26334
17-03-17 20:42:00.828 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:00.828 -07 000000415 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.508 V. Piezo Error = -8.8 V.
17-03-17 20:42:00.828 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30342 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30342 (-134.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30338 (-134.4 uncal um), Max = 30347 (-134.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:42:00.828 -07 000000415 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30342, posNoise = 5, negNoise = 4
17-03-17 20:42:00.828 -07 000000415 INF: Z Motor: After move to -0.135235, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:42:00.828 -07 000000415 INF: Z Motor: Settle wait time = 2421 ms, measure time = 103 ms (allowed 150 ms), total time = 2524 ms
17-03-17 20:42:00.828 -07 000000415 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:42:00.878 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2576 ms
17-03-17 20:42:00.878 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:42:00.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:42:00.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:42:00.878 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:42:00.878 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:42:00.878 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:42:00.878 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:42:00.878 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:42:00.878 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:42:00.878 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:42:00.878 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:42:00.888 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:42:00.888 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:42:00.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:42:00.938 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:42:01.138 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:42:01.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:42:01.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:42:01.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:42:01.178 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:42:01.178 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 20:42:01.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 20:42:01.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:42:01.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:42:01.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:42:01.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:42:01.278 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:42:01.278 -07 000000512 INF: Autofocus start
17-03-17 20:42:01.278 -07 000000512 INF: MeasureProfile start
17-03-17 20:42:01.278 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:42:01.288 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:42:01.288 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:42:01.288 -07 000000512 INF: MeasureProfile done
17-03-17 20:42:01.288 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:42:01.288 -07 000000512 INF: Autofocus finished
17-03-17 20:42:01.488 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:42:01.488 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 20:42:01.498 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135246796816446. ----------
17-03-17 20:42:01.498 -07 000000610 INF: Cycle	41	Tile	17	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:42:01.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28050, sync = True, waitForSettling = True)
17-03-17 20:42:01.498 -07 000000610 INF: Z Motor: Moving to -0.128405 mm, started at -0.135247 mm, distance = 6.84 um
17-03-17 20:42:01.498 -07 000000610 INF: FPGA: Xmit ZDACW 28050\n [Z Motor]
17-03-17 20:42:01.498 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:42:01.508 -07 000000610 INF: FPGA: 'ZDACW 28050' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:42:01.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:42:01.508 -07 000000501 INF: FPGA: Recv ZDACR 28050
17-03-17 20:42:01.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:01.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:42:01.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:01.668 -07 000000627 INF: FPGA: Recv ZSGSRD 29281
17-03-17 20:42:01.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:42:01.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:01.678 -07 000000415 INF: FPGA: Recv ZSGSRD 29276
17-03-17 20:42:01.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:01.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:01.688 -07 000000476 INF: FPGA: Recv ZSGSRD 29274
17-03-17 20:42:01.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:01.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:01.698 -07 000000458 INF: FPGA: Recv ZSGSRD 29279
17-03-17 20:42:01.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:01.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:01.708 -07 000000627 INF: FPGA: Recv ZSGSRD 29275
17-03-17 20:42:01.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:01.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:01.718 -07 000000478 INF: FPGA: Recv ZSGSRD 29279
17-03-17 20:42:01.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:01.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:01.728 -07 000000501 INF: FPGA: Recv ZSGSRD 29273
17-03-17 20:42:01.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:01.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:01.738 -07 000000458 INF: FPGA: Recv ZSGSRD 29282
17-03-17 20:42:01.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:01.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:01.748 -07 000000501 INF: FPGA: Recv ZSGSRD 29277
17-03-17 20:42:01.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:01.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:01.758 -07 000000627 INF: FPGA: Recv ZSGSRD 29277
17-03-17 20:42:01.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:01.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:42:01.768 -07 000000512 INF: FPGA: Recv ZPIEZORD 24932
17-03-17 20:42:01.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:01.778 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.280 V. Piezo Error = -9.5 V.
17-03-17 20:42:01.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29277 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29277 (-127.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29273 (-127.6 uncal um), Max = 29282 (-127.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:42:01.778 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29277, posNoise = 5, negNoise = 4
17-03-17 20:42:01.778 -07 000000610 INF: Z Motor: After move to -0.128405, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:42:01.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:42:01.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:42:01.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:42:01.778 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:42:01.778 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:42:01.778 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:42:01.778 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:42:01.778 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:42:01.778 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:42:01.778 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:42:01.778 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:42:01.778 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:42:01.778 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:42:01.778 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:42:01.778 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:42:01.788 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:42:01.788 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:42:01.798 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 18 ms.
17-03-17 20:42:01.798 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:42:01.798 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms.
17-03-17 20:42:01.798 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 20:42:01.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 28226 150\n [Camera]
17-03-17 20:42:01.808 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:42:01.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:42:02.008 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:42:02.418 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:42:02.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:42:02.418 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:42:02.428 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:42:02.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:42:02.428 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:42:02.428 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:42:02.428 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:42:02.428 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:42:02.428 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:42:02.618 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28226 803
17-03-17 20:42:02.768 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:42:02.808 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:42:02.808 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:42:02.808 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:42:02.808 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:42:02.808 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:42:02.808 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:42:02.818 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:42:02.818 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:42:02.818 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:42:02.818 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:42:02.968 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:42:02.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:42:02.968 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:42:03.068 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:42:03.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:42:03.068 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:42:03.078 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:42:03.078 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:42:03.078 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:42:03.078 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:42:03.158 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:42:03.158 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:42:03.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 28226 150' command took 2 ms to send, 1344 ms to get response, and 1354 ms overall
17-03-17 20:42:03.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:42:03.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128405010885471. ------
17-03-17 20:42:03.158 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:42:03.158 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13480 mm
17-03-17 20:42:03.168 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:42:03.168 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:42:03.168 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:42:03.168 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:42:03.168 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:42:03.168 -07 000000433 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 20:42:03.168 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29447, sync = True, waitForSettling = False)
17-03-17 20:42:03.168 -07 000000576 INF: Z Motor: Moving to -0.134800 mm, started at -0.128405 mm, distance = -6.39 um
17-03-17 20:42:03.178 -07 000000576 INF: FPGA: Xmit ZDACW 29447\n [Z Motor]
17-03-17 20:42:03.178 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 20:42:03.188 -07 000000576 INF: FPGA: 'ZDACW 29447' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:42:03.188 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:42:03.188 -07 000000448 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:42:03.198 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:42:03.198 -07 000000433 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:42:03.198 -07 000000433 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:42:03.198 -07 000000433 INF: Y Motor: Moving 1354 steps-33
17-03-17 20:42:03.198 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:42:03.198 -07 000000501 INF: FPGA: Recv ZDACR 29447
17-03-17 20:42:03.208 -07 000000576 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:42:03.208 -07 000000576 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 20:42:03.208 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:42:03.368 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:42:03.368 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 20:42:03.468 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:42:03.478 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:42:03.478 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:42:03.478 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:42:03.478 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:42:03.478 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:42:03.478 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:42:03.478 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 20:42:03.478 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:42:03.488 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:42:03.588 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 20:42:03.588 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 387 ms overall
17-03-17 20:42:03.618 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:42:03.618 -07 000000576 INF: FPGA: Recv YRDPOS 151568
17-03-17 20:42:03.628 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:03.628 -07 000000433 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:42:03.628 -07 000000433 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 20:42:03.628 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.846 mm, average velocity = 2.187 mm/sec
17-03-17 20:42:04.578 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:42:04.578 -07 000000627 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:42:04.588 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:42:04.588 -07 000000433 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:42:04.598 -07 000000433 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:42:04.598 -07 000000433 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:42:04.598 -07 000000433 INF: Y Motor: Moved to 74.0083 after 1434 ms (table move)
17-03-17 20:42:04.608 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134800 mm (DAC = 29447)
17-03-17 20:42:04.608 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:04.608 -07 000000627 INF: FPGA: Recv ZSGSRD 30270
17-03-17 20:42:04.618 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:42:04.618 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:04.618 -07 000000627 INF: FPGA: Recv ZSGSRD 30275
17-03-17 20:42:04.628 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:04.628 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:04.628 -07 000000433 INF: FPGA: Recv ZSGSRD 30273
17-03-17 20:42:04.638 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:04.638 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:04.638 -07 000000627 INF: FPGA: Recv ZSGSRD 30268
17-03-17 20:42:04.648 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:04.648 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:04.648 -07 000000627 INF: FPGA: Recv ZSGSRD 30275
17-03-17 20:42:04.658 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:04.658 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:04.658 -07 000000627 INF: FPGA: Recv ZSGSRD 30274
17-03-17 20:42:04.668 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:04.668 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:04.668 -07 000000627 INF: FPGA: Recv ZSGSRD 30279
17-03-17 20:42:04.678 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:04.678 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:04.678 -07 000000627 INF: FPGA: Recv ZSGSRD 30272
17-03-17 20:42:04.688 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:04.688 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:04.688 -07 000000433 INF: FPGA: Recv ZSGSRD 30273
17-03-17 20:42:04.698 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:04.698 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:04.698 -07 000000627 INF: FPGA: Recv ZSGSRD 30272
17-03-17 20:42:04.708 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:04.708 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:42:04.708 -07 000000627 INF: FPGA: Recv ZPIEZORD 26260
17-03-17 20:42:04.718 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:04.718 -07 000000382 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.493 V. Piezo Error = -8.8 V.
17-03-17 20:42:04.718 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30273 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30273 (-134.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30268 (-134.0 uncal um), Max = 30279 (-134.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:42:04.718 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30273, posNoise = 6, negNoise = 5
17-03-17 20:42:04.718 -07 000000382 INF: Z Motor: After move to -0.134800, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:42:04.718 -07 000000382 INF: Z Motor: Settle wait time = 1437 ms, measure time = 108 ms (allowed 150 ms), total time = 1545 ms
17-03-17 20:42:04.718 -07 000000382 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 20:42:04.768 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 20:42:04.768 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:42:04.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:42:04.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:42:04.768 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:42:04.768 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:42:04.768 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:42:04.768 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:42:04.768 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:42:04.768 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:42:04.778 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:42:04.778 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:42:04.788 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:42:04.788 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:42:04.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:42:04.838 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:42:05.038 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:42:05.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:42:05.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:42:05.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1477021456, 0x0, 559484976) start.
17-03-17 20:42:05.068 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:42:05.078 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 20:42:05.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 287 ms overall
17-03-17 20:42:05.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1477021456, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:42:05.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:42:05.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:42:05.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:42:05.178 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:42:05.178 -07 000000382 INF: Autofocus start
17-03-17 20:42:05.178 -07 000000382 INF: MeasureProfile start
17-03-17 20:42:05.178 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:42:05.188 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:42:05.188 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:42:05.188 -07 000000382 INF: MeasureProfile done
17-03-17 20:42:05.188 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:42:05.188 -07 000000382 INF: Autofocus finished
17-03-17 20:42:05.388 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:42:05.388 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:42:05.398 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134803526178664. ----------
17-03-17 20:42:05.398 -07 000000610 INF: Cycle	41	Tile	18	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:42:05.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27955, sync = True, waitForSettling = True)
17-03-17 20:42:05.398 -07 000000610 INF: Z Motor: Moving to -0.127970 mm, started at -0.134804 mm, distance = 6.83 um
17-03-17 20:42:05.408 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 4.026244,
17-03-17 20:42:05.418 -07 000000610 INF: FPGA: Xmit ZDACW 27955\n [Z Motor]
17-03-17 20:42:05.418 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:42:05.428 -07 000000610 INF: FPGA: 'ZDACW 27955' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:42:05.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:42:05.428 -07 000000627 INF: FPGA: Recv ZDACR 27955
17-03-17 20:42:05.438 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:05.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:42:05.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:05.588 -07 000000541 INF: FPGA: Recv ZSGSRD 29209
17-03-17 20:42:05.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:05.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:05.598 -07 000000433 INF: FPGA: Recv ZSGSRD 29208
17-03-17 20:42:05.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:05.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:05.608 -07 000000541 INF: FPGA: Recv ZSGSRD 29210
17-03-17 20:42:05.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:05.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:05.618 -07 000000627 INF: FPGA: Recv ZSGSRD 29213
17-03-17 20:42:05.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:05.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:05.628 -07 000000541 INF: FPGA: Recv ZSGSRD 29211
17-03-17 20:42:05.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:05.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:05.648 -07 000000541 INF: FPGA: Recv ZSGSRD 29205
17-03-17 20:42:05.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:42:05.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:05.658 -07 000000627 INF: FPGA: Recv ZSGSRD 29209
17-03-17 20:42:05.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:05.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:05.668 -07 000000382 INF: FPGA: Recv ZSGSRD 29211
17-03-17 20:42:05.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:05.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:05.678 -07 000000382 INF: FPGA: Recv ZSGSRD 29205
17-03-17 20:42:05.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:05.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:05.688 -07 000000429 INF: FPGA: Recv ZSGSRD 29215
17-03-17 20:42:05.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:05.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:42:05.698 -07 000000551 INF: FPGA: Recv ZPIEZORD 24897
17-03-17 20:42:05.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:05.708 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.266 V. Piezo Error = -9.5 V.
17-03-17 20:42:05.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29210 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29210 (-127.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29205 (-127.2 uncal um), Max = 29215 (-127.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:42:05.708 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29210, posNoise = 5, negNoise = 5
17-03-17 20:42:05.708 -07 000000610 INF: Z Motor: After move to -0.127970, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:42:05.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 304 ms)
17-03-17 20:42:05.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:42:05.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:42:05.708 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:42:05.708 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:42:05.708 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:42:05.708 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:42:05.708 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:42:05.708 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:42:05.708 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:42:05.708 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:42:05.708 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:42:05.708 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:42:05.708 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:42:05.708 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:42:05.708 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:42:05.708 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:42:05.718 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:42:05.718 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:42:05.718 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:42:05.718 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:42:05.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 28131 150\n [Camera]
17-03-17 20:42:05.928 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:42:06.338 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:42:06.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:42:06.348 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:42:06.348 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:42:06.348 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:42:06.348 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:42:06.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:42:06.348 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:42:06.348 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:42:06.348 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:42:06.538 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28131 803
17-03-17 20:42:06.688 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:42:06.738 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:42:06.738 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:42:06.738 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:42:06.748 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:42:06.748 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:42:06.748 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:42:06.748 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:42:06.748 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:42:06.758 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:42:06.758 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:42:06.808 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:42:06.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:42:06.888 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:42:06.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:42:06.888 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:42:06.988 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:42:06.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:42:06.988 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:42:06.998 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:42:06.998 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:42:06.998 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:42:06.998 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:42:07.398 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:42:07.398 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:42:07.398 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:42:07.398 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 20:42:07.398 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:42:07.398 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:42:07.408 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:42:07.408 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:42:07.408 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-17 20:42:07.408 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 20:42:07.418 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:42:07.418 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:42:07.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 28131 150' command took 2 ms to send, 1684 ms to get response, and 1692 ms overall
17-03-17 20:42:07.418 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:42:07.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127974588671973. ------
17-03-17 20:42:07.428 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:42:07.428 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13434 mm
17-03-17 20:42:07.428 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:42:08.238 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:42:08.238 -07 000000415 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 20:42:08.238 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:42:09.238 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:42:09.238 -07 000000476 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:42:09.238 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 990 ms to get response, and 996 ms overall
17-03-17 20:42:09.238 -07 000000415 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:42:09.238 -07 000000415 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:42:09.238 -07 000000415 INF: Y Motor: Moving 1351 steps-30
17-03-17 20:42:09.238 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1800 ms to get response, and 1809 ms overall
17-03-17 20:42:09.238 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:42:09.238 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 29347, sync = True, waitForSettling = False)
17-03-17 20:42:09.238 -07 000000476 INF: Z Motor: Moving to -0.134342 mm, started at -0.127975 mm, distance = -6.37 um
17-03-17 20:42:09.248 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:42:09.258 -07 000000476 INF: FPGA: Xmit ZDACW 29347\n [Z Motor]
17-03-17 20:42:10.238 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:42:10.238 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:42:10.238 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 20:42:10.238 -07 000000476 INF: FPGA: 'ZDACW 29347' command took 0 ms to send, 970 ms to get response, and 997 ms overall
17-03-17 20:42:10.238 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:42:10.238 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 980 ms to get response, and 999 ms overall
17-03-17 20:42:10.238 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-17 20:42:10.238 -07 000000512 INF: FPGA: Recv ZDACR 29347
17-03-17 20:42:10.248 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:10.248 -07 000000476 INF: Z Motor: MoveAbsStepped took 1007 ms (did NOT wait for settling yet))
17-03-17 20:42:10.258 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:42:10.258 -07 000000476 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:42:10.268 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:42:10.268 -07 000000415 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:42:10.268 -07 000000415 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 20:42:10.268 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1000 ms, distance = 0.844 mm, average velocity = 0.844 mm/sec
17-03-17 20:42:10.788 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.981281,
17-03-17 20:42:11.218 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:42:11.218 -07 000000541 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:42:11.228 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:42:11.228 -07 000000415 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:42:11.238 -07 000000415 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:42:11.238 -07 000000415 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:42:11.238 -07 000000415 INF: Y Motor: Moved to 74.8325 after 3005 ms (table move)
17-03-17 20:42:11.248 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134342 mm (DAC = 29347)
17-03-17 20:42:11.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:11.248 -07 000000512 INF: FPGA: Recv ZSGSRD 30202
17-03-17 20:42:11.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:42:11.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:11.258 -07 000000478 INF: FPGA: Recv ZSGSRD 30201
17-03-17 20:42:11.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:11.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:11.268 -07 000000512 INF: FPGA: Recv ZSGSRD 30201
17-03-17 20:42:11.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:11.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:11.278 -07 000000478 INF: FPGA: Recv ZSGSRD 30204
17-03-17 20:42:11.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:11.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:11.288 -07 000000541 INF: FPGA: Recv ZSGSRD 30201
17-03-17 20:42:11.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:11.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:11.298 -07 000000478 INF: FPGA: Recv ZSGSRD 30204
17-03-17 20:42:11.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:11.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:11.318 -07 000000415 INF: FPGA: Recv ZSGSRD 30202
17-03-17 20:42:11.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:42:11.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:11.328 -07 000000458 INF: FPGA: Recv ZSGSRD 30201
17-03-17 20:42:11.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:42:11.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:11.358 -07 000000478 INF: FPGA: Recv ZSGSRD 30204
17-03-17 20:42:11.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:42:11.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:11.368 -07 000000458 INF: FPGA: Recv ZSGSRD 30205
17-03-17 20:42:11.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:42:11.398 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:42:11.398 -07 000000478 INF: FPGA: Recv ZPIEZORD 26237
17-03-17 20:42:11.408 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:42:11.408 -07 000000431 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.478 V. Piezo Error = -8.7 V.
17-03-17 20:42:11.408 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30202 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30202 (-133.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 30201 (-133.6 uncal um), Max = 30205 (-133.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 1 (0.0 uncal um)
17-03-17 20:42:11.408 -07 000000431 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30202, posNoise = 3, negNoise = 1
17-03-17 20:42:11.408 -07 000000431 INF: Z Motor: After move to -0.134342, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:42:11.408 -07 000000431 INF: Z Motor: Settle wait time = 2009 ms, measure time = 158 ms (allowed 150 ms), total time = 2167 ms
17-03-17 20:42:11.408 -07 000000431 INF: Z Motor: Warning: Actual position measuring time = 158 ms, longer than max expected time of 150 ms
17-03-17 20:42:11.408 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3980 ms
17-03-17 20:42:11.408 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:42:11.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:42:11.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:42:11.408 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:42:11.408 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:42:11.408 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:42:11.408 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:42:11.418 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:42:11.418 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:42:11.418 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:42:11.418 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:42:11.428 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:42:11.428 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:42:11.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:42:11.478 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:42:11.678 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:42:11.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:42:11.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:42:11.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:42:11.718 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:42:11.718 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 20:42:11.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:42:11.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 20:42:11.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:42:11.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:42:11.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:42:11.808 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:42:11.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 40. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:42:11.818 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:42:11.818 -07 000000512 INF: Autofocus start
17-03-17 20:42:11.818 -07 000000512 INF: MeasureProfile start
17-03-17 20:42:11.818 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:42:11.828 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:42:11.828 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:42:11.828 -07 000000512 INF: MeasureProfile done
17-03-17 20:42:11.828 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:42:11.828 -07 000000512 INF: Autofocus finished
17-03-17 20:42:12.028 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:42:12.028 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:42:12.028 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134347407116599. ----------
17-03-17 20:42:12.028 -07 000000610 INF: Cycle	41	Tile	19	Exposure Settings		A	418	G	201	T	201	C	418
17-03-17 20:42:12.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27854, sync = True, waitForSettling = True)
17-03-17 20:42:12.038 -07 000000610 INF: Z Motor: Moving to -0.127507 mm, started at -0.134347 mm, distance = 6.84 um
17-03-17 20:42:12.038 -07 000000610 INF: FPGA: Xmit ZDACW 27854\n [Z Motor]
17-03-17 20:42:12.038 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 20:42:12.048 -07 000000610 INF: FPGA: 'ZDACW 27854' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:42:12.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:42:12.048 -07 000000501 INF: FPGA: Recv ZDACR 27854
17-03-17 20:42:12.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:12.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:42:12.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:12.208 -07 000000415 INF: FPGA: Recv ZSGSRD 29138
17-03-17 20:42:12.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:42:12.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:12.218 -07 000000458 INF: FPGA: Recv ZSGSRD 29138
17-03-17 20:42:12.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:12.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:12.228 -07 000000541 INF: FPGA: Recv ZSGSRD 29135
17-03-17 20:42:12.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:12.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:12.238 -07 000000501 INF: FPGA: Recv ZSGSRD 29140
17-03-17 20:42:12.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:12.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:12.248 -07 000000458 INF: FPGA: Recv ZSGSRD 29139
17-03-17 20:42:12.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:12.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:12.258 -07 000000476 INF: FPGA: Recv ZSGSRD 29142
17-03-17 20:42:12.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:12.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:12.268 -07 000000415 INF: FPGA: Recv ZSGSRD 29139
17-03-17 20:42:12.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:12.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:12.278 -07 000000501 INF: FPGA: Recv ZSGSRD 29135
17-03-17 20:42:12.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:12.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:12.288 -07 000000415 INF: FPGA: Recv ZSGSRD 29138
17-03-17 20:42:12.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:12.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:42:12.298 -07 000000501 INF: FPGA: Recv ZSGSRD 29135
17-03-17 20:42:12.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:12.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:42:12.308 -07 000000415 INF: FPGA: Recv ZPIEZORD 24826
17-03-17 20:42:12.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:12.318 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.250 V. Piezo Error = -9.5 V.
17-03-17 20:42:12.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.5 um, Read 10 ADC samples: Avg = 29138 (-126.7 uncal um), Error = 0.8 uncal um, Median = 29138 (-126.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29135 (-126.7 uncal um), Max = 29142 (-126.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:42:12.318 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29138, posNoise = 4, negNoise = 3
17-03-17 20:42:12.318 -07 000000610 INF: Z Motor: After move to -0.127507, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:42:12.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:42:12.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:42:12.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:42:12.318 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:42:12.318 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:42:12.318 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:42:12.318 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:42:12.318 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:42:12.318 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:42:12.318 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:42:12.318 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:42:12.318 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:42:12.318 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:42:12.328 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:42:12.328 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:42:12.328 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:42:12.328 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:42:12.338 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:42:12.338 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:42:12.338 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:42:12.338 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:42:12.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 418 418 201 201 28031 150\n [Camera]
17-03-17 20:42:12.548 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:42:12.958 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 610
17-03-17 20:42:12.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 610
17-03-17 20:42:12.968 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:42:12.968 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 610
17-03-17 20:42:12.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 610
17-03-17 20:42:12.968 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:42:12.968 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:42:12.968 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:42:12.968 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:42:12.968 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:42:13.158 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28031 803
17-03-17 20:42:13.388 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 415 ms.
17-03-17 20:42:13.388 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:42:13.388 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:42:13.388 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 953
17-03-17 20:42:13.388 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 419 ms.
17-03-17 20:42:13.388 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 420 ms.
17-03-17 20:42:13.388 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:42:13.388 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:42:13.388 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:42:13.388 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 428 ms.
17-03-17 20:42:13.398 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 431 ms.
17-03-17 20:42:13.508 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1154
17-03-17 20:42:13.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1154
17-03-17 20:42:13.508 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:42:13.508 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1154
17-03-17 20:42:13.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1154
17-03-17 20:42:13.518 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:42:13.518 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:42:13.518 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:42:13.518 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:42:13.518 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 20:42:13.698 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1346
17-03-17 20:42:13.698 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:42:13.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 418 418 201 201 28031 150' command took 2 ms to send, 1345 ms to get response, and 1356 ms overall
17-03-17 20:42:13.888 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:42:13.888 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:42:13.888 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:42:13.888 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:42:13.888 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:42:13.888 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:42:13.898 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:42:13.898 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:42:13.898 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:42:13.898 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:42:13.908 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:42:13.938 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:42:13.938 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:42:13.978 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 20:42:13.998 -07 000000610 INF: Enabling Skipping AutoFocus in the next 3 cycles.
17-03-17 20:42:13.998 -07 000000610 INF: Imaging Cycle 41: ScanTilesCommand Cycle 41 time end. Duration was 171721 ms.
17-03-17 20:42:13.998 -07 000000610 INF: =================== Cycle #41 ===================
17-03-17 20:42:13.998 -07 000000610 INF: ===================  ===================
17-03-17 20:42:13.998 -07 000000448 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:42:13.998 -07 000000551 INF: FPGA: Recv EXLED1ADCR 28
17-03-17 20:42:14.008 -07 000000448 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:42:14.008 -07 000000448 INF: GreenLED: Using Green data: Photodiode ADC 28 --> 0.0 mW (old method), or 2.1 mW (new method). Difference = 2.1 mW
17-03-17 20:42:14.008 -07 000000448 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 41, FrontChillerTemperature: 3.981281, FrontChillerHeatSinkTemperature: 0.23645, AmbientTemperature: 18.969, FlowCellCompartmentTemperature: 21.99399, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.70845, GreenLEDSensorTemperature: 26.07858, PhotodiodePowerAdcGreen: 28, PhotodiodePowerMwGreen: 2.10942
17-03-17 20:42:14.038 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.