17-03-17 20:42:14.088 -07 000000610 INF: =================== Cycle #42 ===================
17-03-17 20:42:14.088 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 20:42:14.088 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 20:42:14.088 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:42:14.098 -07 000000623 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:42:14.098 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:42:14.098 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:42:14.098 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 20:42:14.098 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 20:42:14.098 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 20:42:14.208 -07 000000623 INF: FPGA: Recv YMVTO 154378 872
17-03-17 20:42:14.208 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 117 ms overall
17-03-17 20:42:14.208 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 20:42:14.208 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 20:42:14.208 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 117 ms, distance = 0.548 mm, average velocity = 4.684 mm/sec
17-03-17 20:42:16.148 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.979922,
17-03-17 20:42:16.808 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:42:16.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=585, R2=606, Total=1191. Warn if over 250 bubbles per interval.
17-03-17 20:42:17.208 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:42:17.208 -07 000000448 INF: FPGA: Recv YRDPOS 154381
17-03-17 20:42:17.218 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:42:17.218 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:42:17.228 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:42:17.228 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 20:42:17.228 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3139 ms
17-03-17 20:42:17.238 -07 000000610 INF: =================== Cycle #42, Flow Cell Temp 60° ===================
17-03-17 20:42:17.238 -07 000000610 INF: =================== Cycle #42, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 20:42:17.238 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 20:42:17.238 -07 000000431 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:42:17.248 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:42:17.248 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:42:17.248 -07 000000623 INF: FPGA: Recv TEC2EN 
17-03-17 20:42:17.258 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:17.258 -07 000000610 INF: =================== Cycle #42, Flow Cell Temp 60° ===================
17-03-17 20:42:17.258 -07 000000610 INF: =================== Cycle #42 ===================
17-03-17 20:42:17.258 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:42:17.258 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:42:17.288 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:42:17.288 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 20:42:17.288 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:42:17.588 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:42:17.608 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:42:17.608 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:42:17.658 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:42:17.678 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:42:17.678 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:42:17.778 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3) ===================
17-03-17 20:42:17.778 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:42:17.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:42:17.848 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:42:17.848 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:42:17.848 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:42:17.978 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:42:18.018 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:42:21.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:21.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:42:21.508 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.011254,
17-03-17 20:42:21.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:21.628 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:42:21.808 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 20:42:21.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=586, R2=607, Total=1193. Warn if over 250 bubbles per interval.
17-03-17 20:42:22.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:22.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:42:22.078 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:42:22.078 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3) ===================
17-03-17 20:42:22.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:42:22.238 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:42:22.238 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:42:22.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:42:22.398 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:42:22.398 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:42:22.398 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:42:22.528 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:42:22.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:42:22.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:23.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:42:23.018 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:42:23.018 -07 000000610 INF: =================== Cycle #42 ===================
17-03-17 20:42:24.238 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 20:42:24.238 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 20:42:24.238 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:42:24.258 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:42:24.258 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 20:42:24.258 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 20:42:24.388 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:42:24.408 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 20:42:24.408 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 20:42:24.458 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:42:24.478 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:42:24.478 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:42:24.578 -07 000000610 INF: =================== Cycle #42, Pumping Reagent CMS (4) ===================
17-03-17 20:42:24.578 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:42:24.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:42:24.608 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:42:24.608 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:42:24.608 -07 000000610 INF: =================== Cycle #42, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 20:42:24.738 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:42:24.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:42:26.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:26.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:42:26.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:26.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:42:26.698 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:42:26.698 -07 000000610 INF: =================== Cycle #42, Pumping Reagent CMS (4) ===================
17-03-17 20:42:26.808 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:42:26.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=586, R2=607, Total=1193. Warn if over 250 bubbles per interval.
17-03-17 20:42:26.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:42:26.858 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:42:26.858 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:42:26.868 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.003063,
17-03-17 20:42:26.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:42:27.018 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:42:27.018 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:42:27.018 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:42:27.148 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:42:27.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:42:27.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:27.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:42:27.638 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:42:27.638 -07 000000610 INF: =================== Cycle #42 ===================
17-03-17 20:42:28.858 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:42:28.858 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:42:28.858 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:42:28.878 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:42:28.878 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 20:42:28.878 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 20:42:29.028 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:42:29.048 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 20:42:29.048 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 20:42:29.098 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:42:29.118 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:42:29.118 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:42:29.218 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3) ===================
17-03-17 20:42:29.218 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:42:29.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:42:29.248 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:42:29.248 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:42:29.248 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:42:29.378 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:42:29.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:42:30.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:30.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:42:30.318 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:42:30.318 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3) ===================
17-03-17 20:42:30.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:42:30.478 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:42:30.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:42:30.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:42:30.638 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:42:30.638 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:42:30.638 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:42:30.768 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:42:30.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:42:31.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:31.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:42:31.258 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:42:31.258 -07 000000610 INF: =================== Cycle #42 ===================
17-03-17 20:42:31.258 -07 000000431 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:42:31.258 -07 000000433 INF: WaitCommand(10000) start
17-03-17 20:42:31.258 -07 000000431 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:42:31.808 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 20:42:31.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=586, R2=609, Total=1195. Warn if over 250 bubbles per interval.
17-03-17 20:42:32.228 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.016692,
17-03-17 20:42:32.478 -07 000000431 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:42:32.478 -07 000000431 INF: LanePump: Xmit /1?\r
17-03-17 20:42:32.508 -07 000000431 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:42:32.508 -07 000000431 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:42:32.638 -07 000000431 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:42:32.678 -07 000000431 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:42:34.208 -07 000000431 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:34.238 -07 000000431 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:42:34.658 -07 000000431 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:34.688 -07 000000431 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:42:34.688 -07 000000431 INF: LanePump: Waited 2010 ms for pump motion to complete
17-03-17 20:42:34.688 -07 000000431 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:42:34.688 -07 000000431 INF: ===================  ===================
17-03-17 20:42:36.808 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:42:36.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=586, R2=609, Total=1195. Warn if over 250 bubbles per interval.
17-03-17 20:42:37.588 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.015368,
17-03-17 20:42:41.268 -07 000000433 INF: WaitCommand(10000) end
17-03-17 20:42:41.268 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3) ===================
17-03-17 20:42:41.268 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 20:42:41.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:42:41.298 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:42:41.298 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:42:41.298 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:42:41.428 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 20:42:41.468 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:42:41.808 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:42:41.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=586, R2=609, Total=1195. Warn if over 250 bubbles per interval.
17-03-17 20:42:42.948 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.033041,
17-03-17 20:42:46.808 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 20:42:46.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=587, R2=610, Total=1197. Warn if over 250 bubbles per interval.
17-03-17 20:42:47.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:47.628 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:42:48.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:48.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:42:48.308 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.026244,
17-03-17 20:42:48.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:48.528 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:42:48.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:48.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:42:49.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:49.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:42:49.428 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 20:42:49.428 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3) ===================
17-03-17 20:42:49.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:42:49.588 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:42:49.588 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:42:49.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:42:49.748 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:42:49.748 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:42:49.748 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:42:49.878 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:42:49.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:42:50.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:50.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:42:50.368 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:42:50.368 -07 000000610 INF: =================== Cycle #42 ===================
17-03-17 20:42:51.588 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:42:51.588 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 20:42:51.588 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:42:51.608 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:42:51.608 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 20:42:51.608 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 20:42:51.808 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 11 R1 14
17-03-17 20:42:51.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=14, R2=11, Total=25. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=601, R2=621, Total=1222. Warn if over 250 bubbles per interval.
17-03-17 20:42:51.818 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:42:51.838 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 20:42:51.838 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 20:42:51.888 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:42:51.908 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:42:51.908 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:42:52.008 -07 000000610 INF: =================== Cycle #42, Pumping Reagent IMT (1) ===================
17-03-17 20:42:52.008 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:42:52.008 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:42:52.038 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:42:52.038 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:42:52.038 -07 000000610 INF: =================== Cycle #42, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 20:42:52.168 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:42:52.208 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:42:53.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:53.668 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.977204,
17-03-17 20:42:53.678 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:42:54.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:54.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:42:54.128 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:42:54.128 -07 000000610 INF: =================== Cycle #42, Pumping Reagent IMT (1) ===================
17-03-17 20:42:54.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:42:54.288 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:42:54.288 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:42:54.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:42:54.448 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:42:54.448 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:42:54.448 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:42:54.578 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:42:54.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:42:55.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:55.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:42:55.068 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:42:55.068 -07 000000610 INF: =================== Cycle #42 ===================
17-03-17 20:42:56.288 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 20:42:56.288 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:42:56.288 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:42:56.308 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:42:56.308 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 20:42:56.308 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:42:56.538 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:42:56.558 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 20:42:56.558 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 20:42:56.608 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:42:56.628 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:42:56.628 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:42:56.728 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3) ===================
17-03-17 20:42:56.728 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:42:56.728 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:42:56.758 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:42:56.758 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:42:56.758 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:42:56.808 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 1
17-03-17 20:42:56.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=1, R2=3, Total=4. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=602, R2=624, Total=1226. Warn if over 250 bubbles per interval.
17-03-17 20:42:56.888 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:42:56.928 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:42:57.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:57.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:42:57.828 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:42:57.828 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3) ===================
17-03-17 20:42:57.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:42:57.988 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:42:57.988 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:42:58.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:42:58.148 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:42:58.148 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:42:58.148 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:42:58.278 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:42:58.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:42:58.738 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:42:58.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:42:58.768 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:42:58.768 -07 000000610 INF: =================== Cycle #42 ===================
17-03-17 20:42:58.768 -07 000000610 INF: =================== Cycle #42, Flow Cell Temp 65° ===================
17-03-17 20:42:58.768 -07 000000610 INF: =================== Cycle #42, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 20:42:58.768 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 20:42:58.768 -07 000000623 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:42:58.778 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:42:58.778 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:42:58.778 -07 000000627 INF: FPGA: Recv TEC2EN 
17-03-17 20:42:58.788 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:42:58.788 -07 000000610 INF: =================== Cycle #42, Flow Cell Temp 65° ===================
17-03-17 20:42:58.788 -07 000000610 INF: =================== Cycle #42 ===================
17-03-17 20:42:58.788 -07 000000610 INF: WaitCommand(30000) start
17-03-17 20:42:59.028 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.978563,
17-03-17 20:43:01.808 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 20:43:01.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=603, R2=625, Total=1228. Warn if over 250 bubbles per interval.
17-03-17 20:43:04.388 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.99219,
17-03-17 20:43:06.808 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:43:06.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=603, R2=625, Total=1228. Warn if over 250 bubbles per interval.
17-03-17 20:43:09.748 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.012614,
17-03-17 20:43:11.808 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:43:11.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=603, R2=625, Total=1228. Warn if over 250 bubbles per interval.
17-03-17 20:43:15.108 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.047997,
17-03-17 20:43:16.808 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:43:16.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=603, R2=625, Total=1228. Warn if over 250 bubbles per interval.
17-03-17 20:43:20.468 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.009895,
17-03-17 20:43:21.808 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:43:21.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=603, R2=625, Total=1228. Warn if over 250 bubbles per interval.
17-03-17 20:43:25.828 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.98264,
17-03-17 20:43:26.808 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:43:26.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=603, R2=625, Total=1228. Warn if over 250 bubbles per interval.
17-03-17 20:43:28.798 -07 000000610 INF: WaitCommand(30000) end
17-03-17 20:43:28.798 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3) ===================
17-03-17 20:43:28.798 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 20:43:28.898 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:43:28.928 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:43:28.928 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:43:28.928 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:43:29.058 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 20:43:29.098 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:43:29.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:43:29.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:43:29.668 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 20:43:29.668 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3) ===================
17-03-17 20:43:29.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:43:29.828 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:43:29.828 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:43:29.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:43:29.988 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:43:29.988 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:43:29.988 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:43:30.118 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:43:30.148 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:43:30.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:43:30.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:43:30.608 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:43:30.608 -07 000000610 INF: =================== Cycle #42 ===================
17-03-17 20:43:30.608 -07 000000623 INF: WaitCommand(30000) start
17-03-17 20:43:30.608 -07 000000576 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:43:30.608 -07 000000576 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:43:31.188 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.988112,
17-03-17 20:43:31.808 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:43:31.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=603, R2=625, Total=1228. Warn if over 250 bubbles per interval.
17-03-17 20:43:31.828 -07 000000576 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:43:31.828 -07 000000576 INF: LanePump: Xmit /1?\r
17-03-17 20:43:31.858 -07 000000576 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:43:31.858 -07 000000576 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:43:31.988 -07 000000576 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:43:32.028 -07 000000576 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:43:34.368 -07 000000576 INF: LanePump: Xmit /1Q\r
17-03-17 20:43:34.398 -07 000000576 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:43:34.818 -07 000000576 INF: LanePump: Xmit /1Q\r
17-03-17 20:43:34.848 -07 000000576 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:43:34.848 -07 000000576 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 20:43:34.848 -07 000000576 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:43:34.848 -07 000000576 INF: ===================  ===================
17-03-17 20:43:36.548 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.979922,
17-03-17 20:43:36.808 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:43:36.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=603, R2=625, Total=1228. Warn if over 250 bubbles per interval.
17-03-17 20:43:41.808 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:43:41.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=603, R2=625, Total=1228. Warn if over 250 bubbles per interval.
17-03-17 20:43:41.908 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.99219,
17-03-17 20:43:46.808 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:43:46.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=603, R2=625, Total=1228. Warn if over 250 bubbles per interval.
17-03-17 20:43:47.268 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.985358,
17-03-17 20:43:51.808 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:43:51.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=603, R2=625, Total=1228. Warn if over 250 bubbles per interval.
17-03-17 20:43:52.628 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.977204,
17-03-17 20:43:56.808 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:43:56.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=603, R2=625, Total=1228. Warn if over 250 bubbles per interval.
17-03-17 20:43:57.988 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.977204,
17-03-17 20:44:00.618 -07 000000623 INF: WaitCommand(30000) end
17-03-17 20:44:00.618 -07 000000610 INF: =================== Cycle #42, Flow Cell Temp 22° ===================
17-03-17 20:44:00.618 -07 000000610 INF: =================== Cycle #42, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 20:44:00.618 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 20:44:00.628 -07 000000627 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:44:00.628 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:44:00.628 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:44:00.628 -07 000000623 INF: FPGA: Recv TEC2EN 
17-03-17 20:44:00.638 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:44:00.638 -07 000000610 INF: =================== Cycle #42, Flow Cell Temp 22° ===================
17-03-17 20:44:00.638 -07 000000610 INF: =================== Cycle #42 ===================
17-03-17 20:44:00.638 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3) ===================
17-03-17 20:44:00.638 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:44:00.638 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:44:00.678 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:44:00.678 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:44:00.678 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:44:00.808 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:44:00.848 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:44:01.808 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:44:01.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=603, R2=625, Total=1228. Warn if over 250 bubbles per interval.
17-03-17 20:44:03.348 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.993549,
17-03-17 20:44:03.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:44:04.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:44:04.428 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:44:04.458 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:44:04.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:44:04.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:44:04.908 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:44:04.908 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3) ===================
17-03-17 20:44:05.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:44:05.068 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:44:05.068 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:44:05.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:44:05.228 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:44:05.228 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:44:05.228 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:44:05.358 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:44:05.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:44:05.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:44:05.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:44:05.848 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:44:05.848 -07 000000610 INF: =================== Cycle #42 ===================
17-03-17 20:44:06.808 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 4
17-03-17 20:44:06.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=4, R2=4, Total=8. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=607, R2=629, Total=1236. Warn if over 250 bubbles per interval.
17-03-17 20:44:07.068 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:44:07.068 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 20:44:07.068 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:44:07.088 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:44:07.088 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 20:44:07.088 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 20:44:07.238 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:44:07.258 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:44:07.258 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:44:07.308 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:44:07.328 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:44:07.328 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:44:07.428 -07 000000610 INF: =================== Cycle #42, Pumping Reagent USM (2) ===================
17-03-17 20:44:07.428 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:44:07.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:44:07.458 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:44:07.458 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:44:07.458 -07 000000610 INF: =================== Cycle #42, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 20:44:07.588 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:44:07.628 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:44:08.708 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.001704,
17-03-17 20:44:09.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:44:09.098 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:44:09.518 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:44:09.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:44:09.548 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:44:09.548 -07 000000610 INF: =================== Cycle #42, Pumping Reagent USM (2) ===================
17-03-17 20:44:09.678 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:44:09.708 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:44:09.708 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:44:09.838 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:44:09.868 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:44:09.868 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:44:09.868 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:44:09.998 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:44:10.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:44:10.458 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:44:10.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:44:10.488 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:44:10.488 -07 000000610 INF: =================== Cycle #42 ===================
17-03-17 20:44:11.708 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:44:11.708 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:44:11.708 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:44:11.728 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:44:11.728 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 20:44:11.728 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:44:11.808 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:44:11.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=607, R2=629, Total=1236. Warn if over 250 bubbles per interval.
17-03-17 20:44:11.878 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:44:11.898 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:44:11.898 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:44:11.948 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:44:11.968 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:44:11.968 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:44:12.068 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3) ===================
17-03-17 20:44:12.068 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:44:12.068 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:44:12.098 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:44:12.098 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:44:12.098 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:44:12.228 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:44:12.268 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:44:13.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:44:13.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:44:13.168 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 20:44:13.168 -07 000000610 INF: =================== Cycle #42, Pumping Reagent PR2 (3) ===================
17-03-17 20:44:13.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:44:13.328 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:44:13.328 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:44:13.458 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:44:13.488 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:44:13.488 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:44:13.488 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:44:13.618 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:44:13.648 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:44:14.068 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.981281,
17-03-17 20:44:14.078 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:44:14.108 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:44:14.108 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:44:14.108 -07 000000610 INF: =================== Cycle #42 ===================
17-03-17 20:44:14.108 -07 000000627 INF: WaitCommand(10000) start
17-03-17 20:44:14.108 -07 000000431 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:44:14.108 -07 000000431 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:44:15.328 -07 000000431 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:44:15.328 -07 000000431 INF: LanePump: Xmit /1?\r
17-03-17 20:44:15.358 -07 000000431 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:44:15.358 -07 000000431 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:44:15.488 -07 000000431 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:44:15.528 -07 000000431 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:44:16.808 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-17 20:44:16.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=629, Total=1238. Warn if over 250 bubbles per interval.
17-03-17 20:44:17.058 -07 000000431 INF: LanePump: Xmit /1Q\r
17-03-17 20:44:17.088 -07 000000431 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:44:17.508 -07 000000431 INF: LanePump: Xmit /1Q\r
17-03-17 20:44:17.538 -07 000000431 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:44:17.538 -07 000000431 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:44:17.538 -07 000000431 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:44:17.538 -07 000000431 INF: ===================  ===================
17-03-17 20:44:19.428 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.001704,
17-03-17 20:44:21.808 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:44:21.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=629, Total=1238. Warn if over 250 bubbles per interval.
17-03-17 20:44:24.118 -07 000000627 INF: WaitCommand(10000) end
17-03-17 20:44:24.118 -07 000000610 INF: =================== Cycle #42, Imaging ===================
17-03-17 20:44:24.118 -07 000000610 INF: Imaging Cycle 42: ScanTilesCommand Cycle 42 time start.
17-03-17 20:44:24.118 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 20:44:24.118 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:44:24.148 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:44:24.148 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 20:44:24.148 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 20:44:24.448 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:44:24.468 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:44:24.468 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:44:24.518 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:44:24.538 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:44:24.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:44:24.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:44:24.538 -07 000000431 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 20:44:24.538 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:44:24.538 -07 000000431 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 20:44:24.538 -07 000000623 INF: FPGA: Recv EXLED1ON 
17-03-17 20:44:24.548 -07 000000431 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:44:24.548 -07 000000431 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 20:44:24.548 -07 000000626 INF: FPGA: Recv EXLED1ADCR 23196
17-03-17 20:44:24.558 -07 000000431 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:24.558 -07 000000431 INF: RedLED: Using Red data: Photodiode ADC 23196 --> 7.4 mW (old method), or 205.6 mW (new method). Difference = 198.1 mW
17-03-17 20:44:24.558 -07 000000431 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 20:44:24.558 -07 000000626 INF: FPGA: Recv EXLED1OFF 
17-03-17 20:44:24.568 -07 000000431 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:24.568 -07 000000431 INF: RedLED: LED was on for 20 ms
17-03-17 20:44:24.568 -07 000000431 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 20:44:24.568 -07 000000431 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 20:44:24.568 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:44:24.568 -07 000000431 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 20:44:24.568 -07 000000462 INF: FPGA: Recv EXLED2ON 
17-03-17 20:44:24.578 -07 000000431 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:44:24.578 -07 000000431 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:44:24.578 -07 000000626 INF: FPGA: Recv EXLED1ADCR 2099
17-03-17 20:44:24.588 -07 000000431 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:24.588 -07 000000431 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW
17-03-17 20:44:24.588 -07 000000431 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 20:44:24.588 -07 000000626 INF: FPGA: Recv EXLED2OFF 
17-03-17 20:44:24.598 -07 000000431 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:24.598 -07 000000431 INF: GreenLED: LED was on for 20 ms
17-03-17 20:44:24.598 -07 000000431 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 20:44:24.598 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:44:24.608 -07 000000626 INF: FPGA: Recv EMCUR 
17-03-17 20:44:24.608 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:44:24.608 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 20:44:24.788 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.986717,
17-03-17 20:44:25.108 -07 000000623 INF: FPGA: Recv EMOUT
17-03-17 20:44:25.108 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 496 ms to get response, and 505 ms overall
17-03-17 20:44:25.108 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 20:44:25.108 -07 000000623 INF: FPGA: Recv EMCUR 
17-03-17 20:44:25.118 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:44:25.118 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:44:25.118 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38134765625, Z-Position -0.127512045397766. ------
17-03-17 20:44:25.118 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:44:25.118 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17947 mm
17-03-17 20:44:25.118 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:44:25.128 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:44:25.128 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:44:25.128 -07 000000623 INF: Y Motor: Moving to 59.9126 mm, started at 75.3813 mm, delta = -15.4687 mm
17-03-17 20:44:25.128 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:25.128 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:44:25.128 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 39204, sync = True, waitForSettling = False)
17-03-17 20:44:25.128 -07 000000627 INF: Z Motor: Moving to -0.179464 mm, started at -0.127512 mm, distance = -51.95 um
17-03-17 20:44:25.128 -07 000000502 INF: FPGA: Recv YRDPOS 154381
17-03-17 20:44:25.138 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:25.138 -07 000000623 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:25.138 -07 000000623 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 20:44:25.138 -07 000000623 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:44:25.138 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:44:25.148 -07 000000627 INF: FPGA: Xmit ZDACW 39204\n [Z Motor]
17-03-17 20:44:25.148 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:44:25.158 -07 000000627 INF: FPGA: 'ZDACW 39204' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:44:25.158 -07 000000623 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:44:25.168 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:44:25.168 -07 000000012 INF: FPGA: Recv ZDACR 39204
17-03-17 20:44:25.178 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:44:25.178 -07 000000627 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 20:44:25.338 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:44:25.338 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 20:44:26.808 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 20:44:26.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=630, Total=1239. Warn if over 250 bubbles per interval.
17-03-17 20:44:26.838 -07 000000502 INF: FPGA: Recv YMVTO 122703 24776
17-03-17 20:44:26.838 -07 000000623 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-17 20:44:26.838 -07 000000623 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:44:26.838 -07 000000623 INF: Y Motor: To move from 75.381 to 59.913 (-15.469 mm) should take 24750 steps, but required 24776 steps (15.485 mm). Slippage = 0.016 mm (0.00%).
17-03-17 20:44:26.838 -07 000000623 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.469 mm, average velocity = 9.073 mm/sec
17-03-17 20:44:29.688 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:29.688 -07 000000431 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:44:29.698 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:44:29.698 -07 000000623 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:29.718 -07 000000623 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:44:29.718 -07 000000623 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 20:44:29.718 -07 000000623 INF: Y Motor: Moved to 59.9111 after 4593 ms
17-03-17 20:44:29.718 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179464 mm (DAC = 39204)
17-03-17 20:44:29.718 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:29.728 -07 000000623 INF: FPGA: Recv ZSGSRD 37230
17-03-17 20:44:29.728 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:44:29.728 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:29.728 -07 000000623 INF: FPGA: Recv ZSGSRD 37226
17-03-17 20:44:29.738 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:29.738 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:29.738 -07 000000623 INF: FPGA: Recv ZSGSRD 37226
17-03-17 20:44:29.748 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:29.748 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:29.748 -07 000000623 INF: FPGA: Recv ZSGSRD 37225
17-03-17 20:44:29.758 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:29.758 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:29.758 -07 000000623 INF: FPGA: Recv ZSGSRD 37227
17-03-17 20:44:29.768 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:29.768 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:29.768 -07 000000480 INF: FPGA: Recv ZSGSRD 37225
17-03-17 20:44:29.778 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:29.778 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:29.778 -07 000000569 INF: FPGA: Recv ZSGSRD 37229
17-03-17 20:44:29.788 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:44:29.788 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:29.788 -07 000000569 INF: FPGA: Recv ZSGSRD 37227
17-03-17 20:44:29.798 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:29.798 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:29.798 -07 000000569 INF: FPGA: Recv ZSGSRD 37225
17-03-17 20:44:29.808 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:29.808 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:29.808 -07 000000480 INF: FPGA: Recv ZSGSRD 37225
17-03-17 20:44:29.818 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:29.818 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:44:29.818 -07 000000012 INF: FPGA: Recv ZPIEZORD 33704
17-03-17 20:44:29.828 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:29.828 -07 000000462 INF: Z Motor: Piezo is near 52.0 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.982 V. Piezo Error = -7.8 V.
17-03-17 20:44:29.828 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37226 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37226 (-178.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 37225 (-178.6 uncal um), Max = 37230 (-178.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 1 (0.0 uncal um)
17-03-17 20:44:29.828 -07 000000462 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37226, posNoise = 4, negNoise = 1
17-03-17 20:44:29.828 -07 000000462 INF: Z Motor: After move to -0.179464, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:44:29.828 -07 000000462 INF: Z Motor: Settle wait time = 4594 ms, measure time = 104 ms (allowed 150 ms), total time = 4698 ms
17-03-17 20:44:29.828 -07 000000462 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:44:29.878 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4753 ms
17-03-17 20:44:29.878 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:44:29.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:44:29.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:44:29.878 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:44:29.878 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:44:29.878 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:44:29.878 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:44:29.878 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:44:29.878 -07 000000482 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:44:29.908 -07 000000482 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 20:44:29.908 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:44:29.908 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:44:29.908 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:44:29.918 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:44:29.918 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 20:44:29.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:44:29.968 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:44:30.148 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.985358,
17-03-17 20:44:30.168 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:44:30.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:44:30.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:44:30.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1477464320, 0x0, 559484976) start.
17-03-17 20:44:30.208 -07 000000012 INF: FPGA: Recv @CAMSNAP 282
17-03-17 20:44:30.208 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 20:44:30.208 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 286 ms overall
17-03-17 20:44:30.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1477464320, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 20:44:30.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:30.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:44:30.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:44:30.408 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:44:30.408 -07 000000627 INF: Image SNR check: start
17-03-17 20:44:30.408 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:44:30.418 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:44:30.418 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:44:30.418 -07 000000627 INF: Image SNR check: pass  [peak (Max-Min)=64.32]
17-03-17 20:44:30.418 -07 000000627 INF: Autofocus start
17-03-17 20:44:30.418 -07 000000627 INF: MeasureProfile start
17-03-17 20:44:30.428 -07 000000627 INF: MeasureProfile done
17-03-17 20:44:30.428 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:44:30.438 -07 000000627 INF: Autofocus finished
17-03-17 20:44:30.618 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:44:30.618 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:44:30.618 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.179471073200328. ----------
17-03-17 20:44:30.618 -07 000000610 INF: Cycle	42	Tile	1	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:44:30.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37719, sync = True, waitForSettling = True)
17-03-17 20:44:30.628 -07 000000610 INF: Z Motor: Moving to -0.172667 mm, started at -0.179471 mm, distance = 6.80 um
17-03-17 20:44:30.628 -07 000000610 INF: FPGA: Xmit ZDACW 37719\n [Z Motor]
17-03-17 20:44:30.628 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:44:30.638 -07 000000610 INF: FPGA: 'ZDACW 37719' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:44:30.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:44:30.638 -07 000000627 INF: FPGA: Recv ZDACR 37719
17-03-17 20:44:30.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:30.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:44:30.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:30.798 -07 000000462 INF: FPGA: Recv ZSGSRD 36164
17-03-17 20:44:30.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:44:30.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:30.808 -07 000000627 INF: FPGA: Recv ZSGSRD 36169
17-03-17 20:44:30.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:30.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:30.818 -07 000000482 INF: FPGA: Recv ZSGSRD 36168
17-03-17 20:44:30.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:30.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:30.828 -07 000000012 INF: FPGA: Recv ZSGSRD 36167
17-03-17 20:44:30.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:30.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:30.838 -07 000000462 INF: FPGA: Recv ZSGSRD 36168
17-03-17 20:44:30.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:30.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:30.848 -07 000000627 INF: FPGA: Recv ZSGSRD 36167
17-03-17 20:44:30.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:30.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:30.858 -07 000000462 INF: FPGA: Recv ZSGSRD 36168
17-03-17 20:44:30.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:30.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:30.868 -07 000000482 INF: FPGA: Recv ZSGSRD 36175
17-03-17 20:44:30.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:30.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:30.878 -07 000000462 INF: FPGA: Recv ZSGSRD 36168
17-03-17 20:44:30.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:30.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:30.888 -07 000000012 INF: FPGA: Recv ZSGSRD 36169
17-03-17 20:44:30.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:30.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:44:30.898 -07 000000462 INF: FPGA: Recv ZPIEZORD 32306
17-03-17 20:44:30.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:30.908 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.756 V. Piezo Error = -8.5 V.
17-03-17 20:44:30.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36168 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36168 (-171.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36164 (-171.8 uncal um), Max = 36175 (-171.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:44:30.908 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36168, posNoise = 7, negNoise = 4
17-03-17 20:44:30.908 -07 000000610 INF: Z Motor: After move to -0.172667, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:44:30.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:44:30.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:44:30.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:44:30.908 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:44:30.908 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:44:30.908 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:44:30.908 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:44:30.908 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:44:30.908 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:44:30.908 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:44:30.908 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:44:30.908 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:44:30.908 -07 000000482 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:44:30.918 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:44:30.918 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:44:30.928 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:44:30.928 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:44:30.938 -07 000000482 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 20:44:30.938 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:44:30.938 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:44:30.938 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:44:30.948 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:44:30.948 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 20:44:30.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37896 150\n [Camera]
17-03-17 20:44:31.148 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:44:31.568 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:44:31.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:44:31.568 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:44:31.568 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:44:31.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:44:31.578 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:44:31.578 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:44:31.578 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:44:31.578 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:44:31.578 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:44:31.758 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37896 804
17-03-17 20:44:31.818 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 20:44:31.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:44:31.918 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 955
17-03-17 20:44:31.968 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:44:31.968 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:44:31.968 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:31.968 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:44:31.968 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:44:31.968 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:31.978 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:44:31.978 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:44:31.978 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:44:31.988 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:44:32.118 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:44:32.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:44:32.118 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:44:32.118 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:44:32.118 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 20:44:32.118 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:44:32.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:44:32.118 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:44:32.118 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:44:32.118 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) start.
17-03-17 20:44:32.308 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-17 20:44:32.308 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:44:32.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37896 150' command took 2 ms to send, 1342 ms to get response, and 1354 ms overall
17-03-17 20:44:32.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:44:32.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.172674256754345. ------
17-03-17 20:44:32.308 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:44:32.308 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17902 mm
17-03-17 20:44:32.308 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:44:32.318 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:44:32.318 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:44:32.318 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:44:32.318 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:44:32.318 -07 000000431 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 20:44:32.318 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 39108, sync = True, waitForSettling = False)
17-03-17 20:44:32.318 -07 000000547 INF: Z Motor: Moving to -0.179025 mm, started at -0.172674 mm, distance = -6.35 um
17-03-17 20:44:32.328 -07 000000547 INF: FPGA: Xmit ZDACW 39108\n [Z Motor]
17-03-17 20:44:32.328 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:44:32.338 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:32.338 -07 000000547 INF: FPGA: 'ZDACW 39108' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:44:32.338 -07 000000475 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:44:32.348 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:44:32.348 -07 000000431 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:32.348 -07 000000431 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:44:32.348 -07 000000431 INF: Y Motor: Moving 1330 steps2
17-03-17 20:44:32.348 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:44:32.348 -07 000000480 INF: FPGA: Recv ZDACR 39108
17-03-17 20:44:32.358 -07 000000547 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:44:32.358 -07 000000547 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 20:44:32.358 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:44:32.518 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:44:32.518 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:44:32.518 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 20:44:32.518 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:44:32.518 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:32.518 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 20:44:32.518 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:44:32.518 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:32.528 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:44:32.528 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 20:44:32.528 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 20:44:32.538 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 20:44:32.728 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 20:44:32.728 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:44:32.758 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:32.768 -07 000000480 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:44:32.768 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:44:32.768 -07 000000431 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:32.768 -07 000000431 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:44:32.768 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.831 mm, average velocity = 2.149 mm/sec
17-03-17 20:44:33.718 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:33.718 -07 000000480 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:44:33.728 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:44:33.728 -07 000000431 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:33.748 -07 000000431 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:44:33.748 -07 000000431 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:44:33.748 -07 000000431 INF: Y Motor: Moved to 60.7334 after 1429 ms (table move)
17-03-17 20:44:33.748 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179025 mm (DAC = 39108)
17-03-17 20:44:33.748 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:33.758 -07 000000475 INF: FPGA: Recv ZSGSRD 37167
17-03-17 20:44:33.758 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:44:33.758 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:33.758 -07 000000012 INF: FPGA: Recv ZSGSRD 37158
17-03-17 20:44:33.768 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:33.768 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:33.768 -07 000000431 INF: FPGA: Recv ZSGSRD 37157
17-03-17 20:44:33.778 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:33.778 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:33.778 -07 000000475 INF: FPGA: Recv ZSGSRD 37154
17-03-17 20:44:33.788 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:33.788 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:33.788 -07 000000431 INF: FPGA: Recv ZSGSRD 37153
17-03-17 20:44:33.798 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:33.798 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:33.798 -07 000000569 INF: FPGA: Recv ZSGSRD 37161
17-03-17 20:44:33.808 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:33.808 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:33.808 -07 000000480 INF: FPGA: Recv ZSGSRD 37162
17-03-17 20:44:33.818 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:33.818 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:33.818 -07 000000482 INF: FPGA: Recv ZSGSRD 37158
17-03-17 20:44:33.828 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:33.828 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:33.828 -07 000000462 INF: FPGA: Recv ZSGSRD 37156
17-03-17 20:44:33.838 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:33.838 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:33.838 -07 000000480 INF: FPGA: Recv ZSGSRD 37150
17-03-17 20:44:33.848 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:33.848 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:44:33.848 -07 000000462 INF: FPGA: Recv ZPIEZORD 33619
17-03-17 20:44:33.858 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:33.858 -07 000000626 INF: Z Motor: Piezo is near 51.8 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.967 V. Piezo Error = -7.9 V.
17-03-17 20:44:33.858 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.0 um, Read 10 ADC samples: Avg = 37158 (-178.1 uncal um), Error = 0.9 uncal um, Median = 37158 (-178.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 37150 (-178.1 uncal um), Max = 37167 (-178.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:44:33.858 -07 000000626 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37158, posNoise = 9, negNoise = 8
17-03-17 20:44:33.858 -07 000000626 INF: Z Motor: After move to -0.179025, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:44:33.858 -07 000000626 INF: Z Motor: Settle wait time = 1434 ms, measure time = 103 ms (allowed 150 ms), total time = 1537 ms
17-03-17 20:44:33.858 -07 000000626 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:44:33.908 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 20:44:33.908 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:44:33.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:44:33.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:44:33.908 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:44:33.908 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:44:33.908 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:44:33.908 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:44:33.908 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:44:33.908 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:44:33.918 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:44:33.918 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:44:33.928 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:44:33.928 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:44:33.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:44:33.978 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:44:34.178 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:44:34.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:44:34.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:44:34.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:44:34.218 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:44:34.218 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 20:44:34.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:44:34.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:44:34.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:34.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:44:34.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:44:34.318 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:44:34.318 -07 000000433 INF: Autofocus start
17-03-17 20:44:34.318 -07 000000433 INF: MeasureProfile start
17-03-17 20:44:34.328 -07 000000433 INF: MeasureProfile done
17-03-17 20:44:34.328 -07 000000433 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:44:34.328 -07 000000433 INF: Autofocus finished
17-03-17 20:44:34.328 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:44:34.328 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 7 ms to get response, and 13 ms overall
17-03-17 20:44:34.328 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:44:34.538 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:44:34.538 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-17 20:44:34.538 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.179034226774689. ----------
17-03-17 20:44:34.538 -07 000000610 INF: Cycle	42	Tile	2	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:44:34.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37623, sync = True, waitForSettling = True)
17-03-17 20:44:34.538 -07 000000610 INF: Z Motor: Moving to -0.172227 mm, started at -0.179034 mm, distance = 6.81 um
17-03-17 20:44:34.538 -07 000000610 INF: FPGA: Xmit ZDACW 37623\n [Z Motor]
17-03-17 20:44:34.548 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:44:34.548 -07 000000610 INF: FPGA: 'ZDACW 37623' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:44:34.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:44:34.548 -07 000000482 INF: FPGA: Recv ZDACR 37623
17-03-17 20:44:34.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:44:34.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:44:34.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:34.708 -07 000000433 INF: FPGA: Recv ZSGSRD 36106
17-03-17 20:44:34.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:44:34.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:34.718 -07 000000482 INF: FPGA: Recv ZSGSRD 36101
17-03-17 20:44:34.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:34.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:34.728 -07 000000433 INF: FPGA: Recv ZSGSRD 36099
17-03-17 20:44:34.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:34.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:34.738 -07 000000433 INF: FPGA: Recv ZSGSRD 36099
17-03-17 20:44:34.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:34.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:34.748 -07 000000482 INF: FPGA: Recv ZSGSRD 36100
17-03-17 20:44:34.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:34.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:34.758 -07 000000482 INF: FPGA: Recv ZSGSRD 36100
17-03-17 20:44:34.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:34.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:34.768 -07 000000433 INF: FPGA: Recv ZSGSRD 36097
17-03-17 20:44:34.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:34.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:34.778 -07 000000433 INF: FPGA: Recv ZSGSRD 36104
17-03-17 20:44:34.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:34.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:34.788 -07 000000482 INF: FPGA: Recv ZSGSRD 36105
17-03-17 20:44:34.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:34.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:34.798 -07 000000433 INF: FPGA: Recv ZSGSRD 36100
17-03-17 20:44:34.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:34.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:44:34.808 -07 000000482 INF: FPGA: Recv ZPIEZORD 32188
17-03-17 20:44:34.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:34.818 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.741 V. Piezo Error = -8.6 V.
17-03-17 20:44:34.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36101 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36100 (-171.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36097 (-171.3 uncal um), Max = 36106 (-171.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:44:34.818 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36101, posNoise = 5, negNoise = 4
17-03-17 20:44:34.818 -07 000000610 INF: Z Motor: After move to -0.172227, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:44:34.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 20:44:34.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:44:34.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:44:34.818 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:44:34.818 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:44:34.818 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:44:34.818 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:44:34.818 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:44:34.818 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:44:34.818 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:44:34.818 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:44:34.818 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:44:34.818 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:44:34.828 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:44:34.828 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:44:34.828 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:44:34.828 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:44:34.838 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:44:34.838 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:44:34.838 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:44:34.838 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:44:34.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37799 150\n [Camera]
17-03-17 20:44:35.048 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:44:35.468 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:44:35.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:44:35.468 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:44:35.468 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:44:35.468 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:44:35.468 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:44:35.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:44:35.468 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:44:35.468 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:44:35.468 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:44:35.508 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.986717,
17-03-17 20:44:35.658 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37799 804
17-03-17 20:44:35.808 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:44:35.858 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:44:35.858 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:44:35.858 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:35.868 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:44:35.868 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:44:35.868 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:44:35.868 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:44:35.868 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:35.868 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:44:35.878 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:44:36.008 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:44:36.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:44:36.008 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:44:36.008 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:44:36.008 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 20:44:36.008 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:44:36.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:44:36.008 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:44:36.008 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:44:36.008 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 20:44:36.198 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:44:36.198 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:44:36.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37799 150' command took 2 ms to send, 1345 ms to get response, and 1355 ms overall
17-03-17 20:44:36.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:44:36.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.172243834540847. ------
17-03-17 20:44:36.208 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17869 mm
17-03-17 20:44:36.208 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:44:36.208 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:44:36.208 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:44:36.208 -07 000000433 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 20:44:36.208 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 39034, sync = True, waitForSettling = False)
17-03-17 20:44:36.208 -07 000000547 INF: Z Motor: Moving to -0.178686 mm, started at -0.172244 mm, distance = -6.44 um
17-03-17 20:44:36.218 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:36.218 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:44:36.218 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:44:36.218 -07 000000012 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:44:36.228 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:44:36.228 -07 000000547 INF: FPGA: Xmit ZDACW 39034\n [Z Motor]
17-03-17 20:44:36.228 -07 000000433 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:36.228 -07 000000433 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:44:36.228 -07 000000433 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:44:36.228 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:44:36.238 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:44:36.238 -07 000000547 INF: FPGA: 'ZDACW 39034' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:44:36.248 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:44:36.258 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:44:36.258 -07 000000012 INF: FPGA: Recv ZDACR 39034
17-03-17 20:44:36.268 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:44:36.268 -07 000000547 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 20:44:36.408 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:44:36.408 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:44:36.408 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:36.408 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:44:36.408 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:44:36.408 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:36.418 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:44:36.418 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:44:36.418 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:44:36.418 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:44:36.438 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:44:36.438 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:44:36.618 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 20:44:36.618 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:44:36.658 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:36.658 -07 000000502 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:44:36.668 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:44:36.668 -07 000000433 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:36.668 -07 000000433 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:44:36.668 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 20:44:36.808 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:44:36.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:44:37.618 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:37.618 -07 000000475 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:44:37.628 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:44:37.628 -07 000000433 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:37.648 -07 000000433 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:44:37.648 -07 000000433 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:44:37.648 -07 000000433 INF: Y Motor: Moved to 61.5640 after 1436 ms (table move)
17-03-17 20:44:37.648 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178686 mm (DAC = 39034)
17-03-17 20:44:37.648 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:37.648 -07 000000569 INF: FPGA: Recv ZSGSRD 37112
17-03-17 20:44:37.658 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:44:37.658 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:37.658 -07 000000475 INF: FPGA: Recv ZSGSRD 37101
17-03-17 20:44:37.668 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:44:37.668 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:37.668 -07 000000433 INF: FPGA: Recv ZSGSRD 37102
17-03-17 20:44:37.678 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:37.678 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:37.678 -07 000000475 INF: FPGA: Recv ZSGSRD 37099
17-03-17 20:44:37.688 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:37.688 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:37.688 -07 000000623 INF: FPGA: Recv ZSGSRD 37107
17-03-17 20:44:37.698 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:37.698 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:37.698 -07 000000433 INF: FPGA: Recv ZSGSRD 37114
17-03-17 20:44:37.708 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:37.708 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:37.708 -07 000000012 INF: FPGA: Recv ZSGSRD 37106
17-03-17 20:44:37.718 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:37.718 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:37.718 -07 000000462 INF: FPGA: Recv ZSGSRD 37102
17-03-17 20:44:37.728 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:37.728 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:37.728 -07 000000462 INF: FPGA: Recv ZSGSRD 37103
17-03-17 20:44:37.738 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:37.738 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:37.738 -07 000000462 INF: FPGA: Recv ZSGSRD 37103
17-03-17 20:44:37.748 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:37.748 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:44:37.748 -07 000000462 INF: FPGA: Recv ZPIEZORD 33532
17-03-17 20:44:37.758 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:37.758 -07 000000482 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.956 V. Piezo Error = -7.9 V.
17-03-17 20:44:37.758 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.7 um, Read 10 ADC samples: Avg = 37105 (-177.8 uncal um), Error = 0.9 uncal um, Median = 37103 (-177.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 37099 (-177.8 uncal um), Max = 37114 (-177.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:44:37.758 -07 000000482 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37105, posNoise = 9, negNoise = 6
17-03-17 20:44:37.758 -07 000000482 INF: Z Motor: After move to -0.178686, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:44:37.758 -07 000000482 INF: Z Motor: Settle wait time = 1439 ms, measure time = 104 ms (allowed 150 ms), total time = 1543 ms
17-03-17 20:44:37.758 -07 000000482 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:44:37.808 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 20:44:37.808 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:44:37.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:44:37.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:44:37.808 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:44:37.808 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:44:37.818 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:44:37.818 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:44:37.818 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:44:37.818 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:44:37.818 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:44:37.818 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:44:37.828 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:44:37.828 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:44:37.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:44:37.878 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:44:38.078 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:44:38.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:44:38.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:44:38.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617610680, 0x0, 559484976) start.
17-03-17 20:44:38.118 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:44:38.118 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 20:44:38.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:44:38.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617610680, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:44:38.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:38.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:44:38.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:44:38.218 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:44:38.218 -07 000000482 INF: Autofocus start
17-03-17 20:44:38.218 -07 000000482 INF: MeasureProfile start
17-03-17 20:44:38.228 -07 000000482 INF: MeasureProfile done
17-03-17 20:44:38.228 -07 000000482 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 20:44:38.228 -07 000000482 INF: Autofocus finished
17-03-17 20:44:38.228 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:44:38.228 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 9 ms to get response, and 14 ms overall
17-03-17 20:44:38.238 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:44:38.438 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:44:38.438 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 20:44:38.438 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178693743531175. ----------
17-03-17 20:44:38.438 -07 000000610 INF: Cycle	42	Tile	3	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:44:38.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37477, sync = True, waitForSettling = True)
17-03-17 20:44:38.448 -07 000000610 INF: Z Motor: Moving to -0.171559 mm, started at -0.178694 mm, distance = 7.14 um
17-03-17 20:44:38.448 -07 000000610 INF: FPGA: Xmit ZDACW 37477\n [Z Motor]
17-03-17 20:44:38.448 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:44:38.458 -07 000000610 INF: FPGA: 'ZDACW 37477' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:44:38.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:44:38.458 -07 000000482 INF: FPGA: Recv ZDACR 37477
17-03-17 20:44:38.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:38.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:44:38.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:38.618 -07 000000462 INF: FPGA: Recv ZSGSRD 36001
17-03-17 20:44:38.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:44:38.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:38.628 -07 000000482 INF: FPGA: Recv ZSGSRD 35999
17-03-17 20:44:38.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:38.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:38.638 -07 000000482 INF: FPGA: Recv ZSGSRD 35993
17-03-17 20:44:38.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:38.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:38.648 -07 000000482 INF: FPGA: Recv ZSGSRD 35996
17-03-17 20:44:38.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:38.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:38.658 -07 000000482 INF: FPGA: Recv ZSGSRD 35998
17-03-17 20:44:38.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:38.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:38.668 -07 000000482 INF: FPGA: Recv ZSGSRD 35995
17-03-17 20:44:38.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:38.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:38.678 -07 000000482 INF: FPGA: Recv ZSGSRD 35997
17-03-17 20:44:38.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:38.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:38.688 -07 000000462 INF: FPGA: Recv ZSGSRD 35994
17-03-17 20:44:38.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:38.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:38.698 -07 000000462 INF: FPGA: Recv ZSGSRD 35998
17-03-17 20:44:38.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:38.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:38.708 -07 000000482 INF: FPGA: Recv ZSGSRD 35994
17-03-17 20:44:38.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:38.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:44:38.718 -07 000000462 INF: FPGA: Recv ZPIEZORD 32078
17-03-17 20:44:38.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:38.728 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.719 V. Piezo Error = -8.7 V.
17-03-17 20:44:38.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 35996 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35996 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35993 (-170.7 uncal um), Max = 36001 (-170.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:44:38.728 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35996, posNoise = 5, negNoise = 3
17-03-17 20:44:38.728 -07 000000610 INF: Z Motor: After move to -0.171559, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:44:38.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:44:38.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:44:38.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:44:38.728 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:44:38.728 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:44:38.728 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:44:38.728 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:44:38.728 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:44:38.728 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:44:38.728 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:44:38.728 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:44:38.728 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:44:38.728 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:44:38.738 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:44:38.738 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:44:38.738 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:44:38.738 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:44:38.748 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:44:38.748 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:44:38.748 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:44:38.748 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:44:38.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37654 150\n [Camera]
17-03-17 20:44:38.948 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:44:39.368 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:44:39.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:44:39.368 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:44:39.368 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:44:39.368 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 20:44:39.368 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:44:39.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:44:39.368 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:44:39.368 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:44:39.368 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 20:44:39.558 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37654 804
17-03-17 20:44:39.708 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:44:39.748 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:44:39.748 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:44:39.748 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:39.748 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:44:39.748 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:44:39.748 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:39.748 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:44:39.758 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:44:39.758 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:44:39.758 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:44:39.908 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:44:39.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:44:39.908 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:44:39.908 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:44:39.908 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 20:44:39.918 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:44:39.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:44:39.918 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:44:39.918 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:44:39.918 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 20:44:40.098 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:44:40.098 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:44:40.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37654 150' command took 2 ms to send, 1349 ms to get response, and 1355 ms overall
17-03-17 20:44:40.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:44:40.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.171569292265962. ------
17-03-17 20:44:40.108 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:44:40.108 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17769 mm
17-03-17 20:44:40.108 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:44:40.108 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:44:40.108 -07 000000462 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 20:44:40.108 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38816, sync = True, waitForSettling = False)
17-03-17 20:44:40.108 -07 000000433 INF: Z Motor: Moving to -0.177688 mm, started at -0.171569 mm, distance = -6.12 um
17-03-17 20:44:40.118 -07 000000433 INF: FPGA: Xmit ZDACW 38816\n [Z Motor]
17-03-17 20:44:40.118 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:44:40.118 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:44:40.118 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:44:40.128 -07 000000433 INF: FPGA: 'ZDACW 38816' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:44:40.128 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:44:40.138 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:40.138 -07 000000431 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:44:40.148 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:44:40.148 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 20:44:40.148 -07 000000462 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:40.148 -07 000000462 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:44:40.148 -07 000000462 INF: Y Motor: Moving 1342 steps-18
17-03-17 20:44:40.148 -07 000000502 INF: FPGA: Recv ZDACR 38816
17-03-17 20:44:40.158 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:44:40.158 -07 000000433 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 20:44:40.158 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:44:40.308 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:44:40.308 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:44:40.308 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:40.318 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:44:40.318 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:44:40.318 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:40.318 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:44:40.318 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:44:40.318 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:44:40.328 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:44:40.328 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:44:40.328 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 20:44:40.528 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:44:40.528 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:44:40.568 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:40.578 -07 000000547 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:44:40.578 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:44:40.578 -07 000000462 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:40.578 -07 000000462 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:44:40.578 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec
17-03-17 20:44:40.868 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.000345,
17-03-17 20:44:41.528 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:42.238 -07 000000502 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:44:42.238 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:44:42.238 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 700 ms to get response, and 710 ms overall
17-03-17 20:44:42.238 -07 000000462 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:42.238 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:44:42.258 -07 000000462 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:44:42.258 -07 000000462 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:44:42.258 -07 000000462 INF: Y Motor: Moved to 62.3955 after 2146 ms (table move)
17-03-17 20:44:42.258 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177688 mm (DAC = 38816)
17-03-17 20:44:42.258 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:42.268 -07 000000462 INF: FPGA: Recv ZSGSRD 36958
17-03-17 20:44:42.268 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:44:42.268 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:42.268 -07 000000502 INF: FPGA: Recv ZSGSRD 36954
17-03-17 20:44:42.278 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:42.278 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:42.278 -07 000000462 INF: FPGA: Recv ZSGSRD 36946
17-03-17 20:44:42.288 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:42.288 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:42.288 -07 000000480 INF: FPGA: Recv ZSGSRD 36953
17-03-17 20:44:42.298 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:42.298 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:42.298 -07 000000626 INF: FPGA: Recv ZSGSRD 36950
17-03-17 20:44:42.308 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:42.308 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:42.308 -07 000000431 INF: FPGA: Recv ZSGSRD 36950
17-03-17 20:44:42.318 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:42.318 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:42.318 -07 000000626 INF: FPGA: Recv ZSGSRD 36948
17-03-17 20:44:42.328 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:42.328 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:42.328 -07 000000626 INF: FPGA: Recv ZSGSRD 36947
17-03-17 20:44:42.338 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:42.338 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:42.338 -07 000000431 INF: FPGA: Recv ZSGSRD 36952
17-03-17 20:44:42.348 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:42.348 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:42.348 -07 000000438 INF: FPGA: Recv ZSGSRD 36949
17-03-17 20:44:42.358 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:44:42.358 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:44:42.358 -07 000000433 INF: FPGA: Recv ZPIEZORD 33330
17-03-17 20:44:42.368 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:42.368 -07 000000482 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.923 V. Piezo Error = -8.0 V.
17-03-17 20:44:42.368 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36951 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36950 (-176.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36946 (-176.8 uncal um), Max = 36958 (-176.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:44:42.368 -07 000000482 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36951, posNoise = 7, negNoise = 5
17-03-17 20:44:42.368 -07 000000482 INF: Z Motor: After move to -0.177688, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:44:42.368 -07 000000482 INF: Z Motor: Settle wait time = 2149 ms, measure time = 103 ms (allowed 150 ms), total time = 2252 ms
17-03-17 20:44:42.368 -07 000000482 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:44:42.418 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2304 ms
17-03-17 20:44:42.418 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:44:42.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:44:42.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:44:42.418 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:44:42.418 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:44:42.418 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:44:42.418 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:44:42.418 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:44:42.418 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:44:42.428 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:44:42.428 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:44:42.428 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:44:42.428 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:44:42.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:44:42.478 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:44:42.678 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:44:42.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:44:42.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:44:42.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) start.
17-03-17 20:44:42.718 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:44:42.718 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 20:44:42.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:44:42.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:44:42.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:42.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:44:42.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:44:42.818 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:44:42.818 -07 000000438 INF: Autofocus start
17-03-17 20:44:42.818 -07 000000438 INF: MeasureProfile start
17-03-17 20:44:42.818 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:44:42.828 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:44:42.828 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:44:42.828 -07 000000438 INF: MeasureProfile done
17-03-17 20:44:42.828 -07 000000438 INF: X=48  Z correction [um]=0.1739867
17-03-17 20:44:42.828 -07 000000438 INF: Autofocus finished
17-03-17 20:44:43.028 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:44:43.028 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:44:43.028 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.177704414861344. ----------
17-03-17 20:44:43.028 -07 000000610 INF: Cycle	42	Tile	4	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:44:43.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37367, sync = True, waitForSettling = True)
17-03-17 20:44:43.038 -07 000000610 INF: Z Motor: Moving to -0.171055 mm, started at -0.177704 mm, distance = 6.65 um
17-03-17 20:44:43.038 -07 000000610 INF: FPGA: Xmit ZDACW 37367\n [Z Motor]
17-03-17 20:44:43.038 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:44:43.048 -07 000000610 INF: FPGA: 'ZDACW 37367' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:43.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:44:43.048 -07 000000626 INF: FPGA: Recv ZDACR 37367
17-03-17 20:44:43.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:43.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:44:43.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:43.208 -07 000000502 INF: FPGA: Recv ZSGSRD 35926
17-03-17 20:44:43.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:44:43.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:43.218 -07 000000462 INF: FPGA: Recv ZSGSRD 35924
17-03-17 20:44:43.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:43.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:43.228 -07 000000480 INF: FPGA: Recv ZSGSRD 35915
17-03-17 20:44:43.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:43.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:43.238 -07 000000431 INF: FPGA: Recv ZSGSRD 35916
17-03-17 20:44:43.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:43.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:43.248 -07 000000433 INF: FPGA: Recv ZSGSRD 35916
17-03-17 20:44:43.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:43.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:43.258 -07 000000431 INF: FPGA: Recv ZSGSRD 35920
17-03-17 20:44:43.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:43.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:43.268 -07 000000431 INF: FPGA: Recv ZSGSRD 35919
17-03-17 20:44:43.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:43.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:43.278 -07 000000482 INF: FPGA: Recv ZSGSRD 35919
17-03-17 20:44:43.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:43.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:43.288 -07 000000482 INF: FPGA: Recv ZSGSRD 35915
17-03-17 20:44:43.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:43.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:43.298 -07 000000482 INF: FPGA: Recv ZSGSRD 35912
17-03-17 20:44:43.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:43.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:44:43.308 -07 000000482 INF: FPGA: Recv ZPIEZORD 31974
17-03-17 20:44:43.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:43.318 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -8.7 V.
17-03-17 20:44:43.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35918 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35918 (-170.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35912 (-170.2 uncal um), Max = 35926 (-170.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:44:43.318 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35918, posNoise = 8, negNoise = 6
17-03-17 20:44:43.318 -07 000000610 INF: Z Motor: After move to -0.171055, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:44:43.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:44:43.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:44:43.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:44:43.318 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:44:43.318 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:44:43.318 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:44:43.318 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:44:43.318 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:44:43.318 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:44:43.318 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:44:43.318 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:44:43.318 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:44:43.318 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:44:43.318 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:44:43.318 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:44:43.328 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:44:43.328 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:44:43.328 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:44:43.328 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:44:43.338 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:44:43.338 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:44:43.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37543 150\n [Camera]
17-03-17 20:44:43.538 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:44:43.958 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:44:43.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:44:43.958 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:44:43.958 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:44:43.958 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 20:44:43.958 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:44:43.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:44:43.958 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:44:43.958 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:44:43.958 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 20:44:44.148 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37543 804
17-03-17 20:44:44.298 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:44:44.358 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:44:44.358 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:44:44.358 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:44.358 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:44:44.358 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:44:44.358 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:44.368 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:44:44.368 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:44:44.368 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:44:44.368 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:44:44.498 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:44:44.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:44:44.498 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:44:44.628 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:44:44.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:44:44.628 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:44:44.638 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:44:44.638 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:44:44.638 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:44:44.638 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:44:44.688 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:44:44.688 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:44:44.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37543 150' command took 2 ms to send, 1349 ms to get response, and 1355 ms overall
17-03-17 20:44:44.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:44:44.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.171068203718905. ------
17-03-17 20:44:44.698 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:44:44.698 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17750 mm
17-03-17 20:44:44.698 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:44:44.698 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:44:44.698 -07 000000438 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 20:44:44.708 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:44:44.708 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:44:44.708 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38776, sync = True, waitForSettling = False)
17-03-17 20:44:44.708 -07 000000482 INF: Z Motor: Moving to -0.177505 mm, started at -0.171068 mm, distance = -6.44 um
17-03-17 20:44:44.708 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:44.708 -07 000000431 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:44:44.718 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:44:44.718 -07 000000438 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:44.718 -07 000000438 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:44:44.718 -07 000000438 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:44:44.718 -07 000000482 INF: FPGA: Xmit ZDACW 38776\n [Z Motor]
17-03-17 20:44:44.718 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:44:44.728 -07 000000482 INF: FPGA: 'ZDACW 38776' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:44:44.728 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:44:44.738 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:44:44.748 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:44:44.748 -07 000000626 INF: FPGA: Recv ZDACR 38776
17-03-17 20:44:44.758 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:44:44.758 -07 000000482 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 20:44:44.928 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:44:44.928 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:44:45.028 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:44:45.028 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:44:45.028 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:45.028 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:44:45.028 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:44:45.028 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:45.028 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:44:45.028 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:44:45.028 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-17 20:44:45.038 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:44:45.108 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 20:44:45.108 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:44:45.148 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:45.148 -07 000000626 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:44:45.158 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:44:45.158 -07 000000438 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:45.158 -07 000000438 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:44:45.158 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.119 mm/sec
17-03-17 20:44:46.108 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:46.108 -07 000000012 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:44:46.118 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:46.118 -07 000000438 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:46.148 -07 000000438 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:44:46.148 -07 000000438 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:44:46.148 -07 000000438 INF: Y Motor: Moved to 63.2241 after 1441 ms (table move)
17-03-17 20:44:46.148 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177505 mm (DAC = 38776)
17-03-17 20:44:46.148 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:46.148 -07 000000438 INF: FPGA: Recv ZSGSRD 36920
17-03-17 20:44:46.158 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:44:46.158 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:46.158 -07 000000482 INF: FPGA: Recv ZSGSRD 36918
17-03-17 20:44:46.168 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:46.168 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:46.168 -07 000000482 INF: FPGA: Recv ZSGSRD 36917
17-03-17 20:44:46.178 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:46.178 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:46.178 -07 000000438 INF: FPGA: Recv ZSGSRD 36931
17-03-17 20:44:46.188 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:46.188 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:46.188 -07 000000438 INF: FPGA: Recv ZSGSRD 36924
17-03-17 20:44:46.198 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:46.198 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:46.198 -07 000000438 INF: FPGA: Recv ZSGSRD 36922
17-03-17 20:44:46.208 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:46.208 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:46.208 -07 000000012 INF: FPGA: Recv ZSGSRD 36921
17-03-17 20:44:46.218 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:46.228 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:46.228 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.99219,
17-03-17 20:44:46.228 -07 000000431 INF: FPGA: Recv ZSGSRD 36918
17-03-17 20:44:46.238 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:44:46.258 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:46.258 -07 000000462 INF: FPGA: Recv ZSGSRD 36932
17-03-17 20:44:46.268 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:44:46.268 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:46.268 -07 000000462 INF: FPGA: Recv ZSGSRD 36924
17-03-17 20:44:46.278 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:46.298 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:44:46.298 -07 000000480 INF: FPGA: Recv ZPIEZORD 33295
17-03-17 20:44:46.308 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:44:46.308 -07 000000502 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.917 V. Piezo Error = -8.0 V.
17-03-17 20:44:46.308 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36923 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36922 (-176.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36917 (-176.6 uncal um), Max = 36932 (-176.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:44:46.308 -07 000000502 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36923, posNoise = 9, negNoise = 6
17-03-17 20:44:46.308 -07 000000502 INF: Z Motor: After move to -0.177505, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:44:46.308 -07 000000502 INF: Z Motor: Settle wait time = 1445 ms, measure time = 154 ms (allowed 150 ms), total time = 1599 ms
17-03-17 20:44:46.308 -07 000000502 INF: Z Motor: Warning: Actual position measuring time = 154 ms, longer than max expected time of 150 ms
17-03-17 20:44:46.308 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 20:44:46.308 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:44:46.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:44:46.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:44:46.308 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:44:46.308 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:44:46.308 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:44:46.308 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:44:46.318 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:44:46.318 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:44:46.318 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:44:46.318 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:44:46.328 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:44:46.328 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:44:46.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:44:46.378 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:44:46.578 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:44:46.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:44:46.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:44:46.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:44:46.618 -07 000000433 INF: FPGA: Recv @CAMSNAP 281
17-03-17 20:44:46.618 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 20:44:46.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 20:44:46.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:44:46.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:46.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:44:46.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:44:46.718 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:44:46.718 -07 000000482 INF: Autofocus start
17-03-17 20:44:46.718 -07 000000482 INF: MeasureProfile start
17-03-17 20:44:46.718 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:44:46.728 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:44:46.728 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:44:46.728 -07 000000482 INF: MeasureProfile done
17-03-17 20:44:46.728 -07 000000482 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:44:46.728 -07 000000482 INF: Autofocus finished
17-03-17 20:44:46.808 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:44:46.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:44:46.928 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:44:46.928 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:44:46.928 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.177524536921375. ----------
17-03-17 20:44:46.928 -07 000000610 INF: Cycle	42	Tile	5	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:44:46.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37309, sync = True, waitForSettling = True)
17-03-17 20:44:46.938 -07 000000610 INF: Z Motor: Moving to -0.170790 mm, started at -0.177525 mm, distance = 6.73 um
17-03-17 20:44:46.938 -07 000000610 INF: FPGA: Xmit ZDACW 37309\n [Z Motor]
17-03-17 20:44:46.938 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:44:46.948 -07 000000610 INF: FPGA: 'ZDACW 37309' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:46.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:44:46.948 -07 000000438 INF: FPGA: Recv ZDACR 37309
17-03-17 20:44:46.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:46.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:44:47.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:47.108 -07 000000502 INF: FPGA: Recv ZSGSRD 35878
17-03-17 20:44:47.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:44:47.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:47.118 -07 000000480 INF: FPGA: Recv ZSGSRD 35881
17-03-17 20:44:47.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:44:47.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:47.128 -07 000000438 INF: FPGA: Recv ZSGSRD 35875
17-03-17 20:44:47.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:47.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:47.138 -07 000000502 INF: FPGA: Recv ZSGSRD 35872
17-03-17 20:44:47.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:47.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:47.148 -07 000000462 INF: FPGA: Recv ZSGSRD 35872
17-03-17 20:44:47.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:47.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:47.158 -07 000000480 INF: FPGA: Recv ZSGSRD 35881
17-03-17 20:44:47.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:47.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:47.168 -07 000000502 INF: FPGA: Recv ZSGSRD 35869
17-03-17 20:44:47.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:47.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:47.178 -07 000000462 INF: FPGA: Recv ZSGSRD 35874
17-03-17 20:44:47.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:47.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:47.188 -07 000000502 INF: FPGA: Recv ZSGSRD 35880
17-03-17 20:44:47.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:47.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:47.198 -07 000000480 INF: FPGA: Recv ZSGSRD 35872
17-03-17 20:44:47.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:47.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:44:47.208 -07 000000475 INF: FPGA: Recv ZPIEZORD 31944
17-03-17 20:44:47.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:47.218 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.693 V. Piezo Error = -8.7 V.
17-03-17 20:44:47.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35875 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35874 (-169.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35869 (-169.9 uncal um), Max = 35881 (-170.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:44:47.218 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35875, posNoise = 6, negNoise = 6
17-03-17 20:44:47.218 -07 000000610 INF: Z Motor: After move to -0.170790, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:44:47.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:44:47.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:44:47.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:44:47.218 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:44:47.218 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:44:47.218 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:44:47.218 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:44:47.218 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:44:47.218 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:44:47.218 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:44:47.218 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:44:47.218 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:44:47.218 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:44:47.228 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:44:47.228 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:44:47.228 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:44:47.228 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:44:47.238 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:44:47.258 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:44:47.258 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-17 20:44:47.258 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 40 ms.
17-03-17 20:44:47.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37485 150\n [Camera]
17-03-17 20:44:47.458 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:44:47.878 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:44:47.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:44:47.878 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:44:47.888 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:44:47.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:44:47.888 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:44:48.008 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:44:48.008 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) start.
17-03-17 20:44:48.018 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:44:48.018 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:44:48.078 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37485 804
17-03-17 20:44:48.218 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:44:48.408 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1408252120, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:44:48.408 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:44:48.408 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:48.408 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:44:48.408 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-17 20:44:48.408 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 20:44:48.408 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:44:48.408 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:48.418 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:44:48.418 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 535 ms.
17-03-17 20:44:48.428 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:44:48.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:44:48.428 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:44:48.428 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:44:48.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:44:48.428 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:44:48.438 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:44:48.438 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:44:48.438 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:44:48.438 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 20:44:48.618 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1349
17-03-17 20:44:48.618 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:44:48.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37485 150' command took 2 ms to send, 1345 ms to get response, and 1356 ms overall
17-03-17 20:44:48.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:44:48.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170791962596809. ------
17-03-17 20:44:48.628 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:44:48.628 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17734 mm
17-03-17 20:44:48.628 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:44:48.628 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:44:48.628 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:44:48.628 -07 000000462 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 20:44:48.628 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38740, sync = True, waitForSettling = False)
17-03-17 20:44:48.628 -07 000000480 INF: Z Motor: Moving to -0.177340 mm, started at -0.170792 mm, distance = -6.55 um
17-03-17 20:44:48.638 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:48.638 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:48.638 -07 000000627 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:44:48.648 -07 000000480 INF: FPGA: Xmit ZDACW 38740\n [Z Motor]
17-03-17 20:44:48.648 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:44:48.648 -07 000000462 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:48.648 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:44:48.648 -07 000000462 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:44:48.648 -07 000000462 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:44:48.658 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:44:48.658 -07 000000480 INF: FPGA: 'ZDACW 38740' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:44:48.668 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:44:48.678 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:44:48.678 -07 000000475 INF: FPGA: Recv ZDACR 38740
17-03-17 20:44:48.688 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:44:48.688 -07 000000480 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 20:44:48.828 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:44:48.828 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:44:48.828 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:48.838 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:44:48.838 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:44:48.838 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:48.838 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:44:48.838 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:44:48.838 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:44:48.848 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:44:48.858 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:44:48.858 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:44:49.038 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 20:44:49.038 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:44:49.078 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:49.078 -07 000000502 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:44:49.088 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:44:49.088 -07 000000462 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:49.088 -07 000000462 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 20:44:49.088 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.123 mm/sec
17-03-17 20:44:50.038 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:50.038 -07 000000438 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:44:50.048 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:44:50.048 -07 000000462 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:50.068 -07 000000462 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:44:50.068 -07 000000462 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:44:50.068 -07 000000462 INF: Y Motor: Moved to 64.0571 after 1436 ms (table move)
17-03-17 20:44:50.068 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177340 mm (DAC = 38740)
17-03-17 20:44:50.068 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:50.068 -07 000000012 INF: FPGA: Recv ZSGSRD 36895
17-03-17 20:44:50.078 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:44:50.078 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:50.078 -07 000000438 INF: FPGA: Recv ZSGSRD 36895
17-03-17 20:44:50.088 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:50.088 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:50.088 -07 000000475 INF: FPGA: Recv ZSGSRD 36895
17-03-17 20:44:50.098 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:50.098 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:50.098 -07 000000438 INF: FPGA: Recv ZSGSRD 36893
17-03-17 20:44:50.108 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:50.108 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:50.108 -07 000000012 INF: FPGA: Recv ZSGSRD 36898
17-03-17 20:44:50.118 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:50.118 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:50.118 -07 000000547 INF: FPGA: Recv ZSGSRD 36899
17-03-17 20:44:50.128 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:50.128 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:50.128 -07 000000012 INF: FPGA: Recv ZSGSRD 36893
17-03-17 20:44:50.138 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:50.138 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:50.138 -07 000000547 INF: FPGA: Recv ZSGSRD 36890
17-03-17 20:44:50.148 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:50.148 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:50.148 -07 000000012 INF: FPGA: Recv ZSGSRD 36892
17-03-17 20:44:50.158 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:50.158 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:50.158 -07 000000475 INF: FPGA: Recv ZSGSRD 36893
17-03-17 20:44:50.168 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:50.168 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:44:50.168 -07 000000627 INF: FPGA: Recv ZPIEZORD 33277
17-03-17 20:44:50.178 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:50.178 -07 000000482 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.911 V. Piezo Error = -8.0 V.
17-03-17 20:44:50.178 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36894 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36894 (-176.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36890 (-176.4 uncal um), Max = 36899 (-176.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:44:50.178 -07 000000482 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36894, posNoise = 5, negNoise = 4
17-03-17 20:44:50.178 -07 000000482 INF: Z Motor: After move to -0.177340, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:44:50.178 -07 000000482 INF: Z Motor: Settle wait time = 1439 ms, measure time = 105 ms (allowed 150 ms), total time = 1544 ms
17-03-17 20:44:50.178 -07 000000482 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:44:50.228 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 20:44:50.228 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:44:50.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:44:50.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:44:50.228 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:44:50.228 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:44:50.228 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:44:50.228 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:44:50.228 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:44:50.228 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:44:50.238 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:44:50.238 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:44:50.238 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:44:50.238 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:44:50.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:44:50.288 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:44:50.488 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:44:50.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:44:50.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:44:50.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2351009040, 0x0, 559484976) start.
17-03-17 20:44:50.528 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:44:50.528 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 20:44:50.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:44:50.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2351009040, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:44:50.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:50.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:44:50.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:44:50.628 -07 000000482 INF: Autofocus start
17-03-17 20:44:50.628 -07 000000482 INF: MeasureProfile start
17-03-17 20:44:50.628 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:44:50.628 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:44:50.638 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:44:50.638 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:44:50.638 -07 000000482 INF: MeasureProfile done
17-03-17 20:44:50.638 -07 000000482 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:44:50.638 -07 000000482 INF: Autofocus finished
17-03-17 20:44:50.838 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:44:50.838 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:44:50.838 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.177338234769264. ----------
17-03-17 20:44:50.838 -07 000000610 INF: Cycle	42	Tile	6	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:44:50.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37255, sync = True, waitForSettling = True)
17-03-17 20:44:50.848 -07 000000610 INF: Z Motor: Moving to -0.170542 mm, started at -0.177338 mm, distance = 6.80 um
17-03-17 20:44:50.848 -07 000000610 INF: FPGA: Xmit ZDACW 37255\n [Z Motor]
17-03-17 20:44:50.848 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:44:50.858 -07 000000610 INF: FPGA: 'ZDACW 37255' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:50.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:44:50.858 -07 000000480 INF: FPGA: Recv ZDACR 37255
17-03-17 20:44:50.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:50.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:44:51.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:51.018 -07 000000480 INF: FPGA: Recv ZSGSRD 35834
17-03-17 20:44:51.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:44:51.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:51.028 -07 000000502 INF: FPGA: Recv ZSGSRD 35841
17-03-17 20:44:51.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:51.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:51.038 -07 000000502 INF: FPGA: Recv ZSGSRD 35840
17-03-17 20:44:51.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:51.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:51.048 -07 000000502 INF: FPGA: Recv ZSGSRD 35833
17-03-17 20:44:51.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:51.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:51.058 -07 000000502 INF: FPGA: Recv ZSGSRD 35840
17-03-17 20:44:51.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:51.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:51.068 -07 000000438 INF: FPGA: Recv ZSGSRD 35844
17-03-17 20:44:51.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:51.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:51.078 -07 000000547 INF: FPGA: Recv ZSGSRD 35834
17-03-17 20:44:51.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:51.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:51.088 -07 000000438 INF: FPGA: Recv ZSGSRD 35838
17-03-17 20:44:51.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:51.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:51.098 -07 000000547 INF: FPGA: Recv ZSGSRD 35833
17-03-17 20:44:51.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:51.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:51.108 -07 000000547 INF: FPGA: Recv ZSGSRD 35839
17-03-17 20:44:51.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:51.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:44:51.118 -07 000000547 INF: FPGA: Recv ZPIEZORD 31854
17-03-17 20:44:51.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:51.128 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.685 V. Piezo Error = -8.8 V.
17-03-17 20:44:51.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35838 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35838 (-169.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35833 (-169.6 uncal um), Max = 35844 (-169.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:44:51.128 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35838, posNoise = 6, negNoise = 5
17-03-17 20:44:51.128 -07 000000610 INF: Z Motor: After move to -0.170542, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:44:51.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:44:51.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:44:51.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:44:51.128 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:44:51.128 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:44:51.128 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:44:51.128 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:44:51.128 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:44:51.128 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:44:51.128 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:44:51.128 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:44:51.128 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:44:51.128 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:44:51.128 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:44:51.128 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:44:51.128 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:44:51.128 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:44:51.148 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:44:51.148 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:44:51.148 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:44:51.148 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:44:51.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37432 150\n [Camera]
17-03-17 20:44:51.348 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:44:51.618 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.004458,
17-03-17 20:44:51.768 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:44:51.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:44:51.768 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:44:51.768 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:44:51.768 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) start.
17-03-17 20:44:51.768 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:44:51.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:44:51.778 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:44:51.778 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:44:51.778 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1479096648, 0x0, 418435064) start.
17-03-17 20:44:51.808 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:44:51.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:44:51.958 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37432 804
17-03-17 20:44:52.108 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:44:52.158 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1479096648, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:44:52.158 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:44:52.158 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:52.158 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:44:52.158 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:44:52.158 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:44:52.158 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:52.168 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:44:52.168 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:44:52.168 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:44:52.308 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:44:52.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:44:52.318 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:44:52.318 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:44:52.318 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:44:52.318 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:44:52.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:44:52.318 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:44:52.318 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:44:52.318 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:44:52.508 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-17 20:44:52.508 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:44:52.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37432 150' command took 2 ms to send, 1342 ms to get response, and 1354 ms overall
17-03-17 20:44:52.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:44:52.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.170554266747564. ------
17-03-17 20:44:52.508 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:44:52.508 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17695 mm
17-03-17 20:44:52.508 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:44:52.508 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:44:52.508 -07 000000502 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 20:44:52.518 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:52.518 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:44:52.518 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:44:52.518 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38654, sync = True, waitForSettling = False)
17-03-17 20:44:52.518 -07 000000012 INF: Z Motor: Moving to -0.176947 mm, started at -0.170554 mm, distance = -6.39 um
17-03-17 20:44:52.518 -07 000000569 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:44:52.528 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:44:52.528 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:44:52.528 -07 000000502 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:52.528 -07 000000502 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:44:52.528 -07 000000502 INF: Y Motor: Moving 1337 steps-11
17-03-17 20:44:52.538 -07 000000012 INF: FPGA: Xmit ZDACW 38654\n [Z Motor]
17-03-17 20:44:52.538 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:44:52.548 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:44:52.548 -07 000000012 INF: FPGA: 'ZDACW 38654' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:44:52.558 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:44:52.558 -07 000000462 INF: FPGA: Recv ZDACR 38654
17-03-17 20:44:52.568 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:44:52.568 -07 000000012 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 20:44:52.718 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:44:52.718 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:44:52.718 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:52.718 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:44:52.718 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:44:52.718 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:52.718 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:44:52.718 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:44:52.728 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:44:52.728 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:44:52.728 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:44:52.728 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:44:52.918 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 20:44:52.918 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:44:52.958 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:52.958 -07 000000626 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:44:52.968 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:44:52.968 -07 000000502 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:52.968 -07 000000502 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:44:52.968 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 20:44:53.918 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:53.918 -07 000000623 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:44:53.928 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:44:53.928 -07 000000502 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:53.948 -07 000000502 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:44:53.948 -07 000000502 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:44:53.948 -07 000000502 INF: Y Motor: Moved to 64.8789 after 1433 ms (table move)
17-03-17 20:44:53.948 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176947 mm (DAC = 38654)
17-03-17 20:44:53.948 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:53.948 -07 000000623 INF: FPGA: Recv ZSGSRD 36839
17-03-17 20:44:53.958 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:44:53.958 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:53.958 -07 000000627 INF: FPGA: Recv ZSGSRD 36829
17-03-17 20:44:53.968 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:53.968 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:53.968 -07 000000569 INF: FPGA: Recv ZSGSRD 36833
17-03-17 20:44:53.978 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:53.978 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:53.978 -07 000000502 INF: FPGA: Recv ZSGSRD 36840
17-03-17 20:44:53.988 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:53.988 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:53.988 -07 000000627 INF: FPGA: Recv ZSGSRD 36840
17-03-17 20:44:53.998 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:53.998 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:53.998 -07 000000431 INF: FPGA: Recv ZSGSRD 36836
17-03-17 20:44:54.008 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:54.008 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:54.008 -07 000000626 INF: FPGA: Recv ZSGSRD 36835
17-03-17 20:44:54.018 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:54.018 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:54.018 -07 000000627 INF: FPGA: Recv ZSGSRD 36837
17-03-17 20:44:54.028 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:54.028 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:54.028 -07 000000012 INF: FPGA: Recv ZSGSRD 36833
17-03-17 20:44:54.038 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:54.038 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:54.038 -07 000000627 INF: FPGA: Recv ZSGSRD 36827
17-03-17 20:44:54.048 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:54.048 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:44:54.048 -07 000000626 INF: FPGA: Recv ZPIEZORD 33195
17-03-17 20:44:54.058 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:54.058 -07 000000475 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.898 V. Piezo Error = -8.1 V.
17-03-17 20:44:54.058 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36835 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36836 (-176.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36827 (-176.0 uncal um), Max = 36840 (-176.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:44:54.058 -07 000000475 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36835, posNoise = 5, negNoise = 8
17-03-17 20:44:54.058 -07 000000475 INF: Z Motor: After move to -0.176947, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:44:54.058 -07 000000475 INF: Z Motor: Settle wait time = 1436 ms, measure time = 103 ms (allowed 150 ms), total time = 1539 ms
17-03-17 20:44:54.058 -07 000000475 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:44:54.108 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 20:44:54.108 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:44:54.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:44:54.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:44:54.108 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:44:54.108 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:44:54.108 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:44:54.108 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:44:54.108 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:44:54.108 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:44:54.118 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:44:54.118 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:44:54.128 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:44:54.128 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:44:54.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:44:54.178 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:44:54.378 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:44:54.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:44:54.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:44:54.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2370221552, 0x0, 559484976) start.
17-03-17 20:44:54.418 -07 000000547 INF: FPGA: Recv @CAMSNAP 282
17-03-17 20:44:54.418 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 20:44:54.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 289 ms overall
17-03-17 20:44:54.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2370221552, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 20:44:54.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:54.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:44:54.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 20:44:54.528 -07 000000482 INF: Autofocus start
17-03-17 20:44:54.528 -07 000000482 INF: MeasureProfile start
17-03-17 20:44:54.528 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:44:54.528 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:44:54.538 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:44:54.538 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:44:54.538 -07 000000482 INF: MeasureProfile done
17-03-17 20:44:54.538 -07 000000482 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:44:54.538 -07 000000482 INF: Autofocus finished
17-03-17 20:44:54.738 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:44:54.738 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:44:54.738 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.1769592062529. ----------
17-03-17 20:44:54.738 -07 000000610 INF: Cycle	42	Tile	7	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:44:54.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37187, sync = True, waitForSettling = True)
17-03-17 20:44:54.748 -07 000000610 INF: Z Motor: Moving to -0.170231 mm, started at -0.176959 mm, distance = 6.73 um
17-03-17 20:44:54.748 -07 000000610 INF: FPGA: Xmit ZDACW 37187\n [Z Motor]
17-03-17 20:44:54.748 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 20:44:54.758 -07 000000610 INF: FPGA: 'ZDACW 37187' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:44:54.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:44:54.758 -07 000000502 INF: FPGA: Recv ZDACR 37187
17-03-17 20:44:54.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:54.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:44:54.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:54.918 -07 000000480 INF: FPGA: Recv ZSGSRD 35789
17-03-17 20:44:54.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:44:54.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:54.928 -07 000000627 INF: FPGA: Recv ZSGSRD 35788
17-03-17 20:44:54.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:54.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:54.938 -07 000000475 INF: FPGA: Recv ZSGSRD 35791
17-03-17 20:44:54.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:54.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:54.948 -07 000000623 INF: FPGA: Recv ZSGSRD 35794
17-03-17 20:44:54.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:54.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:54.958 -07 000000480 INF: FPGA: Recv ZSGSRD 35790
17-03-17 20:44:54.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:54.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:54.968 -07 000000627 INF: FPGA: Recv ZSGSRD 35787
17-03-17 20:44:54.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:54.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:54.978 -07 000000626 INF: FPGA: Recv ZSGSRD 35791
17-03-17 20:44:54.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:54.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:54.988 -07 000000623 INF: FPGA: Recv ZSGSRD 35787
17-03-17 20:44:54.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:54.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:54.998 -07 000000012 INF: FPGA: Recv ZSGSRD 35795
17-03-17 20:44:55.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:55.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:55.008 -07 000000431 INF: FPGA: Recv ZSGSRD 35788
17-03-17 20:44:55.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:55.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:44:55.018 -07 000000480 INF: FPGA: Recv ZPIEZORD 31753
17-03-17 20:44:55.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:55.028 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.674 V. Piezo Error = -8.9 V.
17-03-17 20:44:55.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35790 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35790 (-169.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35787 (-169.4 uncal um), Max = 35795 (-169.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:44:55.028 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35790, posNoise = 5, negNoise = 3
17-03-17 20:44:55.028 -07 000000610 INF: Z Motor: After move to -0.170231, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:44:55.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:44:55.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:44:55.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:44:55.028 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:44:55.028 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:44:55.028 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:44:55.028 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:44:55.028 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:44:55.028 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:44:55.028 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:44:55.028 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:44:55.028 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:44:55.028 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:44:55.028 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:44:55.028 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:44:55.028 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:44:55.028 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:44:55.038 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:44:55.038 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:44:55.048 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:44:55.048 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:44:55.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37364 150\n [Camera]
17-03-17 20:44:55.248 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:44:55.668 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:44:55.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:44:55.668 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:44:55.668 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:44:55.668 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:44:55.668 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:44:55.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:44:55.668 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:44:55.668 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:44:55.668 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:44:55.858 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37364 804
17-03-17 20:44:56.008 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:44:56.048 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:44:56.048 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:44:56.048 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:56.048 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:44:56.048 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:44:56.048 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:56.048 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:44:56.048 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:44:56.048 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:44:56.058 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:44:56.208 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:44:56.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:44:56.208 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:44:56.208 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:44:56.208 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 20:44:56.208 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:44:56.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:44:56.218 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:44:56.218 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:44:56.218 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 20:44:56.398 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1349
17-03-17 20:44:56.398 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:44:56.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37364 150' command took 2 ms to send, 1349 ms to get response, and 1356 ms overall
17-03-17 20:44:56.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:44:56.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.17024590456476. ------
17-03-17 20:44:56.518 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17694 mm
17-03-17 20:44:56.518 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:44:56.528 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:44:56.528 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38653, sync = True, waitForSettling = False)
17-03-17 20:44:56.528 -07 000000433 INF: Z Motor: Moving to -0.176942 mm, started at -0.170246 mm, distance = -6.70 um
17-03-17 20:44:56.528 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:44:56.528 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:44:56.528 -07 000000623 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 20:44:56.538 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:44:56.538 -07 000000433 INF: FPGA: Xmit ZDACW 38653\n [Z Motor]
17-03-17 20:44:56.538 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:44:56.548 -07 000000433 INF: FPGA: 'ZDACW 38653' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:44:56.548 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:56.548 -07 000000012 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:44:56.558 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:44:56.558 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:44:56.558 -07 000000623 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:56.558 -07 000000623 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:44:56.558 -07 000000623 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:44:56.568 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:44:56.568 -07 000000462 INF: FPGA: Recv ZDACR 38653
17-03-17 20:44:56.578 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:44:56.578 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:44:56.578 -07 000000433 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 20:44:56.608 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:44:56.608 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:44:56.608 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:56.608 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:44:56.608 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:44:56.608 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:56.618 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:44:56.618 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:44:56.618 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:44:56.618 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:44:56.758 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:44:56.758 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:44:56.808 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:44:56.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:44:56.948 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 20:44:56.948 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:44:56.978 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.011254,
17-03-17 20:44:57.008 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:57.008 -07 000000626 INF: FPGA: Recv YRDPOS 134582
17-03-17 20:44:57.018 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:44:57.018 -07 000000623 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:57.018 -07 000000623 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:44:57.018 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.147 mm/sec
17-03-17 20:44:57.968 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:44:57.968 -07 000000569 INF: FPGA: Recv YRDPOS 134582
17-03-17 20:44:57.978 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:44:57.978 -07 000000623 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:44:57.998 -07 000000623 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:44:57.998 -07 000000623 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:44:57.998 -07 000000623 INF: Y Motor: Moved to 65.7139 after 1472 ms (table move)
17-03-17 20:44:57.998 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176942 mm (DAC = 38653)
17-03-17 20:44:58.008 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:58.008 -07 000000433 INF: FPGA: Recv ZSGSRD 36843
17-03-17 20:44:58.018 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:44:58.018 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:58.018 -07 000000480 INF: FPGA: Recv ZSGSRD 36825
17-03-17 20:44:58.028 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:58.028 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:58.028 -07 000000012 INF: FPGA: Recv ZSGSRD 36835
17-03-17 20:44:58.038 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:58.038 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:58.038 -07 000000480 INF: FPGA: Recv ZSGSRD 36827
17-03-17 20:44:58.048 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:58.048 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:58.048 -07 000000462 INF: FPGA: Recv ZSGSRD 36829
17-03-17 20:44:58.058 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:58.058 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:58.058 -07 000000502 INF: FPGA: Recv ZSGSRD 36837
17-03-17 20:44:58.068 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:58.068 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:58.068 -07 000000012 INF: FPGA: Recv ZSGSRD 36834
17-03-17 20:44:58.078 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:58.078 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:58.078 -07 000000569 INF: FPGA: Recv ZSGSRD 36837
17-03-17 20:44:58.088 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:58.088 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:58.088 -07 000000480 INF: FPGA: Recv ZSGSRD 36838
17-03-17 20:44:58.098 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:58.098 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:58.098 -07 000000626 INF: FPGA: Recv ZSGSRD 36834
17-03-17 20:44:58.108 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:44:58.108 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:44:58.108 -07 000000462 INF: FPGA: Recv ZPIEZORD 33220
17-03-17 20:44:58.118 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:58.118 -07 000000438 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.898 V. Piezo Error = -8.0 V.
17-03-17 20:44:58.118 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36834 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36834 (-176.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36825 (-176.0 uncal um), Max = 36843 (-176.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:44:58.118 -07 000000438 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36834, posNoise = 9, negNoise = 9
17-03-17 20:44:58.118 -07 000000438 INF: Z Motor: After move to -0.176942, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:44:58.118 -07 000000438 INF: Z Motor: Settle wait time = 1476 ms, measure time = 111 ms (allowed 150 ms), total time = 1587 ms
17-03-17 20:44:58.118 -07 000000438 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 20:44:58.158 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1630 ms
17-03-17 20:44:58.158 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:44:58.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:44:58.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:44:58.158 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:44:58.158 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:44:58.158 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:44:58.158 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:44:58.158 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:44:58.158 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:44:58.168 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:44:58.168 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:44:58.168 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:44:58.168 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:44:58.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:44:58.218 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:44:58.418 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:44:58.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:44:58.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:44:58.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:44:58.458 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:44:58.458 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 20:44:58.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:44:58.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:44:58.538 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:44:58.538 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:44:58.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:44:58.558 -07 000000502 INF: Autofocus start
17-03-17 20:44:58.558 -07 000000502 INF: MeasureProfile start
17-03-17 20:44:58.558 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:44:58.558 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:44:58.568 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:44:58.568 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:44:58.568 -07 000000502 INF: MeasureProfile done
17-03-17 20:44:58.568 -07 000000502 INF: X=-96  Z correction [um]=-0.5732754
17-03-17 20:44:58.568 -07 000000502 INF: Autofocus finished
17-03-17 20:44:58.768 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:44:58.768 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:44:58.768 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.176952782040758. ----------
17-03-17 20:44:58.768 -07 000000610 INF: Cycle	42	Tile	8	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:44:58.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37040, sync = True, waitForSettling = True)
17-03-17 20:44:58.778 -07 000000610 INF: Z Motor: Moving to -0.169558 mm, started at -0.176953 mm, distance = 7.39 um
17-03-17 20:44:58.778 -07 000000610 INF: FPGA: Xmit ZDACW 37040\n [Z Motor]
17-03-17 20:44:58.778 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 20:44:58.788 -07 000000610 INF: FPGA: 'ZDACW 37040' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:58.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:44:58.788 -07 000000462 INF: FPGA: Recv ZDACR 37040
17-03-17 20:44:58.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:58.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:44:58.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:58.948 -07 000000627 INF: FPGA: Recv ZSGSRD 35685
17-03-17 20:44:58.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:44:58.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:58.958 -07 000000462 INF: FPGA: Recv ZSGSRD 35683
17-03-17 20:44:58.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:58.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:58.968 -07 000000627 INF: FPGA: Recv ZSGSRD 35684
17-03-17 20:44:58.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:58.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:58.978 -07 000000462 INF: FPGA: Recv ZSGSRD 35674
17-03-17 20:44:58.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:58.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:58.988 -07 000000627 INF: FPGA: Recv ZSGSRD 35684
17-03-17 20:44:58.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:58.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:58.998 -07 000000462 INF: FPGA: Recv ZSGSRD 35682
17-03-17 20:44:59.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:59.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:59.008 -07 000000462 INF: FPGA: Recv ZSGSRD 35684
17-03-17 20:44:59.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:59.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:59.018 -07 000000462 INF: FPGA: Recv ZSGSRD 35682
17-03-17 20:44:59.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:59.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:59.028 -07 000000462 INF: FPGA: Recv ZSGSRD 35685
17-03-17 20:44:59.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:59.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:44:59.038 -07 000000627 INF: FPGA: Recv ZSGSRD 35684
17-03-17 20:44:59.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:59.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:44:59.048 -07 000000627 INF: FPGA: Recv ZPIEZORD 31677
17-03-17 20:44:59.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:44:59.058 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.652 V. Piezo Error = -8.8 V.
17-03-17 20:44:59.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35683 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35684 (-168.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35674 (-168.6 uncal um), Max = 35685 (-168.7 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:44:59.058 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35683, posNoise = 2, negNoise = 9
17-03-17 20:44:59.058 -07 000000610 INF: Z Motor: After move to -0.169558, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:44:59.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:44:59.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:44:59.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:44:59.058 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:44:59.058 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:44:59.058 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:44:59.058 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:44:59.058 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:44:59.058 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:44:59.058 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:44:59.058 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:44:59.058 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:44:59.058 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:44:59.058 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:44:59.058 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:44:59.058 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:44:59.058 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:44:59.068 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:44:59.068 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:44:59.068 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:44:59.068 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:44:59.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37217 150\n [Camera]
17-03-17 20:44:59.278 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:44:59.698 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:44:59.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:44:59.698 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:44:59.698 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:44:59.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:44:59.698 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:44:59.698 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:44:59.698 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:44:59.708 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:44:59.708 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:44:59.888 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37217 804
17-03-17 20:45:00.038 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:45:00.078 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:45:00.078 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:45:00.078 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:00.078 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:45:00.078 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:45:00.078 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:00.088 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:00.088 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:00.088 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:45:00.088 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:45:00.238 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:45:00.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:45:00.238 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:00.238 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:45:00.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:45:00.238 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:00.358 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:00.358 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 20:45:00.368 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:00.368 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 20:45:00.428 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-17 20:45:00.428 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:45:00.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37217 150' command took 2 ms to send, 1346 ms to get response, and 1354 ms overall
17-03-17 20:45:00.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:45:00.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.169558513865591. ------
17-03-17 20:45:00.438 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:00.438 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17597 mm
17-03-17 20:45:00.438 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:45:00.438 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:45:00.438 -07 000000626 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 20:45:00.438 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:00.438 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38440, sync = True, waitForSettling = False)
17-03-17 20:45:00.438 -07 000000480 INF: Z Motor: Moving to -0.175967 mm, started at -0.169559 mm, distance = -6.41 um
17-03-17 20:45:00.448 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:45:00.448 -07 000000480 INF: FPGA: Xmit ZDACW 38440\n [Z Motor]
17-03-17 20:45:00.448 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 20:45:00.458 -07 000000480 INF: FPGA: 'ZDACW 38440' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:45:00.458 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:00.458 -07 000000623 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:45:00.468 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:45:00.468 -07 000000626 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:00.468 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:45:00.468 -07 000000626 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:45:00.468 -07 000000626 INF: Y Motor: Moving 1341 steps-18
17-03-17 20:45:00.478 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:00.478 -07 000000475 INF: FPGA: Recv ZDACR 38440
17-03-17 20:45:00.488 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:45:00.488 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:45:00.488 -07 000000480 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 20:45:00.668 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:45:00.668 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:45:00.758 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 20:45:00.758 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:45:00.758 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:00.758 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:45:00.758 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:45:00.758 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:00.758 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:00.758 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:00.758 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 20:45:00.768 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 524 ms.
17-03-17 20:45:00.858 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 20:45:00.858 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 20:45:00.898 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:00.908 -07 000000438 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:45:00.908 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:45:00.908 -07 000000626 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:00.908 -07 000000626 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:45:00.908 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.140 mm/sec
17-03-17 20:45:01.808 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:45:01.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:45:01.858 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:01.858 -07 000000569 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:45:01.868 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:01.868 -07 000000626 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:01.888 -07 000000626 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:45:01.888 -07 000000626 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:45:01.888 -07 000000626 INF: Y Motor: Moved to 66.5391 after 1448 ms (table move)
17-03-17 20:45:01.888 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175967 mm (DAC = 38440)
17-03-17 20:45:01.888 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:01.898 -07 000000012 INF: FPGA: Recv ZSGSRD 36693
17-03-17 20:45:01.898 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:45:01.898 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:01.898 -07 000000012 INF: FPGA: Recv ZSGSRD 36678
17-03-17 20:45:01.908 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:01.908 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:01.908 -07 000000012 INF: FPGA: Recv ZSGSRD 36684
17-03-17 20:45:01.918 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:01.918 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:01.918 -07 000000012 INF: FPGA: Recv ZSGSRD 36680
17-03-17 20:45:01.928 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:01.928 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:01.928 -07 000000475 INF: FPGA: Recv ZSGSRD 36681
17-03-17 20:45:01.938 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:01.938 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:01.938 -07 000000480 INF: FPGA: Recv ZSGSRD 36687
17-03-17 20:45:01.948 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:01.948 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:01.948 -07 000000480 INF: FPGA: Recv ZSGSRD 36675
17-03-17 20:45:01.958 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:01.958 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:01.958 -07 000000475 INF: FPGA: Recv ZSGSRD 36679
17-03-17 20:45:01.968 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:01.968 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:01.968 -07 000000475 INF: FPGA: Recv ZSGSRD 36677
17-03-17 20:45:01.978 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:01.978 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:01.978 -07 000000475 INF: FPGA: Recv ZSGSRD 36684
17-03-17 20:45:01.988 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:01.988 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:01.988 -07 000000475 INF: FPGA: Recv ZPIEZORD 32989
17-03-17 20:45:01.998 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:01.998 -07 000000627 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.866 V. Piezo Error = -8.2 V.
17-03-17 20:45:01.998 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36682 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36680 (-175.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36675 (-175.0 uncal um), Max = 36693 (-175.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:45:01.998 -07 000000627 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36682, posNoise = 11, negNoise = 7
17-03-17 20:45:01.998 -07 000000627 INF: Z Motor: After move to -0.175967, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:01.998 -07 000000627 INF: Z Motor: Settle wait time = 1451 ms, measure time = 103 ms (allowed 150 ms), total time = 1554 ms
17-03-17 20:45:01.998 -07 000000627 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:45:02.048 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 20:45:02.048 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:45:02.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:02.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:02.048 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:02.048 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:02.048 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:45:02.048 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:02.048 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:02.048 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:45:02.058 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:45:02.058 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:45:02.068 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:45:02.068 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:45:02.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:45:02.118 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:45:02.308 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:45:02.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:45:02.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:45:02.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606601088, 0x0, 559484976) start.
17-03-17 20:45:02.348 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.037119,
17-03-17 20:45:02.348 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:45:02.348 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 20:45:02.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 3 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 20:45:02.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606601088, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:45:02.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:02.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:45:02.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:45:02.458 -07 000000627 INF: Autofocus start
17-03-17 20:45:02.458 -07 000000627 INF: MeasureProfile start
17-03-17 20:45:02.458 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:02.458 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:02.468 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:45:02.468 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:45:02.468 -07 000000627 INF: MeasureProfile done
17-03-17 20:45:02.468 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:45:02.468 -07 000000627 INF: Autofocus finished
17-03-17 20:45:02.668 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:45:02.668 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:45:02.668 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.17597630179521. ----------
17-03-17 20:45:02.678 -07 000000610 INF: Cycle	42	Tile	9	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:45:02.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36955, sync = True, waitForSettling = True)
17-03-17 20:45:02.678 -07 000000610 INF: Z Motor: Moving to -0.169169 mm, started at -0.175976 mm, distance = 6.81 um
17-03-17 20:45:02.678 -07 000000610 INF: FPGA: Xmit ZDACW 36955\n [Z Motor]
17-03-17 20:45:02.678 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:45:02.688 -07 000000610 INF: FPGA: 'ZDACW 36955' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:45:02.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:02.688 -07 000000627 INF: FPGA: Recv ZDACR 36955
17-03-17 20:45:02.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:02.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:45:02.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:02.848 -07 000000627 INF: FPGA: Recv ZSGSRD 35625
17-03-17 20:45:02.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:02.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:02.858 -07 000000438 INF: FPGA: Recv ZSGSRD 35619
17-03-17 20:45:02.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:02.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:02.878 -07 000000623 INF: FPGA: Recv ZSGSRD 35630
17-03-17 20:45:02.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:45:02.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:02.898 -07 000000012 INF: FPGA: Recv ZSGSRD 35627
17-03-17 20:45:02.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:45:02.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:02.918 -07 000000569 INF: FPGA: Recv ZSGSRD 35626
17-03-17 20:45:02.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:45:02.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:02.928 -07 000000569 INF: FPGA: Recv ZSGSRD 35623
17-03-17 20:45:02.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:02.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:02.958 -07 000000012 INF: FPGA: Recv ZSGSRD 35622
17-03-17 20:45:02.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:45:02.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:02.968 -07 000000626 INF: FPGA: Recv ZSGSRD 35619
17-03-17 20:45:02.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:02.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:02.978 -07 000000626 INF: FPGA: Recv ZSGSRD 35626
17-03-17 20:45:02.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:02.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:02.988 -07 000000626 INF: FPGA: Recv ZSGSRD 35626
17-03-17 20:45:02.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:02.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:02.998 -07 000000626 INF: FPGA: Recv ZPIEZORD 31569
17-03-17 20:45:03.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:03.008 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.639 V. Piezo Error = -9.0 V.
17-03-17 20:45:03.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35624 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35626 (-168.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35619 (-168.3 uncal um), Max = 35630 (-168.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:45:03.008 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35624, posNoise = 6, negNoise = 5
17-03-17 20:45:03.008 -07 000000610 INF: Z Motor: After move to -0.169169, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:03.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-17 20:45:03.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:03.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:03.008 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:03.008 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:03.008 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:45:03.008 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:03.008 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:45:03.008 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:45:03.008 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:03.008 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:45:03.008 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:45:03.008 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:45:03.018 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:45:03.018 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:45:03.018 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:45:03.018 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:45:03.028 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:45:03.028 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:45:03.028 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:45:03.028 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:45:03.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37132 150\n [Camera]
17-03-17 20:45:03.228 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:45:03.648 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:45:03.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:45:03.648 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:03.648 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:45:03.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:45:03.648 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:03.658 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:03.658 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:45:03.658 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:03.658 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:45:03.838 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37132 804
17-03-17 20:45:03.988 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:45:04.028 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:45:04.028 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:45:04.028 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:04.028 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 20:45:04.028 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:45:04.028 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:04.028 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:45:04.028 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:45:04.028 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:45:04.038 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:45:04.188 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:45:04.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:45:04.198 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:04.198 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:45:04.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:45:04.198 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:04.198 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:45:04.198 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:04.198 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:04.198 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:45:04.388 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-17 20:45:04.388 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:45:04.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37132 150' command took 2 ms to send, 1351 ms to get response, and 1354 ms overall
17-03-17 20:45:04.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:45:04.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.169179485349227. ------
17-03-17 20:45:04.388 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:04.388 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17593 mm
17-03-17 20:45:04.388 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:45:04.388 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:04.388 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:45:04.398 -07 000000626 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 20:45:04.398 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:04.398 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:45:04.398 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38432, sync = True, waitForSettling = False)
17-03-17 20:45:04.398 -07 000000627 INF: Z Motor: Moving to -0.175930 mm, started at -0.169179 mm, distance = -6.75 um
17-03-17 20:45:04.398 -07 000000438 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:45:04.408 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:04.408 -07 000000626 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:04.408 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:45:04.408 -07 000000626 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:45:04.408 -07 000000626 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:45:04.418 -07 000000627 INF: FPGA: Xmit ZDACW 38432\n [Z Motor]
17-03-17 20:45:04.418 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:45:04.428 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:45:04.428 -07 000000627 INF: FPGA: 'ZDACW 38432' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:45:04.438 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:04.438 -07 000000431 INF: FPGA: Recv ZDACR 38432
17-03-17 20:45:04.448 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:45:04.448 -07 000000627 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 20:45:04.598 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:45:04.598 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:45:04.598 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:04.598 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:45:04.598 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:45:04.598 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:04.598 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:04.598 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:04.598 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:45:04.608 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:45:04.608 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:45:04.608 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:45:04.808 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 20:45:04.808 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 397 ms overall
17-03-17 20:45:04.838 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:04.848 -07 000000431 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:45:04.848 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:45:04.848 -07 000000626 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:04.848 -07 000000626 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 20:45:04.848 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 20:45:05.798 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:05.798 -07 000000547 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:45:05.808 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:05.808 -07 000000626 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:05.828 -07 000000626 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:45:05.828 -07 000000626 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:45:05.828 -07 000000626 INF: Y Motor: Moved to 67.3721 after 1434 ms (table move)
17-03-17 20:45:05.828 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175930 mm (DAC = 38432)
17-03-17 20:45:05.828 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:05.838 -07 000000626 INF: FPGA: Recv ZSGSRD 36675
17-03-17 20:45:05.838 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:45:05.838 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:05.838 -07 000000626 INF: FPGA: Recv ZSGSRD 36686
17-03-17 20:45:05.848 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:05.848 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:05.848 -07 000000012 INF: FPGA: Recv ZSGSRD 36668
17-03-17 20:45:05.858 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:05.858 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:05.858 -07 000000547 INF: FPGA: Recv ZSGSRD 36673
17-03-17 20:45:05.868 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:05.868 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:05.868 -07 000000627 INF: FPGA: Recv ZSGSRD 36670
17-03-17 20:45:05.878 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:05.878 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:05.878 -07 000000627 INF: FPGA: Recv ZSGSRD 36672
17-03-17 20:45:05.888 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:05.888 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:05.888 -07 000000431 INF: FPGA: Recv ZSGSRD 36679
17-03-17 20:45:05.898 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:05.898 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:05.898 -07 000000431 INF: FPGA: Recv ZSGSRD 36679
17-03-17 20:45:05.908 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:05.908 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:05.908 -07 000000502 INF: FPGA: Recv ZSGSRD 36680
17-03-17 20:45:05.918 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:05.918 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:05.918 -07 000000502 INF: FPGA: Recv ZSGSRD 36678
17-03-17 20:45:05.928 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:05.928 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:05.928 -07 000000502 INF: FPGA: Recv ZPIEZORD 32995
17-03-17 20:45:05.938 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:05.938 -07 000000433 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.864 V. Piezo Error = -8.2 V.
17-03-17 20:45:05.938 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36676 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36676 (-175.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36668 (-175.0 uncal um), Max = 36686 (-175.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:45:05.938 -07 000000433 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36676, posNoise = 10, negNoise = 8
17-03-17 20:45:05.938 -07 000000433 INF: Z Motor: After move to -0.175930, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:05.938 -07 000000433 INF: Z Motor: Settle wait time = 1436 ms, measure time = 103 ms (allowed 150 ms), total time = 1539 ms
17-03-17 20:45:05.938 -07 000000433 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:45:05.988 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 20:45:05.988 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:45:05.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:05.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:05.988 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:05.988 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:45:05.988 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:05.988 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:05.988 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:05.988 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:45:05.998 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:45:05.998 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:45:06.008 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 20:45:06.008 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 20:45:06.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:45:06.048 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:45:06.248 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:45:06.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:45:06.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:45:06.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:45:06.288 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:45:06.288 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 20:45:06.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 20:45:06.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 20:45:06.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:06.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:45:06.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 20:45:06.388 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:06.388 -07 000000627 INF: Autofocus start
17-03-17 20:45:06.388 -07 000000627 INF: MeasureProfile start
17-03-17 20:45:06.388 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:06.398 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:45:06.398 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:45:06.398 -07 000000627 INF: MeasureProfile done
17-03-17 20:45:06.398 -07 000000627 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:45:06.398 -07 000000627 INF: Autofocus finished
17-03-17 20:45:06.598 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:45:06.598 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:45:06.598 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.17593775652236. ----------
17-03-17 20:45:06.598 -07 000000610 INF: Cycle	42	Tile	10	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:45:06.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36965, sync = True, waitForSettling = True)
17-03-17 20:45:06.608 -07 000000610 INF: Z Motor: Moving to -0.169215 mm, started at -0.175938 mm, distance = 6.72 um
17-03-17 20:45:06.608 -07 000000610 INF: FPGA: Xmit ZDACW 36965\n [Z Motor]
17-03-17 20:45:06.608 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:45:06.618 -07 000000610 INF: FPGA: 'ZDACW 36965' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:45:06.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:06.618 -07 000000569 INF: FPGA: Recv ZDACR 36965
17-03-17 20:45:06.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:06.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:45:06.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:06.778 -07 000000569 INF: FPGA: Recv ZSGSRD 35638
17-03-17 20:45:06.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:06.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:06.788 -07 000000626 INF: FPGA: Recv ZSGSRD 35633
17-03-17 20:45:06.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:06.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:06.798 -07 000000569 INF: FPGA: Recv ZSGSRD 35628
17-03-17 20:45:06.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:06.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:06.808 -07 000000627 INF: FPGA: Recv ZSGSRD 35622
17-03-17 20:45:06.808 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:45:06.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:45:06.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:06.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:06.818 -07 000000623 INF: FPGA: Recv ZSGSRD 35631
17-03-17 20:45:06.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:06.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:06.828 -07 000000547 INF: FPGA: Recv ZSGSRD 35637
17-03-17 20:45:06.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:06.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:06.838 -07 000000623 INF: FPGA: Recv ZSGSRD 35629
17-03-17 20:45:06.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:06.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:06.848 -07 000000431 INF: FPGA: Recv ZSGSRD 35632
17-03-17 20:45:06.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:06.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:06.858 -07 000000623 INF: FPGA: Recv ZSGSRD 35630
17-03-17 20:45:06.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:06.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:06.868 -07 000000431 INF: FPGA: Recv ZSGSRD 35631
17-03-17 20:45:06.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:06.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:06.878 -07 000000431 INF: FPGA: Recv ZPIEZORD 31612
17-03-17 20:45:06.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:06.888 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.640 V. Piezo Error = -8.9 V.
17-03-17 20:45:06.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35631 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35631 (-168.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35622 (-168.3 uncal um), Max = 35638 (-168.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:45:06.888 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35631, posNoise = 7, negNoise = 9
17-03-17 20:45:06.888 -07 000000610 INF: Z Motor: After move to -0.169215, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:06.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:45:06.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:06.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:06.888 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:06.888 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:06.888 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:45:06.888 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:45:06.888 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:45:06.888 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:06.888 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:45:06.888 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:45:06.888 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:06.888 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:45:06.898 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:45:06.898 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:45:06.898 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:45:06.898 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:45:06.908 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 20:45:06.908 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:45:06.908 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 20:45:06.908 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:45:06.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37142 150\n [Camera]
17-03-17 20:45:07.108 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:45:07.528 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:45:07.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:45:07.528 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:07.528 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:07.528 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:45:07.528 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:45:07.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:45:07.528 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:07.528 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:07.528 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:45:07.708 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.028963,
17-03-17 20:45:07.728 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37142 806
17-03-17 20:45:07.868 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:45:07.908 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:45:07.908 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:45:07.908 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:07.908 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:45:07.908 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:45:07.908 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:07.908 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:07.918 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:45:07.918 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:45:07.918 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:45:08.068 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:45:08.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:45:08.078 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:08.188 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:45:08.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:45:08.188 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:08.188 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:08.188 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:45:08.188 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:08.188 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:45:08.268 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:45:08.268 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:45:08.268 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37142 150' command took 2 ms to send, 1350 ms to get response, and 1355 ms overall
17-03-17 20:45:08.268 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:45:08.268 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.16922445483422. ------
17-03-17 20:45:08.268 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17560 mm
17-03-17 20:45:08.268 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:45:08.268 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:45:08.268 -07 000000623 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 20:45:08.268 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38359, sync = True, waitForSettling = False)
17-03-17 20:45:08.268 -07 000000626 INF: Z Motor: Moving to -0.175596 mm, started at -0.169224 mm, distance = -6.37 um
17-03-17 20:45:08.278 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:08.278 -07 000000462 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:45:08.288 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:08.288 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:45:08.288 -07 000000623 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:08.288 -07 000000623 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:45:08.288 -07 000000623 INF: Y Motor: Moving 1345 steps-22
17-03-17 20:45:08.288 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:08.298 -07 000000626 INF: FPGA: Xmit ZDACW 38359\n [Z Motor]
17-03-17 20:45:08.298 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:45:08.298 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:45:08.308 -07 000000626 INF: FPGA: 'ZDACW 38359' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:45:08.318 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:45:08.328 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:45:08.338 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:08.338 -07 000000569 INF: FPGA: Recv ZDACR 38359
17-03-17 20:45:08.348 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 20:45:08.348 -07 000000626 INF: Z Motor: MoveAbsStepped took 71 ms (did NOT wait for settling yet))
17-03-17 20:45:08.528 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:45:08.528 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 230 ms overall
17-03-17 20:45:08.578 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:45:08.578 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:45:08.578 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:08.578 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:08.578 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:45:08.578 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:45:08.578 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:08.588 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:08.588 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 20:45:08.588 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:45:08.688 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 20:45:08.688 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 406 ms overall
17-03-17 20:45:08.728 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:08.728 -07 000000431 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:45:08.738 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:45:08.738 -07 000000623 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:08.738 -07 000000623 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:45:08.738 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.841 mm, average velocity = 2.065 mm/sec
17-03-17 20:45:09.688 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:09.688 -07 000000482 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:45:09.698 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:09.698 -07 000000623 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:09.718 -07 000000623 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:45:09.718 -07 000000623 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:45:09.718 -07 000000623 INF: Y Motor: Moved to 68.2051 after 1443 ms (table move)
17-03-17 20:45:09.718 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175596 mm (DAC = 38359)
17-03-17 20:45:09.718 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:09.718 -07 000000438 INF: FPGA: Recv ZSGSRD 36619
17-03-17 20:45:09.728 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:45:09.728 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:09.728 -07 000000623 INF: FPGA: Recv ZSGSRD 36619
17-03-17 20:45:09.738 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:09.738 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:09.738 -07 000000623 INF: FPGA: Recv ZSGSRD 36628
17-03-17 20:45:09.748 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:09.748 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:09.748 -07 000000626 INF: FPGA: Recv ZSGSRD 36631
17-03-17 20:45:09.758 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:09.758 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:09.758 -07 000000569 INF: FPGA: Recv ZSGSRD 36626
17-03-17 20:45:09.768 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:09.768 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:09.768 -07 000000626 INF: FPGA: Recv ZSGSRD 36624
17-03-17 20:45:09.778 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:09.778 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:09.778 -07 000000431 INF: FPGA: Recv ZSGSRD 36630
17-03-17 20:45:09.788 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:09.788 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:09.788 -07 000000502 INF: FPGA: Recv ZSGSRD 36617
17-03-17 20:45:09.798 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:09.798 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:09.798 -07 000000431 INF: FPGA: Recv ZSGSRD 36623
17-03-17 20:45:09.808 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:09.808 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:09.808 -07 000000438 INF: FPGA: Recv ZSGSRD 36622
17-03-17 20:45:09.818 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:09.818 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:09.818 -07 000000569 INF: FPGA: Recv ZPIEZORD 32958
17-03-17 20:45:09.828 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:09.828 -07 000000547 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.853 V. Piezo Error = -8.1 V.
17-03-17 20:45:09.828 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36624 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36624 (-174.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36617 (-174.7 uncal um), Max = 36631 (-174.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:45:09.828 -07 000000547 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36624, posNoise = 7, negNoise = 7
17-03-17 20:45:09.828 -07 000000547 INF: Z Motor: After move to -0.175596, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:09.828 -07 000000547 INF: Z Motor: Settle wait time = 1446 ms, measure time = 105 ms (allowed 150 ms), total time = 1551 ms
17-03-17 20:45:09.828 -07 000000547 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:45:09.878 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 20:45:09.878 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:45:09.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:09.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:09.878 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:09.878 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:09.878 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:45:09.878 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:09.878 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:09.878 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:45:09.888 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:45:09.888 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:45:09.898 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:45:09.898 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:45:09.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:45:09.948 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:45:10.148 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:45:10.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:45:10.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:45:10.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 20:45:10.188 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:45:10.188 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 20:45:10.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 286 ms overall
17-03-17 20:45:10.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:45:10.278 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:10.278 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:45:10.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:45:10.288 -07 000000623 INF: Autofocus start
17-03-17 20:45:10.288 -07 000000623 INF: MeasureProfile start
17-03-17 20:45:10.288 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:10.288 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:10.298 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:45:10.298 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:45:10.298 -07 000000623 INF: MeasureProfile done
17-03-17 20:45:10.298 -07 000000623 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 20:45:10.298 -07 000000623 INF: Autofocus finished
17-03-17 20:45:10.498 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:45:10.498 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 20:45:10.498 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175603697490988. ----------
17-03-17 20:45:10.498 -07 000000610 INF: Cycle	42	Tile	11	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:45:10.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36839, sync = True, waitForSettling = True)
17-03-17 20:45:10.508 -07 000000610 INF: Z Motor: Moving to -0.168638 mm, started at -0.175604 mm, distance = 6.97 um
17-03-17 20:45:10.508 -07 000000610 INF: FPGA: Xmit ZDACW 36839\n [Z Motor]
17-03-17 20:45:10.508 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:45:10.518 -07 000000610 INF: FPGA: 'ZDACW 36839' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:45:10.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:10.518 -07 000000623 INF: FPGA: Recv ZDACR 36839
17-03-17 20:45:10.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:10.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:45:10.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:10.678 -07 000000547 INF: FPGA: Recv ZSGSRD 35545
17-03-17 20:45:10.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:10.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:10.688 -07 000000547 INF: FPGA: Recv ZSGSRD 35539
17-03-17 20:45:10.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:10.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:10.698 -07 000000623 INF: FPGA: Recv ZSGSRD 35543
17-03-17 20:45:10.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:10.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:10.708 -07 000000547 INF: FPGA: Recv ZSGSRD 35545
17-03-17 20:45:10.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:10.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:10.718 -07 000000547 INF: FPGA: Recv ZSGSRD 35538
17-03-17 20:45:10.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:10.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:10.728 -07 000000626 INF: FPGA: Recv ZSGSRD 35541
17-03-17 20:45:10.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:10.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:10.738 -07 000000623 INF: FPGA: Recv ZSGSRD 35539
17-03-17 20:45:10.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:10.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:10.748 -07 000000626 INF: FPGA: Recv ZSGSRD 35545
17-03-17 20:45:10.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:10.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:10.758 -07 000000462 INF: FPGA: Recv ZSGSRD 35542
17-03-17 20:45:10.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:10.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:10.768 -07 000000626 INF: FPGA: Recv ZSGSRD 35537
17-03-17 20:45:10.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:10.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:10.778 -07 000000569 INF: FPGA: Recv ZPIEZORD 31514
17-03-17 20:45:10.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:10.788 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -8.9 V.
17-03-17 20:45:10.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35541 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35542 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35537 (-167.7 uncal um), Max = 35545 (-167.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:45:10.788 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35541, posNoise = 4, negNoise = 4
17-03-17 20:45:10.788 -07 000000610 INF: Z Motor: After move to -0.168638, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:10.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:45:10.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:10.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:10.788 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:45:10.788 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:10.788 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:10.788 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:45:10.788 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:45:10.788 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:10.788 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:45:10.788 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:10.788 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:45:10.788 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:45:10.788 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:45:10.788 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:45:10.798 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:45:10.798 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:45:10.798 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:45:10.798 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:45:10.808 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:45:10.808 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:45:10.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 37015 150\n [Camera]
17-03-17 20:45:11.008 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 20:45:11.428 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:45:11.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:45:11.428 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:11.428 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:45:11.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:45:11.428 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:11.428 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:11.438 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 20:45:11.438 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:11.438 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 20:45:11.618 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37015 804
17-03-17 20:45:11.768 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:45:11.808 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:45:11.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:45:11.818 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:45:11.818 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:45:11.818 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:11.818 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:11.818 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:45:11.818 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:45:11.828 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:11.828 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:45:11.828 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:45:11.828 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:45:11.968 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:45:11.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:45:11.968 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:12.078 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:45:12.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:45:12.088 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:12.088 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:12.088 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:45:12.088 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:12.088 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 20:45:12.158 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:45:12.158 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:45:12.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 37015 150' command took 2 ms to send, 1347 ms to get response, and 1354 ms overall
17-03-17 20:45:12.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:45:12.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.168646275741461. ------
17-03-17 20:45:12.168 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:12.168 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17528 mm
17-03-17 20:45:12.168 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:45:12.168 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:12.168 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38289, sync = True, waitForSettling = False)
17-03-17 20:45:12.168 -07 000000569 INF: Z Motor: Moving to -0.175276 mm, started at -0.168646 mm, distance = -6.63 um
17-03-17 20:45:12.168 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:45:12.168 -07 000000547 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 20:45:12.178 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:45:12.178 -07 000000569 INF: FPGA: Xmit ZDACW 38289\n [Z Motor]
17-03-17 20:45:12.178 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:45:12.188 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:12.188 -07 000000569 INF: FPGA: 'ZDACW 38289' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:45:12.188 -07 000000623 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:45:12.198 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:45:12.198 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:45:12.198 -07 000000547 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:12.198 -07 000000547 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:45:12.198 -07 000000547 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:45:12.208 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:12.208 -07 000000480 INF: FPGA: Recv ZDACR 38289
17-03-17 20:45:12.218 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:45:12.218 -07 000000569 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:45:12.218 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:45:12.398 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:45:12.398 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:45:12.478 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:45:12.478 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:45:12.478 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:12.478 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 20:45:12.478 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:45:12.478 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:12.488 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:12.488 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 20:45:12.488 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:45:12.488 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:45:12.588 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 20:45:12.588 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 20:45:12.628 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:12.628 -07 000000431 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:45:12.638 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:45:12.638 -07 000000547 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:12.638 -07 000000547 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:45:12.638 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.131 mm/sec
17-03-17 20:45:13.068 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.009895,
17-03-17 20:45:13.588 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:13.588 -07 000000431 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:45:13.598 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:13.598 -07 000000547 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:13.618 -07 000000547 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:45:13.618 -07 000000547 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:45:13.618 -07 000000547 INF: Y Motor: Moved to 69.0273 after 1445 ms (table move)
17-03-17 20:45:13.618 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175276 mm (DAC = 38289)
17-03-17 20:45:13.618 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:13.628 -07 000000547 INF: FPGA: Recv ZSGSRD 36579
17-03-17 20:45:13.628 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:45:13.628 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:13.628 -07 000000547 INF: FPGA: Recv ZSGSRD 36577
17-03-17 20:45:13.638 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:13.638 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:13.638 -07 000000626 INF: FPGA: Recv ZSGSRD 36573
17-03-17 20:45:13.648 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:13.648 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:13.648 -07 000000502 INF: FPGA: Recv ZSGSRD 36581
17-03-17 20:45:13.658 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:13.658 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:13.658 -07 000000502 INF: FPGA: Recv ZSGSRD 36576
17-03-17 20:45:13.668 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:13.668 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:13.668 -07 000000475 INF: FPGA: Recv ZSGSRD 36575
17-03-17 20:45:13.678 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:13.678 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:13.678 -07 000000547 INF: FPGA: Recv ZSGSRD 36573
17-03-17 20:45:13.688 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:13.708 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:13.708 -07 000000480 INF: FPGA: Recv ZSGSRD 36568
17-03-17 20:45:13.718 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:45:13.718 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:13.718 -07 000000480 INF: FPGA: Recv ZSGSRD 36573
17-03-17 20:45:13.728 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:13.738 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:13.738 -07 000000626 INF: FPGA: Recv ZSGSRD 36574
17-03-17 20:45:13.748 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:45:13.748 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:13.748 -07 000000626 INF: FPGA: Recv ZPIEZORD 32870
17-03-17 20:45:13.758 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:13.758 -07 000000482 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.843 V. Piezo Error = -8.2 V.
17-03-17 20:45:13.758 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36575 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36574 (-174.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36568 (-174.4 uncal um), Max = 36581 (-174.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:45:13.758 -07 000000482 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36575, posNoise = 6, negNoise = 7
17-03-17 20:45:13.758 -07 000000482 INF: Z Motor: After move to -0.175276, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:13.758 -07 000000482 INF: Z Motor: Settle wait time = 1449 ms, measure time = 134 ms (allowed 150 ms), total time = 1583 ms
17-03-17 20:45:13.758 -07 000000482 INF: Z Motor: Waiting extra 16 ms after reading position to reach expected total of 150 ms
17-03-17 20:45:13.778 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 20:45:13.778 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:45:13.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:13.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:13.778 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:13.778 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:13.778 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:45:13.778 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:13.778 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:13.778 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:45:13.778 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:45:13.788 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:45:13.798 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:45:13.798 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:45:13.798 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:45:13.848 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:45:14.048 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:45:14.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:45:14.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:45:14.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2350877912, 0x0, 559484976) start.
17-03-17 20:45:14.088 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:45:14.088 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 20:45:14.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:45:14.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2350877912, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:45:14.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:14.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:45:14.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:45:14.188 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:14.188 -07 000000462 INF: Autofocus start
17-03-17 20:45:14.188 -07 000000462 INF: MeasureProfile start
17-03-17 20:45:14.188 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:14.198 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:45:14.198 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:45:14.198 -07 000000462 INF: MeasureProfile done
17-03-17 20:45:14.198 -07 000000462 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:45:14.198 -07 000000462 INF: Autofocus finished
17-03-17 20:45:14.398 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:45:14.398 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:45:14.398 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.175288911096042. ----------
17-03-17 20:45:14.398 -07 000000610 INF: Cycle	42	Tile	12	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:45:14.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36804, sync = True, waitForSettling = True)
17-03-17 20:45:14.408 -07 000000610 INF: Z Motor: Moving to -0.168478 mm, started at -0.175289 mm, distance = 6.81 um
17-03-17 20:45:14.408 -07 000000610 INF: FPGA: Xmit ZDACW 36804\n [Z Motor]
17-03-17 20:45:14.408 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:45:14.418 -07 000000610 INF: FPGA: 'ZDACW 36804' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:14.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:14.418 -07 000000502 INF: FPGA: Recv ZDACR 36804
17-03-17 20:45:14.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:14.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:45:14.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:14.578 -07 000000433 INF: FPGA: Recv ZSGSRD 35518
17-03-17 20:45:14.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:14.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:14.588 -07 000000626 INF: FPGA: Recv ZSGSRD 35516
17-03-17 20:45:14.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:14.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:14.598 -07 000000475 INF: FPGA: Recv ZSGSRD 35515
17-03-17 20:45:14.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:14.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:14.608 -07 000000475 INF: FPGA: Recv ZSGSRD 35522
17-03-17 20:45:14.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:14.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:14.618 -07 000000547 INF: FPGA: Recv ZSGSRD 35522
17-03-17 20:45:14.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:14.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:14.628 -07 000000627 INF: FPGA: Recv ZSGSRD 35518
17-03-17 20:45:14.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:14.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:14.638 -07 000000626 INF: FPGA: Recv ZSGSRD 35517
17-03-17 20:45:14.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:14.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:14.648 -07 000000623 INF: FPGA: Recv ZSGSRD 35522
17-03-17 20:45:14.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:14.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:14.658 -07 000000626 INF: FPGA: Recv ZSGSRD 35514
17-03-17 20:45:14.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:14.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:14.668 -07 000000502 INF: FPGA: Recv ZSGSRD 35518
17-03-17 20:45:14.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:14.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:14.678 -07 000000475 INF: FPGA: Recv ZPIEZORD 31514
17-03-17 20:45:14.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:14.688 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -8.8 V.
17-03-17 20:45:14.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35518 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35518 (-167.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35514 (-167.6 uncal um), Max = 35522 (-167.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:45:14.688 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35518, posNoise = 4, negNoise = 4
17-03-17 20:45:14.688 -07 000000610 INF: Z Motor: After move to -0.168478, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:14.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 283 ms)
17-03-17 20:45:14.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:14.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:14.698 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:14.698 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:14.698 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:45:14.698 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:14.698 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:45:14.698 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:45:14.698 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:14.698 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:45:14.708 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:45:14.708 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:45:14.708 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:45:14.708 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:45:14.708 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:45:14.708 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:45:14.718 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:45:14.718 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:45:14.718 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:45:14.718 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:45:14.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 36981 150\n [Camera]
17-03-17 20:45:14.928 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:45:15.348 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:45:15.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:45:15.348 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:15.348 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:15.348 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:45:15.348 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:45:15.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:45:15.348 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:15.348 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:15.348 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:45:15.538 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36981 804
17-03-17 20:45:15.688 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:45:15.728 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:45:15.728 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:45:15.728 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:15.738 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:45:15.738 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:15.738 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:45:15.738 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:45:15.738 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:15.738 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:15.748 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:45:15.888 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:45:15.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:45:15.888 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:16.008 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:45:16.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:45:16.018 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:16.018 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:16.018 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:45:16.018 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:16.018 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:45:16.078 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-17 20:45:16.078 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:45:16.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 36981 150' command took 2 ms to send, 1349 ms to get response, and 1354 ms overall
17-03-17 20:45:16.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:45:16.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.168498518862201. ------
17-03-17 20:45:16.088 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17486 mm
17-03-17 20:45:16.088 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:45:16.088 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:16.088 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:16.088 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38199, sync = True, waitForSettling = False)
17-03-17 20:45:16.088 -07 000000475 INF: Z Motor: Moving to -0.174864 mm, started at -0.168499 mm, distance = -6.37 um
17-03-17 20:45:16.088 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:45:16.088 -07 000000433 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 20:45:16.098 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:45:16.098 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:16.098 -07 000000431 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:45:16.108 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:45:16.108 -07 000000433 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:16.108 -07 000000433 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:45:16.108 -07 000000433 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:45:16.108 -07 000000475 INF: FPGA: Xmit ZDACW 38199\n [Z Motor]
17-03-17 20:45:16.108 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:45:16.118 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:45:16.118 -07 000000475 INF: FPGA: 'ZDACW 38199' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:45:16.128 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:45:16.138 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:16.138 -07 000000623 INF: FPGA: Recv ZDACR 38199
17-03-17 20:45:16.148 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:45:16.148 -07 000000475 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 20:45:16.318 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:45:16.318 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:45:16.408 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:45:16.408 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:45:16.408 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:16.408 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 20:45:16.408 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:45:16.408 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:16.408 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:16.408 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:16.408 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-17 20:45:16.418 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:45:16.508 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 20:45:16.508 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 375 ms to get response, and 404 ms overall
17-03-17 20:45:16.548 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:16.548 -07 000000431 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:45:16.558 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:45:16.558 -07 000000433 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:16.558 -07 000000433 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:45:16.558 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 405 ms, distance = 0.845 mm, average velocity = 2.087 mm/sec
17-03-17 20:45:16.808 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:45:16.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:45:17.508 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:17.508 -07 000000547 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:45:17.518 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:17.518 -07 000000433 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:17.538 -07 000000433 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:45:17.538 -07 000000433 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:45:17.538 -07 000000433 INF: Y Motor: Moved to 69.8633 after 1446 ms (table move)
17-03-17 20:45:17.538 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174864 mm (DAC = 38199)
17-03-17 20:45:17.538 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:17.548 -07 000000626 INF: FPGA: Recv ZSGSRD 36505
17-03-17 20:45:17.548 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:45:17.548 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:17.548 -07 000000431 INF: FPGA: Recv ZSGSRD 36509
17-03-17 20:45:17.558 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:17.558 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:17.558 -07 000000626 INF: FPGA: Recv ZSGSRD 36503
17-03-17 20:45:17.568 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:17.568 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:17.568 -07 000000433 INF: FPGA: Recv ZSGSRD 36505
17-03-17 20:45:17.578 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:17.578 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:17.578 -07 000000547 INF: FPGA: Recv ZSGSRD 36503
17-03-17 20:45:17.588 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:17.588 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:17.588 -07 000000431 INF: FPGA: Recv ZSGSRD 36514
17-03-17 20:45:17.598 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:17.598 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:17.598 -07 000000626 INF: FPGA: Recv ZSGSRD 36509
17-03-17 20:45:17.608 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:17.608 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:17.608 -07 000000431 INF: FPGA: Recv ZSGSRD 36509
17-03-17 20:45:17.618 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:17.618 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:17.618 -07 000000623 INF: FPGA: Recv ZSGSRD 36514
17-03-17 20:45:17.628 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:17.628 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:17.628 -07 000000502 INF: FPGA: Recv ZSGSRD 36511
17-03-17 20:45:17.638 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:17.638 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:17.638 -07 000000626 INF: FPGA: Recv ZPIEZORD 32816
17-03-17 20:45:17.648 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:17.648 -07 000000627 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.829 V. Piezo Error = -8.2 V.
17-03-17 20:45:17.648 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36508 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36509 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36503 (-173.9 uncal um), Max = 36514 (-174.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:45:17.648 -07 000000627 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36508, posNoise = 6, negNoise = 5
17-03-17 20:45:17.648 -07 000000627 INF: Z Motor: After move to -0.174864, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:17.648 -07 000000627 INF: Z Motor: Settle wait time = 1449 ms, measure time = 103 ms (allowed 150 ms), total time = 1552 ms
17-03-17 20:45:17.648 -07 000000627 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:45:17.698 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 20:45:17.698 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:45:17.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:17.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:17.698 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:17.698 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:45:17.698 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:17.698 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:17.698 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:17.698 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:45:17.708 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:45:17.708 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:45:17.708 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:45:17.708 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:45:17.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:45:17.758 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:45:17.958 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:45:17.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:45:17.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:45:17.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-17 20:45:17.998 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:45:17.998 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 20:45:17.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 20:45:18.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 20:45:18.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:18.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:45:18.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 20:45:18.098 -07 000000627 INF: Autofocus start
17-03-17 20:45:18.098 -07 000000627 INF: MeasureProfile start
17-03-17 20:45:18.098 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:18.098 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:18.108 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:45:18.108 -07 000000627 INF: MeasureProfile done
17-03-17 20:45:18.108 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:45:18.108 -07 000000627 INF: Autofocus finished
17-03-17 20:45:18.118 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:45:18.318 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:45:18.318 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:45:18.318 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.174858488882544. ----------
17-03-17 20:45:18.318 -07 000000610 INF: Cycle	42	Tile	13	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:45:18.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36714, sync = True, waitForSettling = True)
17-03-17 20:45:18.328 -07 000000610 INF: Z Motor: Moving to -0.168066 mm, started at -0.174858 mm, distance = 6.79 um
17-03-17 20:45:18.328 -07 000000610 INF: FPGA: Xmit ZDACW 36714\n [Z Motor]
17-03-17 20:45:18.328 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 20:45:18.338 -07 000000610 INF: FPGA: 'ZDACW 36714' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:18.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:18.338 -07 000000626 INF: FPGA: Recv ZDACR 36714
17-03-17 20:45:18.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:18.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:45:18.428 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.990831,
17-03-17 20:45:18.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:18.498 -07 000000626 INF: FPGA: Recv ZSGSRD 35448
17-03-17 20:45:18.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:18.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:18.508 -07 000000626 INF: FPGA: Recv ZSGSRD 35459
17-03-17 20:45:18.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:18.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:18.518 -07 000000626 INF: FPGA: Recv ZSGSRD 35456
17-03-17 20:45:18.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:18.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:18.528 -07 000000502 INF: FPGA: Recv ZSGSRD 35447
17-03-17 20:45:18.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:18.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:18.538 -07 000000626 INF: FPGA: Recv ZSGSRD 35453
17-03-17 20:45:18.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:18.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:18.548 -07 000000502 INF: FPGA: Recv ZSGSRD 35453
17-03-17 20:45:18.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:18.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:18.558 -07 000000502 INF: FPGA: Recv ZSGSRD 35454
17-03-17 20:45:18.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:18.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:18.568 -07 000000012 INF: FPGA: Recv ZSGSRD 35449
17-03-17 20:45:18.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:45:18.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:18.578 -07 000000431 INF: FPGA: Recv ZSGSRD 35450
17-03-17 20:45:18.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:18.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:18.588 -07 000000012 INF: FPGA: Recv ZSGSRD 35455
17-03-17 20:45:18.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:18.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:18.598 -07 000000431 INF: FPGA: Recv ZPIEZORD 31383
17-03-17 20:45:18.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:18.608 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.602 V. Piezo Error = -9.0 V.
17-03-17 20:45:18.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35452 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35453 (-167.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35447 (-167.2 uncal um), Max = 35459 (-167.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:45:18.608 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35452, posNoise = 7, negNoise = 5
17-03-17 20:45:18.608 -07 000000610 INF: Z Motor: After move to -0.168066, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:18.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:45:18.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:18.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:18.608 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:18.608 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:18.608 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:45:18.608 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:18.608 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:45:18.608 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:45:18.608 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:45:18.608 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:45:18.608 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:45:18.608 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:45:18.608 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:45:18.608 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:45:18.618 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:45:18.618 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:45:18.628 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:45:18.628 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:45:18.628 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:45:18.628 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:45:18.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 36890 150\n [Camera]
17-03-17 20:45:18.828 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:45:19.248 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:45:19.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:45:19.258 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:45:19.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:45:19.258 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:19.258 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:19.258 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:19.258 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:45:19.268 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:19.268 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2317661968, 0x0, 391868352) start.
17-03-17 20:45:19.448 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36890 804
17-03-17 20:45:19.598 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:45:19.648 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2317661968, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:45:19.648 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:45:19.648 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:19.648 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:45:19.648 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:45:19.648 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:19.648 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:19.648 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:45:19.648 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:19.658 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:45:19.798 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:45:19.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:45:19.798 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:19.898 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:45:19.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:45:19.898 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:19.908 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:19.908 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:19.908 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:45:19.908 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:45:19.988 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:45:19.988 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:45:19.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 36890 150' command took 2 ms to send, 1343 ms to get response, and 1354 ms overall
17-03-17 20:45:19.988 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:45:19.988 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.168074520860844. ------
17-03-17 20:45:19.988 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:19.988 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17446 mm
17-03-17 20:45:19.988 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:45:19.998 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:19.998 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:45:19.998 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:45:19.998 -07 000000482 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 20:45:19.998 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:19.998 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38110, sync = True, waitForSettling = False)
17-03-17 20:45:19.998 -07 000000438 INF: Z Motor: Moving to -0.174456 mm, started at -0.168075 mm, distance = -6.38 um
17-03-17 20:45:19.998 -07 000000626 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:45:20.008 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:45:20.008 -07 000000482 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:20.008 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:45:20.008 -07 000000482 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:45:20.008 -07 000000482 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:45:20.018 -07 000000438 INF: FPGA: Xmit ZDACW 38110\n [Z Motor]
17-03-17 20:45:20.018 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 20:45:20.028 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:45:20.028 -07 000000438 INF: FPGA: 'ZDACW 38110' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:45:20.038 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:20.038 -07 000000626 INF: FPGA: Recv ZDACR 38110
17-03-17 20:45:20.048 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:45:20.048 -07 000000438 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 20:45:20.208 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:45:20.208 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 213 ms overall
17-03-17 20:45:20.298 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 20:45:20.298 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:45:20.298 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:20.298 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:20.298 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:45:20.298 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:45:20.298 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:20.308 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:20.308 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-17 20:45:20.308 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:45:20.398 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 20:45:20.398 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:45:20.438 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:20.438 -07 000000623 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:45:20.448 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:45:20.448 -07 000000482 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:20.448 -07 000000482 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:45:20.448 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.136 mm/sec
17-03-17 20:45:21.398 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:21.398 -07 000000438 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:45:21.408 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:21.408 -07 000000482 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:21.428 -07 000000482 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:45:21.428 -07 000000482 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:45:21.428 -07 000000482 INF: Y Motor: Moved to 70.6885 after 1431 ms (table move)
17-03-17 20:45:21.428 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174456 mm (DAC = 38110)
17-03-17 20:45:21.428 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:21.428 -07 000000431 INF: FPGA: Recv ZSGSRD 36447
17-03-17 20:45:21.438 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:45:21.438 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:21.438 -07 000000475 INF: FPGA: Recv ZSGSRD 36442
17-03-17 20:45:21.448 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:21.448 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:21.448 -07 000000012 INF: FPGA: Recv ZSGSRD 36442
17-03-17 20:45:21.458 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:21.458 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:21.458 -07 000000482 INF: FPGA: Recv ZSGSRD 36450
17-03-17 20:45:21.468 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:21.468 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:21.468 -07 000000431 INF: FPGA: Recv ZSGSRD 36451
17-03-17 20:45:21.478 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:21.478 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:21.478 -07 000000475 INF: FPGA: Recv ZSGSRD 36446
17-03-17 20:45:21.488 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:21.488 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:21.488 -07 000000438 INF: FPGA: Recv ZSGSRD 36447
17-03-17 20:45:21.498 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:21.498 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:21.498 -07 000000475 INF: FPGA: Recv ZSGSRD 36448
17-03-17 20:45:21.508 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:21.508 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:21.508 -07 000000462 INF: FPGA: Recv ZSGSRD 36448
17-03-17 20:45:21.518 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:21.518 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:21.518 -07 000000012 INF: FPGA: Recv ZSGSRD 36441
17-03-17 20:45:21.528 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:21.528 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:21.528 -07 000000623 INF: FPGA: Recv ZPIEZORD 32741
17-03-17 20:45:21.538 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:21.538 -07 000000433 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.815 V. Piezo Error = -8.2 V.
17-03-17 20:45:21.538 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36446 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36447 (-173.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36441 (-173.5 uncal um), Max = 36451 (-173.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:45:21.538 -07 000000433 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36446, posNoise = 5, negNoise = 5
17-03-17 20:45:21.538 -07 000000433 INF: Z Motor: After move to -0.174456, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:21.538 -07 000000433 INF: Z Motor: Settle wait time = 1433 ms, measure time = 105 ms (allowed 150 ms), total time = 1538 ms
17-03-17 20:45:21.538 -07 000000433 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:45:21.588 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 20:45:21.588 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:45:21.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:21.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:21.588 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:21.588 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:45:21.588 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:21.588 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:21.588 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:21.588 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:45:21.598 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:45:21.598 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:45:21.598 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:45:21.598 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:45:21.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:45:21.648 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:45:21.808 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:45:21.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:45:21.848 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:45:21.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:45:21.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:45:21.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-17 20:45:21.888 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:45:21.888 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 20:45:21.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 286 ms overall
17-03-17 20:45:21.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:45:21.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:21.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:45:21.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:45:21.988 -07 000000012 INF: Autofocus start
17-03-17 20:45:21.988 -07 000000012 INF: MeasureProfile start
17-03-17 20:45:21.988 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:21.988 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:21.998 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:45:21.998 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:45:21.998 -07 000000012 INF: MeasureProfile done
17-03-17 20:45:21.998 -07 000000012 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:45:21.998 -07 000000012 INF: Autofocus finished
17-03-17 20:45:22.198 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:45:22.198 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:45:22.198 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.174460187729755. ----------
17-03-17 20:45:22.198 -07 000000610 INF: Cycle	42	Tile	14	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:45:22.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36607, sync = True, waitForSettling = True)
17-03-17 20:45:22.208 -07 000000610 INF: Z Motor: Moving to -0.167576 mm, started at -0.174460 mm, distance = 6.88 um
17-03-17 20:45:22.208 -07 000000610 INF: FPGA: Xmit ZDACW 36607\n [Z Motor]
17-03-17 20:45:22.208 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 20:45:22.218 -07 000000610 INF: FPGA: 'ZDACW 36607' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:22.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:22.218 -07 000000482 INF: FPGA: Recv ZDACR 36607
17-03-17 20:45:22.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:22.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:45:22.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:22.378 -07 000000433 INF: FPGA: Recv ZSGSRD 35377
17-03-17 20:45:22.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:22.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:22.388 -07 000000431 INF: FPGA: Recv ZSGSRD 35378
17-03-17 20:45:22.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:22.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:22.398 -07 000000627 INF: FPGA: Recv ZSGSRD 35372
17-03-17 20:45:22.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:22.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:22.408 -07 000000433 INF: FPGA: Recv ZSGSRD 35372
17-03-17 20:45:22.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:22.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:22.418 -07 000000475 INF: FPGA: Recv ZSGSRD 35376
17-03-17 20:45:22.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:22.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:22.428 -07 000000433 INF: FPGA: Recv ZSGSRD 35383
17-03-17 20:45:22.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:22.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:22.438 -07 000000438 INF: FPGA: Recv ZSGSRD 35368
17-03-17 20:45:22.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:22.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:22.448 -07 000000433 INF: FPGA: Recv ZSGSRD 35375
17-03-17 20:45:22.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:22.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:22.458 -07 000000438 INF: FPGA: Recv ZSGSRD 35374
17-03-17 20:45:22.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:22.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:22.468 -07 000000438 INF: FPGA: Recv ZSGSRD 35376
17-03-17 20:45:22.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:22.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:22.478 -07 000000475 INF: FPGA: Recv ZPIEZORD 31331
17-03-17 20:45:22.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:22.488 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.586 V. Piezo Error = -8.9 V.
17-03-17 20:45:22.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35375 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35376 (-166.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35368 (-166.7 uncal um), Max = 35383 (-166.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:45:22.488 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35375, posNoise = 8, negNoise = 7
17-03-17 20:45:22.488 -07 000000610 INF: Z Motor: After move to -0.167576, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:22.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:45:22.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:22.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:22.488 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:22.488 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:22.488 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:45:22.488 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:22.488 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:45:22.488 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:45:22.488 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:22.488 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:45:22.488 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:45:22.488 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:45:22.488 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:45:22.488 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:45:22.498 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:45:22.498 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:45:22.498 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:45:22.498 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:45:22.508 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:45:22.508 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:45:22.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 36784 150\n [Camera]
17-03-17 20:45:22.708 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 20:45:23.128 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 612
17-03-17 20:45:23.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 612
17-03-17 20:45:23.128 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:23.128 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 612
17-03-17 20:45:23.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 612
17-03-17 20:45:23.128 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:23.128 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:23.128 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:45:23.138 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:23.138 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2322067272, 0x0, 391868352) start.
17-03-17 20:45:23.318 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36784 804
17-03-17 20:45:23.478 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 955
17-03-17 20:45:23.508 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:45:23.508 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:45:23.508 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:23.508 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2322067272, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:45:23.508 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:45:23.508 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:23.518 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:45:23.518 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:45:23.518 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:45:23.528 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:45:23.668 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:45:23.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:45:23.668 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:23.778 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:45:23.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:45:23.778 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:23.788 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:23.788 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:45:23.788 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.990831,
17-03-17 20:45:23.788 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:23.788 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:45:23.858 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:45:23.858 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:45:23.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 36784 150' command took 2 ms to send, 1349 ms to get response, and 1355 ms overall
17-03-17 20:45:23.868 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:45:23.868 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.167579856525929. ------
17-03-17 20:45:23.868 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:23.868 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17420 mm
17-03-17 20:45:23.868 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:45:23.868 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:45:23.868 -07 000000438 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 20:45:23.868 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38054, sync = True, waitForSettling = False)
17-03-17 20:45:23.868 -07 000000475 INF: Z Motor: Moving to -0.174200 mm, started at -0.167580 mm, distance = -6.62 um
17-03-17 20:45:23.868 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:23.878 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:45:23.878 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:23.878 -07 000000431 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:45:23.888 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:45:23.888 -07 000000438 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:23.888 -07 000000475 INF: FPGA: Xmit ZDACW 38054\n [Z Motor]
17-03-17 20:45:23.888 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:45:23.888 -07 000000438 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:45:23.888 -07 000000438 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:45:23.898 -07 000000475 INF: FPGA: 'ZDACW 38054' command took 3 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:45:23.898 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:45:23.908 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:45:23.918 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:23.918 -07 000000627 INF: FPGA: Recv ZDACR 38054
17-03-17 20:45:23.928 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:45:23.928 -07 000000475 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 20:45:24.098 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:45:24.098 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:45:24.178 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:45:24.178 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:45:24.178 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:24.188 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:45:24.188 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:45:24.188 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:24.188 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:24.188 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 20:45:24.188 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:24.198 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:45:24.288 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 20:45:24.288 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 393 ms overall
17-03-17 20:45:24.318 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:24.328 -07 000000502 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:45:24.328 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 20:45:24.328 -07 000000438 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:24.328 -07 000000438 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:45:24.328 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.142 mm/sec
17-03-17 20:45:25.278 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:25.278 -07 000000480 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:45:25.288 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:25.288 -07 000000438 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:25.308 -07 000000438 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:45:25.308 -07 000000438 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:45:25.308 -07 000000438 INF: Y Motor: Moved to 71.5190 after 1436 ms (table move)
17-03-17 20:45:25.308 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174200 mm (DAC = 38054)
17-03-17 20:45:25.308 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:25.318 -07 000000438 INF: FPGA: Recv ZSGSRD 36402
17-03-17 20:45:25.318 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:45:25.318 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:25.318 -07 000000482 INF: FPGA: Recv ZSGSRD 36411
17-03-17 20:45:25.328 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:25.328 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:25.328 -07 000000482 INF: FPGA: Recv ZSGSRD 36407
17-03-17 20:45:25.338 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:25.338 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:25.338 -07 000000482 INF: FPGA: Recv ZSGSRD 36401
17-03-17 20:45:25.348 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:25.348 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:25.348 -07 000000482 INF: FPGA: Recv ZSGSRD 36406
17-03-17 20:45:25.358 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:25.358 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:25.358 -07 000000482 INF: FPGA: Recv ZSGSRD 36402
17-03-17 20:45:25.368 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:25.368 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:25.368 -07 000000482 INF: FPGA: Recv ZSGSRD 36407
17-03-17 20:45:25.378 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:25.378 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:25.378 -07 000000569 INF: FPGA: Recv ZSGSRD 36407
17-03-17 20:45:25.388 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:25.388 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:25.388 -07 000000480 INF: FPGA: Recv ZSGSRD 36411
17-03-17 20:45:25.398 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:25.398 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:25.398 -07 000000480 INF: FPGA: Recv ZSGSRD 36414
17-03-17 20:45:25.408 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:25.408 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:25.408 -07 000000480 INF: FPGA: Recv ZPIEZORD 32694
17-03-17 20:45:25.418 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:25.418 -07 000000462 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.807 V. Piezo Error = -8.2 V.
17-03-17 20:45:25.418 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.2 um, Read 10 ADC samples: Avg = 36407 (-173.3 uncal um), Error = 0.9 uncal um, Median = 36407 (-173.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36401 (-173.3 uncal um), Max = 36414 (-173.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:45:25.418 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36407, posNoise = 7, negNoise = 6
17-03-17 20:45:25.418 -07 000000462 INF: Z Motor: After move to -0.174200, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:25.418 -07 000000462 INF: Z Motor: Settle wait time = 1439 ms, measure time = 105 ms (allowed 150 ms), total time = 1544 ms
17-03-17 20:45:25.418 -07 000000462 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:45:25.468 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 20:45:25.468 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:45:25.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:25.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:25.468 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:25.468 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:25.468 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:45:25.468 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:25.468 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:25.468 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:45:25.478 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:45:25.478 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:45:25.488 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:45:25.488 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:45:25.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:45:25.538 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:45:25.738 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:45:25.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:45:25.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:45:25.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-17 20:45:25.778 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:45:25.778 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 20:45:25.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 20:45:25.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:45:25.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:25.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:45:25.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:45:25.878 -07 000000433 INF: Autofocus start
17-03-17 20:45:25.878 -07 000000433 INF: MeasureProfile start
17-03-17 20:45:25.878 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:25.878 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:25.888 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:45:25.888 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:45:25.898 -07 000000433 INF: MeasureProfile done
17-03-17 20:45:25.898 -07 000000433 INF: X=64  Z correction [um]=0.2557664
17-03-17 20:45:25.898 -07 000000433 INF: Autofocus finished
17-03-17 20:45:26.088 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:45:26.088 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:45:26.088 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.174209643456226. ----------
17-03-17 20:45:26.088 -07 000000610 INF: Cycle	42	Tile	15	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:45:26.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36622, sync = True, waitForSettling = True)
17-03-17 20:45:26.098 -07 000000610 INF: Z Motor: Moving to -0.167645 mm, started at -0.174210 mm, distance = 6.56 um
17-03-17 20:45:26.098 -07 000000610 INF: FPGA: Xmit ZDACW 36622\n [Z Motor]
17-03-17 20:45:26.098 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 20:45:26.108 -07 000000610 INF: FPGA: 'ZDACW 36622' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:45:26.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:26.108 -07 000000462 INF: FPGA: Recv ZDACR 36622
17-03-17 20:45:26.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:26.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:45:26.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:26.268 -07 000000012 INF: FPGA: Recv ZSGSRD 35394
17-03-17 20:45:26.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:26.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:26.278 -07 000000462 INF: FPGA: Recv ZSGSRD 35384
17-03-17 20:45:26.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:26.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:26.288 -07 000000012 INF: FPGA: Recv ZSGSRD 35383
17-03-17 20:45:26.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:26.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:26.298 -07 000000482 INF: FPGA: Recv ZSGSRD 35391
17-03-17 20:45:26.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:26.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:26.308 -07 000000462 INF: FPGA: Recv ZSGSRD 35384
17-03-17 20:45:26.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:26.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:26.318 -07 000000482 INF: FPGA: Recv ZSGSRD 35388
17-03-17 20:45:26.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:26.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:26.328 -07 000000431 INF: FPGA: Recv ZSGSRD 35385
17-03-17 20:45:26.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:26.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:26.338 -07 000000480 INF: FPGA: Recv ZSGSRD 35392
17-03-17 20:45:26.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:26.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:26.348 -07 000000502 INF: FPGA: Recv ZSGSRD 35391
17-03-17 20:45:26.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:26.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:26.358 -07 000000475 INF: FPGA: Recv ZSGSRD 35387
17-03-17 20:45:26.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:26.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:26.368 -07 000000462 INF: FPGA: Recv ZPIEZORD 31347
17-03-17 20:45:26.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:26.378 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.588 V. Piezo Error = -8.9 V.
17-03-17 20:45:26.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35388 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35388 (-166.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35383 (-166.8 uncal um), Max = 35394 (-166.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:45:26.378 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35388, posNoise = 6, negNoise = 5
17-03-17 20:45:26.378 -07 000000610 INF: Z Motor: After move to -0.167645, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:26.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:45:26.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:26.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:26.378 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:26.378 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:26.378 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:45:26.378 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:26.378 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:45:26.378 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:45:26.378 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:26.378 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:45:26.378 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:45:26.378 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:45:26.378 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:45:26.378 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:45:26.388 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:45:26.388 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:45:26.388 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:45:26.388 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:45:26.398 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:45:26.398 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:45:26.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 36799 150\n [Camera]
17-03-17 20:45:26.598 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:45:26.808 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:45:26.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:45:27.018 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:45:27.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:45:27.018 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:27.018 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:45:27.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:45:27.018 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:27.018 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:27.018 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:45:27.018 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:27.018 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2322067272, 0x0, 391868352) start.
17-03-17 20:45:27.208 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36799 804
17-03-17 20:45:27.358 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:45:27.398 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2322067272, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 20:45:27.398 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:45:27.398 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:27.398 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:45:27.398 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:45:27.398 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:27.398 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:27.398 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:45:27.398 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:27.408 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:45:27.558 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:45:27.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:45:27.558 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:27.668 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:45:27.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:45:27.668 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:27.678 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:27.678 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:45:27.678 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:27.678 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:45:27.748 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:45:27.748 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:45:27.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 36799 150' command took 2 ms to send, 1348 ms to get response, and 1354 ms overall
17-03-17 20:45:27.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:45:27.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167663371283772. ------
17-03-17 20:45:27.758 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:27.758 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17368 mm
17-03-17 20:45:27.758 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:45:27.758 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:45:27.758 -07 000000433 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 20:45:27.758 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:27.758 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37940, sync = True, waitForSettling = False)
17-03-17 20:45:27.758 -07 000000502 INF: Z Motor: Moving to -0.173678 mm, started at -0.167663 mm, distance = -6.01 um
17-03-17 20:45:27.768 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:45:27.768 -07 000000502 INF: FPGA: Xmit ZDACW 37940\n [Z Motor]
17-03-17 20:45:27.768 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:45:27.778 -07 000000502 INF: FPGA: 'ZDACW 37940' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:45:27.778 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:27.778 -07 000000012 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:45:27.788 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:45:27.788 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:45:27.788 -07 000000433 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:27.788 -07 000000433 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:45:27.788 -07 000000433 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:45:27.798 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:27.798 -07 000000462 INF: FPGA: Recv ZDACR 37940
17-03-17 20:45:27.808 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:45:27.808 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:45:27.808 -07 000000502 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:45:27.988 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:45:27.988 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:45:28.068 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 20:45:28.068 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:45:28.068 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:28.068 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:45:28.068 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:45:28.068 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:28.068 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:28.078 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:28.078 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 20:45:28.078 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:45:28.178 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 20:45:28.178 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:45:28.218 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:28.218 -07 000000012 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:45:28.228 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:45:28.228 -07 000000433 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:28.228 -07 000000433 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:45:28.228 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.136 mm/sec
17-03-17 20:45:29.148 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.975845,
17-03-17 20:45:29.178 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:29.178 -07 000000502 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:45:29.188 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:29.188 -07 000000433 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:29.208 -07 000000433 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:45:29.208 -07 000000433 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:45:29.208 -07 000000433 INF: Y Motor: Moved to 72.3501 after 1447 ms (table move)
17-03-17 20:45:29.208 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173678 mm (DAC = 37940)
17-03-17 20:45:29.208 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:29.218 -07 000000627 INF: FPGA: Recv ZSGSRD 36326
17-03-17 20:45:29.218 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:45:29.218 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:29.218 -07 000000462 INF: FPGA: Recv ZSGSRD 36331
17-03-17 20:45:29.228 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:29.228 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:29.228 -07 000000431 INF: FPGA: Recv ZSGSRD 36327
17-03-17 20:45:29.238 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:29.238 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:29.238 -07 000000433 INF: FPGA: Recv ZSGSRD 36327
17-03-17 20:45:29.248 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:29.248 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:29.248 -07 000000012 INF: FPGA: Recv ZSGSRD 36330
17-03-17 20:45:29.258 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:45:29.258 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:29.258 -07 000000433 INF: FPGA: Recv ZSGSRD 36331
17-03-17 20:45:29.268 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:29.268 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:29.268 -07 000000480 INF: FPGA: Recv ZSGSRD 36328
17-03-17 20:45:29.278 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:29.278 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:29.278 -07 000000502 INF: FPGA: Recv ZSGSRD 36315
17-03-17 20:45:29.288 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:29.288 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:29.288 -07 000000480 INF: FPGA: Recv ZSGSRD 36325
17-03-17 20:45:29.298 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:29.298 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:29.298 -07 000000462 INF: FPGA: Recv ZSGSRD 36327
17-03-17 20:45:29.308 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:29.308 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:29.308 -07 000000475 INF: FPGA: Recv ZPIEZORD 32591
17-03-17 20:45:29.318 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:29.318 -07 000000482 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.789 V. Piezo Error = -8.3 V.
17-03-17 20:45:29.318 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36327 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36327 (-172.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36315 (-172.7 uncal um), Max = 36331 (-172.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 20:45:29.318 -07 000000482 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36327, posNoise = 4, negNoise = 12
17-03-17 20:45:29.318 -07 000000482 INF: Z Motor: After move to -0.173678, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:29.318 -07 000000482 INF: Z Motor: Settle wait time = 1449 ms, measure time = 103 ms (allowed 150 ms), total time = 1552 ms
17-03-17 20:45:29.318 -07 000000482 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:45:29.368 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 20:45:29.368 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:45:29.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:29.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:29.368 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:29.368 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:29.368 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:45:29.368 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:29.368 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:29.368 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:45:29.378 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:45:29.378 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:45:29.388 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:45:29.388 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:45:29.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:45:29.438 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:45:29.638 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:45:29.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:45:29.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:45:29.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-17 20:45:29.678 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:45:29.678 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 20:45:29.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 20:45:29.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:45:29.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:29.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:45:29.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:45:29.778 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:29.778 -07 000000431 INF: Autofocus start
17-03-17 20:45:29.778 -07 000000431 INF: MeasureProfile start
17-03-17 20:45:29.778 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:29.788 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:45:29.788 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:45:29.788 -07 000000431 INF: MeasureProfile done
17-03-17 20:45:29.788 -07 000000431 INF: X=96  Z correction [um]=0.4193256
17-03-17 20:45:29.788 -07 000000431 INF: Autofocus finished
17-03-17 20:45:29.988 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:45:29.988 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:45:29.988 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.173695706484885. ----------
17-03-17 20:45:29.988 -07 000000610 INF: Cycle	42	Tile	16	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:45:29.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36545, sync = True, waitForSettling = True)
17-03-17 20:45:29.998 -07 000000610 INF: Z Motor: Moving to -0.167292 mm, started at -0.173696 mm, distance = 6.40 um
17-03-17 20:45:29.998 -07 000000610 INF: FPGA: Xmit ZDACW 36545\n [Z Motor]
17-03-17 20:45:29.998 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:45:30.008 -07 000000610 INF: FPGA: 'ZDACW 36545' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:30.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:30.008 -07 000000431 INF: FPGA: Recv ZDACR 36545
17-03-17 20:45:30.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:30.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:45:30.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:30.168 -07 000000502 INF: FPGA: Recv ZSGSRD 35331
17-03-17 20:45:30.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:30.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:30.178 -07 000000431 INF: FPGA: Recv ZSGSRD 35336
17-03-17 20:45:30.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:30.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:30.188 -07 000000433 INF: FPGA: Recv ZSGSRD 35332
17-03-17 20:45:30.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:30.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:30.198 -07 000000502 INF: FPGA: Recv ZSGSRD 35326
17-03-17 20:45:30.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:30.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:30.208 -07 000000433 INF: FPGA: Recv ZSGSRD 35333
17-03-17 20:45:30.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:30.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:30.218 -07 000000482 INF: FPGA: Recv ZSGSRD 35331
17-03-17 20:45:30.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:45:30.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:30.228 -07 000000462 INF: FPGA: Recv ZSGSRD 35332
17-03-17 20:45:30.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:30.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:30.238 -07 000000475 INF: FPGA: Recv ZSGSRD 35339
17-03-17 20:45:30.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:30.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:30.248 -07 000000012 INF: FPGA: Recv ZSGSRD 35333
17-03-17 20:45:30.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:30.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:30.258 -07 000000480 INF: FPGA: Recv ZSGSRD 35335
17-03-17 20:45:30.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:30.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:30.268 -07 000000431 INF: FPGA: Recv ZPIEZORD 31273
17-03-17 20:45:30.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:30.278 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.576 V. Piezo Error = -9.0 V.
17-03-17 20:45:30.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35333 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35332 (-166.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35326 (-166.4 uncal um), Max = 35339 (-166.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:45:30.278 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35333, posNoise = 6, negNoise = 7
17-03-17 20:45:30.278 -07 000000610 INF: Z Motor: After move to -0.167292, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:30.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:45:30.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:30.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:30.278 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:30.278 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:45:30.278 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:30.278 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:30.278 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:45:30.278 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:45:30.278 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:30.278 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:45:30.278 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:45:30.278 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:45:30.278 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:45:30.278 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:45:30.288 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:45:30.288 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:45:30.298 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 20:45:30.298 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:45:30.298 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 20:45:30.298 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:45:30.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 36721 150\n [Camera]
17-03-17 20:45:30.518 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:45:30.938 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:45:30.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:45:30.938 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:30.938 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:45:30.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:45:30.938 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:30.938 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:30.938 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:45:30.938 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:30.938 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2322067272, 0x0, 391868352) start.
17-03-17 20:45:31.128 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36721 807
17-03-17 20:45:31.278 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:45:31.308 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2322067272, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 20:45:31.308 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 20:45:31.308 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:31.318 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:45:31.318 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:45:31.318 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:31.318 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:31.318 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:45:31.318 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:31.328 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:45:31.478 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:45:31.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:45:31.478 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:31.588 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:45:31.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:45:31.588 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:31.598 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:31.598 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:45:31.598 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:31.598 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:45:31.668 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-17 20:45:31.668 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:45:31.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 36721 150' command took 2 ms to send, 1346 ms to get response, and 1355 ms overall
17-03-17 20:45:31.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:45:31.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.167310039615975. ------
17-03-17 20:45:31.678 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:31.678 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17385 mm
17-03-17 20:45:31.678 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:45:31.678 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:45:31.678 -07 000000480 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 20:45:31.678 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 37978, sync = True, waitForSettling = False)
17-03-17 20:45:31.678 -07 000000433 INF: Z Motor: Moving to -0.173852 mm, started at -0.167310 mm, distance = -6.54 um
17-03-17 20:45:31.678 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:31.688 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:45:31.688 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:31.688 -07 000000627 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:45:31.698 -07 000000433 INF: FPGA: Xmit ZDACW 37978\n [Z Motor]
17-03-17 20:45:31.698 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:45:31.698 -07 000000480 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:31.698 -07 000000480 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:45:31.698 -07 000000480 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:45:31.698 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:45:31.708 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:45:31.708 -07 000000433 INF: FPGA: 'ZDACW 37978' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:45:31.718 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:45:31.728 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:31.728 -07 000000627 INF: FPGA: Recv ZDACR 37978
17-03-17 20:45:31.738 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:45:31.738 -07 000000433 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 20:45:31.818 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:45:31.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:45:31.908 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:45:31.908 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:45:31.978 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:45:31.978 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:45:31.978 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:31.988 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:31.988 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:45:31.988 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:45:31.988 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:31.988 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:31.988 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 20:45:31.988 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:45:32.088 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 20:45:32.088 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:45:32.128 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:32.128 -07 000000462 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:45:32.138 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:45:32.138 -07 000000480 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:32.138 -07 000000480 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 20:45:32.138 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 20:45:33.088 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:33.088 -07 000000433 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:45:33.098 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:33.098 -07 000000480 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:33.118 -07 000000480 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:45:33.118 -07 000000480 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:45:33.118 -07 000000480 INF: Y Motor: Moved to 73.1763 after 1437 ms (table move)
17-03-17 20:45:33.118 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173852 mm (DAC = 37978)
17-03-17 20:45:33.118 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:33.118 -07 000000462 INF: FPGA: Recv ZSGSRD 36357
17-03-17 20:45:33.128 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:45:33.128 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:33.128 -07 000000475 INF: FPGA: Recv ZSGSRD 36352
17-03-17 20:45:33.138 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:33.138 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:33.138 -07 000000448 INF: FPGA: Recv ZSGSRD 36352
17-03-17 20:45:33.148 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:33.148 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:33.148 -07 000000475 INF: FPGA: Recv ZSGSRD 36356
17-03-17 20:45:33.158 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:33.158 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:33.158 -07 000000462 INF: FPGA: Recv ZSGSRD 36352
17-03-17 20:45:33.168 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:33.168 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:33.168 -07 000000627 INF: FPGA: Recv ZSGSRD 36361
17-03-17 20:45:33.178 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:33.178 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:33.178 -07 000000547 INF: FPGA: Recv ZSGSRD 36358
17-03-17 20:45:33.188 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:33.188 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:33.188 -07 000000623 INF: FPGA: Recv ZSGSRD 36352
17-03-17 20:45:33.198 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:33.198 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:33.198 -07 000000448 INF: FPGA: Recv ZSGSRD 36345
17-03-17 20:45:33.208 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:33.208 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:33.208 -07 000000626 INF: FPGA: Recv ZSGSRD 36349
17-03-17 20:45:33.218 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:33.218 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:33.218 -07 000000547 INF: FPGA: Recv ZPIEZORD 32652
17-03-17 20:45:33.228 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:33.228 -07 000000012 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.795 V. Piezo Error = -8.2 V.
17-03-17 20:45:33.228 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36353 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36352 (-173.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36345 (-172.9 uncal um), Max = 36361 (-173.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:45:33.228 -07 000000012 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36353, posNoise = 8, negNoise = 8
17-03-17 20:45:33.228 -07 000000012 INF: Z Motor: After move to -0.173852, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:33.228 -07 000000012 INF: Z Motor: Settle wait time = 1440 ms, measure time = 103 ms (allowed 150 ms), total time = 1543 ms
17-03-17 20:45:33.228 -07 000000012 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:45:33.278 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 20:45:33.278 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:45:33.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:33.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:33.278 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:33.278 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:33.278 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:45:33.278 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:33.288 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:33.288 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:45:33.288 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:45:33.288 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:45:33.298 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 20:45:33.298 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 20:45:33.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:45:33.348 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:45:33.548 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:45:33.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:45:33.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:45:33.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-17 20:45:33.588 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:45:33.588 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 20:45:33.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 20:45:33.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:45:33.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:33.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:45:33.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:45:33.688 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:33.688 -07 000000433 INF: Autofocus start
17-03-17 20:45:33.688 -07 000000433 INF: MeasureProfile start
17-03-17 20:45:33.688 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:33.698 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:45:33.698 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:45:33.698 -07 000000433 INF: MeasureProfile done
17-03-17 20:45:33.698 -07 000000433 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:45:33.698 -07 000000433 INF: Autofocus finished
17-03-17 20:45:33.898 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:45:33.898 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:45:33.898 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.173862736000571. ----------
17-03-17 20:45:33.898 -07 000000610 INF: Cycle	42	Tile	17	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:45:33.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36475, sync = True, waitForSettling = True)
17-03-17 20:45:33.908 -07 000000610 INF: Z Motor: Moving to -0.166972 mm, started at -0.173863 mm, distance = 6.89 um
17-03-17 20:45:33.908 -07 000000610 INF: FPGA: Xmit ZDACW 36475\n [Z Motor]
17-03-17 20:45:33.908 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:45:33.918 -07 000000610 INF: FPGA: 'ZDACW 36475' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:33.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:33.918 -07 000000623 INF: FPGA: Recv ZDACR 36475
17-03-17 20:45:33.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:33.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:45:34.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:34.078 -07 000000433 INF: FPGA: Recv ZSGSRD 35282
17-03-17 20:45:34.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:34.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:34.088 -07 000000012 INF: FPGA: Recv ZSGSRD 35279
17-03-17 20:45:34.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:34.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:34.098 -07 000000462 INF: FPGA: Recv ZSGSRD 35282
17-03-17 20:45:34.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:34.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:34.108 -07 000000623 INF: FPGA: Recv ZSGSRD 35277
17-03-17 20:45:34.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:34.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:34.118 -07 000000627 INF: FPGA: Recv ZSGSRD 35286
17-03-17 20:45:34.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:34.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:34.128 -07 000000475 INF: FPGA: Recv ZSGSRD 35277
17-03-17 20:45:34.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:34.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:34.138 -07 000000627 INF: FPGA: Recv ZSGSRD 35281
17-03-17 20:45:34.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:34.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:34.148 -07 000000623 INF: FPGA: Recv ZSGSRD 35282
17-03-17 20:45:34.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:34.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:34.158 -07 000000462 INF: FPGA: Recv ZSGSRD 35284
17-03-17 20:45:34.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:34.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:34.168 -07 000000547 INF: FPGA: Recv ZSGSRD 35281
17-03-17 20:45:34.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:34.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:34.178 -07 000000012 INF: FPGA: Recv ZPIEZORD 31240
17-03-17 20:45:34.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:34.188 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.566 V. Piezo Error = -8.9 V.
17-03-17 20:45:34.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35281 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35282 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35277 (-166.1 uncal um), Max = 35286 (-166.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:45:34.188 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35281, posNoise = 5, negNoise = 4
17-03-17 20:45:34.188 -07 000000610 INF: Z Motor: After move to -0.166972, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:34.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:45:34.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:34.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:34.188 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:34.188 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:34.188 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:45:34.188 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:34.188 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:45:34.188 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:45:34.188 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:34.188 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:45:34.188 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:45:34.188 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:45:34.198 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:45:34.198 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:45:34.198 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:45:34.198 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:45:34.208 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:45:34.208 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:45:34.208 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:45:34.208 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:45:34.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 36652 150\n [Camera]
17-03-17 20:45:34.408 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:45:34.518 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.978563,
17-03-17 20:45:34.828 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:45:34.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:45:34.828 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:34.838 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:45:34.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:45:34.838 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:34.838 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:34.838 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:45:34.838 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:34.838 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2322067272, 0x0, 391868352) start.
17-03-17 20:45:35.018 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36652 804
17-03-17 20:45:35.168 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:45:35.218 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2322067272, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 20:45:35.218 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:45:35.218 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:35.228 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 20:45:35.228 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:45:35.228 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:35.228 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:35.228 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:45:35.228 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:35.238 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:45:35.368 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:45:35.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:45:35.368 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:35.488 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:45:35.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:45:35.488 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:35.498 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:35.498 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:45:35.498 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:35.498 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:45:35.558 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:45:35.568 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:45:35.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 36652 150' command took 2 ms to send, 1350 ms to get response, and 1354 ms overall
17-03-17 20:45:35.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:45:35.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166975980584603. ------
17-03-17 20:45:35.568 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:35.568 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17329 mm
17-03-17 20:45:35.568 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:45:35.568 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:35.568 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37855, sync = True, waitForSettling = False)
17-03-17 20:45:35.568 -07 000000502 INF: Z Motor: Moving to -0.173289 mm, started at -0.166976 mm, distance = -6.31 um
17-03-17 20:45:35.568 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:45:35.568 -07 000000623 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 20:45:35.578 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:45:35.578 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:35.578 -07 000000438 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:45:35.588 -07 000000502 INF: FPGA: Xmit ZDACW 37855\n [Z Motor]
17-03-17 20:45:35.588 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:35.588 -07 000000623 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:35.588 -07 000000623 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:45:35.588 -07 000000623 INF: Y Motor: Moving 1354 steps-33
17-03-17 20:45:35.588 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:45:35.598 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:45:35.598 -07 000000502 INF: FPGA: 'ZDACW 37855' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:45:35.608 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:45:35.618 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:35.618 -07 000000626 INF: FPGA: Recv ZDACR 37855
17-03-17 20:45:35.628 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:45:35.628 -07 000000502 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:45:35.798 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:45:35.798 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:45:35.868 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:45:35.868 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:45:35.868 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:35.878 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:45:35.878 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:45:35.878 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:35.878 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:35.878 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:35.878 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-17 20:45:35.888 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:45:35.978 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 20:45:35.978 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:45:36.008 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:36.018 -07 000000433 INF: FPGA: Recv YRDPOS 151568
17-03-17 20:45:36.018 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:45:36.018 -07 000000623 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:36.018 -07 000000623 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 20:45:36.018 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 20:45:36.818 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:45:36.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:45:36.968 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:36.968 -07 000000448 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:45:36.978 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:36.978 -07 000000623 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:36.988 -07 000000623 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:45:36.988 -07 000000623 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:45:36.988 -07 000000623 INF: Y Motor: Moved to 74.0083 after 1418 ms (table move)
17-03-17 20:45:36.998 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173289 mm (DAC = 37855)
17-03-17 20:45:36.998 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:36.998 -07 000000482 INF: FPGA: Recv ZSGSRD 36267
17-03-17 20:45:37.008 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:45:37.008 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:37.008 -07 000000480 INF: FPGA: Recv ZSGSRD 36260
17-03-17 20:45:37.018 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:37.018 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:37.018 -07 000000626 INF: FPGA: Recv ZSGSRD 36264
17-03-17 20:45:37.028 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:37.028 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:37.028 -07 000000480 INF: FPGA: Recv ZSGSRD 36263
17-03-17 20:45:37.038 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:37.038 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:37.038 -07 000000626 INF: FPGA: Recv ZSGSRD 36269
17-03-17 20:45:37.048 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:37.048 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:37.048 -07 000000480 INF: FPGA: Recv ZSGSRD 36269
17-03-17 20:45:37.058 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:37.058 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:37.058 -07 000000482 INF: FPGA: Recv ZSGSRD 36264
17-03-17 20:45:37.068 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:37.068 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:37.068 -07 000000627 INF: FPGA: Recv ZSGSRD 36265
17-03-17 20:45:37.078 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:37.078 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:37.078 -07 000000623 INF: FPGA: Recv ZSGSRD 36262
17-03-17 20:45:37.088 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:37.088 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:37.088 -07 000000480 INF: FPGA: Recv ZSGSRD 36262
17-03-17 20:45:37.098 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:37.098 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:37.098 -07 000000627 INF: FPGA: Recv ZPIEZORD 32514
17-03-17 20:45:37.108 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:37.108 -07 000000547 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.776 V. Piezo Error = -8.3 V.
17-03-17 20:45:37.108 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36264 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36264 (-172.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36260 (-172.4 uncal um), Max = 36269 (-172.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:45:37.108 -07 000000547 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36264, posNoise = 5, negNoise = 4
17-03-17 20:45:37.108 -07 000000547 INF: Z Motor: After move to -0.173289, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:37.108 -07 000000547 INF: Z Motor: Settle wait time = 1422 ms, measure time = 109 ms (allowed 150 ms), total time = 1531 ms
17-03-17 20:45:37.108 -07 000000547 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 20:45:37.158 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 20:45:37.158 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:45:37.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:37.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:37.158 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:37.158 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:37.158 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:45:37.158 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:37.158 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:37.158 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:45:37.168 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:45:37.168 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:45:37.178 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:45:37.178 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:45:37.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:45:37.228 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:45:37.428 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:45:37.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:45:37.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:45:37.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-17 20:45:37.468 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:45:37.468 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 20:45:37.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 20:45:37.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:45:37.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:37.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:45:37.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 20:45:37.568 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:37.568 -07 000000627 INF: Autofocus start
17-03-17 20:45:37.568 -07 000000627 INF: MeasureProfile start
17-03-17 20:45:37.568 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:37.578 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:45:37.578 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:45:37.578 -07 000000627 INF: MeasureProfile done
17-03-17 20:45:37.578 -07 000000627 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:45:37.578 -07 000000627 INF: Autofocus finished
17-03-17 20:45:37.778 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:45:37.778 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 20:45:37.778 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.173290981119954. ----------
17-03-17 20:45:37.788 -07 000000610 INF: Cycle	42	Tile	18	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:45:37.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36370, sync = True, waitForSettling = True)
17-03-17 20:45:37.788 -07 000000610 INF: Z Motor: Moving to -0.166491 mm, started at -0.173291 mm, distance = 6.80 um
17-03-17 20:45:37.788 -07 000000610 INF: FPGA: Xmit ZDACW 36370\n [Z Motor]
17-03-17 20:45:37.788 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:45:37.798 -07 000000610 INF: FPGA: 'ZDACW 36370' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:45:37.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:37.798 -07 000000438 INF: FPGA: Recv ZDACR 36370
17-03-17 20:45:37.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:37.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:45:37.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:37.958 -07 000000502 INF: FPGA: Recv ZSGSRD 35210
17-03-17 20:45:37.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:37.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:37.968 -07 000000438 INF: FPGA: Recv ZSGSRD 35210
17-03-17 20:45:37.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:37.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:37.978 -07 000000502 INF: FPGA: Recv ZSGSRD 35210
17-03-17 20:45:37.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:37.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:37.988 -07 000000626 INF: FPGA: Recv ZSGSRD 35204
17-03-17 20:45:37.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:37.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:37.998 -07 000000502 INF: FPGA: Recv ZSGSRD 35202
17-03-17 20:45:38.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:38.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:38.008 -07 000000475 INF: FPGA: Recv ZSGSRD 35207
17-03-17 20:45:38.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:38.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:38.018 -07 000000547 INF: FPGA: Recv ZSGSRD 35206
17-03-17 20:45:38.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:38.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:38.028 -07 000000502 INF: FPGA: Recv ZSGSRD 35203
17-03-17 20:45:38.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:38.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:38.038 -07 000000475 INF: FPGA: Recv ZSGSRD 35209
17-03-17 20:45:38.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:38.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:38.048 -07 000000482 INF: FPGA: Recv ZSGSRD 35208
17-03-17 20:45:38.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:38.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:38.058 -07 000000627 INF: FPGA: Recv ZPIEZORD 31126
17-03-17 20:45:38.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:38.068 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.550 V. Piezo Error = -9.0 V.
17-03-17 20:45:38.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35207 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35208 (-165.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35202 (-165.6 uncal um), Max = 35210 (-165.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:45:38.068 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35207, posNoise = 3, negNoise = 5
17-03-17 20:45:38.068 -07 000000610 INF: Z Motor: After move to -0.166491, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:38.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:45:38.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:38.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:38.068 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:38.068 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:38.068 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:45:38.068 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:38.068 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:45:38.068 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:45:38.068 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:45:38.068 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:45:38.068 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:45:38.068 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:45:38.078 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:45:38.078 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:45:38.078 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:45:38.078 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:45:38.088 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:45:38.088 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:45:38.088 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:45:38.088 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:45:38.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 36546 150\n [Camera]
17-03-17 20:45:38.288 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:45:38.708 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:45:38.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:45:38.708 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:38.708 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:45:38.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:45:38.708 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:38.708 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:38.708 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:45:38.708 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:38.708 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2322067272, 0x0, 391868352) start.
17-03-17 20:45:38.898 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36546 804
17-03-17 20:45:39.048 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:45:39.088 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2322067272, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:45:39.088 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:45:39.088 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:39.088 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:39.098 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:45:39.098 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:45:39.098 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:45:39.098 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:39.098 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:39.108 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:45:39.248 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:45:39.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:45:39.248 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:39.358 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:45:39.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:45:39.358 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:39.368 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:39.368 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:39.368 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:45:39.368 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:45:39.438 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-17 20:45:39.438 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:45:39.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 36546 150' command took 4 ms to send, 1348 ms to get response, and 1355 ms overall
17-03-17 20:45:39.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:45:39.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.166500588886113. ------
17-03-17 20:45:39.448 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:39.448 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17289 mm
17-03-17 20:45:39.448 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:45:39.448 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:39.448 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 37767, sync = True, waitForSettling = False)
17-03-17 20:45:39.448 -07 000000547 INF: Z Motor: Moving to -0.172886 mm, started at -0.166501 mm, distance = -6.39 um
17-03-17 20:45:39.448 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:45:39.448 -07 000000475 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 20:45:39.458 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:45:39.458 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:39.458 -07 000000502 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:45:39.468 -07 000000547 INF: FPGA: Xmit ZDACW 37767\n [Z Motor]
17-03-17 20:45:39.468 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:45:39.468 -07 000000475 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:39.468 -07 000000475 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:45:39.468 -07 000000475 INF: Y Motor: Moving 1351 steps-30
17-03-17 20:45:39.468 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:45:39.478 -07 000000547 INF: FPGA: 'ZDACW 37767' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:45:39.478 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:45:39.488 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:45:39.498 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:39.498 -07 000000482 INF: FPGA: Recv ZDACR 37767
17-03-17 20:45:39.508 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:45:39.508 -07 000000547 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 20:45:39.678 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:45:39.678 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 20:45:39.748 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:45:39.748 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:45:39.748 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:39.748 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:45:39.748 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:45:39.748 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:39.748 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:39.748 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:39.748 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-17 20:45:39.758 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:45:39.858 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:45:39.858 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:45:39.878 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.99219,
17-03-17 20:45:39.908 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:39.908 -07 000000626 INF: FPGA: Recv YRDPOS 153256
17-03-17 20:45:39.918 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:45:39.918 -07 000000475 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:39.918 -07 000000475 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 20:45:39.918 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-17 20:45:40.868 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:40.868 -07 000000626 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:45:40.878 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:40.878 -07 000000475 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:40.888 -07 000000475 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:45:40.888 -07 000000475 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:45:40.888 -07 000000475 INF: Y Motor: Moved to 74.8325 after 1437 ms (table move)
17-03-17 20:45:40.888 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172886 mm (DAC = 37767)
17-03-17 20:45:40.888 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:40.898 -07 000000502 INF: FPGA: Recv ZSGSRD 36205
17-03-17 20:45:40.898 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 20:45:40.898 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:40.898 -07 000000480 INF: FPGA: Recv ZSGSRD 36204
17-03-17 20:45:40.908 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:45:40.908 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:40.908 -07 000000502 INF: FPGA: Recv ZSGSRD 36195
17-03-17 20:45:40.918 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:40.918 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:40.918 -07 000000480 INF: FPGA: Recv ZSGSRD 36201
17-03-17 20:45:40.928 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:40.928 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:40.928 -07 000000626 INF: FPGA: Recv ZSGSRD 36209
17-03-17 20:45:40.938 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:40.938 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:40.938 -07 000000627 INF: FPGA: Recv ZSGSRD 36213
17-03-17 20:45:40.948 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:40.948 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:40.948 -07 000000475 INF: FPGA: Recv ZSGSRD 36202
17-03-17 20:45:40.958 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:40.958 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:40.958 -07 000000480 INF: FPGA: Recv ZSGSRD 36204
17-03-17 20:45:40.968 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:40.968 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:40.968 -07 000000626 INF: FPGA: Recv ZSGSRD 36198
17-03-17 20:45:40.978 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:40.978 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:40.978 -07 000000482 INF: FPGA: Recv ZSGSRD 36192
17-03-17 20:45:40.988 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:40.988 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:40.988 -07 000000623 INF: FPGA: Recv ZPIEZORD 32407
17-03-17 20:45:40.998 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:40.998 -07 000000448 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.763 V. Piezo Error = -8.4 V.
17-03-17 20:45:40.998 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36202 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36203 (-172.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 36192 (-171.9 uncal um), Max = 36213 (-172.1 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:45:40.998 -07 000000448 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36202, posNoise = 11, negNoise = 10
17-03-17 20:45:40.998 -07 000000448 INF: Z Motor: After move to -0.172886, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:40.998 -07 000000448 INF: Z Motor: Settle wait time = 1441 ms, measure time = 102 ms (allowed 150 ms), total time = 1543 ms
17-03-17 20:45:40.998 -07 000000448 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:45:41.048 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 20:45:41.048 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:45:41.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:41.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:41.048 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:41.048 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:45:41.048 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:41.048 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:41.058 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:45:41.058 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:45:41.058 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:45:41.058 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:45:41.068 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:45:41.068 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 20:45:41.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:45:41.118 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 20:45:41.318 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 20:45:41.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 20:45:41.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:45:41.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-17 20:45:41.348 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:45:41.358 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 20:45:41.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 20:45:41.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 20:45:41.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:41.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:45:41.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 20:45:41.458 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:41.458 -07 000000547 INF: Autofocus start
17-03-17 20:45:41.458 -07 000000547 INF: MeasureProfile start
17-03-17 20:45:41.458 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:41.468 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:45:41.468 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:45:41.468 -07 000000547 INF: MeasureProfile done
17-03-17 20:45:41.468 -07 000000547 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:45:41.468 -07 000000547 INF: Autofocus finished
17-03-17 20:45:41.668 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:45:41.668 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:45:41.668 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.172892679967165. ----------
17-03-17 20:45:41.668 -07 000000610 INF: Cycle	42	Tile	19	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:45:41.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36300, sync = True, waitForSettling = True)
17-03-17 20:45:41.678 -07 000000610 INF: Z Motor: Moving to -0.166171 mm, started at -0.172893 mm, distance = 6.72 um
17-03-17 20:45:41.678 -07 000000610 INF: FPGA: Xmit ZDACW 36300\n [Z Motor]
17-03-17 20:45:41.678 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:45:41.688 -07 000000610 INF: FPGA: 'ZDACW 36300' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:45:41.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:41.688 -07 000000623 INF: FPGA: Recv ZDACR 36300
17-03-17 20:45:41.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:41.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:45:41.818 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:45:41.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:45:41.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:41.848 -07 000000547 INF: FPGA: Recv ZSGSRD 35154
17-03-17 20:45:41.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:41.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:41.858 -07 000000626 INF: FPGA: Recv ZSGSRD 35159
17-03-17 20:45:41.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:41.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:41.868 -07 000000547 INF: FPGA: Recv ZSGSRD 35159
17-03-17 20:45:41.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:41.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:41.878 -07 000000448 INF: FPGA: Recv ZSGSRD 35155
17-03-17 20:45:41.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:41.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:41.888 -07 000000475 INF: FPGA: Recv ZSGSRD 35161
17-03-17 20:45:41.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:41.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:41.898 -07 000000623 INF: FPGA: Recv ZSGSRD 35161
17-03-17 20:45:41.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:41.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:41.908 -07 000000502 INF: FPGA: Recv ZSGSRD 35162
17-03-17 20:45:41.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:41.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:41.918 -07 000000627 INF: FPGA: Recv ZSGSRD 35152
17-03-17 20:45:41.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:41.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:41.928 -07 000000482 INF: FPGA: Recv ZSGSRD 35150
17-03-17 20:45:41.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:41.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:41.938 -07 000000627 INF: FPGA: Recv ZSGSRD 35162
17-03-17 20:45:41.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:41.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:41.948 -07 000000482 INF: FPGA: Recv ZPIEZORD 31059
17-03-17 20:45:41.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:41.958 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.539 V. Piezo Error = -9.0 V.
17-03-17 20:45:41.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35158 (-165.3 uncal um), Error = 0.9 uncal um, Median = 35159 (-165.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35150 (-165.3 uncal um), Max = 35162 (-165.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:45:41.958 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35158, posNoise = 4, negNoise = 8
17-03-17 20:45:41.958 -07 000000610 INF: Z Motor: After move to -0.166171, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:41.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:45:41.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:41.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:41.958 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:41.958 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:41.958 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:45:41.958 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:45:41.958 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:45:41.958 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:41.958 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:45:41.958 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:45:41.958 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:41.958 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:45:41.968 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:45:41.968 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:45:41.968 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:45:41.968 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:45:41.978 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:45:41.978 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:45:41.978 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:45:41.978 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:45:41.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 36476 150\n [Camera]
17-03-17 20:45:42.178 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:45:42.598 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:45:42.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:45:42.598 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:42.598 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:45:42.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:45:42.598 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:42.598 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:42.598 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:45:42.598 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:42.608 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2322067272, 0x0, 391868352) start.
17-03-17 20:45:42.788 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36476 804
17-03-17 20:45:42.938 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:45:42.978 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2322067272, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:45:42.978 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:45:42.978 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:42.988 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:45:42.988 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:45:42.988 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:42.988 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:42.988 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:45:43.098 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 109 ms.
17-03-17 20:45:43.098 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 500 ms.
17-03-17 20:45:43.138 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:45:43.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:45:43.138 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:43.148 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:45:43.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:45:43.148 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:43.148 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:43.148 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:45:43.148 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:43.148 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:45:43.328 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-17 20:45:43.338 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:45:43.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 36476 150' command took 2 ms to send, 1350 ms to get response, and 1355 ms overall
17-03-17 20:45:43.548 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:45:43.548 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:45:43.548 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:43.548 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:45:43.548 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:45:43.548 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:43.558 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:43.558 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 20:45:43.558 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:45:43.558 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:43.558 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:45:43.598 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:45:43.598 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:45:43.638 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 20:45:43.638 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 20:45:43.648 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:45:43.648 -07 000000431 INF: FPGA: Recv EMCUR 
17-03-17 20:45:43.658 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:43.658 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 20:45:44.158 -07 000000502 INF: FPGA: Recv EMIN
17-03-17 20:45:44.158 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 20:45:44.158 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 20:45:44.158 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-17 20:45:44.168 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:45:44.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:45:44.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.166185802491167. ------
17-03-17 20:45:44.168 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:44.168 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14039 mm
17-03-17 20:45:44.168 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:45:44.168 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:45:44.168 -07 000000482 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 20:45:44.168 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 30668, sync = True, waitForSettling = False)
17-03-17 20:45:44.168 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:44.168 -07 000000547 INF: Z Motor: Moving to -0.140389 mm, started at -0.166186 mm, distance = 25.80 um
17-03-17 20:45:44.178 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:45:44.178 -07 000000547 INF: FPGA: Xmit ZDACW 30668\n [Z Motor]
17-03-17 20:45:44.178 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:45:44.188 -07 000000547 INF: FPGA: 'ZDACW 30668' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:45:44.188 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:44.188 -07 000000627 INF: FPGA: Recv YRDPOS 153258
17-03-17 20:45:44.198 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:45:44.198 -07 000000482 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:44.198 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:45:44.198 -07 000000482 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 20:45:44.198 -07 000000482 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:45:44.208 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:44.208 -07 000000627 INF: FPGA: Recv ZDACR 30668
17-03-17 20:45:44.218 -07 000000482 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:45:44.218 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:45:44.218 -07 000000547 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:45:44.398 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:45:44.398 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 20:45:45.248 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.986717,
17-03-17 20:45:45.838 -07 000000502 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 20:45:45.838 -07 000000482 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1646 ms overall
17-03-17 20:45:45.838 -07 000000482 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:45:45.838 -07 000000482 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 20:45:45.838 -07 000000482 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1646 ms, distance = 14.920 mm, average velocity = 9.064 mm/sec
17-03-17 20:45:46.818 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:45:46.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:45:48.688 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:48.688 -07 000000480 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:45:48.698 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:48.698 -07 000000482 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:48.718 -07 000000482 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:45:48.718 -07 000000482 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 20:45:48.728 -07 000000482 INF: Y Motor: Moved to 59.9111 after 4552 ms
17-03-17 20:45:48.728 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140389 mm (DAC = 30668)
17-03-17 20:45:48.728 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:48.738 -07 000000623 INF: FPGA: Recv ZSGSRD 31148
17-03-17 20:45:48.738 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:45:48.738 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:48.738 -07 000000448 INF: FPGA: Recv ZSGSRD 31151
17-03-17 20:45:48.748 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:48.748 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:48.748 -07 000000569 INF: FPGA: Recv ZSGSRD 31142
17-03-17 20:45:48.758 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:48.758 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:48.758 -07 000000448 INF: FPGA: Recv ZSGSRD 31136
17-03-17 20:45:48.768 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:48.768 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:48.768 -07 000000623 INF: FPGA: Recv ZSGSRD 31144
17-03-17 20:45:48.778 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:48.778 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:48.778 -07 000000448 INF: FPGA: Recv ZSGSRD 31145
17-03-17 20:45:48.788 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:48.788 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:48.788 -07 000000547 INF: FPGA: Recv ZSGSRD 31139
17-03-17 20:45:48.798 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:48.798 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:48.798 -07 000000475 INF: FPGA: Recv ZSGSRD 31141
17-03-17 20:45:48.808 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:48.808 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:48.808 -07 000000480 INF: FPGA: Recv ZSGSRD 31142
17-03-17 20:45:48.818 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:48.818 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:48.818 -07 000000448 INF: FPGA: Recv ZSGSRD 31152
17-03-17 20:45:48.828 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:48.828 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:48.828 -07 000000569 INF: FPGA: Recv ZPIEZORD 26817
17-03-17 20:45:48.838 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:48.838 -07 000000626 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.680 V. Piezo Error = -9.5 V.
17-03-17 20:45:48.838 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.4 um, Read 10 ADC samples: Avg = 31144 (-139.6 uncal um), Error = 0.8 uncal um, Median = 31143 (-139.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31136 (-139.5 uncal um), Max = 31152 (-139.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:45:48.838 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31144, posNoise = 8, negNoise = 8
17-03-17 20:45:48.838 -07 000000626 INF: Z Motor: After move to -0.140389, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:48.838 -07 000000626 INF: Z Motor: Settle wait time = 4556 ms, measure time = 106 ms (allowed 150 ms), total time = 4662 ms
17-03-17 20:45:48.838 -07 000000626 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:45:48.888 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4715 ms
17-03-17 20:45:48.888 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:45:48.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:48.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:48.888 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:48.888 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:48.888 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:45:48.888 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:48.898 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:48.898 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:45:48.918 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 20:45:48.918 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:45:48.918 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:45:48.918 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:45:48.938 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:45:48.938 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 20:45:48.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:45:48.978 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:45:49.178 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:45:49.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:45:49.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:45:49.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-17 20:45:49.218 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:45:49.218 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:45:49.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 20:45:49.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:45:49.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:49.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:45:49.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:45:49.318 -07 000000482 INF: Image SNR check: start
17-03-17 20:45:49.318 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:49.318 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:49.328 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:45:49.328 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:45:49.328 -07 000000482 INF: Image SNR check: pass  [peak (Max-Min)=60.77]
17-03-17 20:45:49.328 -07 000000482 INF: Autofocus start
17-03-17 20:45:49.328 -07 000000482 INF: MeasureProfile start
17-03-17 20:45:49.348 -07 000000482 INF: MeasureProfile done
17-03-17 20:45:49.348 -07 000000482 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:45:49.348 -07 000000482 INF: Autofocus finished
17-03-17 20:45:49.528 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:45:49.528 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:45:49.538 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140399014954138. ----------
17-03-17 20:45:49.538 -07 000000610 INF: Cycle	42	Tile	1	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:45:49.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29176, sync = True, waitForSettling = True)
17-03-17 20:45:49.538 -07 000000610 INF: Z Motor: Moving to -0.133559 mm, started at -0.140399 mm, distance = 6.84 um
17-03-17 20:45:49.538 -07 000000610 INF: FPGA: Xmit ZDACW 29176\n [Z Motor]
17-03-17 20:45:49.538 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:45:49.548 -07 000000610 INF: FPGA: 'ZDACW 29176' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:45:49.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:49.548 -07 000000482 INF: FPGA: Recv ZDACR 29176
17-03-17 20:45:49.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:49.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:45:49.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:49.708 -07 000000623 INF: FPGA: Recv ZSGSRD 30082
17-03-17 20:45:49.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:49.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:49.718 -07 000000626 INF: FPGA: Recv ZSGSRD 30078
17-03-17 20:45:49.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:49.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:49.728 -07 000000569 INF: FPGA: Recv ZSGSRD 30075
17-03-17 20:45:49.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:49.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:49.738 -07 000000626 INF: FPGA: Recv ZSGSRD 30079
17-03-17 20:45:49.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:49.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:49.748 -07 000000569 INF: FPGA: Recv ZSGSRD 30076
17-03-17 20:45:49.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:49.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:49.758 -07 000000482 INF: FPGA: Recv ZSGSRD 30082
17-03-17 20:45:49.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:49.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:49.768 -07 000000480 INF: FPGA: Recv ZSGSRD 30080
17-03-17 20:45:49.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:49.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:49.778 -07 000000626 INF: FPGA: Recv ZSGSRD 30078
17-03-17 20:45:49.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:49.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:49.788 -07 000000480 INF: FPGA: Recv ZSGSRD 30082
17-03-17 20:45:49.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:49.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:49.798 -07 000000626 INF: FPGA: Recv ZSGSRD 30079
17-03-17 20:45:49.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:49.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:49.808 -07 000000480 INF: FPGA: Recv ZPIEZORD 25711
17-03-17 20:45:49.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:49.818 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.452 V. Piezo Error = -9.6 V.
17-03-17 20:45:49.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30079 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30079 (-132.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30075 (-132.7 uncal um), Max = 30082 (-132.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:45:49.818 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30079, posNoise = 3, negNoise = 4
17-03-17 20:45:49.818 -07 000000610 INF: Z Motor: After move to -0.133559, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:49.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:45:49.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:49.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:49.818 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:49.818 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:49.818 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:45:49.818 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:49.818 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:45:49.818 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:45:49.828 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:49.828 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:45:49.828 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:45:49.828 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:45:49.828 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:45:49.828 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:45:49.838 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:45:49.838 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:45:49.848 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 19 ms.
17-03-17 20:45:49.848 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:45:49.848 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:45:49.848 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:45:49.858 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:45:49.858 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 20:45:49.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 29352 150\n [Camera]
17-03-17 20:45:50.058 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:45:50.478 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:45:50.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:45:50.478 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:50.478 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:45:50.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:45:50.478 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:50.478 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:50.478 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:45:50.478 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:50.478 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2322067272, 0x0, 391868352) start.
17-03-17 20:45:50.608 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.985358,
17-03-17 20:45:50.668 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29352 804
17-03-17 20:45:50.818 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:45:50.858 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2322067272, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 20:45:50.858 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 20:45:50.858 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:50.858 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:45:50.858 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:45:50.858 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:50.858 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:50.858 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:45:50.858 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:50.868 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:45:51.018 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:45:51.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:45:51.018 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:51.018 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:45:51.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:45:51.028 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:51.028 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 20:45:51.028 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:51.028 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:51.028 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:45:51.208 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:45:51.208 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:45:51.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 29352 150' command took 4 ms to send, 1348 ms to get response, and 1354 ms overall
17-03-17 20:45:51.218 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:45:51.218 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133557229023163. ------
17-03-17 20:45:51.218 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:51.218 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.14007 mm
17-03-17 20:45:51.218 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:45:51.218 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:51.218 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 30598, sync = True, waitForSettling = False)
17-03-17 20:45:51.218 -07 000000482 INF: Z Motor: Moving to -0.140069 mm, started at -0.133557 mm, distance = -6.51 um
17-03-17 20:45:51.218 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:45:51.218 -07 000000438 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 20:45:51.228 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:45:51.228 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:51.228 -07 000000547 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:45:51.238 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:45:51.238 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:51.238 -07 000000438 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:51.238 -07 000000438 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:45:51.238 -07 000000438 INF: Y Motor: Moving 1330 steps2
17-03-17 20:45:51.248 -07 000000482 INF: FPGA: Xmit ZDACW 30598\n [Z Motor]
17-03-17 20:45:51.248 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:45:51.258 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:45:51.258 -07 000000482 INF: FPGA: 'ZDACW 30598' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:45:51.278 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:51.278 -07 000000502 INF: FPGA: Recv ZDACR 30598
17-03-17 20:45:51.288 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:45:51.288 -07 000000482 INF: Z Motor: MoveAbsStepped took 60 ms (did NOT wait for settling yet))
17-03-17 20:45:51.418 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:45:51.418 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:45:51.418 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:51.428 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:45:51.428 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:45:51.428 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:51.428 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:51.428 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:51.428 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:45:51.438 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:45:51.438 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:45:51.438 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 20:45:51.638 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 20:45:51.638 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 20:45:51.668 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:51.668 -07 000000623 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:45:51.678 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:51.678 -07 000000438 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:51.678 -07 000000438 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:45:51.678 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.831 mm, average velocity = 2.079 mm/sec
17-03-17 20:45:51.808 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:45:51.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:45:52.628 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:52.628 -07 000000626 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:45:52.638 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:52.638 -07 000000438 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:52.658 -07 000000438 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:45:52.658 -07 000000438 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:45:52.658 -07 000000438 INF: Y Motor: Moved to 60.7334 after 1434 ms (table move)
17-03-17 20:45:52.658 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140069 mm (DAC = 30598)
17-03-17 20:45:52.658 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:52.658 -07 000000438 INF: FPGA: Recv ZSGSRD 31094
17-03-17 20:45:52.668 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:45:52.668 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:52.668 -07 000000438 INF: FPGA: Recv ZSGSRD 31095
17-03-17 20:45:52.678 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:52.678 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:52.678 -07 000000438 INF: FPGA: Recv ZSGSRD 31091
17-03-17 20:45:52.688 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:52.688 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:52.688 -07 000000438 INF: FPGA: Recv ZSGSRD 31105
17-03-17 20:45:52.698 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:52.698 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:52.698 -07 000000438 INF: FPGA: Recv ZSGSRD 31093
17-03-17 20:45:52.708 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:52.708 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:52.708 -07 000000012 INF: FPGA: Recv ZSGSRD 31103
17-03-17 20:45:52.718 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:45:52.718 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:52.718 -07 000000012 INF: FPGA: Recv ZSGSRD 31093
17-03-17 20:45:52.728 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:52.728 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:52.728 -07 000000012 INF: FPGA: Recv ZSGSRD 31084
17-03-17 20:45:52.738 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:52.738 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:52.738 -07 000000569 INF: FPGA: Recv ZSGSRD 31099
17-03-17 20:45:52.748 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:52.748 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:52.748 -07 000000012 INF: FPGA: Recv ZSGSRD 31094
17-03-17 20:45:52.758 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:52.758 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:52.758 -07 000000475 INF: FPGA: Recv ZPIEZORD 27069
17-03-17 20:45:52.768 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:52.768 -07 000000433 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.669 V. Piezo Error = -8.9 V.
17-03-17 20:45:52.768 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.1 um, Read 10 ADC samples: Avg = 31095 (-139.3 uncal um), Error = 0.8 uncal um, Median = 31094 (-139.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 31084 (-139.2 uncal um), Max = 31105 (-139.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 20:45:52.768 -07 000000433 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31095, posNoise = 10, negNoise = 11
17-03-17 20:45:52.768 -07 000000433 INF: Z Motor: After move to -0.140069, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:52.768 -07 000000433 INF: Z Motor: Settle wait time = 1437 ms, measure time = 104 ms (allowed 150 ms), total time = 1541 ms
17-03-17 20:45:52.768 -07 000000433 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:45:52.818 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 20:45:52.818 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:45:52.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:52.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:52.818 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:52.818 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:52.818 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:45:52.818 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:52.818 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 20:45:52.818 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:45:52.828 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:45:52.828 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:45:52.838 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:45:52.838 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:45:52.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:45:52.888 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:45:53.088 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:45:53.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:45:53.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:45:53.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2374495728, 0x0, 559484976) start.
17-03-17 20:45:53.128 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:45:53.128 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:45:53.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 20:45:53.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2374495728, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 20:45:53.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:53.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:45:53.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:45:53.228 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:53.228 -07 000000433 INF: Autofocus start
17-03-17 20:45:53.228 -07 000000433 INF: MeasureProfile start
17-03-17 20:45:53.228 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:53.238 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:45:53.238 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:45:53.248 -07 000000433 INF: MeasureProfile done
17-03-17 20:45:53.248 -07 000000433 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:45:53.248 -07 000000433 INF: Autofocus finished
17-03-17 20:45:53.438 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:45:53.438 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:45:53.438 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.140084228559192. ----------
17-03-17 20:45:53.438 -07 000000610 INF: Cycle	42	Tile	2	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:45:53.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29106, sync = True, waitForSettling = True)
17-03-17 20:45:53.448 -07 000000610 INF: Z Motor: Moving to -0.133239 mm, started at -0.140084 mm, distance = 6.85 um
17-03-17 20:45:53.448 -07 000000610 INF: FPGA: Xmit ZDACW 29106\n [Z Motor]
17-03-17 20:45:53.448 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:45:53.458 -07 000000610 INF: FPGA: 'ZDACW 29106' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:45:53.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:53.458 -07 000000480 INF: FPGA: Recv ZDACR 29106
17-03-17 20:45:53.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:53.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:45:53.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:53.618 -07 000000502 INF: FPGA: Recv ZSGSRD 30034
17-03-17 20:45:53.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:53.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:53.628 -07 000000547 INF: FPGA: Recv ZSGSRD 30031
17-03-17 20:45:53.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:53.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:53.638 -07 000000475 INF: FPGA: Recv ZSGSRD 30027
17-03-17 20:45:53.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:53.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:53.648 -07 000000475 INF: FPGA: Recv ZSGSRD 30025
17-03-17 20:45:53.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:53.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:53.658 -07 000000480 INF: FPGA: Recv ZSGSRD 30027
17-03-17 20:45:53.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:53.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:53.668 -07 000000547 INF: FPGA: Recv ZSGSRD 30041
17-03-17 20:45:53.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:53.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:53.678 -07 000000480 INF: FPGA: Recv ZSGSRD 30029
17-03-17 20:45:53.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:53.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:53.688 -07 000000480 INF: FPGA: Recv ZSGSRD 30030
17-03-17 20:45:53.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:53.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:53.698 -07 000000433 INF: FPGA: Recv ZSGSRD 30039
17-03-17 20:45:53.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:53.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:53.708 -07 000000480 INF: FPGA: Recv ZSGSRD 30033
17-03-17 20:45:53.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:53.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:53.718 -07 000000569 INF: FPGA: Recv ZPIEZORD 25667
17-03-17 20:45:53.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:53.728 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.6 V.
17-03-17 20:45:53.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30032 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30030 (-132.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30025 (-132.4 uncal um), Max = 30041 (-132.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:45:53.728 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30032, posNoise = 9, negNoise = 7
17-03-17 20:45:53.728 -07 000000610 INF: Z Motor: After move to -0.133239, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:53.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:45:53.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:53.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:53.728 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:53.728 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:53.728 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:45:53.728 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:53.728 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:45:53.728 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:45:53.728 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 20:45:53.728 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:45:53.728 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:45:53.728 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:45:53.738 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:45:53.738 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:45:53.738 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:45:53.738 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:45:53.748 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:45:53.748 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:45:53.748 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:45:53.748 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:45:53.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 29283 150\n [Camera]
17-03-17 20:45:53.958 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:45:54.368 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:45:54.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:45:54.378 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:54.378 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:54.378 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:45:54.378 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:45:54.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:45:54.378 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:54.488 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:54.488 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:45:54.568 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29283 804
17-03-17 20:45:54.718 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:45:54.768 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:45:54.768 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:45:54.768 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:54.768 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:54.768 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:45:54.888 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 20:45:54.888 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:45:54.888 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:54.888 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:45:54.898 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-17 20:45:54.918 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:45:54.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:45:54.918 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:54.918 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:45:54.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:45:54.928 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:54.928 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:54.928 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:45:54.928 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:54.928 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 20:45:55.108 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:45:55.108 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:45:55.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 29283 150' command took 2 ms to send, 1345 ms to get response, and 1354 ms overall
17-03-17 20:45:55.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:45:55.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.1332552910525. ------
17-03-17 20:45:55.118 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:55.118 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13972 mm
17-03-17 20:45:55.118 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:45:55.118 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:55.118 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30522, sync = True, waitForSettling = False)
17-03-17 20:45:55.118 -07 000000480 INF: Z Motor: Moving to -0.139721 mm, started at -0.133255 mm, distance = -6.47 um
17-03-17 20:45:55.118 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:45:55.118 -07 000000502 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 20:45:55.128 -07 000000480 INF: FPGA: Xmit ZDACW 30522\n [Z Motor]
17-03-17 20:45:55.128 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:55.128 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:45:55.138 -07 000000480 INF: FPGA: 'ZDACW 30522' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:45:55.138 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:55.138 -07 000000462 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:45:55.148 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:45:55.148 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:45:55.148 -07 000000502 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:55.148 -07 000000502 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:45:55.148 -07 000000502 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:45:55.158 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:55.158 -07 000000462 INF: FPGA: Recv ZDACR 30522
17-03-17 20:45:55.168 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:45:55.168 -07 000000480 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:45:55.168 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:45:55.318 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:45:55.318 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:45:55.318 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:55.318 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:55.318 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:45:55.318 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:45:55.318 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:55.328 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:55.328 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:45:55.328 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:45:55.348 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:45:55.348 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:45:55.538 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:45:55.538 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:45:55.578 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:55.578 -07 000000433 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:45:55.588 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:45:55.588 -07 000000502 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:55.588 -07 000000502 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:45:55.588 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.839 mm, average velocity = 2.103 mm/sec
17-03-17 20:45:55.968 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.003063,
17-03-17 20:45:56.538 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:56.538 -07 000000627 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:45:56.548 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:56.548 -07 000000502 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:56.568 -07 000000502 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:45:56.568 -07 000000502 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:45:56.568 -07 000000502 INF: Y Motor: Moved to 61.5640 after 1447 ms (table move)
17-03-17 20:45:56.568 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139721 mm (DAC = 30522)
17-03-17 20:45:56.568 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:56.578 -07 000000502 INF: FPGA: Recv ZSGSRD 31047
17-03-17 20:45:56.578 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:45:56.578 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:56.578 -07 000000502 INF: FPGA: Recv ZSGSRD 31047
17-03-17 20:45:56.588 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:56.588 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:56.588 -07 000000547 INF: FPGA: Recv ZSGSRD 31042
17-03-17 20:45:56.598 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:56.598 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:56.598 -07 000000626 INF: FPGA: Recv ZSGSRD 31043
17-03-17 20:45:56.608 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:56.608 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:56.608 -07 000000626 INF: FPGA: Recv ZSGSRD 31041
17-03-17 20:45:56.618 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:56.618 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:56.618 -07 000000626 INF: FPGA: Recv ZSGSRD 31048
17-03-17 20:45:56.628 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:56.628 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:56.628 -07 000000626 INF: FPGA: Recv ZSGSRD 31036
17-03-17 20:45:56.638 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:56.648 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:56.648 -07 000000480 INF: FPGA: Recv ZSGSRD 31040
17-03-17 20:45:56.658 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:45:56.658 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:56.658 -07 000000433 INF: FPGA: Recv ZSGSRD 31046
17-03-17 20:45:56.668 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:56.688 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:56.688 -07 000000012 INF: FPGA: Recv ZSGSRD 31042
17-03-17 20:45:56.698 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:45:56.718 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:56.718 -07 000000431 INF: FPGA: Recv ZPIEZORD 26996
17-03-17 20:45:56.728 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:45:56.728 -07 000000475 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.657 V. Piezo Error = -8.9 V.
17-03-17 20:45:56.728 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31043 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31042 (-138.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31036 (-138.9 uncal um), Max = 31048 (-139.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:45:56.728 -07 000000475 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31043, posNoise = 5, negNoise = 7
17-03-17 20:45:56.728 -07 000000475 INF: Z Motor: After move to -0.139721, error = -0.000029, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:56.728 -07 000000475 INF: Z Motor: Settle wait time = 1451 ms, measure time = 153 ms (allowed 150 ms), total time = 1604 ms
17-03-17 20:45:56.728 -07 000000475 INF: Z Motor: Warning: Actual position measuring time = 153 ms, longer than max expected time of 150 ms
17-03-17 20:45:56.728 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 20:45:56.728 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:45:56.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:56.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:56.728 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:56.728 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:56.728 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:45:56.728 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:56.728 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:56.728 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:45:56.738 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:45:56.738 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:45:56.748 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:45:56.748 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:45:56.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:45:56.798 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:45:56.808 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:45:56.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:45:56.998 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:45:56.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:45:56.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:45:56.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2351009040, 0x0, 559484976) start.
17-03-17 20:45:57.038 -07 000000431 INF: FPGA: Recv @CAMSNAP 282
17-03-17 20:45:57.038 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:45:57.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 287 ms overall
17-03-17 20:45:57.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2351009040, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:45:57.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:57.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:45:57.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 20:45:57.248 -07 000000480 INF: Autofocus start
17-03-17 20:45:57.248 -07 000000480 INF: MeasureProfile start
17-03-17 20:45:57.248 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:57.248 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:57.258 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:45:57.258 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:45:57.258 -07 000000480 INF: MeasureProfile done
17-03-17 20:45:57.258 -07 000000480 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:45:57.258 -07 000000480 INF: Autofocus finished
17-03-17 20:45:57.458 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:45:57.458 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:45:57.458 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.13975016952782. ----------
17-03-17 20:45:57.458 -07 000000610 INF: Cycle	42	Tile	3	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:45:57.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29017, sync = True, waitForSettling = True)
17-03-17 20:45:57.468 -07 000000610 INF: Z Motor: Moving to -0.132831 mm, started at -0.139750 mm, distance = 6.92 um
17-03-17 20:45:57.468 -07 000000610 INF: FPGA: Xmit ZDACW 29017\n [Z Motor]
17-03-17 20:45:57.468 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:45:57.478 -07 000000610 INF: FPGA: 'ZDACW 29017' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:45:57.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:57.478 -07 000000475 INF: FPGA: Recv ZDACR 29017
17-03-17 20:45:57.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:57.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:45:57.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:57.638 -07 000000569 INF: FPGA: Recv ZSGSRD 29965
17-03-17 20:45:57.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:45:57.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:57.648 -07 000000012 INF: FPGA: Recv ZSGSRD 29967
17-03-17 20:45:57.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:57.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:57.658 -07 000000475 INF: FPGA: Recv ZSGSRD 29967
17-03-17 20:45:57.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:57.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:57.668 -07 000000502 INF: FPGA: Recv ZSGSRD 29968
17-03-17 20:45:57.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:57.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:57.678 -07 000000475 INF: FPGA: Recv ZSGSRD 29969
17-03-17 20:45:57.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:57.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:57.688 -07 000000502 INF: FPGA: Recv ZSGSRD 29973
17-03-17 20:45:57.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:57.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:57.698 -07 000000569 INF: FPGA: Recv ZSGSRD 29974
17-03-17 20:45:57.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:57.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:57.708 -07 000000502 INF: FPGA: Recv ZSGSRD 29964
17-03-17 20:45:57.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:57.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:57.718 -07 000000569 INF: FPGA: Recv ZSGSRD 29961
17-03-17 20:45:57.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:57.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:45:57.728 -07 000000502 INF: FPGA: Recv ZSGSRD 29962
17-03-17 20:45:57.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:57.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:45:57.738 -07 000000547 INF: FPGA: Recv ZPIEZORD 25618
17-03-17 20:45:57.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:45:57.748 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.428 V. Piezo Error = -9.6 V.
17-03-17 20:45:57.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29967 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29967 (-132.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29961 (-132.0 uncal um), Max = 29974 (-132.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:45:57.748 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29967, posNoise = 7, negNoise = 6
17-03-17 20:45:57.748 -07 000000610 INF: Z Motor: After move to -0.132831, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:45:57.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:45:57.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:45:57.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:45:57.748 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:45:57.748 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:45:57.748 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:45:57.748 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:45:57.748 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:45:57.748 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:45:57.748 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:45:57.748 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:45:57.748 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:45:57.748 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:45:57.758 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:45:57.758 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:45:57.758 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:45:57.758 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:45:57.768 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:45:57.768 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:45:57.768 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:45:57.768 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:45:57.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 29194 150\n [Camera]
17-03-17 20:45:57.968 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:45:58.388 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:45:58.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:45:58.388 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:58.388 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:45:58.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:45:58.388 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:58.398 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:58.398 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) start.
17-03-17 20:45:58.408 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:58.408 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:45:58.578 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29194 804
17-03-17 20:45:58.728 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:45:58.778 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 579324120, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:45:58.778 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:45:58.778 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:58.778 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:58.778 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:45:58.778 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:45:58.778 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:45:58.778 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:58.788 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:58.788 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:45:58.928 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:45:58.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:45:58.928 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:45:58.928 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:45:58.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:45:58.928 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:45:58.938 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:45:58.938 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:45:58.938 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:45:58.938 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 20:45:59.118 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:45:59.118 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:45:59.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 29194 150' command took 2 ms to send, 1347 ms to get response, and 1354 ms overall
17-03-17 20:45:59.118 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:45:59.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132837717263286. ------
17-03-17 20:45:59.128 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:45:59.128 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13907 mm
17-03-17 20:45:59.128 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:45:59.128 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:45:59.128 -07 000000627 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 20:45:59.128 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:45:59.128 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30379, sync = True, waitForSettling = False)
17-03-17 20:45:59.128 -07 000000431 INF: Z Motor: Moving to -0.139066 mm, started at -0.132838 mm, distance = -6.23 um
17-03-17 20:45:59.138 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:45:59.138 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:59.138 -07 000000012 INF: FPGA: Recv YRDPOS 126084
17-03-17 20:45:59.148 -07 000000431 INF: FPGA: Xmit ZDACW 30379\n [Z Motor]
17-03-17 20:45:59.148 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:45:59.148 -07 000000627 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:59.148 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:45:59.148 -07 000000627 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:45:59.148 -07 000000627 INF: Y Motor: Moving 1341 steps-18
17-03-17 20:45:59.158 -07 000000431 INF: FPGA: 'ZDACW 30379' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:45:59.158 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:45:59.168 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:45:59.178 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:45:59.178 -07 000000502 INF: FPGA: Recv ZDACR 30379
17-03-17 20:45:59.188 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:45:59.188 -07 000000431 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:45:59.318 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:45:59.318 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:45:59.318 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:59.318 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:45:59.328 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:45:59.328 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:45:59.328 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:45:59.328 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:45:59.328 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:45:59.328 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:45:59.358 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:45:59.358 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:45:59.538 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 20:45:59.538 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:45:59.578 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:45:59.578 -07 000000502 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:45:59.588 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:45:59.588 -07 000000627 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:45:59.588 -07 000000627 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:45:59.588 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-17 20:46:00.538 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:00.538 -07 000000433 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:46:00.548 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:00.548 -07 000000627 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:00.568 -07 000000627 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:46:00.568 -07 000000627 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:46:00.568 -07 000000627 INF: Y Motor: Moved to 62.3955 after 1436 ms (table move)
17-03-17 20:46:00.568 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139066 mm (DAC = 30379)
17-03-17 20:46:00.568 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:00.568 -07 000000502 INF: FPGA: Recv ZSGSRD 30938
17-03-17 20:46:00.578 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:46:00.578 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:00.578 -07 000000448 INF: FPGA: Recv ZSGSRD 30935
17-03-17 20:46:00.588 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:00.588 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:00.588 -07 000000462 INF: FPGA: Recv ZSGSRD 30938
17-03-17 20:46:00.598 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:00.598 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:00.598 -07 000000627 INF: FPGA: Recv ZSGSRD 30942
17-03-17 20:46:00.608 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:00.608 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:00.608 -07 000000431 INF: FPGA: Recv ZSGSRD 30941
17-03-17 20:46:00.618 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:00.618 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:00.618 -07 000000433 INF: FPGA: Recv ZSGSRD 30929
17-03-17 20:46:00.628 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:00.628 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:00.628 -07 000000502 INF: FPGA: Recv ZSGSRD 30930
17-03-17 20:46:00.638 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:00.638 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:00.638 -07 000000569 INF: FPGA: Recv ZSGSRD 30935
17-03-17 20:46:00.648 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:00.648 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:00.648 -07 000000012 INF: FPGA: Recv ZSGSRD 30937
17-03-17 20:46:00.658 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:00.658 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:00.658 -07 000000448 INF: FPGA: Recv ZSGSRD 30944
17-03-17 20:46:00.668 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:00.668 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:00.668 -07 000000502 INF: FPGA: Recv ZPIEZORD 26890
17-03-17 20:46:00.678 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:00.678 -07 000000626 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.636 V. Piezo Error = -8.9 V.
17-03-17 20:46:00.678 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30937 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30938 (-138.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30929 (-138.2 uncal um), Max = 30944 (-138.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:46:00.678 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30937, posNoise = 7, negNoise = 8
17-03-17 20:46:00.678 -07 000000626 INF: Z Motor: After move to -0.139066, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:00.678 -07 000000626 INF: Z Motor: Settle wait time = 1437 ms, measure time = 105 ms (allowed 150 ms), total time = 1542 ms
17-03-17 20:46:00.678 -07 000000626 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:46:00.728 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 20:46:00.728 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:46:00.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:00.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:00.728 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:00.728 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:00.728 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:46:00.728 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:00.728 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:00.728 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:46:00.738 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:46:00.738 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:46:00.748 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:46:00.748 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:46:00.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:46:00.798 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:46:00.998 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:46:00.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:46:00.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:46:01.098 -07 000000462 INF: FPGA: Recv @CAMSNAP 282
17-03-17 20:46:01.098 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 20:46:01.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 349 ms to get response, and 351 ms overall
17-03-17 20:46:01.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614877512, 0x0, 559484976) start.
17-03-17 20:46:01.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614877512, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 20:46:01.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:01.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:46:01.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 228 ms.
17-03-17 20:46:01.298 -07 000000627 INF: Autofocus start
17-03-17 20:46:01.298 -07 000000627 INF: MeasureProfile start
17-03-17 20:46:01.298 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:01.298 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:01.308 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:46:01.308 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:46:01.308 -07 000000627 INF: MeasureProfile done
17-03-17 20:46:01.308 -07 000000627 INF: X=32  Z correction [um]=0.1299841
17-03-17 20:46:01.308 -07 000000627 INF: Autofocus finished
17-03-17 20:46:01.418 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.042558,
17-03-17 20:46:01.508 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:46:01.508 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:46:01.508 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139069203040794. ----------
17-03-17 20:46:01.518 -07 000000610 INF: Cycle	42	Tile	4	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:46:01.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28920, sync = True, waitForSettling = True)
17-03-17 20:46:01.518 -07 000000610 INF: Z Motor: Moving to -0.132387 mm, started at -0.139069 mm, distance = 6.68 um
17-03-17 20:46:01.518 -07 000000610 INF: FPGA: Xmit ZDACW 28920\n [Z Motor]
17-03-17 20:46:01.518 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 20:46:01.528 -07 000000610 INF: FPGA: 'ZDACW 28920' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:46:01.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:01.528 -07 000000569 INF: FPGA: Recv ZDACR 28920
17-03-17 20:46:01.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:01.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:46:01.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:01.688 -07 000000627 INF: FPGA: Recv ZSGSRD 29901
17-03-17 20:46:01.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:01.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:01.698 -07 000000433 INF: FPGA: Recv ZSGSRD 29893
17-03-17 20:46:01.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:01.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:01.708 -07 000000627 INF: FPGA: Recv ZSGSRD 29899
17-03-17 20:46:01.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:01.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:01.728 -07 000000448 INF: FPGA: Recv ZSGSRD 29897
17-03-17 20:46:01.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:46:01.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:01.738 -07 000000462 INF: FPGA: Recv ZSGSRD 29900
17-03-17 20:46:01.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:01.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:01.748 -07 000000626 INF: FPGA: Recv ZSGSRD 29898
17-03-17 20:46:01.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:46:01.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:01.758 -07 000000012 INF: FPGA: Recv ZSGSRD 29901
17-03-17 20:46:01.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:01.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:01.768 -07 000000626 INF: FPGA: Recv ZSGSRD 29898
17-03-17 20:46:01.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:01.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:01.778 -07 000000448 INF: FPGA: Recv ZSGSRD 29894
17-03-17 20:46:01.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:01.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:01.788 -07 000000433 INF: FPGA: Recv ZSGSRD 29902
17-03-17 20:46:01.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:01.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:01.798 -07 000000627 INF: FPGA: Recv ZPIEZORD 25556
17-03-17 20:46:01.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:01.808 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.413 V. Piezo Error = -9.5 V.
17-03-17 20:46:01.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29898 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29898 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29893 (-131.6 uncal um), Max = 29902 (-131.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:46:01.808 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29898, posNoise = 4, negNoise = 5
17-03-17 20:46:01.808 -07 000000610 INF: Z Motor: After move to -0.132387, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:01.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 20:46:01.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:01.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:01.808 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:01.808 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:01.808 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:46:01.808 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:46:01.808 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:46:01.808 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:01.808 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:46:01.808 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:46:01.808 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:01.808 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:46:01.808 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:46:01.808 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:46:01.808 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:46:01.808 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:46:01.818 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:46:01.818 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:46:01.818 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:46:01.818 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:46:01.818 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:46:01.818 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:46:01.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 29097 150\n [Camera]
17-03-17 20:46:02.028 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:46:02.448 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:46:02.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:46:02.448 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:02.448 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:46:02.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:46:02.448 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:02.448 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:02.448 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:46:02.458 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:02.458 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 20:46:02.638 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29097 805
17-03-17 20:46:02.788 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:46:02.828 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 20:46:02.828 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:46:02.828 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:02.828 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:02.828 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:46:02.828 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:46:02.828 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:46:02.828 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:02.838 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:02.848 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:46:02.988 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:46:02.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:46:02.988 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:02.988 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:46:02.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:46:02.998 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:02.998 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:02.998 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:46:02.998 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:02.998 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) start.
17-03-17 20:46:03.178 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-17 20:46:03.178 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:46:03.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 29097 150' command took 2 ms to send, 1348 ms to get response, and 1355 ms overall
17-03-17 20:46:03.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:46:03.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132394446625504. ------
17-03-17 20:46:03.188 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:03.188 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13908 mm
17-03-17 20:46:03.188 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:46:03.188 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:03.188 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:46:03.188 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30382, sync = True, waitForSettling = False)
17-03-17 20:46:03.188 -07 000000626 INF: Z Motor: Moving to -0.139080 mm, started at -0.132394 mm, distance = -6.69 um
17-03-17 20:46:03.188 -07 000000433 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 20:46:03.198 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:46:03.198 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:03.198 -07 000000431 INF: FPGA: Recv YRDPOS 127787
17-03-17 20:46:03.208 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:03.208 -07 000000433 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:03.208 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:46:03.208 -07 000000433 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:46:03.208 -07 000000433 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:46:03.218 -07 000000626 INF: FPGA: Xmit ZDACW 30382\n [Z Motor]
17-03-17 20:46:03.218 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:46:03.228 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:46:03.228 -07 000000626 INF: FPGA: 'ZDACW 30382' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:46:03.238 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:03.248 -07 000000431 INF: FPGA: Recv ZDACR 30382
17-03-17 20:46:03.248 -07 000000626 INF: FPGA: 'ZDACR' command took 7 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:46:03.248 -07 000000626 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 20:46:03.388 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:46:03.388 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:46:03.388 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:03.388 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 20:46:03.388 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:46:03.388 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:03.388 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:46:03.388 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:46:03.388 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:46:03.398 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:46:03.408 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:46:03.408 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:46:03.598 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 20:46:03.598 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:46:03.638 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:03.638 -07 000000626 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:46:03.648 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:46:03.648 -07 000000433 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:03.648 -07 000000433 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:46:03.648 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.119 mm/sec
17-03-17 20:46:04.598 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:04.598 -07 000000569 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:46:04.608 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:04.608 -07 000000433 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:04.628 -07 000000433 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:46:04.628 -07 000000433 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:46:04.628 -07 000000433 INF: Y Motor: Moved to 63.2241 after 1432 ms (table move)
17-03-17 20:46:04.628 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139080 mm (DAC = 30382)
17-03-17 20:46:04.628 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:04.628 -07 000000433 INF: FPGA: Recv ZSGSRD 30944
17-03-17 20:46:04.638 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:46:04.638 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:04.638 -07 000000438 INF: FPGA: Recv ZSGSRD 30940
17-03-17 20:46:04.648 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:04.648 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:04.648 -07 000000438 INF: FPGA: Recv ZSGSRD 30934
17-03-17 20:46:04.658 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:04.658 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:04.658 -07 000000438 INF: FPGA: Recv ZSGSRD 30944
17-03-17 20:46:04.668 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:04.668 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:04.668 -07 000000448 INF: FPGA: Recv ZSGSRD 30941
17-03-17 20:46:04.678 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:04.678 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:04.678 -07 000000448 INF: FPGA: Recv ZSGSRD 30938
17-03-17 20:46:04.688 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:04.688 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:04.688 -07 000000627 INF: FPGA: Recv ZSGSRD 30946
17-03-17 20:46:04.698 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:04.698 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:04.698 -07 000000438 INF: FPGA: Recv ZSGSRD 30931
17-03-17 20:46:04.708 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:04.708 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:04.708 -07 000000431 INF: FPGA: Recv ZSGSRD 30937
17-03-17 20:46:04.718 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:04.718 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:04.718 -07 000000623 INF: FPGA: Recv ZSGSRD 30936
17-03-17 20:46:04.728 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:04.728 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:04.728 -07 000000448 INF: FPGA: Recv ZPIEZORD 26950
17-03-17 20:46:04.738 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:04.738 -07 000000502 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.636 V. Piezo Error = -8.8 V.
17-03-17 20:46:04.738 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30939 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30939 (-138.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30931 (-138.2 uncal um), Max = 30946 (-138.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:46:04.738 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30939, posNoise = 7, negNoise = 8
17-03-17 20:46:04.738 -07 000000502 INF: Z Motor: After move to -0.139080, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:04.738 -07 000000502 INF: Z Motor: Settle wait time = 1437 ms, measure time = 103 ms (allowed 150 ms), total time = 1540 ms
17-03-17 20:46:04.738 -07 000000502 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:46:04.788 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 20:46:04.788 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:46:04.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:04.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:04.788 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:04.788 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:46:04.788 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:04.788 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:04.788 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:04.788 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:46:04.798 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:46:04.798 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:46:04.808 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:46:04.808 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:46:04.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:46:04.858 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:46:05.058 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:46:05.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:46:05.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:46:05.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 600735616, 0x0, 559484976) start.
17-03-17 20:46:05.098 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:46:05.098 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 20:46:05.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:46:05.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 600735616, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:46:05.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:05.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:46:05.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:46:05.198 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:05.198 -07 000000431 INF: Autofocus start
17-03-17 20:46:05.198 -07 000000431 INF: MeasureProfile start
17-03-17 20:46:05.198 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:05.208 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:46:05.208 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:46:05.218 -07 000000431 INF: MeasureProfile done
17-03-17 20:46:05.218 -07 000000431 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:46:05.218 -07 000000431 INF: Autofocus finished
17-03-17 20:46:05.408 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:46:05.408 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:46:05.418 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.139082051465077. ----------
17-03-17 20:46:05.418 -07 000000610 INF: Cycle	42	Tile	5	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:46:05.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28889, sync = True, waitForSettling = True)
17-03-17 20:46:05.418 -07 000000610 INF: Z Motor: Moving to -0.132245 mm, started at -0.139082 mm, distance = 6.84 um
17-03-17 20:46:05.418 -07 000000610 INF: FPGA: Xmit ZDACW 28889\n [Z Motor]
17-03-17 20:46:05.418 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:46:05.428 -07 000000610 INF: FPGA: 'ZDACW 28889' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:46:05.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:05.428 -07 000000569 INF: FPGA: Recv ZDACR 28889
17-03-17 20:46:05.438 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:05.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:46:05.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:05.588 -07 000000569 INF: FPGA: Recv ZSGSRD 29875
17-03-17 20:46:05.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:05.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:05.598 -07 000000012 INF: FPGA: Recv ZSGSRD 29883
17-03-17 20:46:05.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:05.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:05.608 -07 000000569 INF: FPGA: Recv ZSGSRD 29877
17-03-17 20:46:05.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:05.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:05.618 -07 000000431 INF: FPGA: Recv ZSGSRD 29873
17-03-17 20:46:05.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:05.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:05.628 -07 000000433 INF: FPGA: Recv ZSGSRD 29877
17-03-17 20:46:05.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:05.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:05.638 -07 000000438 INF: FPGA: Recv ZSGSRD 29874
17-03-17 20:46:05.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:05.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:05.648 -07 000000433 INF: FPGA: Recv ZSGSRD 29873
17-03-17 20:46:05.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:05.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:05.658 -07 000000438 INF: FPGA: Recv ZSGSRD 29877
17-03-17 20:46:05.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:05.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:05.668 -07 000000502 INF: FPGA: Recv ZSGSRD 29877
17-03-17 20:46:05.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:05.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:05.678 -07 000000012 INF: FPGA: Recv ZSGSRD 29877
17-03-17 20:46:05.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:05.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:05.688 -07 000000569 INF: FPGA: Recv ZPIEZORD 25561
17-03-17 20:46:05.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:05.698 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -9.5 V.
17-03-17 20:46:05.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29876 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29877 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29873 (-131.4 uncal um), Max = 29883 (-131.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:46:05.698 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29876, posNoise = 7, negNoise = 3
17-03-17 20:46:05.698 -07 000000610 INF: Z Motor: After move to -0.132245, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:05.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:46:05.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:05.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:05.698 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:05.698 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:05.698 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:46:05.698 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:46:05.698 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:46:05.698 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:46:05.698 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:46:05.698 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:05.698 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:05.698 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:46:05.708 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:46:05.708 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:46:05.708 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:46:05.708 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:46:05.718 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:46:05.718 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:46:05.718 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:46:05.718 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:46:05.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 29066 150\n [Camera]
17-03-17 20:46:05.918 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:46:06.338 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:46:06.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:46:06.338 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:06.338 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:06.338 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:46:06.338 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:46:06.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:46:06.348 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:06.348 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:06.348 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:46:06.528 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29066 804
17-03-17 20:46:06.678 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:46:06.718 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:46:06.718 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:46:06.718 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:06.718 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:46:06.718 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:46:06.718 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:06.728 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:06.728 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:06.728 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:46:06.728 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:46:06.778 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.039839,
17-03-17 20:46:06.808 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:46:06.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:46:06.878 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:46:06.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:46:06.878 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:06.998 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:46:06.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:46:06.998 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:07.008 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:07.008 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:07.008 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 20:46:07.008 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:46:07.068 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-17 20:46:07.078 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:46:07.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 29066 150' command took 2 ms to send, 1350 ms to get response, and 1355 ms overall
17-03-17 20:46:07.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:46:07.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.132253113958385. ------
17-03-17 20:46:07.078 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13878 mm
17-03-17 20:46:07.078 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:46:07.078 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30317, sync = True, waitForSettling = False)
17-03-17 20:46:07.078 -07 000000623 INF: Z Motor: Moving to -0.138782 mm, started at -0.132253 mm, distance = -6.53 um
17-03-17 20:46:07.078 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:46:07.078 -07 000000448 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 20:46:07.088 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:07.088 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:07.098 -07 000000623 INF: FPGA: Xmit ZDACW 30317\n [Z Motor]
17-03-17 20:46:07.098 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:46:07.098 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:46:07.108 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:07.108 -07 000000623 INF: FPGA: 'ZDACW 30317' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:46:07.108 -07 000000480 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:46:07.118 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:46:07.118 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:46:07.118 -07 000000448 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:07.118 -07 000000448 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:46:07.118 -07 000000448 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:46:07.128 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:07.128 -07 000000569 INF: FPGA: Recv ZDACR 30317
17-03-17 20:46:07.138 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:46:07.138 -07 000000623 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:46:07.138 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:46:07.318 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:46:07.318 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:46:07.388 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:46:07.388 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:46:07.388 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:07.398 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:46:07.398 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:46:07.398 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:46:07.398 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:07.398 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:46:07.398 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:46:07.398 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-17 20:46:07.508 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:46:07.518 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 394 ms overall
17-03-17 20:46:07.548 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:07.558 -07 000000502 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:46:07.558 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:46:07.558 -07 000000448 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:07.558 -07 000000448 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 20:46:07.558 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.128 mm/sec
17-03-17 20:46:08.508 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:08.508 -07 000000480 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:46:08.518 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:08.518 -07 000000448 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:08.528 -07 000000448 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:46:08.538 -07 000000448 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:46:08.538 -07 000000448 INF: Y Motor: Moved to 64.0571 after 1450 ms (table move)
17-03-17 20:46:08.538 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138782 mm (DAC = 30317)
17-03-17 20:46:08.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:08.538 -07 000000502 INF: FPGA: Recv ZSGSRD 30902
17-03-17 20:46:08.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:46:08.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:08.548 -07 000000623 INF: FPGA: Recv ZSGSRD 30891
17-03-17 20:46:08.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:08.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:08.558 -07 000000623 INF: FPGA: Recv ZSGSRD 30893
17-03-17 20:46:08.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:08.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:08.568 -07 000000502 INF: FPGA: Recv ZSGSRD 30895
17-03-17 20:46:08.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:08.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:08.578 -07 000000502 INF: FPGA: Recv ZSGSRD 30890
17-03-17 20:46:08.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:08.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:08.588 -07 000000623 INF: FPGA: Recv ZSGSRD 30891
17-03-17 20:46:08.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:08.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:08.598 -07 000000433 INF: FPGA: Recv ZSGSRD 30888
17-03-17 20:46:08.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:08.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:08.608 -07 000000627 INF: FPGA: Recv ZSGSRD 30896
17-03-17 20:46:08.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:08.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:08.618 -07 000000438 INF: FPGA: Recv ZSGSRD 30898
17-03-17 20:46:08.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:08.628 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:08.628 -07 000000623 INF: FPGA: Recv ZSGSRD 30896
17-03-17 20:46:08.638 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:08.638 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:08.638 -07 000000623 INF: FPGA: Recv ZPIEZORD 26856
17-03-17 20:46:08.648 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:08.648 -07 000000431 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.626 V. Piezo Error = -8.9 V.
17-03-17 20:46:08.648 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30894 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30894 (-138.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30888 (-138.0 uncal um), Max = 30902 (-138.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:46:08.648 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30894, posNoise = 8, negNoise = 6
17-03-17 20:46:08.648 -07 000000431 INF: Z Motor: After move to -0.138782, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:08.648 -07 000000431 INF: Z Motor: Settle wait time = 1456 ms, measure time = 106 ms (allowed 150 ms), total time = 1562 ms
17-03-17 20:46:08.648 -07 000000431 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:46:08.698 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-17 20:46:08.698 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:46:08.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:08.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:08.698 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:08.698 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:46:08.698 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:08.698 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:08.698 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:46:08.698 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:08.708 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:46:08.708 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:46:08.718 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 20:46:08.718 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 20:46:08.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:46:08.758 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:46:08.958 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:46:08.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:46:08.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:46:08.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2350877912, 0x0, 559484976) start.
17-03-17 20:46:08.998 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:46:08.998 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 20:46:08.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 20:46:09.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2350877912, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:46:09.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:09.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:46:09.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:46:09.198 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:09.198 -07 000000480 INF: Autofocus start
17-03-17 20:46:09.198 -07 000000480 INF: MeasureProfile start
17-03-17 20:46:09.198 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:09.208 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:46:09.208 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:46:09.208 -07 000000480 INF: MeasureProfile done
17-03-17 20:46:09.208 -07 000000480 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:46:09.208 -07 000000480 INF: Autofocus finished
17-03-17 20:46:09.408 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:46:09.408 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:46:09.408 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138792961918698. ----------
17-03-17 20:46:09.418 -07 000000610 INF: Cycle	42	Tile	6	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:46:09.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28824, sync = True, waitForSettling = True)
17-03-17 20:46:09.418 -07 000000610 INF: Z Motor: Moving to -0.131948 mm, started at -0.138793 mm, distance = 6.85 um
17-03-17 20:46:09.418 -07 000000610 INF: FPGA: Xmit ZDACW 28824\n [Z Motor]
17-03-17 20:46:09.418 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:46:09.428 -07 000000610 INF: FPGA: 'ZDACW 28824' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:46:09.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:09.428 -07 000000480 INF: FPGA: Recv ZDACR 28824
17-03-17 20:46:09.438 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:09.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:46:09.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:09.588 -07 000000480 INF: FPGA: Recv ZSGSRD 29829
17-03-17 20:46:09.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:09.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:09.598 -07 000000623 INF: FPGA: Recv ZSGSRD 29828
17-03-17 20:46:09.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:09.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:09.608 -07 000000627 INF: FPGA: Recv ZSGSRD 29826
17-03-17 20:46:09.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:09.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:09.618 -07 000000438 INF: FPGA: Recv ZSGSRD 29825
17-03-17 20:46:09.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:09.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:09.628 -07 000000627 INF: FPGA: Recv ZSGSRD 29832
17-03-17 20:46:09.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:09.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:09.638 -07 000000623 INF: FPGA: Recv ZSGSRD 29824
17-03-17 20:46:09.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:09.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:09.648 -07 000000480 INF: FPGA: Recv ZSGSRD 29834
17-03-17 20:46:09.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:09.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:09.658 -07 000000438 INF: FPGA: Recv ZSGSRD 29827
17-03-17 20:46:09.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:09.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:09.668 -07 000000627 INF: FPGA: Recv ZSGSRD 29825
17-03-17 20:46:09.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:09.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:09.678 -07 000000623 INF: FPGA: Recv ZSGSRD 29829
17-03-17 20:46:09.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:09.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:09.688 -07 000000627 INF: FPGA: Recv ZPIEZORD 25497
17-03-17 20:46:09.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:09.698 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -9.5 V.
17-03-17 20:46:09.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29828 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29828 (-131.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29824 (-131.1 uncal um), Max = 29834 (-131.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:46:09.698 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29828, posNoise = 6, negNoise = 4
17-03-17 20:46:09.698 -07 000000610 INF: Z Motor: After move to -0.131948, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:09.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:46:09.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:09.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:09.698 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:09.698 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:09.698 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:46:09.698 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:09.698 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:46:09.698 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:46:09.698 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:09.698 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:46:09.698 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:46:09.698 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:46:09.708 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:46:09.708 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:46:09.708 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:46:09.708 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:46:09.718 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:46:09.718 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:46:09.718 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:46:09.718 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:46:09.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 29001 150\n [Camera]
17-03-17 20:46:09.918 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:46:10.338 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:46:10.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:46:10.338 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:10.338 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:10.338 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:46:10.338 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:46:10.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:46:10.338 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:10.458 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:10.458 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:46:10.528 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29001 804
17-03-17 20:46:10.678 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:46:10.718 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 20:46:10.718 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:46:10.718 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:10.718 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:46:10.718 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:46:10.828 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 20:46:10.828 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 20:46:10.828 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:10.828 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:46:10.838 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 494 ms.
17-03-17 20:46:10.878 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:46:10.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:46:10.878 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:10.878 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:46:10.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:46:10.888 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:10.888 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:10.888 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:46:10.888 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:10.888 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 20:46:11.068 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-17 20:46:11.068 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:46:11.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 29001 150' command took 2 ms to send, 1348 ms to get response, and 1354 ms overall
17-03-17 20:46:11.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:46:11.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131944751775581. ------
17-03-17 20:46:11.078 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:11.078 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13856 mm
17-03-17 20:46:11.078 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:46:11.078 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:11.078 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:46:11.088 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:46:11.088 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 30268, sync = True, waitForSettling = False)
17-03-17 20:46:11.088 -07 000000433 INF: Z Motor: Moving to -0.138558 mm, started at -0.131945 mm, distance = -6.61 um
17-03-17 20:46:11.088 -07 000000433 INF: FPGA: Xmit ZDACW 30268\n [Z Motor]
17-03-17 20:46:11.088 -07 000000623 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 20:46:11.088 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:46:11.098 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:11.098 -07 000000433 INF: FPGA: 'ZDACW 30268' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:11.098 -07 000000438 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:46:11.108 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:46:11.108 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:46:11.108 -07 000000623 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:11.108 -07 000000623 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:46:11.108 -07 000000623 INF: Y Motor: Moving 1337 steps-11
17-03-17 20:46:11.118 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:11.118 -07 000000502 INF: FPGA: Recv ZDACR 30268
17-03-17 20:46:11.128 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:46:11.128 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:46:11.128 -07 000000433 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 20:46:11.278 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:46:11.278 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:46:11.278 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:11.278 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 20:46:11.278 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:46:11.278 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:11.288 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:11.288 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:46:11.288 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:11.288 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:46:11.308 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:46:11.308 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:46:11.498 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 20:46:11.498 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:46:11.538 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:11.538 -07 000000502 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:46:11.548 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:46:11.548 -07 000000623 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:11.548 -07 000000623 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:46:11.548 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 20:46:11.808 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:46:11.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:46:12.138 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.015368,
17-03-17 20:46:12.498 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:12.498 -07 000000502 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:46:12.508 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:12.508 -07 000000623 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:12.528 -07 000000623 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:46:12.528 -07 000000623 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:46:12.528 -07 000000623 INF: Y Motor: Moved to 64.8789 after 1443 ms (table move)
17-03-17 20:46:12.528 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138558 mm (DAC = 30268)
17-03-17 20:46:12.528 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:12.528 -07 000000433 INF: FPGA: Recv ZSGSRD 30865
17-03-17 20:46:12.538 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:46:12.538 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:12.538 -07 000000502 INF: FPGA: Recv ZSGSRD 30859
17-03-17 20:46:12.548 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:12.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:12.548 -07 000000569 INF: FPGA: Recv ZSGSRD 30855
17-03-17 20:46:12.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:12.558 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:12.558 -07 000000012 INF: FPGA: Recv ZSGSRD 30865
17-03-17 20:46:12.568 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:12.568 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:12.568 -07 000000569 INF: FPGA: Recv ZSGSRD 30864
17-03-17 20:46:12.578 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:12.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:12.578 -07 000000012 INF: FPGA: Recv ZSGSRD 30863
17-03-17 20:46:12.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:46:12.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:12.588 -07 000000438 INF: FPGA: Recv ZSGSRD 30860
17-03-17 20:46:12.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:12.598 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:12.598 -07 000000569 INF: FPGA: Recv ZSGSRD 30852
17-03-17 20:46:12.608 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:12.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:12.608 -07 000000448 INF: FPGA: Recv ZSGSRD 30857
17-03-17 20:46:12.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:12.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:12.618 -07 000000012 INF: FPGA: Recv ZSGSRD 30858
17-03-17 20:46:12.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:12.628 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:12.628 -07 000000433 INF: FPGA: Recv ZPIEZORD 26887
17-03-17 20:46:12.638 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:12.638 -07 000000431 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.619 V. Piezo Error = -8.7 V.
17-03-17 20:46:12.638 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30860 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30860 (-137.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30852 (-137.7 uncal um), Max = 30865 (-137.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:46:12.638 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30860, posNoise = 5, negNoise = 8
17-03-17 20:46:12.638 -07 000000431 INF: Z Motor: After move to -0.138558, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:12.638 -07 000000431 INF: Z Motor: Settle wait time = 1446 ms, measure time = 104 ms (allowed 150 ms), total time = 1550 ms
17-03-17 20:46:12.638 -07 000000431 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:46:12.688 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 20:46:12.688 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:46:12.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:12.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:12.688 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:12.688 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:46:12.688 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:12.688 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:12.688 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:12.688 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:46:12.698 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:46:12.698 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:46:12.708 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:46:12.708 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:46:12.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:46:12.748 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:46:12.948 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:46:12.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:46:12.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:46:12.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2350877912, 0x0, 559484976) start.
17-03-17 20:46:12.988 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:46:12.988 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 20:46:12.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 20:46:13.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2350877912, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 20:46:13.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:13.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:46:13.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 20:46:13.088 -07 000000569 INF: Autofocus start
17-03-17 20:46:13.088 -07 000000569 INF: MeasureProfile start
17-03-17 20:46:13.098 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:13.098 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:13.108 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:13.108 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:46:13.108 -07 000000569 INF: MeasureProfile done
17-03-17 20:46:13.108 -07 000000569 INF: X=11  Z correction [um]=0.02896596
17-03-17 20:46:13.108 -07 000000569 INF: Autofocus finished
17-03-17 20:46:13.308 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:46:13.308 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:46:13.308 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.138574538705878. ----------
17-03-17 20:46:13.308 -07 000000610 INF: Cycle	42	Tile	7	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:46:13.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28786, sync = True, waitForSettling = True)
17-03-17 20:46:13.318 -07 000000610 INF: Z Motor: Moving to -0.131774 mm, started at -0.138575 mm, distance = 6.80 um
17-03-17 20:46:13.318 -07 000000610 INF: FPGA: Xmit ZDACW 28786\n [Z Motor]
17-03-17 20:46:13.318 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:46:13.328 -07 000000610 INF: FPGA: 'ZDACW 28786' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:46:13.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:13.328 -07 000000433 INF: FPGA: Recv ZDACR 28786
17-03-17 20:46:13.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:13.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:46:13.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:13.488 -07 000000438 INF: FPGA: Recv ZSGSRD 29807
17-03-17 20:46:13.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:13.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:13.498 -07 000000433 INF: FPGA: Recv ZSGSRD 29797
17-03-17 20:46:13.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:13.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:13.508 -07 000000438 INF: FPGA: Recv ZSGSRD 29805
17-03-17 20:46:13.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:13.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:13.518 -07 000000433 INF: FPGA: Recv ZSGSRD 29800
17-03-17 20:46:13.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:13.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:13.528 -07 000000012 INF: FPGA: Recv ZSGSRD 29796
17-03-17 20:46:13.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:13.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:13.538 -07 000000502 INF: FPGA: Recv ZSGSRD 29805
17-03-17 20:46:13.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:13.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:13.548 -07 000000438 INF: FPGA: Recv ZSGSRD 29803
17-03-17 20:46:13.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:13.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:13.558 -07 000000433 INF: FPGA: Recv ZSGSRD 29803
17-03-17 20:46:13.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:13.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:13.568 -07 000000623 INF: FPGA: Recv ZSGSRD 29798
17-03-17 20:46:13.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:13.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:13.578 -07 000000433 INF: FPGA: Recv ZSGSRD 29805
17-03-17 20:46:13.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:13.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:13.588 -07 000000012 INF: FPGA: Recv ZPIEZORD 25505
17-03-17 20:46:13.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:13.598 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.4 V.
17-03-17 20:46:13.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29802 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29803 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29796 (-131.0 uncal um), Max = 29807 (-131.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:46:13.598 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29802, posNoise = 5, negNoise = 6
17-03-17 20:46:13.598 -07 000000610 INF: Z Motor: After move to -0.131774, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:13.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:46:13.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:13.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:13.598 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:13.598 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:13.598 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:46:13.598 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:46:13.598 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:46:13.598 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:13.598 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:46:13.598 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:46:13.598 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:46:13.598 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:46:13.608 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:46:13.608 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:46:13.608 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:46:13.608 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:46:13.608 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:46:13.618 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:46:13.618 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:46:13.618 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:46:13.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28963 150\n [Camera]
17-03-17 20:46:13.818 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:46:14.238 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:46:14.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:46:14.238 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:14.238 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:14.238 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:46:14.238 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:46:14.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:46:14.238 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:14.238 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:14.238 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:46:14.428 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28963 804
17-03-17 20:46:14.578 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:46:14.618 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:46:14.618 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:46:14.618 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:14.618 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:46:14.618 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:46:14.618 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:14.618 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:14.618 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:46:14.628 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:14.628 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:46:14.778 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:46:14.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:46:14.778 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:14.788 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:46:14.788 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:14.788 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:46:14.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:46:14.788 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:14.788 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:14.788 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:46:14.968 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-17 20:46:14.968 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:46:14.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28963 150' command took 2 ms to send, 1349 ms to get response, and 1357 ms overall
17-03-17 20:46:14.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:46:14.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131777722259895. ------
17-03-17 20:46:14.978 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:14.978 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13835 mm
17-03-17 20:46:14.978 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:46:14.978 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:46:14.978 -07 000000431 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 20:46:14.978 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:14.978 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 30223, sync = True, waitForSettling = False)
17-03-17 20:46:14.978 -07 000000433 INF: Z Motor: Moving to -0.138352 mm, started at -0.131778 mm, distance = -6.57 um
17-03-17 20:46:14.988 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:46:14.988 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:14.988 -07 000000012 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:46:14.998 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:46:14.998 -07 000000431 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:14.998 -07 000000433 INF: FPGA: Xmit ZDACW 30223\n [Z Motor]
17-03-17 20:46:14.998 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:46:14.998 -07 000000431 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:46:14.998 -07 000000431 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:46:15.008 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:46:15.008 -07 000000433 INF: FPGA: 'ZDACW 30223' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:46:15.018 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:46:15.028 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:15.028 -07 000000627 INF: FPGA: Recv ZDACR 30223
17-03-17 20:46:15.038 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:46:15.038 -07 000000433 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 20:46:15.168 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:46:15.168 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:46:15.168 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:15.168 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:46:15.168 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:46:15.168 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:15.178 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:15.178 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:15.178 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:46:15.178 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:46:15.208 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:46:15.208 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:46:15.388 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 20:46:15.388 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:46:15.428 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:15.428 -07 000000482 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:46:15.438 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:46:15.438 -07 000000431 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:15.438 -07 000000431 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:46:15.438 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-17 20:46:16.388 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:16.388 -07 000000486 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:46:16.398 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:16.398 -07 000000431 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:16.428 -07 000000431 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:46:16.428 -07 000000431 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:46:16.428 -07 000000431 INF: Y Motor: Moved to 65.7144 after 1444 ms (table move)
17-03-17 20:46:16.428 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138352 mm (DAC = 30223)
17-03-17 20:46:16.428 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:16.428 -07 000000429 INF: FPGA: Recv ZSGSRD 30823
17-03-17 20:46:16.438 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:46:16.438 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:16.438 -07 000000448 INF: FPGA: Recv ZSGSRD 30823
17-03-17 20:46:16.448 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:16.448 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:16.448 -07 000000618 INF: FPGA: Recv ZSGSRD 30828
17-03-17 20:46:16.458 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:16.458 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:16.458 -07 000000547 INF: FPGA: Recv ZSGSRD 30828
17-03-17 20:46:16.468 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:16.468 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:16.468 -07 000000448 INF: FPGA: Recv ZSGSRD 30824
17-03-17 20:46:16.478 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:16.478 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:16.478 -07 000000475 INF: FPGA: Recv ZSGSRD 30826
17-03-17 20:46:16.488 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:16.488 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:16.488 -07 000000448 INF: FPGA: Recv ZSGSRD 30822
17-03-17 20:46:16.498 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:16.498 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:16.498 -07 000000475 INF: FPGA: Recv ZSGSRD 30824
17-03-17 20:46:16.508 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:16.508 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:16.508 -07 000000475 INF: FPGA: Recv ZSGSRD 30820
17-03-17 20:46:16.518 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:46:16.518 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:16.518 -07 000000448 INF: FPGA: Recv ZSGSRD 30824
17-03-17 20:46:16.528 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:16.528 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:16.528 -07 000000475 INF: FPGA: Recv ZPIEZORD 26884
17-03-17 20:46:16.538 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:16.538 -07 000000623 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.612 V. Piezo Error = -8.7 V.
17-03-17 20:46:16.538 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30824 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30824 (-137.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30820 (-137.5 uncal um), Max = 30828 (-137.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:46:16.538 -07 000000623 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30824, posNoise = 4, negNoise = 4
17-03-17 20:46:16.538 -07 000000623 INF: Z Motor: After move to -0.138352, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:16.538 -07 000000623 INF: Z Motor: Settle wait time = 1447 ms, measure time = 104 ms (allowed 150 ms), total time = 1551 ms
17-03-17 20:46:16.538 -07 000000623 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:46:16.588 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 20:46:16.588 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:46:16.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:16.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:16.588 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:16.588 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:16.588 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:46:16.588 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:16.588 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:46:16.588 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:46:16.598 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:46:16.598 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:46:16.598 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:46:16.598 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:46:16.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:46:16.648 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:46:16.808 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:46:16.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:46:16.848 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:46:16.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:46:16.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:46:16.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start.
17-03-17 20:46:16.888 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:46:16.888 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 20:46:16.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:46:16.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:46:16.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:16.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:46:16.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:46:16.988 -07 000000623 INF: Autofocus start
17-03-17 20:46:16.988 -07 000000623 INF: MeasureProfile start
17-03-17 20:46:16.988 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:16.988 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:16.998 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:46:16.998 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:46:16.998 -07 000000623 INF: MeasureProfile done
17-03-17 20:46:16.998 -07 000000623 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:46:16.998 -07 000000623 INF: Autofocus finished
17-03-17 20:46:17.198 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:46:17.198 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:46:17.198 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138343267068775. ----------
17-03-17 20:46:17.208 -07 000000610 INF: Cycle	42	Tile	8	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:46:17.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28747, sync = True, waitForSettling = True)
17-03-17 20:46:17.208 -07 000000610 INF: Z Motor: Moving to -0.131595 mm, started at -0.138343 mm, distance = 6.75 um
17-03-17 20:46:17.208 -07 000000610 INF: FPGA: Xmit ZDACW 28747\n [Z Motor]
17-03-17 20:46:17.208 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:46:17.218 -07 000000610 INF: FPGA: 'ZDACW 28747' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:46:17.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:17.218 -07 000000480 INF: FPGA: Recv ZDACR 28747
17-03-17 20:46:17.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:17.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:46:17.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:17.378 -07 000000480 INF: FPGA: Recv ZSGSRD 29775
17-03-17 20:46:17.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:17.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:17.388 -07 000000480 INF: FPGA: Recv ZSGSRD 29775
17-03-17 20:46:17.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:17.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:17.398 -07 000000480 INF: FPGA: Recv ZSGSRD 29774
17-03-17 20:46:17.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:17.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:17.408 -07 000000480 INF: FPGA: Recv ZSGSRD 29774
17-03-17 20:46:17.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:17.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:17.418 -07 000000502 INF: FPGA: Recv ZSGSRD 29774
17-03-17 20:46:17.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:17.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:17.428 -07 000000502 INF: FPGA: Recv ZSGSRD 29777
17-03-17 20:46:17.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:17.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:17.438 -07 000000502 INF: FPGA: Recv ZSGSRD 29781
17-03-17 20:46:17.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:17.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:17.448 -07 000000502 INF: FPGA: Recv ZSGSRD 29775
17-03-17 20:46:17.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:17.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:17.458 -07 000000627 INF: FPGA: Recv ZSGSRD 29774
17-03-17 20:46:17.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:17.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:17.468 -07 000000502 INF: FPGA: Recv ZSGSRD 29769
17-03-17 20:46:17.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:17.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:17.478 -07 000000502 INF: FPGA: Recv ZPIEZORD 25480
17-03-17 20:46:17.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:17.488 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -9.4 V.
17-03-17 20:46:17.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29775 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29774 (-130.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29769 (-130.8 uncal um), Max = 29781 (-130.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:46:17.488 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29775, posNoise = 6, negNoise = 6
17-03-17 20:46:17.488 -07 000000610 INF: Z Motor: After move to -0.131595, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:17.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 20:46:17.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:17.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:17.488 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:17.488 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:17.488 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:46:17.488 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:17.488 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:46:17.488 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:46:17.488 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:46:17.488 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:46:17.488 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:46:17.488 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:46:17.498 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.008536,
17-03-17 20:46:17.498 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:46:17.498 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:46:17.498 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:46:17.498 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:46:17.518 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 20:46:17.518 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 20:46:17.518 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 20:46:17.518 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 20:46:17.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28924 150\n [Camera]
17-03-17 20:46:17.738 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:46:18.158 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:46:18.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:46:18.158 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:18.158 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:18.158 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:46:18.158 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:46:18.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:46:18.158 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:18.158 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:18.158 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:46:18.348 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28924 804
17-03-17 20:46:18.498 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:46:18.558 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:46:18.558 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:46:18.558 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:18.558 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:46:18.558 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:46:18.558 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:18.558 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:18.558 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:46:18.558 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:18.568 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:46:18.698 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:46:18.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:46:18.698 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:18.698 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:18.698 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 20:46:18.698 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:46:18.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:46:18.698 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:18.698 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:18.698 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 20:46:18.888 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-17 20:46:18.888 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:46:18.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28924 150' command took 2 ms to send, 1347 ms to get response, and 1374 ms overall
17-03-17 20:46:18.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:46:18.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131604268532067. ------
17-03-17 20:46:18.898 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:18.898 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13799 mm
17-03-17 20:46:18.898 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:46:18.898 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:46:18.898 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:18.898 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30145, sync = True, waitForSettling = False)
17-03-17 20:46:18.898 -07 000000448 INF: Z Motor: Moving to -0.137995 mm, started at -0.131604 mm, distance = -6.39 um
17-03-17 20:46:18.898 -07 000000475 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 20:46:19.018 -07 000000448 INF: FPGA: Xmit ZDACW 30145\n [Z Motor]
17-03-17 20:46:19.018 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 122 ms overall
17-03-17 20:46:19.028 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:46:19.028 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:46:19.028 -07 000000448 INF: FPGA: 'ZDACW 30145' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-17 20:46:19.038 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:19.038 -07 000000429 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:46:19.048 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:19.048 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 142 ms overall
17-03-17 20:46:19.048 -07 000000475 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:19.048 -07 000000475 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:46:19.048 -07 000000475 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:46:19.048 -07 000000618 INF: FPGA: Recv ZDACR 30145
17-03-17 20:46:19.058 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:46:19.058 -07 000000448 INF: Z Motor: MoveAbsStepped took 153 ms (did NOT wait for settling yet))
17-03-17 20:46:19.058 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:46:19.098 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:46:19.098 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:46:19.098 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:19.108 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:46:19.108 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:46:19.108 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:19.108 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:46:19.108 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:46:19.108 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:46:19.118 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:46:19.228 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:46:19.228 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 205 ms overall
17-03-17 20:46:19.428 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:46:19.428 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:46:19.468 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:19.468 -07 000000627 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:46:19.478 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:46:19.478 -07 000000475 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:19.478 -07 000000475 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:46:19.478 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.160 mm/sec
17-03-17 20:46:20.428 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:20.428 -07 000000429 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:46:20.438 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:20.438 -07 000000475 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:20.458 -07 000000475 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:46:20.458 -07 000000475 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:46:20.458 -07 000000475 INF: Y Motor: Moved to 66.5396 after 1557 ms (table move)
17-03-17 20:46:20.458 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137995 mm (DAC = 30145)
17-03-17 20:46:20.458 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:20.468 -07 000000475 INF: FPGA: Recv ZSGSRD 30773
17-03-17 20:46:20.468 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:46:20.468 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:20.468 -07 000000475 INF: FPGA: Recv ZSGSRD 30776
17-03-17 20:46:20.478 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:20.478 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:20.478 -07 000000475 INF: FPGA: Recv ZSGSRD 30771
17-03-17 20:46:20.488 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:20.488 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:20.488 -07 000000475 INF: FPGA: Recv ZSGSRD 30783
17-03-17 20:46:20.498 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:20.498 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:20.498 -07 000000475 INF: FPGA: Recv ZSGSRD 30775
17-03-17 20:46:20.508 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:20.508 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:20.508 -07 000000475 INF: FPGA: Recv ZSGSRD 30769
17-03-17 20:46:20.518 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:20.518 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:20.518 -07 000000475 INF: FPGA: Recv ZSGSRD 30768
17-03-17 20:46:20.528 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:20.528 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:20.528 -07 000000618 INF: FPGA: Recv ZSGSRD 30761
17-03-17 20:46:20.538 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:20.538 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:20.538 -07 000000475 INF: FPGA: Recv ZSGSRD 30773
17-03-17 20:46:20.548 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:20.548 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:20.548 -07 000000475 INF: FPGA: Recv ZSGSRD 30771
17-03-17 20:46:20.558 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:20.558 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:20.558 -07 000000618 INF: FPGA: Recv ZPIEZORD 26799
17-03-17 20:46:20.568 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:20.568 -07 000000502 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.600 V. Piezo Error = -8.7 V.
17-03-17 20:46:20.568 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30772 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30772 (-137.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 30761 (-137.1 uncal um), Max = 30783 (-137.3 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 20:46:20.568 -07 000000502 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30772, posNoise = 11, negNoise = 11
17-03-17 20:46:20.568 -07 000000502 INF: Z Motor: After move to -0.137995, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:20.568 -07 000000502 INF: Z Motor: Settle wait time = 1560 ms, measure time = 103 ms (allowed 150 ms), total time = 1663 ms
17-03-17 20:46:20.568 -07 000000502 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:46:20.618 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1716 ms
17-03-17 20:46:20.618 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:46:20.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:20.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:20.618 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:20.618 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:20.618 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:46:20.618 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:20.628 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:20.628 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:46:20.628 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:46:20.628 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:46:20.638 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:46:20.638 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 20:46:20.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:46:20.688 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:46:20.888 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:46:20.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:46:20.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:46:20.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:46:20.928 -07 000000462 INF: FPGA: Recv @CAMSNAP 282
17-03-17 20:46:20.928 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 20:46:20.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 282 ms to get response, and 286 ms overall
17-03-17 20:46:21.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:46:21.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:21.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:46:21.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:46:21.028 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:21.028 -07 000000502 INF: Autofocus start
17-03-17 20:46:21.028 -07 000000502 INF: MeasureProfile start
17-03-17 20:46:21.028 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:21.038 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:46:21.038 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:46:21.038 -07 000000502 INF: MeasureProfile done
17-03-17 20:46:21.038 -07 000000502 INF: X=-6  Z correction [um]=-0.03260989
17-03-17 20:46:21.038 -07 000000502 INF: Autofocus finished
17-03-17 20:46:21.238 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:46:21.238 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:46:21.238 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.138009208037403. ----------
17-03-17 20:46:21.238 -07 000000610 INF: Cycle	42	Tile	9	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:46:21.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28650, sync = True, waitForSettling = True)
17-03-17 20:46:21.248 -07 000000610 INF: Z Motor: Moving to -0.131151 mm, started at -0.138009 mm, distance = 6.86 um
17-03-17 20:46:21.248 -07 000000610 INF: FPGA: Xmit ZDACW 28650\n [Z Motor]
17-03-17 20:46:21.248 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:46:21.258 -07 000000610 INF: FPGA: 'ZDACW 28650' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:21.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:21.258 -07 000000618 INF: FPGA: Recv ZDACR 28650
17-03-17 20:46:21.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:21.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:46:21.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:21.418 -07 000000448 INF: FPGA: Recv ZSGSRD 29705
17-03-17 20:46:21.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:21.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:21.428 -07 000000618 INF: FPGA: Recv ZSGSRD 29714
17-03-17 20:46:21.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:21.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:21.438 -07 000000012 INF: FPGA: Recv ZSGSRD 29702
17-03-17 20:46:21.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:21.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:21.448 -07 000000448 INF: FPGA: Recv ZSGSRD 29699
17-03-17 20:46:21.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:21.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:21.458 -07 000000012 INF: FPGA: Recv ZSGSRD 29706
17-03-17 20:46:21.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:21.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:21.468 -07 000000448 INF: FPGA: Recv ZSGSRD 29711
17-03-17 20:46:21.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:21.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:21.478 -07 000000462 INF: FPGA: Recv ZSGSRD 29703
17-03-17 20:46:21.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:46:21.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:21.488 -07 000000547 INF: FPGA: Recv ZSGSRD 29707
17-03-17 20:46:21.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:21.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:21.498 -07 000000475 INF: FPGA: Recv ZSGSRD 29709
17-03-17 20:46:21.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:21.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:21.508 -07 000000502 INF: FPGA: Recv ZSGSRD 29710
17-03-17 20:46:21.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:21.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:21.518 -07 000000462 INF: FPGA: Recv ZPIEZORD 25391
17-03-17 20:46:21.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:21.528 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.372 V. Piezo Error = -9.5 V.
17-03-17 20:46:21.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29707 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29706 (-130.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29699 (-130.3 uncal um), Max = 29714 (-130.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:46:21.528 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29707, posNoise = 7, negNoise = 8
17-03-17 20:46:21.528 -07 000000610 INF: Z Motor: After move to -0.131151, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:21.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:46:21.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:21.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:21.528 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:21.528 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:21.528 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:46:21.528 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:46:21.528 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:21.528 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:46:21.528 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:21.528 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:46:21.528 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:46:21.528 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:46:21.528 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:46:21.528 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:46:21.528 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:46:21.538 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:46:21.538 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:46:21.538 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:46:21.538 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:46:21.538 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:46:21.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28827 150\n [Camera]
17-03-17 20:46:21.748 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:46:21.818 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:46:21.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:46:22.168 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:46:22.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:46:22.168 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:22.168 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:46:22.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:46:22.168 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:22.168 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:22.168 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:46:22.178 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:22.178 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:46:22.358 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28827 804
17-03-17 20:46:22.508 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:46:22.548 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:46:22.548 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 20:46:22.548 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:22.548 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:46:22.548 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:46:22.548 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:22.548 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:22.558 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:22.558 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:46:22.558 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:46:22.708 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:46:22.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:46:22.708 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:22.708 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:46:22.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:46:22.708 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:22.718 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:22.718 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 20:46:22.718 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:22.718 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) start.
17-03-17 20:46:22.858 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.985358,
17-03-17 20:46:22.898 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:46:22.898 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:46:22.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28827 150' command took 2 ms to send, 1347 ms to get response, and 1354 ms overall
17-03-17 20:46:22.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:46:22.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.131167422106428. ------
17-03-17 20:46:22.908 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13791 mm
17-03-17 20:46:22.908 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:46:22.908 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:22.908 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:46:22.908 -07 000000547 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 20:46:22.908 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 30127, sync = True, waitForSettling = False)
17-03-17 20:46:22.908 -07 000000462 INF: Z Motor: Moving to -0.137913 mm, started at -0.131167 mm, distance = -6.75 um
17-03-17 20:46:22.908 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:22.918 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:46:22.918 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:22.918 -07 000000475 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:46:22.928 -07 000000462 INF: FPGA: Xmit ZDACW 30127\n [Z Motor]
17-03-17 20:46:22.928 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:46:22.928 -07 000000547 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:22.928 -07 000000547 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:46:22.928 -07 000000547 INF: Y Motor: Moving 1349 steps-27
17-03-17 20:46:23.038 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:46:23.048 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:46:23.048 -07 000000462 INF: FPGA: 'ZDACW 30127' command took 0 ms to send, 0 ms to get response, and 135 ms overall
17-03-17 20:46:23.058 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:46:23.068 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:23.068 -07 000000618 INF: FPGA: Recv ZDACR 30127
17-03-17 20:46:23.078 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:46:23.078 -07 000000462 INF: Z Motor: MoveAbsStepped took 165 ms (did NOT wait for settling yet))
17-03-17 20:46:23.108 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:46:23.108 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:46:23.108 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:23.108 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 20:46:23.108 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:46:23.108 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:23.118 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:23.118 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:46:23.118 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:23.128 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:46:23.248 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:46:23.248 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 332 ms overall
17-03-17 20:46:23.428 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:46:23.428 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 388 ms overall
17-03-17 20:46:23.488 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:23.488 -07 000000623 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:46:23.498 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:46:23.498 -07 000000547 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:23.498 -07 000000547 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 20:46:23.498 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 507 ms, distance = 0.843 mm, average velocity = 1.663 mm/sec
17-03-17 20:46:24.448 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:24.448 -07 000000623 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:46:24.458 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:24.458 -07 000000547 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:24.478 -07 000000547 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:46:24.478 -07 000000547 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:46:24.478 -07 000000547 INF: Y Motor: Moved to 67.3726 after 1568 ms (table move)
17-03-17 20:46:24.478 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137913 mm (DAC = 30127)
17-03-17 20:46:24.478 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:24.478 -07 000000502 INF: FPGA: Recv ZSGSRD 30758
17-03-17 20:46:24.488 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:46:24.488 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:24.488 -07 000000547 INF: FPGA: Recv ZSGSRD 30764
17-03-17 20:46:24.498 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:24.498 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:24.498 -07 000000475 INF: FPGA: Recv ZSGSRD 30755
17-03-17 20:46:24.508 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:24.508 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:24.508 -07 000000462 INF: FPGA: Recv ZSGSRD 30755
17-03-17 20:46:24.518 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:24.518 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:24.518 -07 000000475 INF: FPGA: Recv ZSGSRD 30757
17-03-17 20:46:24.528 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:24.528 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:24.528 -07 000000547 INF: FPGA: Recv ZSGSRD 30757
17-03-17 20:46:24.538 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:24.538 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:24.538 -07 000000475 INF: FPGA: Recv ZSGSRD 30755
17-03-17 20:46:24.548 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:24.548 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:24.548 -07 000000448 INF: FPGA: Recv ZSGSRD 30752
17-03-17 20:46:24.558 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:24.558 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:24.558 -07 000000502 INF: FPGA: Recv ZSGSRD 30760
17-03-17 20:46:24.568 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:24.568 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:24.568 -07 000000012 INF: FPGA: Recv ZSGSRD 30762
17-03-17 20:46:24.578 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:24.578 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:24.578 -07 000000502 INF: FPGA: Recv ZPIEZORD 26799
17-03-17 20:46:24.588 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:24.588 -07 000000429 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.597 V. Piezo Error = -8.7 V.
17-03-17 20:46:24.588 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30758 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30757 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30752 (-137.1 uncal um), Max = 30764 (-137.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:46:24.588 -07 000000429 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30758, posNoise = 6, negNoise = 6
17-03-17 20:46:24.588 -07 000000429 INF: Z Motor: After move to -0.137913, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:24.588 -07 000000429 INF: Z Motor: Settle wait time = 1571 ms, measure time = 104 ms (allowed 150 ms), total time = 1675 ms
17-03-17 20:46:24.588 -07 000000429 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:46:24.638 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1727 ms
17-03-17 20:46:24.638 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:46:24.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:24.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:24.638 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:24.638 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:46:24.638 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:24.638 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:24.638 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:46:24.638 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:46:24.648 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:46:24.648 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:46:24.658 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:46:24.658 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:46:24.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:46:24.698 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:46:24.898 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:46:24.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:46:24.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:46:24.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:46:24.938 -07 000000448 INF: FPGA: Recv @CAMSNAP 283
17-03-17 20:46:24.948 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 20:46:24.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 288 ms overall
17-03-17 20:46:25.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 20:46:25.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:25.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:46:25.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 20:46:25.048 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:25.048 -07 000000475 INF: Autofocus start
17-03-17 20:46:25.048 -07 000000475 INF: MeasureProfile start
17-03-17 20:46:25.048 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:25.058 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:46:25.058 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:46:25.068 -07 000000475 INF: MeasureProfile done
17-03-17 20:46:25.068 -07 000000475 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:46:25.068 -07 000000475 INF: Autofocus finished
17-03-17 20:46:25.258 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:46:25.258 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:46:25.258 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.137919269067419. ----------
17-03-17 20:46:25.258 -07 000000610 INF: Cycle	42	Tile	10	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:46:25.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28634, sync = True, waitForSettling = True)
17-03-17 20:46:25.268 -07 000000610 INF: Z Motor: Moving to -0.131078 mm, started at -0.137919 mm, distance = 6.84 um
17-03-17 20:46:25.268 -07 000000610 INF: FPGA: Xmit ZDACW 28634\n [Z Motor]
17-03-17 20:46:25.268 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:46:25.278 -07 000000610 INF: FPGA: 'ZDACW 28634' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:25.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:25.278 -07 000000012 INF: FPGA: Recv ZDACR 28634
17-03-17 20:46:25.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:25.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:46:25.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:25.438 -07 000000012 INF: FPGA: Recv ZSGSRD 29697
17-03-17 20:46:25.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:25.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:25.448 -07 000000462 INF: FPGA: Recv ZSGSRD 29698
17-03-17 20:46:25.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:25.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:25.458 -07 000000012 INF: FPGA: Recv ZSGSRD 29691
17-03-17 20:46:25.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:25.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:25.468 -07 000000547 INF: FPGA: Recv ZSGSRD 29692
17-03-17 20:46:25.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:25.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:25.478 -07 000000012 INF: FPGA: Recv ZSGSRD 29699
17-03-17 20:46:25.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:25.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:25.488 -07 000000547 INF: FPGA: Recv ZSGSRD 29698
17-03-17 20:46:25.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:25.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:25.498 -07 000000618 INF: FPGA: Recv ZSGSRD 29693
17-03-17 20:46:25.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:25.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:25.508 -07 000000547 INF: FPGA: Recv ZSGSRD 29695
17-03-17 20:46:25.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:25.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:25.518 -07 000000618 INF: FPGA: Recv ZSGSRD 29694
17-03-17 20:46:25.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:25.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:25.528 -07 000000547 INF: FPGA: Recv ZSGSRD 29696
17-03-17 20:46:25.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:25.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:25.538 -07 000000547 INF: FPGA: Recv ZPIEZORD 25419
17-03-17 20:46:25.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:25.548 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.369 V. Piezo Error = -9.4 V.
17-03-17 20:46:25.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29695 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29696 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29691 (-130.3 uncal um), Max = 29699 (-130.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:46:25.548 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29695, posNoise = 4, negNoise = 4
17-03-17 20:46:25.548 -07 000000610 INF: Z Motor: After move to -0.131078, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:25.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:46:25.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:25.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:25.548 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:25.548 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:25.548 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:46:25.548 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:46:25.548 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:46:25.548 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:25.548 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:46:25.548 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:46:25.548 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:25.548 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:46:25.548 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:46:25.548 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:46:25.548 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:46:25.558 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:46:25.558 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:46:25.558 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:46:25.568 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:46:25.568 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:46:25.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28811 150\n [Camera]
17-03-17 20:46:25.768 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:46:26.188 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:46:26.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:46:26.188 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:26.188 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:46:26.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:46:26.188 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:26.188 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:26.198 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:46:26.198 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:26.198 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:46:26.378 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28811 804
17-03-17 20:46:26.528 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:46:26.588 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:46:26.588 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:46:26.588 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:26.588 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:46:26.588 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:46:26.588 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:26.588 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:46:26.588 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:46:26.598 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:46:26.598 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:46:26.728 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:46:26.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:46:26.728 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:26.728 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:26.728 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:46:26.738 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:46:26.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:46:26.738 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:26.738 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:26.738 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 20:46:26.818 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:46:26.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:46:26.918 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-17 20:46:26.928 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:46:26.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28811 150' command took 2 ms to send, 1352 ms to get response, and 1357 ms overall
17-03-17 20:46:26.928 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:46:26.928 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.131090331560727. ------
17-03-17 20:46:26.928 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:26.928 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13753 mm
17-03-17 20:46:26.928 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:46:26.938 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:46:26.938 -07 000000429 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 20:46:26.938 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:26.938 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30043, sync = True, waitForSettling = False)
17-03-17 20:46:26.938 -07 000000623 INF: Z Motor: Moving to -0.137528 mm, started at -0.131090 mm, distance = -6.44 um
17-03-17 20:46:26.938 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:26.938 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:46:26.938 -07 000000627 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:46:26.948 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:26.948 -07 000000429 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:26.948 -07 000000429 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:46:26.948 -07 000000429 INF: Y Motor: Moving 1344 steps-22
17-03-17 20:46:26.948 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:46:26.958 -07 000000623 INF: FPGA: Xmit ZDACW 30043\n [Z Motor]
17-03-17 20:46:26.958 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:46:26.968 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:46:26.968 -07 000000623 INF: FPGA: 'ZDACW 30043' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:46:26.978 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:26.978 -07 000000618 INF: FPGA: Recv ZDACR 30043
17-03-17 20:46:26.988 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:46:26.988 -07 000000623 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 20:46:27.118 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:46:27.118 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:46:27.118 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:27.128 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:46:27.128 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:46:27.128 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:27.128 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:46:27.128 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:46:27.128 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:46:27.128 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:46:27.148 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:46:27.148 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 20:46:27.348 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:46:27.348 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 20:46:27.378 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:27.378 -07 000000462 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:46:27.388 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:46:27.388 -07 000000429 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:27.388 -07 000000429 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:46:27.388 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.840 mm, average velocity = 2.100 mm/sec
17-03-17 20:46:28.218 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.996267,
17-03-17 20:46:28.338 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:28.338 -07 000000627 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:46:28.348 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:28.348 -07 000000429 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:28.368 -07 000000429 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:46:28.368 -07 000000429 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:46:28.368 -07 000000429 INF: Y Motor: Moved to 68.2051 after 1429 ms (table move)
17-03-17 20:46:28.368 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137528 mm (DAC = 30043)
17-03-17 20:46:28.368 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:28.368 -07 000000623 INF: FPGA: Recv ZSGSRD 30709
17-03-17 20:46:28.378 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:46:28.378 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:28.378 -07 000000429 INF: FPGA: Recv ZSGSRD 30699
17-03-17 20:46:28.388 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:28.388 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:28.388 -07 000000475 INF: FPGA: Recv ZSGSRD 30698
17-03-17 20:46:28.398 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:28.398 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:28.398 -07 000000569 INF: FPGA: Recv ZSGSRD 30705
17-03-17 20:46:28.408 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:28.408 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:28.408 -07 000000623 INF: FPGA: Recv ZSGSRD 30704
17-03-17 20:46:28.418 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:28.418 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:28.418 -07 000000618 INF: FPGA: Recv ZSGSRD 30699
17-03-17 20:46:28.428 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:28.428 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:28.428 -07 000000502 INF: FPGA: Recv ZSGSRD 30697
17-03-17 20:46:28.438 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:28.438 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:28.438 -07 000000569 INF: FPGA: Recv ZSGSRD 30692
17-03-17 20:46:28.448 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:28.448 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:28.448 -07 000000475 INF: FPGA: Recv ZSGSRD 30699
17-03-17 20:46:28.458 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:28.458 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:28.458 -07 000000012 INF: FPGA: Recv ZSGSRD 30698
17-03-17 20:46:28.468 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:28.468 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:28.468 -07 000000623 INF: FPGA: Recv ZPIEZORD 26705
17-03-17 20:46:28.478 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:28.478 -07 000000547 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.584 V. Piezo Error = -8.8 V.
17-03-17 20:46:28.478 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30700 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30699 (-136.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30692 (-136.7 uncal um), Max = 30709 (-136.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:46:28.478 -07 000000547 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30700, posNoise = 9, negNoise = 8
17-03-17 20:46:28.478 -07 000000547 INF: Z Motor: After move to -0.137528, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:28.478 -07 000000547 INF: Z Motor: Settle wait time = 1432 ms, measure time = 107 ms (allowed 150 ms), total time = 1539 ms
17-03-17 20:46:28.478 -07 000000547 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 20:46:28.528 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 20:46:28.528 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:46:28.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:28.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:28.528 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:28.528 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:28.528 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:46:28.528 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:28.528 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:46:28.528 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:46:28.538 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:46:28.538 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:46:28.548 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 20:46:28.548 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:46:28.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:46:28.588 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:46:28.788 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:46:28.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:46:28.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:46:28.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) start.
17-03-17 20:46:28.828 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:46:28.828 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 20:46:28.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 20:46:28.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:46:28.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:28.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:46:28.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:46:29.028 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:29.028 -07 000000429 INF: Autofocus start
17-03-17 20:46:29.028 -07 000000429 INF: MeasureProfile start
17-03-17 20:46:29.028 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:29.038 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:46:29.038 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:46:29.048 -07 000000429 INF: MeasureProfile done
17-03-17 20:46:29.048 -07 000000429 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:46:29.048 -07 000000429 INF: Autofocus finished
17-03-17 20:46:29.238 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:46:29.238 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:46:29.238 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.137546664763196. ----------
17-03-17 20:46:29.248 -07 000000610 INF: Cycle	42	Tile	11	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:46:29.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28567, sync = True, waitForSettling = True)
17-03-17 20:46:29.248 -07 000000610 INF: Z Motor: Moving to -0.130771 mm, started at -0.137547 mm, distance = 6.78 um
17-03-17 20:46:29.248 -07 000000610 INF: FPGA: Xmit ZDACW 28567\n [Z Motor]
17-03-17 20:46:29.248 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:46:29.258 -07 000000610 INF: FPGA: 'ZDACW 28567' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:46:29.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:29.258 -07 000000627 INF: FPGA: Recv ZDACR 28567
17-03-17 20:46:29.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:29.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:46:29.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:29.418 -07 000000475 INF: FPGA: Recv ZSGSRD 29650
17-03-17 20:46:29.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:29.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:29.428 -07 000000475 INF: FPGA: Recv ZSGSRD 29654
17-03-17 20:46:29.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:29.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:29.438 -07 000000475 INF: FPGA: Recv ZSGSRD 29648
17-03-17 20:46:29.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:29.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:29.448 -07 000000547 INF: FPGA: Recv ZSGSRD 29641
17-03-17 20:46:29.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:29.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:29.458 -07 000000569 INF: FPGA: Recv ZSGSRD 29649
17-03-17 20:46:29.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:29.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:29.468 -07 000000429 INF: FPGA: Recv ZSGSRD 29649
17-03-17 20:46:29.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:29.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:29.478 -07 000000502 INF: FPGA: Recv ZSGSRD 29648
17-03-17 20:46:29.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:29.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:29.488 -07 000000618 INF: FPGA: Recv ZSGSRD 29646
17-03-17 20:46:29.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:29.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:29.498 -07 000000429 INF: FPGA: Recv ZSGSRD 29642
17-03-17 20:46:29.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:29.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:29.508 -07 000000623 INF: FPGA: Recv ZSGSRD 29654
17-03-17 20:46:29.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:29.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:29.518 -07 000000618 INF: FPGA: Recv ZPIEZORD 25355
17-03-17 20:46:29.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:29.528 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.359 V. Piezo Error = -9.4 V.
17-03-17 20:46:29.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29648 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29648 (-130.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29641 (-130.0 uncal um), Max = 29654 (-130.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:46:29.528 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29648, posNoise = 6, negNoise = 7
17-03-17 20:46:29.528 -07 000000610 INF: Z Motor: After move to -0.130771, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:29.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 20:46:29.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:29.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:29.528 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:29.528 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:29.528 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:46:29.528 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:46:29.528 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:46:29.528 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:29.528 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:46:29.528 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:46:29.528 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:29.528 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:46:29.538 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:46:29.538 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:46:29.538 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:46:29.538 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:46:29.548 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 20:46:29.548 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:46:29.548 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 20:46:29.548 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:46:29.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28744 150\n [Camera]
17-03-17 20:46:29.748 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:46:30.168 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:46:30.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:46:30.168 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:30.168 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:30.168 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-17 20:46:30.168 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:46:30.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:46:30.168 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:30.168 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:30.168 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:46:30.358 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28744 804
17-03-17 20:46:30.508 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:46:30.548 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:46:30.548 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:46:30.548 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:30.548 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:46:30.548 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:46:30.558 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:30.558 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:46:30.558 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:46:30.558 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:46:30.568 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:46:30.708 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:46:30.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:46:30.718 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:30.718 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:30.718 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:46:30.718 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:46:30.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:46:30.718 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:30.718 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:30.718 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 20:46:30.908 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:46:30.908 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:46:30.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28744 150' command took 2 ms to send, 1351 ms to get response, and 1354 ms overall
17-03-17 20:46:30.908 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:46:30.908 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.130788393590064. ------
17-03-17 20:46:30.908 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13741 mm
17-03-17 20:46:30.908 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:46:30.908 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:31.028 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:31.028 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 118 ms to get response, and 121 ms overall
17-03-17 20:46:31.028 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:46:31.028 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30017, sync = True, waitForSettling = False)
17-03-17 20:46:31.028 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:46:31.028 -07 000000623 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 20:46:31.038 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:31.038 -07 000000569 INF: Z Motor: Moving to -0.137409 mm, started at -0.130788 mm, distance = -6.62 um
17-03-17 20:46:31.038 -07 000000438 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:46:31.048 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:31.048 -07 000000623 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:31.048 -07 000000569 INF: FPGA: Xmit ZDACW 30017\n [Z Motor]
17-03-17 20:46:31.048 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:46:31.048 -07 000000623 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:46:31.048 -07 000000623 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:46:31.058 -07 000000569 INF: FPGA: 'ZDACW 30017' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:46:31.058 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:31.058 -07 000000547 INF: FPGA: Recv ZDACR 30017
17-03-17 20:46:31.068 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:46:31.068 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:31.068 -07 000000569 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 20:46:31.108 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 20:46:31.108 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:46:31.108 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:31.108 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:46:31.108 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:46:31.108 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:31.108 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:46:31.118 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:46:31.118 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:46:31.118 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:46:31.238 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:46:31.238 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 202 ms to get response, and 202 ms overall
17-03-17 20:46:31.448 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 20:46:31.448 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 373 ms to get response, and 400 ms overall
17-03-17 20:46:31.478 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:31.488 -07 000000438 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:46:31.488 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:46:31.488 -07 000000623 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:31.488 -07 000000623 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:46:31.488 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.094 mm/sec
17-03-17 20:46:31.818 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:46:31.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:46:32.438 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:32.438 -07 000000502 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:46:32.448 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:32.448 -07 000000623 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:32.468 -07 000000623 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:46:32.468 -07 000000623 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:46:32.468 -07 000000623 INF: Y Motor: Moved to 69.0273 after 1433 ms (table move)
17-03-17 20:46:32.468 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137409 mm (DAC = 30017)
17-03-17 20:46:32.468 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:32.468 -07 000000482 INF: FPGA: Recv ZSGSRD 30679
17-03-17 20:46:32.478 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:46:32.478 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:32.478 -07 000000438 INF: FPGA: Recv ZSGSRD 30682
17-03-17 20:46:32.488 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:32.488 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:32.488 -07 000000486 INF: FPGA: Recv ZSGSRD 30680
17-03-17 20:46:32.498 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:32.498 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:32.498 -07 000000547 INF: FPGA: Recv ZSGSRD 30682
17-03-17 20:46:32.508 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:32.508 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:32.508 -07 000000438 INF: FPGA: Recv ZSGSRD 30678
17-03-17 20:46:32.518 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:32.518 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:32.518 -07 000000623 INF: FPGA: Recv ZSGSRD 30675
17-03-17 20:46:32.528 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:32.528 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:32.528 -07 000000438 INF: FPGA: Recv ZSGSRD 30684
17-03-17 20:46:32.538 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:32.538 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:32.538 -07 000000433 INF: FPGA: Recv ZSGSRD 30687
17-03-17 20:46:32.548 -07 000000012 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:32.548 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:32.548 -07 000000486 INF: FPGA: Recv ZSGSRD 30676
17-03-17 20:46:32.558 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:32.558 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:32.558 -07 000000547 INF: FPGA: Recv ZSGSRD 30680
17-03-17 20:46:32.568 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:32.568 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:32.568 -07 000000569 INF: FPGA: Recv ZPIEZORD 26718
17-03-17 20:46:32.578 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:32.578 -07 000000012 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.580 V. Piezo Error = -8.7 V.
17-03-17 20:46:32.578 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30680 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30680 (-136.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30675 (-136.6 uncal um), Max = 30687 (-136.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:46:32.578 -07 000000012 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30680, posNoise = 7, negNoise = 5
17-03-17 20:46:32.578 -07 000000012 INF: Z Motor: After move to -0.137409, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:32.578 -07 000000012 INF: Z Motor: Settle wait time = 1436 ms, measure time = 103 ms (allowed 150 ms), total time = 1539 ms
17-03-17 20:46:32.578 -07 000000012 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:46:32.628 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1712 ms
17-03-17 20:46:32.628 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:46:32.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:32.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:32.628 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:32.628 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:32.628 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:46:32.628 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:32.628 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:32.628 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:46:32.638 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:46:32.638 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:46:32.638 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:46:32.648 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:46:32.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:46:32.688 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:46:32.888 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:46:32.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:46:32.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:46:32.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:46:32.928 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:46:32.928 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 20:46:32.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:46:33.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:46:33.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:33.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:46:33.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:46:33.028 -07 000000438 INF: Autofocus start
17-03-17 20:46:33.028 -07 000000438 INF: MeasureProfile start
17-03-17 20:46:33.028 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:33.028 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:33.038 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:46:33.038 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:46:33.038 -07 000000438 INF: MeasureProfile done
17-03-17 20:46:33.038 -07 000000438 INF: X=-80  Z correction [um]=-0.3928285
17-03-17 20:46:33.038 -07 000000438 INF: Autofocus finished
17-03-17 20:46:33.238 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:46:33.238 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:46:33.238 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.137418180520361. ----------
17-03-17 20:46:33.248 -07 000000610 INF: Cycle	42	Tile	12	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:46:33.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28444, sync = True, waitForSettling = True)
17-03-17 20:46:33.248 -07 000000610 INF: Z Motor: Moving to -0.130208 mm, started at -0.137418 mm, distance = 7.21 um
17-03-17 20:46:33.248 -07 000000610 INF: FPGA: Xmit ZDACW 28444\n [Z Motor]
17-03-17 20:46:33.248 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:46:33.258 -07 000000610 INF: FPGA: 'ZDACW 28444' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:46:33.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:33.268 -07 000000429 INF: FPGA: Recv ZDACR 28444
17-03-17 20:46:33.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:46:33.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:46:33.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:33.428 -07 000000012 INF: FPGA: Recv ZSGSRD 29556
17-03-17 20:46:33.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:33.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:33.438 -07 000000623 INF: FPGA: Recv ZSGSRD 29561
17-03-17 20:46:33.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:33.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:33.448 -07 000000626 INF: FPGA: Recv ZSGSRD 29553
17-03-17 20:46:33.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:33.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:33.458 -07 000000438 INF: FPGA: Recv ZSGSRD 29558
17-03-17 20:46:33.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:33.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:33.468 -07 000000627 INF: FPGA: Recv ZSGSRD 29559
17-03-17 20:46:33.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:33.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:33.478 -07 000000438 INF: FPGA: Recv ZSGSRD 29553
17-03-17 20:46:33.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:33.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:33.488 -07 000000627 INF: FPGA: Recv ZSGSRD 29563
17-03-17 20:46:33.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:33.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:33.498 -07 000000438 INF: FPGA: Recv ZSGSRD 29558
17-03-17 20:46:33.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:33.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:33.508 -07 000000012 INF: FPGA: Recv ZSGSRD 29554
17-03-17 20:46:33.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:33.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:33.518 -07 000000429 INF: FPGA: Recv ZSGSRD 29561
17-03-17 20:46:33.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:33.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:33.528 -07 000000486 INF: FPGA: Recv ZPIEZORD 25227
17-03-17 20:46:33.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:33.538 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.340 V. Piezo Error = -9.5 V.
17-03-17 20:46:33.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29558 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29558 (-129.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29553 (-129.4 uncal um), Max = 29563 (-129.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:46:33.538 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29558, posNoise = 5, negNoise = 5
17-03-17 20:46:33.538 -07 000000610 INF: Z Motor: After move to -0.130208, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:33.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-17 20:46:33.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:33.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:33.538 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:33.538 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:33.538 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:46:33.538 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:33.538 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:46:33.538 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:46:33.538 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:33.538 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:46:33.538 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:46:33.538 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:46:33.548 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:46:33.548 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:46:33.548 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:46:33.548 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:46:33.558 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:46:33.558 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:46:33.558 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:46:33.558 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:46:33.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28621 150\n [Camera]
17-03-17 20:46:33.588 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.005817,
17-03-17 20:46:33.758 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:46:34.178 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:46:34.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:46:34.178 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:34.188 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:46:34.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:46:34.188 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:34.188 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:34.188 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:46:34.188 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:34.188 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:46:34.378 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28621 804
17-03-17 20:46:34.518 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:46:34.558 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:46:34.558 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 20:46:34.558 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:34.568 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:46:34.568 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:46:34.568 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:46:34.568 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:34.568 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:46:34.568 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:46:34.568 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:46:34.728 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:46:34.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:46:34.728 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:34.728 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:46:34.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:46:34.728 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:34.738 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:34.738 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 20:46:34.738 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:34.738 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 20:46:34.918 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:46:34.918 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:46:34.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28621 150' command took 2 ms to send, 1343 ms to get response, and 1354 ms overall
17-03-17 20:46:34.918 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:46:34.918 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.130210214497305. ------
17-03-17 20:46:34.918 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13670 mm
17-03-17 20:46:34.918 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:46:34.918 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:34.928 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:46:34.928 -07 000000429 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 20:46:34.928 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:34.928 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 29862, sync = True, waitForSettling = False)
17-03-17 20:46:34.928 -07 000000433 INF: Z Motor: Moving to -0.136699 mm, started at -0.130210 mm, distance = -6.49 um
17-03-17 20:46:34.928 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:34.928 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 20:46:34.928 -07 000000627 INF: FPGA: Recv YRDPOS 141369
17-03-17 20:46:34.938 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:34.938 -07 000000429 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:35.048 -07 000000433 INF: FPGA: Xmit ZDACW 29862\n [Z Motor]
17-03-17 20:46:35.048 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:46:35.048 -07 000000429 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:46:35.048 -07 000000429 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:46:35.058 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:46:35.058 -07 000000433 INF: FPGA: 'ZDACW 29862' command took 116 ms to send, 0 ms to get response, and 127 ms overall
17-03-17 20:46:35.068 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:46:35.078 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:35.078 -07 000000502 INF: FPGA: Recv ZDACR 29862
17-03-17 20:46:35.088 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:46:35.088 -07 000000433 INF: Z Motor: MoveAbsStepped took 158 ms (did NOT wait for settling yet))
17-03-17 20:46:35.128 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:46:35.138 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:46:35.138 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:35.138 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:46:35.138 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:46:35.138 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:35.138 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:35.138 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:35.138 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:46:35.148 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:46:35.258 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:46:35.258 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 327 ms overall
17-03-17 20:46:35.438 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 20:46:35.438 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 389 ms overall
17-03-17 20:46:35.478 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:35.478 -07 000000502 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:46:35.488 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:46:35.488 -07 000000429 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:35.488 -07 000000429 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:46:35.488 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.845 mm, average velocity = 2.173 mm/sec
17-03-17 20:46:36.438 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:36.438 -07 000000502 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:46:36.448 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:36.448 -07 000000429 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:36.468 -07 000000429 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:46:36.468 -07 000000429 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:46:36.468 -07 000000429 INF: Y Motor: Moved to 69.8638 after 1542 ms (table move)
17-03-17 20:46:36.468 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136699 mm (DAC = 29862)
17-03-17 20:46:36.468 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:36.468 -07 000000626 INF: FPGA: Recv ZSGSRD 30569
17-03-17 20:46:36.478 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:46:36.478 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:36.478 -07 000000429 INF: FPGA: Recv ZSGSRD 30568
17-03-17 20:46:36.488 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:36.488 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:36.488 -07 000000486 INF: FPGA: Recv ZSGSRD 30569
17-03-17 20:46:36.498 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:36.498 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:36.498 -07 000000429 INF: FPGA: Recv ZSGSRD 30576
17-03-17 20:46:36.508 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:36.508 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:36.508 -07 000000438 INF: FPGA: Recv ZSGSRD 30572
17-03-17 20:46:36.518 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:36.518 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:36.518 -07 000000429 INF: FPGA: Recv ZSGSRD 30570
17-03-17 20:46:36.528 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:36.528 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:36.528 -07 000000438 INF: FPGA: Recv ZSGSRD 30573
17-03-17 20:46:36.538 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:36.538 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:36.538 -07 000000502 INF: FPGA: Recv ZSGSRD 30566
17-03-17 20:46:36.548 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:36.548 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:36.548 -07 000000429 INF: FPGA: Recv ZSGSRD 30564
17-03-17 20:46:36.558 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:36.558 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:36.558 -07 000000627 INF: FPGA: Recv ZSGSRD 30566
17-03-17 20:46:36.568 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:36.568 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:36.568 -07 000000438 INF: FPGA: Recv ZPIEZORD 26593
17-03-17 20:46:36.578 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:36.578 -07 000000482 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.557 V. Piezo Error = -8.8 V.
17-03-17 20:46:36.578 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30569 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30569 (-135.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30564 (-135.9 uncal um), Max = 30576 (-136.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:46:36.578 -07 000000482 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30569, posNoise = 7, negNoise = 5
17-03-17 20:46:36.578 -07 000000482 INF: Z Motor: After move to -0.136699, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:36.578 -07 000000482 INF: Z Motor: Settle wait time = 1544 ms, measure time = 104 ms (allowed 150 ms), total time = 1648 ms
17-03-17 20:46:36.578 -07 000000482 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:46:36.628 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1701 ms
17-03-17 20:46:36.628 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:46:36.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:36.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:36.628 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:36.628 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:36.628 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:46:36.628 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:36.628 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:36.628 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:46:36.638 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:46:36.638 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:46:36.648 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:46:36.648 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:46:36.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:46:36.698 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:46:36.818 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:46:36.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:46:36.898 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:46:36.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:46:36.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:46:36.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:46:36.938 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:46:36.938 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:46:36.938 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:46:37.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:46:37.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:37.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:46:37.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:46:37.038 -07 000000502 INF: Autofocus start
17-03-17 20:46:37.038 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:37.038 -07 000000502 INF: MeasureProfile start
17-03-17 20:46:37.038 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:37.048 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:46:37.048 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:46:37.048 -07 000000502 INF: MeasureProfile done
17-03-17 20:46:37.048 -07 000000502 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 20:46:37.048 -07 000000502 INF: Autofocus finished
17-03-17 20:46:37.248 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:46:37.248 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:46:37.248 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.136705092972626. ----------
17-03-17 20:46:37.248 -07 000000610 INF: Cycle	42	Tile	13	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:46:37.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28340, sync = True, waitForSettling = True)
17-03-17 20:46:37.258 -07 000000610 INF: Z Motor: Moving to -0.129732 mm, started at -0.136705 mm, distance = 6.97 um
17-03-17 20:46:37.258 -07 000000610 INF: FPGA: Xmit ZDACW 28340\n [Z Motor]
17-03-17 20:46:37.258 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 20:46:37.268 -07 000000610 INF: FPGA: 'ZDACW 28340' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:37.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:37.268 -07 000000480 INF: FPGA: Recv ZDACR 28340
17-03-17 20:46:37.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:37.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:46:37.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:37.428 -07 000000627 INF: FPGA: Recv ZSGSRD 29479
17-03-17 20:46:37.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:37.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:37.438 -07 000000486 INF: FPGA: Recv ZSGSRD 29483
17-03-17 20:46:37.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:37.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:37.448 -07 000000480 INF: FPGA: Recv ZSGSRD 29482
17-03-17 20:46:37.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:37.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:37.458 -07 000000627 INF: FPGA: Recv ZSGSRD 29482
17-03-17 20:46:37.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:37.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:37.468 -07 000000486 INF: FPGA: Recv ZSGSRD 29484
17-03-17 20:46:37.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:37.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:37.478 -07 000000618 INF: FPGA: Recv ZSGSRD 29485
17-03-17 20:46:37.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:37.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:37.488 -07 000000482 INF: FPGA: Recv ZSGSRD 29481
17-03-17 20:46:37.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:37.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:37.498 -07 000000448 INF: FPGA: Recv ZSGSRD 29479
17-03-17 20:46:37.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:37.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:37.508 -07 000000433 INF: FPGA: Recv ZSGSRD 29484
17-03-17 20:46:37.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:37.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:37.518 -07 000000618 INF: FPGA: Recv ZSGSRD 29487
17-03-17 20:46:37.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:37.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:37.528 -07 000000486 INF: FPGA: Recv ZPIEZORD 25157
17-03-17 20:46:37.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:37.538 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.324 V. Piezo Error = -9.5 V.
17-03-17 20:46:37.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29483 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29482 (-128.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29479 (-128.9 uncal um), Max = 29487 (-129.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:46:37.538 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29483, posNoise = 4, negNoise = 4
17-03-17 20:46:37.538 -07 000000610 INF: Z Motor: After move to -0.129732, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:37.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:46:37.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:37.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:37.538 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:37.538 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:37.538 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:46:37.538 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:37.538 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:46:37.538 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:46:37.538 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:37.538 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:46:37.538 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:46:37.538 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:46:37.538 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:46:37.538 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:46:37.548 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:46:37.548 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:46:37.548 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:46:37.548 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:46:37.548 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:46:37.548 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:46:37.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28517 150\n [Camera]
17-03-17 20:46:37.758 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:46:38.178 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:46:38.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:46:38.178 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:38.178 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:46:38.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:46:38.178 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:38.188 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:38.188 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:46:38.188 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:38.188 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:46:38.368 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28517 804
17-03-17 20:46:38.518 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:46:38.558 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 20:46:38.558 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:46:38.558 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:38.558 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:46:38.558 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:46:38.568 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:38.568 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:38.568 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:46:38.568 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:38.578 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:46:38.718 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:46:38.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:46:38.718 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:38.718 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:38.718 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:46:38.718 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:46:38.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:46:38.728 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:38.728 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:38.728 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 20:46:38.908 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-17 20:46:38.908 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:46:38.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28517 150' command took 2 ms to send, 1349 ms to get response, and 1354 ms overall
17-03-17 20:46:38.918 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:46:38.918 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.129728398586673. ------
17-03-17 20:46:38.918 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:38.918 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13603 mm
17-03-17 20:46:38.918 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:46:38.918 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:38.928 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:46:38.928 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:46:38.928 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29715, sync = True, waitForSettling = False)
17-03-17 20:46:38.928 -07 000000438 INF: Z Motor: Moving to -0.136027 mm, started at -0.129728 mm, distance = -6.30 um
17-03-17 20:46:38.928 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:46:38.928 -07 000000012 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 20:46:38.938 -07 000000438 INF: FPGA: Xmit ZDACW 29715\n [Z Motor]
17-03-17 20:46:38.938 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 20:46:38.948 -07 000000438 INF: FPGA: 'ZDACW 29715' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:46:38.948 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:38.948 -07 000000627 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:46:38.958 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:46:38.958 -07 000000012 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:38.958 -07 000000012 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:46:38.958 -07 000000012 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:46:38.968 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:38.968 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.98264,
17-03-17 20:46:38.968 -07 000000627 INF: FPGA: Recv ZDACR 29715
17-03-17 20:46:38.978 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:46:38.978 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:46:38.978 -07 000000438 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 20:46:39.108 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 20:46:39.108 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:46:39.108 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:39.108 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:46:39.108 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:46:39.108 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:39.118 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:46:39.118 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:46:39.118 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:46:39.118 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:46:39.128 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:46:39.128 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 20:46:39.348 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 20:46:39.348 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 20:46:39.388 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:39.388 -07 000000431 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:46:39.398 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:46:39.398 -07 000000012 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:39.398 -07 000000012 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:46:39.398 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 20:46:40.348 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:40.348 -07 000000462 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:46:40.358 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:40.358 -07 000000012 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:40.378 -07 000000012 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:46:40.378 -07 000000012 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:46:40.378 -07 000000012 INF: Y Motor: Moved to 70.6890 after 1451 ms (table move)
17-03-17 20:46:40.378 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136027 mm (DAC = 29715)
17-03-17 20:46:40.378 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:40.378 -07 000000627 INF: FPGA: Recv ZSGSRD 30464
17-03-17 20:46:40.388 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:46:40.388 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:40.388 -07 000000012 INF: FPGA: Recv ZSGSRD 30465
17-03-17 20:46:40.398 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:40.398 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:40.398 -07 000000627 INF: FPGA: Recv ZSGSRD 30461
17-03-17 20:46:40.408 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:40.408 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:40.408 -07 000000627 INF: FPGA: Recv ZSGSRD 30467
17-03-17 20:46:40.418 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:40.418 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:40.418 -07 000000482 INF: FPGA: Recv ZSGSRD 30467
17-03-17 20:46:40.428 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:40.428 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:40.428 -07 000000431 INF: FPGA: Recv ZSGSRD 30456
17-03-17 20:46:40.438 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:40.438 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:40.438 -07 000000012 INF: FPGA: Recv ZSGSRD 30464
17-03-17 20:46:40.448 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:40.448 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:40.448 -07 000000462 INF: FPGA: Recv ZSGSRD 30463
17-03-17 20:46:40.458 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:40.458 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:40.458 -07 000000482 INF: FPGA: Recv ZSGSRD 30465
17-03-17 20:46:40.468 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:40.468 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:40.468 -07 000000462 INF: FPGA: Recv ZSGSRD 30458
17-03-17 20:46:40.478 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:40.478 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:40.478 -07 000000012 INF: FPGA: Recv ZPIEZORD 26510
17-03-17 20:46:40.488 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:40.488 -07 000000433 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.534 V. Piezo Error = -8.7 V.
17-03-17 20:46:40.488 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30463 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30464 (-135.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30456 (-135.2 uncal um), Max = 30467 (-135.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:46:40.488 -07 000000433 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30463, posNoise = 4, negNoise = 7
17-03-17 20:46:40.488 -07 000000433 INF: Z Motor: After move to -0.136027, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:40.488 -07 000000433 INF: Z Motor: Settle wait time = 1455 ms, measure time = 104 ms (allowed 150 ms), total time = 1559 ms
17-03-17 20:46:40.488 -07 000000433 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:46:40.538 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-17 20:46:40.538 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:46:40.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:40.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:40.538 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:40.538 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:40.538 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:46:40.538 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:40.538 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:40.538 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:46:40.548 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:46:40.548 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:46:40.548 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:46:40.548 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:46:40.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:46:40.598 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:46:40.798 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:46:40.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:46:40.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:46:40.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) start.
17-03-17 20:46:40.838 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:46:40.838 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 20:46:40.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:46:40.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:46:40.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:40.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:46:40.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:46:40.938 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:40.938 -07 000000627 INF: Autofocus start
17-03-17 20:46:40.938 -07 000000627 INF: MeasureProfile start
17-03-17 20:46:40.938 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:40.948 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:46:40.948 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:46:40.948 -07 000000627 INF: MeasureProfile done
17-03-17 20:46:40.948 -07 000000627 INF: X=48  Z correction [um]=0.2069503
17-03-17 20:46:40.948 -07 000000627 INF: Autofocus finished
17-03-17 20:46:41.148 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:46:41.148 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 20:46:41.158 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136024126485599. ----------
17-03-17 20:46:41.158 -07 000000610 INF: Cycle	42	Tile	14	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:46:41.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28273, sync = True, waitForSettling = True)
17-03-17 20:46:41.158 -07 000000610 INF: Z Motor: Moving to -0.129425 mm, started at -0.136024 mm, distance = 6.60 um
17-03-17 20:46:41.158 -07 000000610 INF: FPGA: Xmit ZDACW 28273\n [Z Motor]
17-03-17 20:46:41.158 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:46:41.168 -07 000000610 INF: FPGA: 'ZDACW 28273' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:46:41.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:41.168 -07 000000627 INF: FPGA: Recv ZDACR 28273
17-03-17 20:46:41.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:41.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:46:41.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:41.328 -07 000000482 INF: FPGA: Recv ZSGSRD 29427
17-03-17 20:46:41.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:41.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:41.338 -07 000000627 INF: FPGA: Recv ZSGSRD 29437
17-03-17 20:46:41.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:41.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:41.348 -07 000000482 INF: FPGA: Recv ZSGSRD 29433
17-03-17 20:46:41.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:41.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:41.358 -07 000000438 INF: FPGA: Recv ZSGSRD 29431
17-03-17 20:46:41.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:41.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:41.368 -07 000000462 INF: FPGA: Recv ZSGSRD 29440
17-03-17 20:46:41.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:41.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:41.378 -07 000000482 INF: FPGA: Recv ZSGSRD 29432
17-03-17 20:46:41.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:41.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:41.388 -07 000000627 INF: FPGA: Recv ZSGSRD 29435
17-03-17 20:46:41.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:41.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:41.398 -07 000000482 INF: FPGA: Recv ZSGSRD 29438
17-03-17 20:46:41.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:41.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:41.408 -07 000000627 INF: FPGA: Recv ZSGSRD 29428
17-03-17 20:46:41.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:41.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:41.418 -07 000000433 INF: FPGA: Recv ZSGSRD 29437
17-03-17 20:46:41.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:41.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:41.428 -07 000000627 INF: FPGA: Recv ZPIEZORD 25133
17-03-17 20:46:41.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:41.438 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.314 V. Piezo Error = -9.5 V.
17-03-17 20:46:41.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29434 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29434 (-128.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29427 (-128.6 uncal um), Max = 29440 (-128.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:46:41.438 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29434, posNoise = 6, negNoise = 7
17-03-17 20:46:41.438 -07 000000610 INF: Z Motor: After move to -0.129425, error = 0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:41.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 20:46:41.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:41.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:41.438 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:41.438 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:41.438 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:46:41.438 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:46:41.438 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:46:41.438 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:41.438 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:46:41.438 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:46:41.438 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:41.438 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:46:41.448 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:46:41.448 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:46:41.448 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:46:41.448 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:46:41.458 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:46:41.458 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:46:41.458 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:46:41.458 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:46:41.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28449 150\n [Camera]
17-03-17 20:46:41.658 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:46:41.818 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:46:41.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:46:42.078 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:46:42.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:46:42.078 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:42.078 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:42.078 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-17 20:46:42.078 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:46:42.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:46:42.078 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:42.078 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:42.078 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:46:42.268 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28449 804
17-03-17 20:46:42.418 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:46:42.468 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:46:42.468 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:46:42.468 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:42.468 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 20:46:42.468 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:46:42.468 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:42.478 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:42.478 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:46:42.478 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:42.478 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:46:42.618 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:46:42.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:46:42.618 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:42.618 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:42.618 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:46:42.628 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:46:42.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:46:42.628 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:42.628 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:42.628 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 20:46:42.808 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:46:42.818 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:46:42.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28449 150' command took 2 ms to send, 1350 ms to get response, and 1355 ms overall
17-03-17 20:46:42.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:46:42.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129413612191727. ------
17-03-17 20:46:42.938 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13591 mm
17-03-17 20:46:42.938 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:46:42.938 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:42.938 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:42.938 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 29690, sync = True, waitForSettling = False)
17-03-17 20:46:42.938 -07 000000433 INF: Z Motor: Moving to -0.135912 mm, started at -0.129414 mm, distance = -6.50 um
17-03-17 20:46:42.938 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:46:42.938 -07 000000462 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 20:46:42.948 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:46:42.948 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:42.948 -07 000000623 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:46:42.958 -07 000000433 INF: FPGA: Xmit ZDACW 29690\n [Z Motor]
17-03-17 20:46:42.958 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:46:42.958 -07 000000462 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:42.958 -07 000000462 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:46:42.958 -07 000000462 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:46:42.958 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 20:46:42.968 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:46:42.968 -07 000000433 INF: FPGA: 'ZDACW 29690' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:46:42.978 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:46:42.988 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:42.988 -07 000000012 INF: FPGA: Recv ZDACR 29690
17-03-17 20:46:42.998 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:46:42.998 -07 000000433 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 20:46:43.018 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:46:43.018 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:46:43.028 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:43.028 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:46:43.028 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:46:43.028 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:43.028 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:43.028 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:46:43.028 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:46:43.038 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:46:43.168 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:46:43.168 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:46:43.348 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 20:46:43.348 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:46:43.388 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:43.388 -07 000000433 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:46:43.398 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:46:43.398 -07 000000462 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:43.398 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:46:43.398 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 20:46:44.348 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:44.348 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.98264,
17-03-17 20:46:44.348 -07 000000623 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:46:44.358 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:44.358 -07 000000462 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:44.378 -07 000000462 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:46:44.378 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:46:44.378 -07 000000462 INF: Y Motor: Moved to 71.5190 after 1438 ms (table move)
17-03-17 20:46:44.378 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135912 mm (DAC = 29690)
17-03-17 20:46:44.398 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:44.398 -07 000000431 INF: FPGA: Recv ZSGSRD 30439
17-03-17 20:46:44.408 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:46:44.408 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:44.408 -07 000000623 INF: FPGA: Recv ZSGSRD 30446
17-03-17 20:46:44.418 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:44.418 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:44.418 -07 000000431 INF: FPGA: Recv ZSGSRD 30451
17-03-17 20:46:44.428 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:44.428 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:44.428 -07 000000433 INF: FPGA: Recv ZSGSRD 30455
17-03-17 20:46:44.438 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:44.438 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:44.438 -07 000000462 INF: FPGA: Recv ZSGSRD 30448
17-03-17 20:46:44.448 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:44.448 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:44.448 -07 000000623 INF: FPGA: Recv ZSGSRD 30449
17-03-17 20:46:44.458 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:44.458 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:44.458 -07 000000623 INF: FPGA: Recv ZSGSRD 30441
17-03-17 20:46:44.468 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:44.468 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:44.468 -07 000000623 INF: FPGA: Recv ZSGSRD 30443
17-03-17 20:46:44.478 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:44.478 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:44.478 -07 000000433 INF: FPGA: Recv ZSGSRD 30448
17-03-17 20:46:44.488 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:44.488 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:44.488 -07 000000433 INF: FPGA: Recv ZSGSRD 30449
17-03-17 20:46:44.498 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:44.498 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:44.498 -07 000000482 INF: FPGA: Recv ZPIEZORD 26467
17-03-17 20:46:44.508 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:44.508 -07 000000627 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.530 V. Piezo Error = -8.8 V.
17-03-17 20:46:44.508 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30447 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30448 (-135.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30439 (-135.1 uncal um), Max = 30455 (-135.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:46:44.508 -07 000000627 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30447, posNoise = 8, negNoise = 8
17-03-17 20:46:44.508 -07 000000627 INF: Z Motor: After move to -0.135912, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:44.508 -07 000000627 INF: Z Motor: Settle wait time = 1443 ms, measure time = 122 ms (allowed 150 ms), total time = 1565 ms
17-03-17 20:46:44.508 -07 000000627 INF: Z Motor: Waiting extra 28 ms after reading position to reach expected total of 150 ms
17-03-17 20:46:44.538 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 20:46:44.538 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:46:44.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:44.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:44.538 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:44.538 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:44.538 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:46:44.538 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:44.538 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:44.538 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:46:44.548 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:46:44.548 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:46:44.558 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:46:44.558 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:46:44.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:46:44.608 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:46:44.808 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:46:44.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:46:44.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:46:44.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:46:44.838 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:46:44.848 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 20:46:44.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 20:46:44.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 20:46:44.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:44.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:46:44.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:46:44.948 -07 000000462 INF: Autofocus start
17-03-17 20:46:44.948 -07 000000462 INF: MeasureProfile start
17-03-17 20:46:44.958 -07 000000462 INF: MeasureProfile done
17-03-17 20:46:44.958 -07 000000462 INF: X=45  Z correction [um]=0.1925192
17-03-17 20:46:44.958 -07 000000462 INF: Autofocus finished
17-03-17 20:46:44.968 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:44.968 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:44.978 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:46:44.978 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:46:45.178 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:46:45.178 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:46:45.178 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135921339091331. ----------
17-03-17 20:46:45.178 -07 000000610 INF: Cycle	42	Tile	15	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:46:45.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28244, sync = True, waitForSettling = True)
17-03-17 20:46:45.188 -07 000000610 INF: Z Motor: Moving to -0.129293 mm, started at -0.135921 mm, distance = 6.63 um
17-03-17 20:46:45.188 -07 000000610 INF: FPGA: Xmit ZDACW 28244\n [Z Motor]
17-03-17 20:46:45.188 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:46:45.198 -07 000000610 INF: FPGA: 'ZDACW 28244' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:46:45.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:45.198 -07 000000482 INF: FPGA: Recv ZDACR 28244
17-03-17 20:46:45.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:45.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:46:45.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:45.358 -07 000000623 INF: FPGA: Recv ZSGSRD 29415
17-03-17 20:46:45.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:45.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:45.368 -07 000000433 INF: FPGA: Recv ZSGSRD 29420
17-03-17 20:46:45.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:45.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:45.378 -07 000000623 INF: FPGA: Recv ZSGSRD 29419
17-03-17 20:46:45.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:45.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:45.388 -07 000000433 INF: FPGA: Recv ZSGSRD 29416
17-03-17 20:46:45.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:45.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:45.398 -07 000000627 INF: FPGA: Recv ZSGSRD 29418
17-03-17 20:46:45.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:45.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:45.408 -07 000000431 INF: FPGA: Recv ZSGSRD 29408
17-03-17 20:46:45.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:45.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:45.418 -07 000000462 INF: FPGA: Recv ZSGSRD 29419
17-03-17 20:46:45.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:45.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:45.428 -07 000000623 INF: FPGA: Recv ZSGSRD 29419
17-03-17 20:46:45.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:45.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:45.438 -07 000000627 INF: FPGA: Recv ZSGSRD 29410
17-03-17 20:46:45.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:45.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:45.448 -07 000000431 INF: FPGA: Recv ZSGSRD 29418
17-03-17 20:46:45.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:45.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:45.458 -07 000000482 INF: FPGA: Recv ZPIEZORD 25154
17-03-17 20:46:45.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:45.468 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.310 V. Piezo Error = -9.4 V.
17-03-17 20:46:45.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29416 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29418 (-128.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29408 (-128.5 uncal um), Max = 29420 (-128.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:46:45.468 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29416, posNoise = 4, negNoise = 8
17-03-17 20:46:45.468 -07 000000610 INF: Z Motor: After move to -0.129293, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:45.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:46:45.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:45.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:45.468 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:45.468 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:45.468 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:46:45.468 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:46:45.478 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:46:45.478 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:46:45.478 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:46:45.478 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:45.478 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:45.478 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:46:45.478 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:46:45.478 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:46:45.478 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:46:45.478 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:46:45.498 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:46:45.498 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:46:45.498 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:46:45.498 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:46:45.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28421 150\n [Camera]
17-03-17 20:46:45.698 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:46:46.118 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:46:46.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:46:46.118 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:46.118 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:46:46.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:46:46.118 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:46.128 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:46.128 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:46:46.128 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:46.128 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:46:46.308 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28421 804
17-03-17 20:46:46.458 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:46:46.498 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:46:46.498 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:46:46.498 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:46.498 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:46:46.508 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:46:46.508 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:46.508 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:46.508 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:46.508 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:46:46.518 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:46:46.658 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:46:46.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:46:46.668 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:46.668 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:46:46.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:46:46.668 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:46.668 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:46.668 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 20:46:46.678 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:46.678 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 20:46:46.818 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:46:46.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:46:46.858 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1348
17-03-17 20:46:46.858 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:46:46.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28421 150' command took 2 ms to send, 1351 ms to get response, and 1355 ms overall
17-03-17 20:46:46.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:46:46.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.129297976373175. ------
17-03-17 20:46:46.858 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13533 mm
17-03-17 20:46:46.858 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:46:46.858 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:46.978 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:46.978 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-17 20:46:46.978 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:46:46.978 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29564, sync = True, waitForSettling = False)
17-03-17 20:46:46.978 -07 000000462 INF: Z Motor: Moving to -0.135335 mm, started at -0.129298 mm, distance = -6.04 um
17-03-17 20:46:46.978 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:46:46.978 -07 000000626 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 20:46:46.988 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:46.988 -07 000000480 INF: FPGA: Recv YRDPOS 146472
17-03-17 20:46:46.998 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:46:46.998 -07 000000626 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:46.998 -07 000000462 INF: FPGA: Xmit ZDACW 29564\n [Z Motor]
17-03-17 20:46:46.998 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 20:46:46.998 -07 000000626 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:46:46.998 -07 000000626 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:46:47.008 -07 000000462 INF: FPGA: 'ZDACW 29564' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:46:47.008 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:47.008 -07 000000627 INF: FPGA: Recv ZDACR 29564
17-03-17 20:46:47.018 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:46:47.018 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:47.018 -07 000000462 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 20:46:47.058 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:46:47.058 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:46:47.058 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:47.058 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:46:47.058 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:46:47.058 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:47.068 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:47.068 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:46:47.068 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:46:47.068 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:46:47.178 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:46:47.188 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 205 ms overall
17-03-17 20:46:47.388 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:46:47.388 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:46:47.428 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:47.438 -07 000000486 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:46:47.438 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:46:47.438 -07 000000626 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:47.438 -07 000000626 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:46:47.438 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.146 mm/sec
17-03-17 20:46:48.388 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:48.388 -07 000000502 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:46:48.398 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:48.398 -07 000000626 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:48.418 -07 000000626 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:46:48.418 -07 000000626 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:46:48.418 -07 000000626 INF: Y Motor: Moved to 72.3496 after 1435 ms (table move)
17-03-17 20:46:48.418 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135335 mm (DAC = 29564)
17-03-17 20:46:48.418 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:48.418 -07 000000502 INF: FPGA: Recv ZSGSRD 30356
17-03-17 20:46:48.428 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:46:48.428 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:48.428 -07 000000626 INF: FPGA: Recv ZSGSRD 30356
17-03-17 20:46:48.438 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:48.438 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:48.438 -07 000000626 INF: FPGA: Recv ZSGSRD 30356
17-03-17 20:46:48.448 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:48.448 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:48.448 -07 000000502 INF: FPGA: Recv ZSGSRD 30356
17-03-17 20:46:48.458 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:48.458 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:48.458 -07 000000626 INF: FPGA: Recv ZSGSRD 30359
17-03-17 20:46:48.468 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:48.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:48.468 -07 000000627 INF: FPGA: Recv ZSGSRD 30357
17-03-17 20:46:48.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:48.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:48.478 -07 000000482 INF: FPGA: Recv ZSGSRD 30357
17-03-17 20:46:48.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:48.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:48.488 -07 000000482 INF: FPGA: Recv ZSGSRD 30353
17-03-17 20:46:48.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:48.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:48.498 -07 000000482 INF: FPGA: Recv ZSGSRD 30355
17-03-17 20:46:48.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:48.508 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:48.508 -07 000000482 INF: FPGA: Recv ZSGSRD 30353
17-03-17 20:46:48.518 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:48.518 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:48.518 -07 000000482 INF: FPGA: Recv ZPIEZORD 26393
17-03-17 20:46:48.528 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:48.528 -07 000000431 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.511 V. Piezo Error = -8.7 V.
17-03-17 20:46:48.528 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30356 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30356 (-134.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30353 (-134.5 uncal um), Max = 30359 (-134.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:46:48.528 -07 000000431 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30356, posNoise = 3, negNoise = 3
17-03-17 20:46:48.528 -07 000000431 INF: Z Motor: After move to -0.135335, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:48.528 -07 000000431 INF: Z Motor: Settle wait time = 1439 ms, measure time = 104 ms (allowed 150 ms), total time = 1543 ms
17-03-17 20:46:48.528 -07 000000431 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:46:48.578 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1713 ms
17-03-17 20:46:48.578 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:46:48.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:48.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:48.578 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:48.578 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:48.588 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:46:48.588 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:48.588 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:46:48.588 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:46:48.588 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:46:48.588 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:46:48.598 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:46:48.598 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:46:48.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:46:48.638 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:46:48.838 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:46:48.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:46:48.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:46:48.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:46:48.878 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:46:48.878 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 20:46:48.878 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:46:48.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:46:48.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:48.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:46:48.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:46:48.978 -07 000000482 INF: Autofocus start
17-03-17 20:46:48.978 -07 000000482 INF: MeasureProfile start
17-03-17 20:46:48.978 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:48.988 -07 000000482 INF: MeasureProfile done
17-03-17 20:46:48.988 -07 000000482 INF: X=80  Z correction [um]=0.3608828
17-03-17 20:46:48.988 -07 000000482 INF: Autofocus finished
17-03-17 20:46:48.988 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:48.988 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 9 ms to get response, and 15 ms overall
17-03-17 20:46:48.988 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:46:49.198 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:46:49.198 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 20:46:49.198 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135336735786431. ----------
17-03-17 20:46:49.198 -07 000000610 INF: Cycle	42	Tile	16	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:46:49.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28155, sync = True, waitForSettling = True)
17-03-17 20:46:49.208 -07 000000610 INF: Z Motor: Moving to -0.128885 mm, started at -0.135337 mm, distance = 6.45 um
17-03-17 20:46:49.208 -07 000000610 INF: FPGA: Xmit ZDACW 28155\n [Z Motor]
17-03-17 20:46:49.208 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 20:46:49.218 -07 000000610 INF: FPGA: 'ZDACW 28155' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:46:49.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:49.218 -07 000000431 INF: FPGA: Recv ZDACR 28155
17-03-17 20:46:49.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:49.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:46:49.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:49.378 -07 000000482 INF: FPGA: Recv ZSGSRD 29348
17-03-17 20:46:49.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:49.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:49.388 -07 000000482 INF: FPGA: Recv ZSGSRD 29355
17-03-17 20:46:49.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:49.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:49.408 -07 000000431 INF: FPGA: Recv ZSGSRD 29349
17-03-17 20:46:49.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:46:49.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:49.418 -07 000000482 INF: FPGA: Recv ZSGSRD 29351
17-03-17 20:46:49.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:49.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:49.428 -07 000000482 INF: FPGA: Recv ZSGSRD 29351
17-03-17 20:46:49.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:49.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:49.438 -07 000000431 INF: FPGA: Recv ZSGSRD 29354
17-03-17 20:46:49.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:49.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:49.448 -07 000000482 INF: FPGA: Recv ZSGSRD 29354
17-03-17 20:46:49.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:49.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:49.458 -07 000000569 INF: FPGA: Recv ZSGSRD 29355
17-03-17 20:46:49.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:49.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:49.468 -07 000000482 INF: FPGA: Recv ZSGSRD 29350
17-03-17 20:46:49.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:49.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:49.478 -07 000000012 INF: FPGA: Recv ZSGSRD 29354
17-03-17 20:46:49.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:49.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:49.488 -07 000000012 INF: FPGA: Recv ZPIEZORD 25098
17-03-17 20:46:49.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:49.498 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.296 V. Piezo Error = -9.3 V.
17-03-17 20:46:49.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29352 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29352 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29348 (-128.1 uncal um), Max = 29355 (-128.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:46:49.498 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29352, posNoise = 3, negNoise = 4
17-03-17 20:46:49.498 -07 000000610 INF: Z Motor: After move to -0.128885, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:49.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 20:46:49.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:49.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:49.498 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:49.498 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:49.498 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:46:49.498 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:49.498 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:46:49.498 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:46:49.498 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:46:49.498 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:46:49.498 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:46:49.498 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:46:49.508 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:46:49.508 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:46:49.508 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:46:49.508 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:46:49.518 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 20:46:49.518 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:46:49.518 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:46:49.518 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:46:49.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28332 150\n [Camera]
17-03-17 20:46:49.718 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.985358,
17-03-17 20:46:49.718 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:46:50.138 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:46:50.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:46:50.138 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:50.138 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:46:50.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:46:50.138 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:50.148 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:50.148 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:46:50.148 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:50.148 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:46:50.338 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28332 804
17-03-17 20:46:50.478 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:46:50.518 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:46:50.518 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:46:50.518 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:50.528 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:46:50.528 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:46:50.528 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:46:50.528 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:50.528 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:46:50.528 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:46:50.528 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:46:50.678 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:46:50.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:46:50.678 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:50.688 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:50.688 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:46:50.688 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:46:50.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:46:51.088 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 20:46:51.088 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:46:51.088 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:51.098 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:46:51.098 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:46:51.738 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:46:51.738 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:46:51.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28332 150' command took 2 ms to send, 2210 ms to get response, and 2214 ms overall
17-03-17 20:46:51.738 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:51.738 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:51.738 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 20:46:51.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:46:51.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128886826796103. ------
17-03-17 20:46:51.738 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:51.738 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13540 mm
17-03-17 20:46:51.738 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:46:51.738 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:51.748 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:46:51.748 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:46:51.748 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:46:51.748 -07 000000618 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 20:46:51.748 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29577, sync = True, waitForSettling = False)
17-03-17 20:46:51.748 -07 000000438 INF: Z Motor: Moving to -0.135395 mm, started at -0.128887 mm, distance = -6.51 um
17-03-17 20:46:51.758 -07 000000438 INF: FPGA: Xmit ZDACW 29577\n [Z Motor]
17-03-17 20:46:51.758 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:46:51.768 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:51.768 -07 000000438 INF: FPGA: 'ZDACW 29577' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:46:51.768 -07 000000429 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:46:51.778 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:51.778 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:46:51.778 -07 000000618 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:51.778 -07 000000429 INF: FPGA: Recv ZDACR 29577
17-03-17 20:46:51.778 -07 000000618 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:46:51.778 -07 000000618 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:46:51.788 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:46:51.788 -07 000000438 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 20:46:51.788 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:46:51.818 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:46:51.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:46:51.948 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:46:51.948 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:46:52.138 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:46:52.138 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:46:52.138 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:52.138 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:46:52.148 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:46:52.158 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 20:46:52.158 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 20:46:52.198 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:52.198 -07 000000012 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:46:52.208 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:46:52.208 -07 000000618 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:52.208 -07 000000618 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 20:46:52.208 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.843 mm, average velocity = 2.195 mm/sec
17-03-17 20:46:53.158 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:53.158 -07 000000012 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:46:53.168 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:53.168 -07 000000618 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:53.188 -07 000000618 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:46:53.188 -07 000000618 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:46:53.188 -07 000000618 INF: Y Motor: Moved to 73.1763 after 1443 ms (table move)
17-03-17 20:46:53.188 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135395 mm (DAC = 29577)
17-03-17 20:46:53.188 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:53.198 -07 000000438 INF: FPGA: Recv ZSGSRD 30373
17-03-17 20:46:53.198 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:46:53.198 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:53.198 -07 000000438 INF: FPGA: Recv ZSGSRD 30359
17-03-17 20:46:53.208 -07 000000482 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:53.208 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:53.208 -07 000000438 INF: FPGA: Recv ZSGSRD 30360
17-03-17 20:46:53.218 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:53.218 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:53.218 -07 000000438 INF: FPGA: Recv ZSGSRD 30374
17-03-17 20:46:53.228 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:53.228 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:53.228 -07 000000012 INF: FPGA: Recv ZSGSRD 30371
17-03-17 20:46:53.238 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:53.238 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:53.238 -07 000000012 INF: FPGA: Recv ZSGSRD 30370
17-03-17 20:46:53.248 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:53.248 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:53.248 -07 000000438 INF: FPGA: Recv ZSGSRD 30372
17-03-17 20:46:53.258 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:53.258 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:53.258 -07 000000012 INF: FPGA: Recv ZSGSRD 30366
17-03-17 20:46:53.268 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:53.268 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:53.268 -07 000000438 INF: FPGA: Recv ZSGSRD 30366
17-03-17 20:46:53.278 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:53.278 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:53.278 -07 000000618 INF: FPGA: Recv ZSGSRD 30357
17-03-17 20:46:53.288 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:53.288 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:53.288 -07 000000438 INF: FPGA: Recv ZPIEZORD 26377
17-03-17 20:46:53.298 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:53.298 -07 000000482 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.513 V. Piezo Error = -8.8 V.
17-03-17 20:46:53.298 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30367 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30368 (-134.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30357 (-134.6 uncal um), Max = 30374 (-134.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:46:53.298 -07 000000482 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30367, posNoise = 7, negNoise = 10
17-03-17 20:46:53.298 -07 000000482 INF: Z Motor: After move to -0.135395, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:53.298 -07 000000482 INF: Z Motor: Settle wait time = 1446 ms, measure time = 103 ms (allowed 150 ms), total time = 1549 ms
17-03-17 20:46:53.298 -07 000000482 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:46:53.348 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 20:46:53.348 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:46:53.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:53.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:53.348 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:53.348 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:46:53.348 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:53.348 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:53.348 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:46:53.348 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:46:53.358 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:46:53.358 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:46:53.368 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:46:53.368 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:46:53.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:46:53.418 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:46:53.618 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:46:53.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:46:53.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:46:53.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) start.
17-03-17 20:46:53.658 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:46:53.658 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 20:46:53.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:46:53.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:46:53.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:53.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:46:53.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:46:53.758 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:53.758 -07 000000012 INF: Autofocus start
17-03-17 20:46:53.758 -07 000000012 INF: MeasureProfile start
17-03-17 20:46:53.758 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:53.768 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:46:53.768 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:46:53.768 -07 000000012 INF: MeasureProfile done
17-03-17 20:46:53.768 -07 000000012 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:46:53.768 -07 000000012 INF: Autofocus finished
17-03-17 20:46:53.968 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:46:53.968 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:46:53.968 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.13540740211999. ----------
17-03-17 20:46:53.968 -07 000000610 INF: Cycle	42	Tile	17	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:46:53.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28085, sync = True, waitForSettling = True)
17-03-17 20:46:53.978 -07 000000610 INF: Z Motor: Moving to -0.128565 mm, started at -0.135407 mm, distance = 6.84 um
17-03-17 20:46:53.978 -07 000000610 INF: FPGA: Xmit ZDACW 28085\n [Z Motor]
17-03-17 20:46:53.978 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 20:46:53.988 -07 000000610 INF: FPGA: 'ZDACW 28085' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:46:53.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:53.988 -07 000000618 INF: FPGA: Recv ZDACR 28085
17-03-17 20:46:53.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:53.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:46:54.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:54.148 -07 000000486 INF: FPGA: Recv ZSGSRD 29306
17-03-17 20:46:54.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:46:54.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:54.158 -07 000000012 INF: FPGA: Recv ZSGSRD 29307
17-03-17 20:46:54.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:54.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:54.168 -07 000000462 INF: FPGA: Recv ZSGSRD 29304
17-03-17 20:46:54.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:54.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:54.178 -07 000000618 INF: FPGA: Recv ZSGSRD 29298
17-03-17 20:46:54.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:54.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:54.188 -07 000000482 INF: FPGA: Recv ZSGSRD 29308
17-03-17 20:46:54.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:54.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:54.198 -07 000000438 INF: FPGA: Recv ZSGSRD 29305
17-03-17 20:46:54.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:54.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:54.208 -07 000000623 INF: FPGA: Recv ZSGSRD 29301
17-03-17 20:46:54.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:54.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:54.218 -07 000000012 INF: FPGA: Recv ZSGSRD 29298
17-03-17 20:46:54.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:54.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:54.228 -07 000000462 INF: FPGA: Recv ZSGSRD 29305
17-03-17 20:46:54.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:54.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:54.238 -07 000000480 INF: FPGA: Recv ZSGSRD 29301
17-03-17 20:46:54.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:54.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:54.248 -07 000000482 INF: FPGA: Recv ZPIEZORD 24977
17-03-17 20:46:54.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:54.258 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.285 V. Piezo Error = -9.5 V.
17-03-17 20:46:54.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29303 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29304 (-127.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29298 (-127.8 uncal um), Max = 29308 (-127.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:46:54.258 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29303, posNoise = 5, negNoise = 5
17-03-17 20:46:54.258 -07 000000610 INF: Z Motor: After move to -0.128565, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:54.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:46:54.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:54.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:54.258 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:54.258 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:46:54.258 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:54.258 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:54.258 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:46:54.258 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:46:54.258 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:46:54.258 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:46:54.258 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:46:54.258 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:46:54.268 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:46:54.268 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:46:54.268 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:46:54.268 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:46:54.278 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:46:54.278 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:46:54.278 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:46:54.278 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:46:54.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28261 150\n [Camera]
17-03-17 20:46:54.478 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:46:54.898 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:46:54.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:46:54.898 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:54.898 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:54.898 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start.
17-03-17 20:46:54.908 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:46:54.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:46:54.908 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:54.908 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:54.908 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:46:55.078 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 3.983999,
17-03-17 20:46:55.098 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28261 804
17-03-17 20:46:55.248 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:46:55.298 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:46:55.298 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:46:55.298 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:55.298 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:46:55.298 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:46:55.298 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:55.298 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:46:55.298 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:46:55.308 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:46:55.318 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:46:55.448 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:46:55.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:46:55.448 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:46:55.448 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:46:55.448 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:46:55.448 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:46:55.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:46:55.448 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:46:55.448 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:46:55.448 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start.
17-03-17 20:46:55.638 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1349
17-03-17 20:46:55.638 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:46:55.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28261 150' command took 2 ms to send, 1347 ms to get response, and 1358 ms overall
17-03-17 20:46:55.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:46:55.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128572040401156. ------
17-03-17 20:46:55.848 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 20:46:55.848 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:46:55.848 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:55.858 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:46:55.858 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:46:55.858 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:46:55.858 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:46:55.858 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:46:55.858 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:46:55.868 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:46:55.988 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:46:55.988 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13494 mm
17-03-17 20:46:55.988 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:46:56.978 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:46:56.978 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:46:56.978 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 980 ms to get response, and 990 ms overall
17-03-17 20:46:56.978 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:46:56.978 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:46:56.978 -07 000000627 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 20:46:56.988 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:56.998 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:46:57.508 -07 000000502 INF: FPGA: Recv YRDPOS 149866
17-03-17 20:46:57.508 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:46:57.508 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 500 ms to get response, and 529 ms overall
17-03-17 20:46:57.508 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 510 ms to get response, and 527 ms overall
17-03-17 20:46:57.508 -07 000000627 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:57.508 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29477, sync = True, waitForSettling = False)
17-03-17 20:46:57.508 -07 000000502 INF: Z Motor: Moving to -0.134937 mm, started at -0.128572 mm, distance = -6.37 um
17-03-17 20:46:57.508 -07 000000627 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:46:57.508 -07 000000627 INF: Y Motor: Moving 1353 steps-33
17-03-17 20:46:57.518 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:46:57.528 -07 000000502 INF: FPGA: Xmit ZDACW 29477\n [Z Motor]
17-03-17 20:46:57.528 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 20:46:57.538 -07 000000502 INF: FPGA: 'ZDACW 29477' command took 2 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:46:57.538 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:46:58.568 -07 000000433 INF: FPGA: Recv ZDACR 29477
17-03-17 20:46:58.568 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 20:46:58.568 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 1020 ms to get response, and 1030 ms overall
17-03-17 20:46:58.568 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1040 ms to get response, and 1054 ms overall
17-03-17 20:46:58.568 -07 000000502 INF: Z Motor: MoveAbsStepped took 1058 ms (did NOT wait for settling yet))
17-03-17 20:46:58.598 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:58.598 -07 000000502 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:46:58.608 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:46:58.608 -07 000000627 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:58.608 -07 000000627 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:46:58.608 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1055 ms, distance = 0.846 mm, average velocity = 0.802 mm/sec
17-03-17 20:46:59.558 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:46:59.558 -07 000000433 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:46:59.568 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:59.568 -07 000000627 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:46:59.578 -07 000000627 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:46:59.578 -07 000000627 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:46:59.578 -07 000000627 INF: Y Motor: Moved to 74.0083 after 2604 ms (table move)
17-03-17 20:46:59.588 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134937 mm (DAC = 29477)
17-03-17 20:46:59.588 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:59.588 -07 000000627 INF: FPGA: Recv ZSGSRD 30292
17-03-17 20:46:59.598 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:59.598 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:59.598 -07 000000627 INF: FPGA: Recv ZSGSRD 30299
17-03-17 20:46:59.608 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:59.608 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:59.608 -07 000000502 INF: FPGA: Recv ZSGSRD 30292
17-03-17 20:46:59.618 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:59.618 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:59.618 -07 000000433 INF: FPGA: Recv ZSGSRD 30296
17-03-17 20:46:59.628 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:59.628 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:59.628 -07 000000627 INF: FPGA: Recv ZSGSRD 30294
17-03-17 20:46:59.638 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:59.638 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:59.638 -07 000000433 INF: FPGA: Recv ZSGSRD 30293
17-03-17 20:46:59.648 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:59.648 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:59.648 -07 000000627 INF: FPGA: Recv ZSGSRD 30296
17-03-17 20:46:59.658 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:59.658 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:59.658 -07 000000502 INF: FPGA: Recv ZSGSRD 30295
17-03-17 20:46:59.668 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:59.668 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:59.668 -07 000000627 INF: FPGA: Recv ZSGSRD 30296
17-03-17 20:46:59.678 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:59.678 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:46:59.678 -07 000000502 INF: FPGA: Recv ZSGSRD 30298
17-03-17 20:46:59.688 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:59.688 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:46:59.688 -07 000000433 INF: FPGA: Recv ZPIEZORD 26327
17-03-17 20:46:59.698 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:46:59.698 -07 000000486 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.498 V. Piezo Error = -8.7 V.
17-03-17 20:46:59.698 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30295 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30296 (-134.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30292 (-134.1 uncal um), Max = 30299 (-134.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:46:59.698 -07 000000486 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30295, posNoise = 4, negNoise = 3
17-03-17 20:46:59.698 -07 000000486 INF: Z Motor: After move to -0.134937, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:46:59.698 -07 000000486 INF: Z Motor: Settle wait time = 2077 ms, measure time = 110 ms (allowed 150 ms), total time = 2187 ms
17-03-17 20:46:59.698 -07 000000486 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 20:46:59.738 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3746 ms
17-03-17 20:46:59.738 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:46:59.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:46:59.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:46:59.738 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:46:59.738 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:46:59.738 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:46:59.738 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:46:59.738 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:46:59.738 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:46:59.748 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:46:59.748 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:46:59.758 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:46:59.758 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:46:59.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:46:59.808 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:47:00.008 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:47:00.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:47:00.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:47:00.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:47:00.038 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:47:00.048 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 20:47:00.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 20:47:00.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 20:47:00.128 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:47:00.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:47:00.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 20:47:00.148 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:47:00.148 -07 000000547 INF: Autofocus start
17-03-17 20:47:00.148 -07 000000547 INF: MeasureProfile start
17-03-17 20:47:00.148 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:47:00.158 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:47:00.158 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:47:00.158 -07 000000547 INF: MeasureProfile done
17-03-17 20:47:00.158 -07 000000547 INF: X=17  Z correction [um]=0.05782829
17-03-17 20:47:00.158 -07 000000547 INF: Autofocus finished
17-03-17 20:47:00.358 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:47:00.358 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:47:00.358 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134944858845783. ----------
17-03-17 20:47:00.358 -07 000000610 INF: Cycle	42	Tile	18	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:47:00.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28002, sync = True, waitForSettling = True)
17-03-17 20:47:00.368 -07 000000610 INF: Z Motor: Moving to -0.128185 mm, started at -0.134945 mm, distance = 6.76 um
17-03-17 20:47:00.368 -07 000000610 INF: FPGA: Xmit ZDACW 28002\n [Z Motor]
17-03-17 20:47:00.368 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 20:47:00.378 -07 000000610 INF: FPGA: 'ZDACW 28002' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:47:00.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:47:00.378 -07 000000627 INF: FPGA: Recv ZDACR 28002
17-03-17 20:47:00.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:00.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:47:00.438 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.019446,
17-03-17 20:47:00.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:00.538 -07 000000433 INF: FPGA: Recv ZSGSRD 29243
17-03-17 20:47:00.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:00.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:00.548 -07 000000547 INF: FPGA: Recv ZSGSRD 29244
17-03-17 20:47:00.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:00.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:00.558 -07 000000429 INF: FPGA: Recv ZSGSRD 29241
17-03-17 20:47:00.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:00.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:00.568 -07 000000547 INF: FPGA: Recv ZSGSRD 29239
17-03-17 20:47:00.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:00.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:00.578 -07 000000429 INF: FPGA: Recv ZSGSRD 29246
17-03-17 20:47:00.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:00.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:00.588 -07 000000547 INF: FPGA: Recv ZSGSRD 29248
17-03-17 20:47:00.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:00.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:00.598 -07 000000431 INF: FPGA: Recv ZSGSRD 29245
17-03-17 20:47:00.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:00.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:00.608 -07 000000627 INF: FPGA: Recv ZSGSRD 29244
17-03-17 20:47:00.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:00.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:00.618 -07 000000547 INF: FPGA: Recv ZSGSRD 29243
17-03-17 20:47:00.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:00.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:00.628 -07 000000569 INF: FPGA: Recv ZSGSRD 29246
17-03-17 20:47:00.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:00.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:47:00.638 -07 000000547 INF: FPGA: Recv ZPIEZORD 24896
17-03-17 20:47:00.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:00.648 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.273 V. Piezo Error = -9.5 V.
17-03-17 20:47:00.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29244 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29244 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29239 (-127.4 uncal um), Max = 29248 (-127.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:47:00.648 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29244, posNoise = 4, negNoise = 5
17-03-17 20:47:00.648 -07 000000610 INF: Z Motor: After move to -0.128185, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:47:00.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:47:00.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:47:00.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:47:00.648 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:47:00.648 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:47:00.648 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:47:00.648 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:47:00.648 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:47:00.648 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:47:00.648 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:47:00.648 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:47:00.648 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:47:00.648 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:47:00.658 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:47:00.658 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:47:00.658 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:47:00.658 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:47:00.668 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:47:00.668 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:47:00.668 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:47:00.668 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:47:00.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28179 150\n [Camera]
17-03-17 20:47:00.878 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:47:01.288 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:47:01.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:47:01.298 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:47:01.298 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:47:01.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:47:01.298 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:47:01.298 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:47:01.298 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:47:01.298 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:47:01.298 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:47:01.668 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 367 ms.
17-03-17 20:47:01.668 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-17 20:47:01.668 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:47:01.668 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 20:47:01.668 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:47:01.668 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:47:01.678 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:47:01.678 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:47:01.678 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:47:01.678 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:47:01.688 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28179 804
17-03-17 20:47:01.688 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:47:01.818 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:47:01.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:47:01.838 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1157
17-03-17 20:47:01.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1157
17-03-17 20:47:01.838 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:47:01.838 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:47:01.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:47:01.848 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:47:01.958 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:47:01.958 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 20:47:01.968 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:47:01.968 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) start.
17-03-17 20:47:02.338 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:47:02.338 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:47:02.338 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:47:02.338 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:47:02.338 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:47:02.338 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:47:02.348 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:47:02.348 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-17 20:47:02.348 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:47:02.348 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-17 20:47:02.418 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:47:02.418 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:47:02.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28179 150' command took 2 ms to send, 1729 ms to get response, and 1739 ms overall
17-03-17 20:47:02.418 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:47:02.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.128193011884792. ------
17-03-17 20:47:02.418 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:47:02.418 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13456 mm
17-03-17 20:47:02.418 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:47:03.238 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:47:03.238 -07 000000623 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 20:47:03.238 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:47:04.238 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:47:04.238 -07 000000448 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:47:04.238 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-17 20:47:04.238 -07 000000623 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:47:04.238 -07 000000623 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:47:04.238 -07 000000623 INF: Y Motor: Moving 1351 steps-29
17-03-17 20:47:04.238 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:47:04.238 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1810 ms to get response, and 1815 ms overall
17-03-17 20:47:04.238 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 29394, sync = True, waitForSettling = False)
17-03-17 20:47:04.238 -07 000000448 INF: Z Motor: Moving to -0.134557 mm, started at -0.128193 mm, distance = -6.36 um
17-03-17 20:47:04.248 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:47:04.258 -07 000000448 INF: FPGA: Xmit ZDACW 29394\n [Z Motor]
17-03-17 20:47:06.238 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 20:47:06.238 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:47:06.238 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 20:47:06.238 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1990 ms to get response, and 1999 ms overall
17-03-17 20:47:06.238 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1980 ms to get response, and 1998 ms overall
17-03-17 20:47:06.238 -07 000000448 INF: FPGA: 'ZDACW 29394' command took 0 ms to send, 1970 ms to get response, and 1997 ms overall
17-03-17 20:47:06.258 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:47:06.258 -07 000000627 INF: FPGA: Recv ZDACR 29394
17-03-17 20:47:06.268 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:47:06.268 -07 000000448 INF: Z Motor: MoveAbsStepped took 2027 ms (did NOT wait for settling yet))
17-03-17 20:47:06.268 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:47:06.268 -07 000000618 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:47:06.278 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:47:06.278 -07 000000623 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:47:06.278 -07 000000623 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 20:47:06.278 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1999 ms, distance = 0.844 mm, average velocity = 0.422 mm/sec
17-03-17 20:47:06.548 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.045313,
17-03-17 20:47:06.818 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:47:06.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 41. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:47:07.228 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:47:07.228 -07 000000618 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:47:07.238 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:47:07.238 -07 000000623 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:47:07.248 -07 000000623 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:47:07.248 -07 000000623 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:47:07.248 -07 000000623 INF: Y Motor: Moved to 74.8325 after 4014 ms (table move)
17-03-17 20:47:07.258 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134557 mm (DAC = 29394)
17-03-17 20:47:07.258 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:07.258 -07 000000448 INF: FPGA: Recv ZSGSRD 30236
17-03-17 20:47:07.268 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:07.268 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:07.268 -07 000000623 INF: FPGA: Recv ZSGSRD 30234
17-03-17 20:47:07.278 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:07.278 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:07.278 -07 000000462 INF: FPGA: Recv ZSGSRD 30235
17-03-17 20:47:07.288 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:07.288 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:07.288 -07 000000480 INF: FPGA: Recv ZSGSRD 30236
17-03-17 20:47:07.298 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:07.298 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:07.298 -07 000000462 INF: FPGA: Recv ZSGSRD 30237
17-03-17 20:47:07.308 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:07.308 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:07.308 -07 000000623 INF: FPGA: Recv ZSGSRD 30237
17-03-17 20:47:07.318 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:07.318 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:07.318 -07 000000482 INF: FPGA: Recv ZSGSRD 30235
17-03-17 20:47:07.328 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:07.328 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:07.328 -07 000000618 INF: FPGA: Recv ZSGSRD 30235
17-03-17 20:47:07.338 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:07.338 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:07.338 -07 000000627 INF: FPGA: Recv ZSGSRD 30231
17-03-17 20:47:07.348 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:07.348 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:07.348 -07 000000448 INF: FPGA: Recv ZSGSRD 30232
17-03-17 20:47:07.358 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:07.358 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:47:07.358 -07 000000618 INF: FPGA: Recv ZPIEZORD 26229
17-03-17 20:47:07.368 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:07.368 -07 000000502 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.485 V. Piezo Error = -8.8 V.
17-03-17 20:47:07.368 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30235 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30235 (-133.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30231 (-133.7 uncal um), Max = 30237 (-133.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:47:07.368 -07 000000502 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30235, posNoise = 2, negNoise = 4
17-03-17 20:47:07.368 -07 000000502 INF: Z Motor: After move to -0.134557, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:47:07.368 -07 000000502 INF: Z Motor: Settle wait time = 3018 ms, measure time = 109 ms (allowed 150 ms), total time = 3127 ms
17-03-17 20:47:07.368 -07 000000502 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 20:47:07.418 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4994 ms
17-03-17 20:47:07.418 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:47:07.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:47:07.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:47:07.418 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:47:07.418 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:47:07.418 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:47:07.418 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:47:07.418 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:47:07.418 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:47:07.428 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:47:07.428 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:47:07.438 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:47:07.438 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 20:47:07.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:47:07.488 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:47:07.678 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:47:07.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:47:07.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:47:07.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 20:47:07.718 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:47:07.728 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 20:47:07.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 20:47:07.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:47:07.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:47:07.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:47:07.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:47:07.828 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:47:07.828 -07 000000438 INF: Autofocus start
17-03-17 20:47:07.828 -07 000000438 INF: MeasureProfile start
17-03-17 20:47:07.838 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:47:07.838 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:47:07.838 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:47:07.848 -07 000000438 INF: MeasureProfile done
17-03-17 20:47:07.848 -07 000000438 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:47:07.848 -07 000000438 INF: Autofocus finished
17-03-17 20:47:08.038 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:47:08.038 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 20:47:08.048 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134559406117278. ----------
17-03-17 20:47:08.048 -07 000000610 INF: Cycle	42	Tile	19	Exposure Settings		A	419	G	201	T	201	C	419
17-03-17 20:47:08.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27889, sync = True, waitForSettling = True)
17-03-17 20:47:08.048 -07 000000610 INF: Z Motor: Moving to -0.127668 mm, started at -0.134559 mm, distance = 6.89 um
17-03-17 20:47:08.048 -07 000000610 INF: FPGA: Xmit ZDACW 27889\n [Z Motor]
17-03-17 20:47:08.058 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 20:47:08.058 -07 000000610 INF: FPGA: 'ZDACW 27889' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 20:47:08.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:47:08.058 -07 000000448 INF: FPGA: Recv ZDACR 27889
17-03-17 20:47:08.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:47:08.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:47:08.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:08.218 -07 000000502 INF: FPGA: Recv ZSGSRD 29169
17-03-17 20:47:08.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:47:08.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:08.228 -07 000000448 INF: FPGA: Recv ZSGSRD 29161
17-03-17 20:47:08.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:08.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:08.238 -07 000000482 INF: FPGA: Recv ZSGSRD 29155
17-03-17 20:47:08.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:08.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:08.248 -07 000000502 INF: FPGA: Recv ZSGSRD 29163
17-03-17 20:47:08.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:08.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:08.258 -07 000000480 INF: FPGA: Recv ZSGSRD 29168
17-03-17 20:47:08.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:08.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:08.268 -07 000000482 INF: FPGA: Recv ZSGSRD 29166
17-03-17 20:47:08.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:08.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:08.278 -07 000000502 INF: FPGA: Recv ZSGSRD 29162
17-03-17 20:47:08.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:08.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:08.288 -07 000000482 INF: FPGA: Recv ZSGSRD 29158
17-03-17 20:47:08.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:08.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:08.298 -07 000000627 INF: FPGA: Recv ZSGSRD 29167
17-03-17 20:47:08.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:08.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:47:08.308 -07 000000623 INF: FPGA: Recv ZSGSRD 29158
17-03-17 20:47:08.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:08.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:47:08.318 -07 000000448 INF: FPGA: Recv ZPIEZORD 24830
17-03-17 20:47:08.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:08.328 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.256 V. Piezo Error = -9.5 V.
17-03-17 20:47:08.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29163 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29162 (-126.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29155 (-126.8 uncal um), Max = 29169 (-126.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:47:08.328 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29163, posNoise = 6, negNoise = 8
17-03-17 20:47:08.328 -07 000000610 INF: Z Motor: After move to -0.127668, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:47:08.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:47:08.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:47:08.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:47:08.328 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:47:08.328 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:47:08.328 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:47:08.328 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:47:08.328 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:47:08.328 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:47:08.328 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:47:08.328 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:47:08.328 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:47:08.328 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:47:08.338 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:47:08.338 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:47:08.338 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:47:08.338 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:47:08.348 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:47:08.348 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:47:08.348 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:47:08.348 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:47:08.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 419 419 201 201 28065 150\n [Camera]
17-03-17 20:47:08.548 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:47:08.968 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 611
17-03-17 20:47:08.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 611
17-03-17 20:47:08.968 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:47:08.968 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 611
17-03-17 20:47:08.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 611
17-03-17 20:47:08.968 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:47:08.968 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:47:08.978 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:47:08.978 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:47:08.978 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 20:47:09.158 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28065 804
17-03-17 20:47:09.308 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 954
17-03-17 20:47:09.348 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:47:09.348 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:47:09.348 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:47:09.348 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 20:47:09.348 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 20:47:09.348 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:47:09.348 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:47:09.348 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:47:09.348 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:47:09.358 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:47:09.508 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1155
17-03-17 20:47:09.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1155
17-03-17 20:47:09.518 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:47:09.518 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:47:09.518 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:47:09.518 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1155
17-03-17 20:47:09.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1155
17-03-17 20:47:09.518 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:47:09.518 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:47:09.518 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:47:09.708 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1347
17-03-17 20:47:09.708 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:47:09.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 419 419 201 201 28065 150' command took 2 ms to send, 1351 ms to get response, and 1358 ms overall
17-03-17 20:47:09.918 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:47:09.918 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:47:09.918 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:47:09.918 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:47:09.918 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:47:09.918 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:47:09.918 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:47:09.918 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:47:09.918 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:47:09.918 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:47:09.928 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:47:09.968 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:47:09.968 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:47:10.008 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 20:47:10.018 -07 000000610 INF: Enabling Skipping AutoFocus in the next 2 cycles.
17-03-17 20:47:10.018 -07 000000610 INF: Imaging Cycle 42: ScanTilesCommand Cycle 42 time end. Duration was 165896 ms.
17-03-17 20:47:10.018 -07 000000610 INF: =================== Cycle #42 ===================
17-03-17 20:47:10.018 -07 000000610 INF: ===================  ===================
17-03-17 20:47:10.018 -07 000000482 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:47:10.028 -07 000000429 INF: FPGA: Recv EXLED1ADCR 22
17-03-17 20:47:10.028 -07 000000482 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:47:10.028 -07 000000482 INF: GreenLED: Using Green data: Photodiode ADC 22 --> 0.0 mW (old method), or 1.6 mW (new method). Difference = 1.6 mW
17-03-17 20:47:10.028 -07 000000482 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 42, FrontChillerTemperature: 4.045313, FrontChillerHeatSinkTemperature: 0.425983, AmbientTemperature: 19.04019, FlowCellCompartmentTemperature: 22.00126, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.89404, GreenLEDSensorTemperature: 26.09866, PhotodiodePowerAdcGreen: 22, PhotodiodePowerMwGreen: 1.562308
17-03-17 20:47:10.058 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.