17-03-17 20:47:10.108 -07 000000610 INF: =================== Cycle #43 ===================
17-03-17 20:47:10.108 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 20:47:10.118 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 20:47:10.118 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:47:10.118 -07 000000482 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:47:10.128 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:10.128 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:47:10.128 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 20:47:10.128 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 20:47:10.128 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 20:47:10.238 -07 000000429 INF: FPGA: Recv YMVTO 154378 871
17-03-17 20:47:10.238 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 116 ms overall
17-03-17 20:47:10.238 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 20:47:10.238 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 20:47:10.238 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 20:47:11.818 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:47:11.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:47:11.928 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.02213,
17-03-17 20:47:13.238 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:47:13.238 -07 000000482 INF: FPGA: Recv YRDPOS 154380
17-03-17 20:47:13.248 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:13.248 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:47:13.258 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:47:13.258 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 20:47:13.258 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3148 ms
17-03-17 20:47:13.268 -07 000000610 INF: =================== Cycle #43, Flow Cell Temp 60° ===================
17-03-17 20:47:13.268 -07 000000610 INF: =================== Cycle #43, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 20:47:13.268 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 20:47:13.268 -07 000000482 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:47:13.278 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:47:13.278 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:47:13.278 -07 000000429 INF: FPGA: Recv TEC2EN 
17-03-17 20:47:13.288 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:13.288 -07 000000610 INF: =================== Cycle #43, Flow Cell Temp 60° ===================
17-03-17 20:47:13.288 -07 000000610 INF: =================== Cycle #43 ===================
17-03-17 20:47:13.288 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:47:13.288 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:47:13.318 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:47:13.318 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 20:47:13.318 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:47:13.618 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:47:13.638 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:47:13.638 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:47:13.688 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:47:13.708 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:47:13.708 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:47:13.808 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3) ===================
17-03-17 20:47:13.808 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:47:13.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:47:13.838 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:47:13.838 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:47:13.838 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:47:13.968 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:47:14.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:47:16.818 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:47:16.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:47:17.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:17.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:47:17.298 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.983999,
17-03-17 20:47:17.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:17.618 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:47:18.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:18.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:47:18.068 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:47:18.068 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3) ===================
17-03-17 20:47:18.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:47:18.228 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:47:18.228 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:47:18.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:47:18.388 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:47:18.388 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:47:18.388 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:47:18.518 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:47:18.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:47:18.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:19.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:47:19.008 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:47:19.008 -07 000000610 INF: =================== Cycle #43 ===================
17-03-17 20:47:20.228 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:47:20.228 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 20:47:20.228 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:47:20.248 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:47:20.248 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 20:47:20.248 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 20:47:20.378 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:47:20.398 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 20:47:20.398 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 20:47:20.448 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:47:20.468 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:47:20.468 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:47:20.568 -07 000000610 INF: =================== Cycle #43, Pumping Reagent CMS (4) ===================
17-03-17 20:47:20.568 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:47:20.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:47:20.598 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:47:20.598 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:47:20.598 -07 000000610 INF: =================== Cycle #43, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 20:47:20.728 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:47:20.768 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:47:21.818 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:47:21.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=609, R2=631, Total=1240. Warn if over 250 bubbles per interval.
17-03-17 20:47:22.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:22.238 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:47:22.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:22.668 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.015368,
17-03-17 20:47:22.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:47:22.688 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:47:22.688 -07 000000610 INF: =================== Cycle #43, Pumping Reagent CMS (4) ===================
17-03-17 20:47:22.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:47:22.848 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:47:22.848 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:47:22.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:47:23.008 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:47:23.008 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:47:23.008 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:47:23.138 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:47:23.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:47:23.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:23.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:47:23.628 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:47:23.628 -07 000000610 INF: =================== Cycle #43 ===================
17-03-17 20:47:24.848 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 20:47:24.848 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:47:24.848 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:47:24.868 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:47:24.868 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 20:47:24.868 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 20:47:25.018 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:47:25.038 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 20:47:25.038 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 20:47:25.088 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:47:25.108 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:47:25.108 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:47:25.208 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3) ===================
17-03-17 20:47:25.208 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:47:25.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:47:25.238 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:47:25.238 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:47:25.238 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:47:25.368 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:47:25.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:47:26.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:26.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:47:26.308 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:47:26.308 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3) ===================
17-03-17 20:47:26.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:47:26.468 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:47:26.468 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:47:26.598 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:47:26.628 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:47:26.628 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:47:26.628 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:47:26.758 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:47:26.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:47:26.818 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 20:47:26.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=610, R2=632, Total=1242. Warn if over 250 bubbles per interval.
17-03-17 20:47:27.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:27.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:47:27.248 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:47:27.248 -07 000000610 INF: =================== Cycle #43 ===================
17-03-17 20:47:27.248 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:47:27.248 -07 000000429 INF: WaitCommand(10000) start
17-03-17 20:47:27.248 -07 000000502 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:47:28.048 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.997626,
17-03-17 20:47:28.468 -07 000000502 INF: AsyncDelayTimer waited 1213ms
17-03-17 20:47:28.468 -07 000000502 INF: LanePump: Xmit /1?\r
17-03-17 20:47:28.498 -07 000000502 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:47:28.498 -07 000000502 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:47:28.628 -07 000000502 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:47:28.668 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:47:30.198 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:30.228 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:47:30.648 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:30.678 -07 000000502 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:47:30.678 -07 000000502 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:47:30.678 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:47:30.678 -07 000000502 INF: ===================  ===================
17-03-17 20:47:31.818 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 20:47:31.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=610, R2=633, Total=1243. Warn if over 250 bubbles per interval.
17-03-17 20:47:33.408 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.970374,
17-03-17 20:47:36.818 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:47:36.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=610, R2=633, Total=1243. Warn if over 250 bubbles per interval.
17-03-17 20:47:37.258 -07 000000429 INF: WaitCommand(10000) end
17-03-17 20:47:37.258 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3) ===================
17-03-17 20:47:37.258 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 20:47:37.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:47:37.288 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:47:37.288 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:47:37.288 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:47:37.418 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 20:47:37.458 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:47:38.788 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.994908,
17-03-17 20:47:41.818 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 20:47:41.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=611, R2=634, Total=1245. Warn if over 250 bubbles per interval.
17-03-17 20:47:43.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:43.618 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:47:44.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:44.068 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:47:44.148 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.007176,
17-03-17 20:47:44.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:44.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:47:44.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:44.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:47:45.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:45.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:47:45.418 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 20:47:45.418 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3) ===================
17-03-17 20:47:45.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:47:45.578 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:47:45.578 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:47:45.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:47:45.738 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:47:45.738 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:47:45.738 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:47:45.868 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:47:45.898 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:47:46.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:46.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:47:46.358 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:47:46.358 -07 000000610 INF: =================== Cycle #43 ===================
17-03-17 20:47:46.818 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2
17-03-17 20:47:46.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=613, R2=637, Total=1250. Warn if over 250 bubbles per interval.
17-03-17 20:47:47.578 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 20:47:47.578 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 20:47:47.578 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:47:47.598 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:47:47.598 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 20:47:47.598 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 20:47:47.808 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:47:47.828 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 20:47:47.828 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 20:47:47.878 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:47:47.898 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:47:47.898 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:47:47.998 -07 000000610 INF: =================== Cycle #43, Pumping Reagent IMT (1) ===================
17-03-17 20:47:47.998 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:47:47.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:47:48.028 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:47:48.028 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:47:48.028 -07 000000610 INF: =================== Cycle #43, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 20:47:48.158 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:47:48.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:47:49.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:49.868 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.027603,
17-03-17 20:47:49.878 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:47:50.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:50.328 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:47:50.328 -07 000000610 INF: LanePump: Waited 2129 ms for pump motion to complete
17-03-17 20:47:50.328 -07 000000610 INF: =================== Cycle #43, Pumping Reagent IMT (1) ===================
17-03-17 20:47:50.458 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:47:50.488 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:47:50.488 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:47:50.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:47:50.648 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:47:50.648 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:47:50.648 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:47:50.778 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:47:50.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:47:51.238 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:51.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:47:51.268 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:47:51.268 -07 000000610 INF: =================== Cycle #43 ===================
17-03-17 20:47:51.818 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:47:51.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=613, R2=637, Total=1250. Warn if over 250 bubbles per interval.
17-03-17 20:47:52.488 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 20:47:52.488 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:47:52.488 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:47:52.508 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:47:52.508 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 20:47:52.508 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:47:52.738 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:47:52.758 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 20:47:52.758 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 20:47:52.808 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:47:52.828 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:47:52.828 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:47:52.928 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3) ===================
17-03-17 20:47:52.928 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:47:52.928 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:47:52.958 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:47:52.958 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:47:52.958 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:47:53.088 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:47:53.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:47:53.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:54.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:47:54.028 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:47:54.028 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3) ===================
17-03-17 20:47:54.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:47:54.188 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:47:54.188 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:47:54.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:47:54.348 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:47:54.348 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:47:54.348 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:47:54.478 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:47:54.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:47:54.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:47:54.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:47:54.968 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:47:54.968 -07 000000610 INF: =================== Cycle #43 ===================
17-03-17 20:47:54.968 -07 000000610 INF: =================== Cycle #43, Flow Cell Temp 65° ===================
17-03-17 20:47:54.968 -07 000000610 INF: =================== Cycle #43, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 20:47:55.248 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:47:55.248 -07 000000462 INF: FPGA: Recv TEC2EN 
17-03-17 20:47:55.258 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:47:55.258 -07 000000610 INF: =================== Cycle #43, Flow Cell Temp 65° ===================
17-03-17 20:47:55.258 -07 000000610 INF: =================== Cycle #43 ===================
17-03-17 20:47:55.258 -07 000000610 INF: WaitCommand(30000) start
17-03-17 20:47:55.518 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.024884,
17-03-17 20:47:56.818 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:47:56.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=613, R2=637, Total=1250. Warn if over 250 bubbles per interval.
17-03-17 20:48:00.898 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.99219,
17-03-17 20:48:01.818 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:48:01.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=613, R2=637, Total=1250. Warn if over 250 bubbles per interval.
17-03-17 20:48:06.258 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.007176,
17-03-17 20:48:06.818 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:48:06.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=613, R2=637, Total=1250. Warn if over 250 bubbles per interval.
17-03-17 20:48:11.628 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.999021,
17-03-17 20:48:11.818 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:48:11.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=613, R2=637, Total=1250. Warn if over 250 bubbles per interval.
17-03-17 20:48:16.818 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:48:16.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=613, R2=637, Total=1250. Warn if over 250 bubbles per interval.
17-03-17 20:48:17.008 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.986717,
17-03-17 20:48:21.818 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:48:21.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=613, R2=637, Total=1250. Warn if over 250 bubbles per interval.
17-03-17 20:48:22.368 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.011254,
17-03-17 20:48:25.268 -07 000000610 INF: WaitCommand(30000) end
17-03-17 20:48:25.268 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3) ===================
17-03-17 20:48:25.268 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 20:48:25.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:48:25.308 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:48:25.308 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:48:25.308 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:48:25.438 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 20:48:25.478 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:48:26.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:48:26.048 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:48:26.048 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 20:48:26.048 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3) ===================
17-03-17 20:48:26.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:48:26.208 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:48:26.208 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:48:26.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:48:26.368 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:48:26.368 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:48:26.368 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:48:26.498 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:48:26.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:48:26.818 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 20:48:26.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=614, R2=637, Total=1251. Warn if over 250 bubbles per interval.
17-03-17 20:48:26.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:48:26.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:48:26.988 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:48:26.988 -07 000000610 INF: =================== Cycle #43 ===================
17-03-17 20:48:26.988 -07 000000429 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:48:26.988 -07 000000626 INF: WaitCommand(30000) start
17-03-17 20:48:26.988 -07 000000429 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:48:27.748 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.008536,
17-03-17 20:48:28.208 -07 000000429 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:48:28.208 -07 000000429 INF: LanePump: Xmit /1?\r
17-03-17 20:48:28.238 -07 000000429 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:48:28.238 -07 000000429 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:48:28.368 -07 000000429 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:48:28.408 -07 000000429 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:48:30.748 -07 000000429 INF: LanePump: Xmit /1Q\r
17-03-17 20:48:30.778 -07 000000429 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:48:31.198 -07 000000429 INF: LanePump: Xmit /1Q\r
17-03-17 20:48:31.228 -07 000000429 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:48:31.228 -07 000000429 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 20:48:31.228 -07 000000429 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:48:31.228 -07 000000429 INF: ===================  ===================
17-03-17 20:48:31.818 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:48:31.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=614, R2=637, Total=1251. Warn if over 250 bubbles per interval.
17-03-17 20:48:33.108 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.008536,
17-03-17 20:48:36.818 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 20:48:36.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=614, R2=638, Total=1252. Warn if over 250 bubbles per interval.
17-03-17 20:48:38.478 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.049392,
17-03-17 20:48:41.818 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:48:41.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=614, R2=638, Total=1252. Warn if over 250 bubbles per interval.
17-03-17 20:48:43.858 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.016692,
17-03-17 20:48:46.818 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:48:46.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=614, R2=638, Total=1252. Warn if over 250 bubbles per interval.
17-03-17 20:48:49.218 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.986717,
17-03-17 20:48:51.818 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:48:51.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=614, R2=638, Total=1252. Warn if over 250 bubbles per interval.
17-03-17 20:48:54.598 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.973092,
17-03-17 20:48:56.818 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:48:56.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=614, R2=638, Total=1252. Warn if over 250 bubbles per interval.
17-03-17 20:48:56.998 -07 000000626 INF: WaitCommand(30000) end
17-03-17 20:48:56.998 -07 000000610 INF: =================== Cycle #43, Flow Cell Temp 22° ===================
17-03-17 20:48:56.998 -07 000000610 INF: =================== Cycle #43, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 20:48:56.998 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 20:48:56.998 -07 000000459 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:48:57.008 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:48:57.008 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:48:57.008 -07 000000433 INF: FPGA: Recv TEC2EN 
17-03-17 20:48:57.018 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:48:57.018 -07 000000610 INF: =================== Cycle #43, Flow Cell Temp 22° ===================
17-03-17 20:48:57.018 -07 000000610 INF: =================== Cycle #43 ===================
17-03-17 20:48:57.018 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3) ===================
17-03-17 20:48:57.018 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:48:57.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:48:57.058 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:48:57.058 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:48:57.058 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:48:57.188 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:48:57.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:48:59.958 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.969015,
17-03-17 20:49:00.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:49:00.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:49:00.808 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:49:00.838 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:49:01.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:49:01.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:49:01.288 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:49:01.288 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3) ===================
17-03-17 20:49:01.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:49:01.448 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:49:01.448 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:49:01.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:49:01.608 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:49:01.608 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:49:01.608 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:49:01.738 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:49:01.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:49:01.818 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 20:49:01.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=615, R2=639, Total=1254. Warn if over 250 bubbles per interval.
17-03-17 20:49:02.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:49:02.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:49:02.228 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:49:02.228 -07 000000610 INF: =================== Cycle #43 ===================
17-03-17 20:49:03.448 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 20:49:03.448 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 20:49:03.448 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:49:03.468 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:49:03.468 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 20:49:03.468 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 20:49:03.618 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:49:03.638 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:49:03.638 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:49:03.688 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:49:03.708 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:49:03.708 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:49:03.808 -07 000000610 INF: =================== Cycle #43, Pumping Reagent USM (2) ===================
17-03-17 20:49:03.808 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:49:03.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:49:03.838 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:49:03.838 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:49:03.838 -07 000000610 INF: =================== Cycle #43, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 20:49:03.968 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:49:04.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:49:05.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:49:06.238 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.970374,
17-03-17 20:49:06.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:49:06.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:49:06.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:49:06.698 -07 000000610 INF: LanePump: Waited 2689 ms for pump motion to complete
17-03-17 20:49:06.698 -07 000000610 INF: =================== Cycle #43, Pumping Reagent USM (2) ===================
17-03-17 20:49:06.818 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 4
17-03-17 20:49:06.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=4, R2=1, Total=5. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=640, Total=1259. Warn if over 250 bubbles per interval.
17-03-17 20:49:06.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:49:06.858 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:49:06.858 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:49:06.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:49:07.018 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:49:07.018 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:49:07.018 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:49:07.148 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:49:07.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:49:07.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:49:07.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:49:07.638 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:49:07.638 -07 000000610 INF: =================== Cycle #43 ===================
17-03-17 20:49:08.858 -07 000000610 INF: AsyncDelayTimer waited 1220ms
17-03-17 20:49:08.858 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:49:08.858 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:49:08.878 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:49:08.878 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 20:49:08.878 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:49:09.028 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:49:09.048 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:49:09.048 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:49:09.098 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:49:09.118 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:49:09.118 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:49:09.218 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3) ===================
17-03-17 20:49:09.218 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:49:09.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:49:09.248 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:49:09.248 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:49:09.248 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:49:09.378 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:49:09.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:49:10.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:49:10.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:49:10.318 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:49:10.318 -07 000000610 INF: =================== Cycle #43, Pumping Reagent PR2 (3) ===================
17-03-17 20:49:10.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:49:10.478 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:49:10.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:49:10.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:49:10.638 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:49:10.638 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:49:10.638 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:49:10.768 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:49:10.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:49:11.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:49:11.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:49:11.258 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:49:11.258 -07 000000610 INF: =================== Cycle #43 ===================
17-03-17 20:49:11.258 -07 000000448 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:49:11.258 -07 000000541 INF: WaitCommand(10000) start
17-03-17 20:49:11.258 -07 000000448 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:49:11.598 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.96762,
17-03-17 20:49:11.818 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 20:49:11.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:49:12.478 -07 000000448 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:49:12.478 -07 000000448 INF: LanePump: Xmit /1?\r
17-03-17 20:49:12.508 -07 000000448 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:49:12.508 -07 000000448 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:49:12.638 -07 000000448 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:49:12.678 -07 000000448 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:49:14.208 -07 000000448 INF: LanePump: Xmit /1Q\r
17-03-17 20:49:14.238 -07 000000448 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:49:14.658 -07 000000448 INF: LanePump: Xmit /1Q\r
17-03-17 20:49:14.688 -07 000000448 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:49:14.688 -07 000000448 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:49:14.688 -07 000000448 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:49:14.688 -07 000000448 INF: ===================  ===================
17-03-17 20:49:16.818 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:49:16.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:49:16.958 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.989471,
17-03-17 20:49:21.268 -07 000000541 INF: WaitCommand(10000) end
17-03-17 20:49:21.268 -07 000000610 INF: =================== Cycle #43, Imaging ===================
17-03-17 20:49:21.268 -07 000000610 INF: Imaging Cycle 43: ScanTilesCommand Cycle 43 time start.
17-03-17 20:49:21.268 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 20:49:21.268 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:49:21.298 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:49:21.298 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 20:49:21.298 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 20:49:21.598 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:49:21.618 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:49:21.618 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:49:21.668 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:49:21.688 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:49:21.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:49:21.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:49:21.688 -07 000000502 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 20:49:21.688 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:49:21.688 -07 000000502 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 20:49:21.698 -07 000000415 INF: FPGA: Recv EXLED1ON 
17-03-17 20:49:21.698 -07 000000502 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:49:21.698 -07 000000502 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 20:49:21.698 -07 000000415 INF: FPGA: Recv EXLED1ADCR 23212
17-03-17 20:49:21.708 -07 000000502 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:21.708 -07 000000502 INF: RedLED: Using Red data: Photodiode ADC 23212 --> 7.5 mW (old method), or 205.7 mW (new method). Difference = 198.3 mW
17-03-17 20:49:21.708 -07 000000502 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 20:49:21.708 -07 000000448 INF: FPGA: Recv EXLED1OFF 
17-03-17 20:49:21.718 -07 000000502 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:21.718 -07 000000502 INF: RedLED: LED was on for 19 ms
17-03-17 20:49:21.718 -07 000000502 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 20:49:21.718 -07 000000502 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 20:49:21.718 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:49:21.718 -07 000000502 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 20:49:21.718 -07 000000433 INF: FPGA: Recv EXLED2ON 
17-03-17 20:49:21.728 -07 000000502 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:49:21.728 -07 000000502 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:49:21.728 -07 000000541 INF: FPGA: Recv EXLED1ADCR 2094
17-03-17 20:49:21.738 -07 000000502 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:21.738 -07 000000502 INF: GreenLED: Using Green data: Photodiode ADC 2094 --> 0.9 mW (old method), or 182.0 mW (new method). Difference = 181.1 mW
17-03-17 20:49:21.738 -07 000000502 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 20:49:21.738 -07 000000459 INF: FPGA: Recv EXLED2OFF 
17-03-17 20:49:21.748 -07 000000502 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:21.748 -07 000000502 INF: GreenLED: LED was on for 19 ms
17-03-17 20:49:21.748 -07 000000502 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 20:49:21.748 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:49:21.748 -07 000000459 INF: FPGA: Recv EMCUR 
17-03-17 20:49:21.758 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:49:21.758 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 20:49:21.818 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:49:21.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:49:22.258 -07 000000541 INF: FPGA: Recv EMOUT
17-03-17 20:49:22.258 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 20:49:22.258 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 20:49:22.258 -07 000000626 INF: FPGA: Recv EMCUR 
17-03-17 20:49:22.268 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:49:22.268 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:49:22.268 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.12767265070131. ------
17-03-17 20:49:22.268 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:49:22.268 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17948 mm
17-03-17 20:49:22.268 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:49:22.268 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:49:22.268 -07 000000433 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 20:49:22.268 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 39207, sync = True, waitForSettling = False)
17-03-17 20:49:22.268 -07 000000626 INF: Z Motor: Moving to -0.179478 mm, started at -0.127673 mm, distance = -51.81 um
17-03-17 20:49:22.268 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:49:22.278 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:49:22.278 -07 000000626 INF: FPGA: Xmit ZDACW 39207\n [Z Motor]
17-03-17 20:49:22.278 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:49:22.288 -07 000000626 INF: FPGA: 'ZDACW 39207' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:49:22.288 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:49:22.298 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:22.298 -07 000000608 INF: FPGA: Recv YRDPOS 154380
17-03-17 20:49:22.308 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 20:49:22.308 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:49:22.308 -07 000000433 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:22.308 -07 000000433 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 20:49:22.308 -07 000000433 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:49:22.308 -07 000000429 INF: FPGA: Recv ZDACR 39207
17-03-17 20:49:22.318 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:49:22.318 -07 000000626 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:49:22.328 -07 000000433 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:49:22.328 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.027603,
17-03-17 20:49:22.488 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:49:22.488 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 215 ms overall
17-03-17 20:49:24.008 -07 000000448 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 20:49:24.008 -07 000000433 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-17 20:49:24.008 -07 000000433 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:49:24.008 -07 000000433 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24775 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 20:49:24.008 -07 000000433 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.468 mm, average velocity = 9.072 mm/sec
17-03-17 20:49:26.818 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:49:26.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:49:26.858 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:26.858 -07 000000541 INF: FPGA: Recv YRDPOS 122697
17-03-17 20:49:26.868 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:49:26.868 -07 000000433 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:26.888 -07 000000433 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:49:26.888 -07 000000433 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 20:49:26.888 -07 000000433 INF: Y Motor: Moved to 59.9106 after 4616 ms
17-03-17 20:49:26.888 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179478 mm (DAC = 39207)
17-03-17 20:49:26.888 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:26.898 -07 000000433 INF: FPGA: Recv ZSGSRD 37228
17-03-17 20:49:26.898 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:49:26.898 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:26.898 -07 000000433 INF: FPGA: Recv ZSGSRD 37230
17-03-17 20:49:26.908 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:26.908 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:26.908 -07 000000433 INF: FPGA: Recv ZSGSRD 37226
17-03-17 20:49:26.918 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:26.918 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:26.918 -07 000000433 INF: FPGA: Recv ZSGSRD 37229
17-03-17 20:49:26.928 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:26.928 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:26.928 -07 000000433 INF: FPGA: Recv ZSGSRD 37227
17-03-17 20:49:26.938 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:26.938 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:26.938 -07 000000433 INF: FPGA: Recv ZSGSRD 37231
17-03-17 20:49:26.948 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:26.948 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:26.948 -07 000000541 INF: FPGA: Recv ZSGSRD 37229
17-03-17 20:49:26.958 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:26.958 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:26.958 -07 000000433 INF: FPGA: Recv ZSGSRD 37229
17-03-17 20:49:26.968 -07 000000502 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:26.968 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:26.968 -07 000000433 INF: FPGA: Recv ZSGSRD 37224
17-03-17 20:49:26.978 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:26.978 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:26.978 -07 000000541 INF: FPGA: Recv ZSGSRD 37227
17-03-17 20:49:26.988 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:26.988 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:49:26.988 -07 000000433 INF: FPGA: Recv ZPIEZORD 33706
17-03-17 20:49:26.998 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:26.998 -07 000000502 INF: Z Motor: Piezo is near 52.0 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.983 V. Piezo Error = -7.8 V.
17-03-17 20:49:26.998 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37228 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37228 (-178.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 37224 (-178.6 uncal um), Max = 37231 (-178.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:49:26.998 -07 000000502 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37228, posNoise = 3, negNoise = 4
17-03-17 20:49:26.998 -07 000000502 INF: Z Motor: After move to -0.179478, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:49:26.998 -07 000000502 INF: Z Motor: Settle wait time = 4619 ms, measure time = 103 ms (allowed 150 ms), total time = 4722 ms
17-03-17 20:49:26.998 -07 000000502 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:49:27.048 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4774 ms
17-03-17 20:49:27.048 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:49:27.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:49:27.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:49:27.048 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:49:27.048 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:49:27.048 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:49:27.048 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:49:27.048 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:49:27.048 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:49:27.078 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 20:49:27.078 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:49:27.078 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:49:27.078 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:49:27.088 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:49:27.088 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 40 ms.
17-03-17 20:49:27.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:49:27.138 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:49:27.338 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:49:27.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:49:27.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:49:27.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:49:27.388 -07 000000541 INF: FPGA: Recv @CAMSNAP 282
17-03-17 20:49:27.388 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 20:49:27.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 294 ms overall
17-03-17 20:49:27.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 20:49:27.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:27.468 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:49:27.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 20:49:27.488 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:49:27.488 -07 000000502 INF: Image SNR check: start
17-03-17 20:49:27.488 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:49:27.498 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:49:27.498 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:49:27.498 -07 000000502 INF: Image SNR check: pass  [peak (Max-Min)=65.60]
17-03-17 20:49:27.508 -07 000000502 INF: Autofocus start
17-03-17 20:49:27.508 -07 000000502 INF: MeasureProfile start
17-03-17 20:49:27.518 -07 000000502 INF: MeasureProfile done
17-03-17 20:49:27.518 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:49:27.518 -07 000000502 INF: Autofocus finished
17-03-17 20:49:27.698 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.990831,
17-03-17 20:49:27.698 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:49:27.698 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-17 20:49:27.698 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.179483921624612. ----------
17-03-17 20:49:27.698 -07 000000610 INF: Cycle	43	Tile	1	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:49:27.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37704, sync = True, waitForSettling = True)
17-03-17 20:49:27.708 -07 000000610 INF: Z Motor: Moving to -0.172598 mm, started at -0.179484 mm, distance = 6.89 um
17-03-17 20:49:27.728 -07 000000610 INF: FPGA: Xmit ZDACW 37704\n [Z Motor]
17-03-17 20:49:27.728 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:49:27.738 -07 000000610 INF: FPGA: 'ZDACW 37704' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:49:27.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:49:27.748 -07 000000608 INF: FPGA: Recv ZDACR 37704
17-03-17 20:49:27.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:49:27.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:49:27.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:27.908 -07 000000576 INF: FPGA: Recv ZSGSRD 36159
17-03-17 20:49:27.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:49:27.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:27.918 -07 000000608 INF: FPGA: Recv ZSGSRD 36153
17-03-17 20:49:27.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:27.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:27.928 -07 000000576 INF: FPGA: Recv ZSGSRD 36160
17-03-17 20:49:27.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:27.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:27.938 -07 000000608 INF: FPGA: Recv ZSGSRD 36158
17-03-17 20:49:27.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:27.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:27.948 -07 000000608 INF: FPGA: Recv ZSGSRD 36159
17-03-17 20:49:27.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:27.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:27.958 -07 000000576 INF: FPGA: Recv ZSGSRD 36157
17-03-17 20:49:27.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:27.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:27.968 -07 000000576 INF: FPGA: Recv ZSGSRD 36153
17-03-17 20:49:27.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:27.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:27.978 -07 000000576 INF: FPGA: Recv ZSGSRD 36162
17-03-17 20:49:27.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:27.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:27.988 -07 000000576 INF: FPGA: Recv ZSGSRD 36153
17-03-17 20:49:27.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:27.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:27.998 -07 000000502 INF: FPGA: Recv ZSGSRD 36154
17-03-17 20:49:28.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:28.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:49:28.008 -07 000000576 INF: FPGA: Recv ZPIEZORD 32278
17-03-17 20:49:28.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:28.018 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.753 V. Piezo Error = -8.6 V.
17-03-17 20:49:28.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36157 (-171.7 uncal um), Error = 0.9 uncal um, Median = 36158 (-171.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36153 (-171.7 uncal um), Max = 36162 (-171.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:49:28.018 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36157, posNoise = 5, negNoise = 4
17-03-17 20:49:28.018 -07 000000610 INF: Z Motor: After move to -0.172598, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:49:28.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 307 ms)
17-03-17 20:49:28.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:49:28.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:49:28.018 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:49:28.018 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:49:28.018 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:49:28.018 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:49:28.018 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:49:28.018 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:49:28.018 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:49:28.018 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:49:28.018 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:49:28.018 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:49:28.028 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:49:28.028 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:49:28.038 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:49:28.038 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:49:28.048 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 20:49:28.048 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:49:28.048 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:49:28.048 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:49:28.058 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 20:49:28.058 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 20:49:28.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37880 150\n [Camera]
17-03-17 20:49:28.258 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:49:28.688 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-17 20:49:28.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-17 20:49:28.688 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:49:28.688 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:49:28.688 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1057034288, 0x0, 391868352) start.
17-03-17 20:49:28.688 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 615
17-03-17 20:49:28.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 615
17-03-17 20:49:28.688 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:49:28.688 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:49:28.688 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1092456552, 0x0, 418435064) start.
17-03-17 20:49:28.878 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37880 806
17-03-17 20:49:29.028 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:49:29.088 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1057034288, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:49:29.088 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:49:29.088 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:29.088 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1092456552, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:49:29.088 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:49:29.088 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:29.098 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:49:29.098 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:49:29.098 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:49:29.108 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:49:29.228 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:49:29.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:49:29.228 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:49:29.228 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:49:29.228 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1144753880, 0x0, 391868352) start.
17-03-17 20:49:29.228 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:49:29.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:49:29.228 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:49:29.228 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:49:29.228 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-17 20:49:29.418 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:49:29.418 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:49:29.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37880 150' command took 2 ms to send, 1346 ms to get response, and 1357 ms overall
17-03-17 20:49:29.418 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:49:29.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172603590420786. ------
17-03-17 20:49:29.428 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:49:29.428 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17896 mm
17-03-17 20:49:29.428 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:49:29.428 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:49:29.428 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 39094, sync = True, waitForSettling = False)
17-03-17 20:49:29.428 -07 000000576 INF: Z Motor: Moving to -0.178961 mm, started at -0.172604 mm, distance = -6.36 um
17-03-17 20:49:29.428 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:49:29.428 -07 000000448 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 20:49:29.438 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:49:29.438 -07 000000576 INF: FPGA: Xmit ZDACW 39094\n [Z Motor]
17-03-17 20:49:29.438 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:49:29.448 -07 000000576 INF: FPGA: 'ZDACW 39094' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:49:29.448 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:49:29.448 -07 000000626 INF: FPGA: Recv ZDACR 39094
17-03-17 20:49:29.458 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:29.458 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:29.458 -07 000000576 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 20:49:29.458 -07 000000429 INF: FPGA: Recv YRDPOS 122697
17-03-17 20:49:29.468 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:49:29.468 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 20:49:29.468 -07 000000448 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:29.468 -07 000000448 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:49:29.468 -07 000000448 INF: Y Motor: Moving 1331 steps2
17-03-17 20:49:29.478 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:49:29.618 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:49:29.618 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:49:29.618 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:29.618 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1144753880, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:49:29.618 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:49:29.618 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:29.628 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:49:29.628 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:49:29.628 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:49:29.638 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:49:29.668 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:49:29.668 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 20:49:29.848 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:49:29.848 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 388 ms overall
17-03-17 20:49:29.888 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:30.738 -07 000000459 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:49:30.738 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 840 ms to get response, and 850 ms overall
17-03-17 20:49:30.738 -07 000000448 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:30.738 -07 000000448 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:49:30.738 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.832 mm, average velocity = 2.139 mm/sec
17-03-17 20:49:31.688 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:31.688 -07 000000576 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:49:31.698 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:49:31.698 -07 000000448 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:31.718 -07 000000448 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:49:31.718 -07 000000448 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:49:31.718 -07 000000448 INF: Y Motor: Moved to 60.7334 after 2284 ms (table move)
17-03-17 20:49:31.718 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178961 mm (DAC = 39094)
17-03-17 20:49:31.718 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:31.728 -07 000000429 INF: FPGA: Recv ZSGSRD 37149
17-03-17 20:49:31.728 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:49:31.728 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:31.728 -07 000000576 INF: FPGA: Recv ZSGSRD 37158
17-03-17 20:49:31.738 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:49:31.738 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:31.738 -07 000000626 INF: FPGA: Recv ZSGSRD 37145
17-03-17 20:49:31.748 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:31.748 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:31.748 -07 000000448 INF: FPGA: Recv ZSGSRD 37147
17-03-17 20:49:31.758 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:31.758 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:31.758 -07 000000462 INF: FPGA: Recv ZSGSRD 37149
17-03-17 20:49:31.768 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:31.768 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:31.768 -07 000000459 INF: FPGA: Recv ZSGSRD 37147
17-03-17 20:49:31.778 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:31.778 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:31.778 -07 000000459 INF: FPGA: Recv ZSGSRD 37159
17-03-17 20:49:31.788 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:31.788 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:31.788 -07 000000462 INF: FPGA: Recv ZSGSRD 37145
17-03-17 20:49:31.798 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:31.798 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:31.798 -07 000000576 INF: FPGA: Recv ZSGSRD 37147
17-03-17 20:49:31.808 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:31.818 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:31.818 -07 000000462 INF: FPGA: Recv ZSGSRD 37147
17-03-17 20:49:31.818 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:49:31.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:49:31.828 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:49:31.828 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:49:31.828 -07 000000462 INF: FPGA: Recv ZPIEZORD 33636
17-03-17 20:49:31.838 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:31.838 -07 000000382 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.965 V. Piezo Error = -7.8 V.
17-03-17 20:49:31.838 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.0 um, Read 10 ADC samples: Avg = 37149 (-178.1 uncal um), Error = 0.9 uncal um, Median = 37147 (-178.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37145 (-178.1 uncal um), Max = 37159 (-178.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:49:31.838 -07 000000382 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37149, posNoise = 10, negNoise = 4
17-03-17 20:49:31.838 -07 000000382 INF: Z Motor: After move to -0.178961, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:49:31.838 -07 000000382 INF: Z Motor: Settle wait time = 2290 ms, measure time = 112 ms (allowed 150 ms), total time = 2402 ms
17-03-17 20:49:31.838 -07 000000382 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 20:49:31.878 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2447 ms
17-03-17 20:49:31.878 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:49:31.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:49:31.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:49:31.878 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:49:31.878 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:49:31.878 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:49:31.878 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:49:31.878 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:49:31.878 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:49:31.888 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:49:31.888 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:49:31.898 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 20:49:31.898 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 20:49:31.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:49:31.938 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:49:32.138 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:49:32.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:49:32.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:49:32.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 20:49:32.188 -07 000000626 INF: FPGA: Recv @CAMSNAP 282
17-03-17 20:49:32.188 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:49:32.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 287 ms overall
17-03-17 20:49:32.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:49:32.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:32.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:49:32.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:49:32.288 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:49:32.288 -07 000000448 INF: Autofocus start
17-03-17 20:49:32.288 -07 000000448 INF: MeasureProfile start
17-03-17 20:49:32.288 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:49:32.298 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:49:32.298 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:49:32.298 -07 000000448 INF: MeasureProfile done
17-03-17 20:49:32.298 -07 000000448 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:49:32.298 -07 000000448 INF: Autofocus finished
17-03-17 20:49:32.498 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:49:32.498 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:49:32.498 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.178976408865413. ----------
17-03-17 20:49:32.498 -07 000000610 INF: Cycle	43	Tile	2	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:49:32.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37609, sync = True, waitForSettling = True)
17-03-17 20:49:32.508 -07 000000610 INF: Z Motor: Moving to -0.172163 mm, started at -0.178976 mm, distance = 6.81 um
17-03-17 20:49:32.508 -07 000000610 INF: FPGA: Xmit ZDACW 37609\n [Z Motor]
17-03-17 20:49:32.508 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:49:32.518 -07 000000610 INF: FPGA: 'ZDACW 37609' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:49:32.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:49:32.518 -07 000000626 INF: FPGA: Recv ZDACR 37609
17-03-17 20:49:32.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:32.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:49:32.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:32.678 -07 000000448 INF: FPGA: Recv ZSGSRD 36086
17-03-17 20:49:32.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:49:32.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:32.688 -07 000000626 INF: FPGA: Recv ZSGSRD 36089
17-03-17 20:49:32.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:32.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:32.698 -07 000000626 INF: FPGA: Recv ZSGSRD 36092
17-03-17 20:49:32.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:32.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:32.708 -07 000000448 INF: FPGA: Recv ZSGSRD 36089
17-03-17 20:49:32.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:32.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:32.718 -07 000000626 INF: FPGA: Recv ZSGSRD 36089
17-03-17 20:49:32.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:32.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:32.728 -07 000000626 INF: FPGA: Recv ZSGSRD 36088
17-03-17 20:49:32.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:32.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:32.738 -07 000000448 INF: FPGA: Recv ZSGSRD 36092
17-03-17 20:49:32.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:32.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:32.758 -07 000000433 INF: FPGA: Recv ZSGSRD 36090
17-03-17 20:49:32.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:49:32.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:32.768 -07 000000459 INF: FPGA: Recv ZSGSRD 36088
17-03-17 20:49:32.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:32.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:32.778 -07 000000433 INF: FPGA: Recv ZSGSRD 36090
17-03-17 20:49:32.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:32.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:49:32.788 -07 000000459 INF: FPGA: Recv ZPIEZORD 32213
17-03-17 20:49:32.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:32.798 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.739 V. Piezo Error = -8.6 V.
17-03-17 20:49:32.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36089 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36089 (-171.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36086 (-171.3 uncal um), Max = 36092 (-171.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:49:32.798 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36089, posNoise = 3, negNoise = 3
17-03-17 20:49:32.798 -07 000000610 INF: Z Motor: After move to -0.172163, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:49:32.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 20:49:32.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:49:32.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:49:32.798 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:49:32.798 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:49:32.798 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:49:32.798 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:49:32.798 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:49:32.798 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:49:32.798 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:49:32.798 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:49:32.798 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:49:32.798 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:49:32.808 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:49:32.808 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:49:32.808 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:49:32.808 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:49:32.818 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:49:32.818 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:49:32.818 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:49:32.818 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:49:32.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37786 150\n [Camera]
17-03-17 20:49:33.018 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:49:33.068 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.971733,
17-03-17 20:49:33.448 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:49:33.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:49:33.448 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:49:33.448 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:49:33.448 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 20:49:33.448 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:49:33.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:49:33.448 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:49:33.448 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:49:33.448 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:49:33.638 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37786 806
17-03-17 20:49:33.788 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:49:33.848 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:49:33.848 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:49:33.848 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:33.848 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:49:33.848 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:49:33.848 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:33.848 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:49:33.848 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:49:33.858 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:49:33.858 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:49:33.988 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:49:33.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:49:33.988 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:49:34.118 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:49:34.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:49:34.118 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:49:34.128 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:49:34.128 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:49:34.128 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:49:34.128 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:49:34.178 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-17 20:49:34.188 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:49:34.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37786 150' command took 2 ms to send, 1350 ms to get response, and 1360 ms overall
17-03-17 20:49:34.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:49:34.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.172166743995146. ------
17-03-17 20:49:34.188 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:49:34.188 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17854 mm
17-03-17 20:49:34.188 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:49:34.188 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:49:34.198 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:49:34.198 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:49:34.198 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:49:34.198 -07 000000458 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 20:49:34.198 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 39003, sync = True, waitForSettling = False)
17-03-17 20:49:34.198 -07 000000502 INF: Z Motor: Moving to -0.178544 mm, started at -0.172167 mm, distance = -6.38 um
17-03-17 20:49:34.208 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:34.208 -07 000000462 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:49:34.218 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:49:34.218 -07 000000458 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:34.218 -07 000000458 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:49:34.218 -07 000000458 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:49:34.218 -07 000000502 INF: FPGA: Xmit ZDACW 39003\n [Z Motor]
17-03-17 20:49:34.218 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:49:34.228 -07 000000502 INF: FPGA: 'ZDACW 39003' command took 1 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:49:34.228 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:49:34.238 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:49:34.238 -07 000000541 INF: FPGA: Recv ZDACR 39003
17-03-17 20:49:34.248 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:49:34.248 -07 000000502 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 20:49:34.398 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:49:34.398 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:49:34.518 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:49:34.518 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:49:34.518 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:34.528 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:49:34.528 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:49:34.528 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:34.528 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:49:34.528 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 535 ms.
17-03-17 20:49:34.528 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:49:34.538 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 20:49:34.608 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 20:49:34.608 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 20:49:34.638 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:34.648 -07 000000415 INF: FPGA: Recv YRDPOS 126082
17-03-17 20:49:34.648 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:49:34.648 -07 000000458 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:34.648 -07 000000458 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:49:34.648 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.839 mm, average velocity = 2.152 mm/sec
17-03-17 20:49:35.598 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:35.598 -07 000000448 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:49:35.608 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:49:35.608 -07 000000458 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:35.638 -07 000000458 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:49:35.638 -07 000000458 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:49:35.638 -07 000000458 INF: Y Motor: Moved to 61.5640 after 1446 ms (table move)
17-03-17 20:49:35.648 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178544 mm (DAC = 39003)
17-03-17 20:49:35.648 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:35.648 -07 000000429 INF: FPGA: Recv ZSGSRD 37093
17-03-17 20:49:35.658 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:35.658 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:35.658 -07 000000541 INF: FPGA: Recv ZSGSRD 37088
17-03-17 20:49:35.668 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:35.668 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:35.668 -07 000000462 INF: FPGA: Recv ZSGSRD 37076
17-03-17 20:49:35.678 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:35.678 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:35.678 -07 000000541 INF: FPGA: Recv ZSGSRD 37077
17-03-17 20:49:35.688 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:35.688 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:35.688 -07 000000448 INF: FPGA: Recv ZSGSRD 37080
17-03-17 20:49:35.698 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:35.698 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:35.698 -07 000000462 INF: FPGA: Recv ZSGSRD 37081
17-03-17 20:49:35.708 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:35.708 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:35.708 -07 000000448 INF: FPGA: Recv ZSGSRD 37089
17-03-17 20:49:35.718 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:35.718 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:35.718 -07 000000502 INF: FPGA: Recv ZSGSRD 37086
17-03-17 20:49:35.728 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:35.728 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:35.728 -07 000000541 INF: FPGA: Recv ZSGSRD 37083
17-03-17 20:49:35.738 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:35.738 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:35.738 -07 000000458 INF: FPGA: Recv ZSGSRD 37086
17-03-17 20:49:35.748 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:35.748 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:49:35.748 -07 000000541 INF: FPGA: Recv ZPIEZORD 33530
17-03-17 20:49:35.758 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:35.758 -07 000000382 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.951 V. Piezo Error = -7.9 V.
17-03-17 20:49:35.758 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37084 (-177.7 uncal um), Error = 0.9 uncal um, Median = 37084 (-177.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 37076 (-177.6 uncal um), Max = 37093 (-177.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:49:35.758 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37084, posNoise = 9, negNoise = 8
17-03-17 20:49:35.758 -07 000000382 INF: Z Motor: After move to -0.178544, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:49:35.758 -07 000000382 INF: Z Motor: Settle wait time = 1449 ms, measure time = 109 ms (allowed 150 ms), total time = 1558 ms
17-03-17 20:49:35.758 -07 000000382 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 20:49:35.808 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-17 20:49:35.808 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:49:35.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:49:35.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:49:35.808 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:49:35.808 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:49:35.808 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:49:35.808 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:49:35.808 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:49:35.808 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:49:35.818 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:49:35.818 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:49:35.828 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:49:35.828 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:49:35.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:49:35.878 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:49:36.078 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:49:36.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:49:36.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:49:36.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 20:49:36.118 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:49:36.118 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 20:49:36.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 20:49:36.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:49:36.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:36.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:49:36.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:49:36.218 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:49:36.218 -07 000000382 INF: Autofocus start
17-03-17 20:49:36.218 -07 000000382 INF: MeasureProfile start
17-03-17 20:49:36.218 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:49:36.228 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:49:36.228 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:49:36.228 -07 000000382 INF: MeasureProfile done
17-03-17 20:49:36.228 -07 000000382 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:49:36.228 -07 000000382 INF: Autofocus finished
17-03-17 20:49:36.428 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:49:36.428 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:49:36.428 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178558835076198. ----------
17-03-17 20:49:36.438 -07 000000610 INF: Cycle	43	Tile	3	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:49:36.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37517, sync = True, waitForSettling = True)
17-03-17 20:49:36.438 -07 000000610 INF: Z Motor: Moving to -0.171742 mm, started at -0.178559 mm, distance = 6.82 um
17-03-17 20:49:36.438 -07 000000610 INF: FPGA: Xmit ZDACW 37517\n [Z Motor]
17-03-17 20:49:36.438 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:49:36.448 -07 000000610 INF: FPGA: 'ZDACW 37517' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:49:36.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:49:36.448 -07 000000626 INF: FPGA: Recv ZDACR 37517
17-03-17 20:49:36.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:36.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:49:36.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:36.608 -07 000000541 INF: FPGA: Recv ZSGSRD 36027
17-03-17 20:49:36.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:49:36.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:36.618 -07 000000448 INF: FPGA: Recv ZSGSRD 36024
17-03-17 20:49:36.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:36.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:36.628 -07 000000382 INF: FPGA: Recv ZSGSRD 36028
17-03-17 20:49:36.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:36.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:36.638 -07 000000501 INF: FPGA: Recv ZSGSRD 36015
17-03-17 20:49:36.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:36.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:36.648 -07 000000608 INF: FPGA: Recv ZSGSRD 36026
17-03-17 20:49:36.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:36.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:36.658 -07 000000448 INF: FPGA: Recv ZSGSRD 36029
17-03-17 20:49:36.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:36.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:36.668 -07 000000429 INF: FPGA: Recv ZSGSRD 36020
17-03-17 20:49:36.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:36.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:36.678 -07 000000541 INF: FPGA: Recv ZSGSRD 36027
17-03-17 20:49:36.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:36.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:36.688 -07 000000608 INF: FPGA: Recv ZSGSRD 36021
17-03-17 20:49:36.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:36.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:36.698 -07 000000458 INF: FPGA: Recv ZSGSRD 36025
17-03-17 20:49:36.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:36.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:49:36.708 -07 000000433 INF: FPGA: Recv ZPIEZORD 32077
17-03-17 20:49:36.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:36.718 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.725 V. Piezo Error = -8.7 V.
17-03-17 20:49:36.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36024 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36026 (-170.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36015 (-170.8 uncal um), Max = 36029 (-170.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:49:36.718 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36024, posNoise = 5, negNoise = 9
17-03-17 20:49:36.718 -07 000000610 INF: Z Motor: After move to -0.171742, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:49:36.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:49:36.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:49:36.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:49:36.718 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:49:36.718 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:49:36.718 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:49:36.718 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:49:36.718 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:49:36.718 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:49:36.718 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:49:36.718 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:49:36.718 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:49:36.718 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:49:36.728 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:49:36.728 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:49:36.728 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:49:36.728 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:49:36.738 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:49:36.738 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:49:36.738 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:49:36.738 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:49:36.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37694 150\n [Camera]
17-03-17 20:49:36.818 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:49:36.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:49:36.938 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:49:37.368 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:49:37.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:49:37.368 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:49:37.368 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:49:37.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:49:37.368 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:49:37.478 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:49:37.478 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1057034288, 0x0, 391868352) start.
17-03-17 20:49:37.478 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:49:37.478 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:49:37.558 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37694 807
17-03-17 20:49:37.708 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:49:37.868 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:49:37.868 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:49:37.868 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:37.868 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1057034288, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:49:37.868 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:49:37.868 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:37.868 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:49:37.868 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:49:37.868 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-17 20:49:37.878 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 510 ms.
17-03-17 20:49:37.908 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:49:37.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:49:37.908 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:49:37.908 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:49:37.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:49:37.918 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:49:37.918 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:49:37.918 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:49:37.918 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:49:37.918 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1456144144, 0x0, 418435064) start.
17-03-17 20:49:38.098 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:49:38.098 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:49:38.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37694 150' command took 2 ms to send, 1347 ms to get response, and 1357 ms overall
17-03-17 20:49:38.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:49:38.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.171749170205932. ------
17-03-17 20:49:38.108 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17795 mm
17-03-17 20:49:38.108 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:49:38.108 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:49:38.108 -07 000000448 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 20:49:38.108 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38874, sync = True, waitForSettling = False)
17-03-17 20:49:38.108 -07 000000608 INF: Z Motor: Moving to -0.177954 mm, started at -0.171749 mm, distance = -6.20 um
17-03-17 20:49:38.118 -07 000000608 INF: FPGA: Xmit ZDACW 38874\n [Z Motor]
17-03-17 20:49:38.118 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:49:38.128 -07 000000608 INF: FPGA: 'ZDACW 38874' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:49:38.128 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:49:38.128 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:49:38.138 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:38.138 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:49:38.138 -07 000000415 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:49:38.148 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:49:38.148 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 20:49:38.148 -07 000000448 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:38.148 -07 000000448 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:49:38.148 -07 000000448 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:49:38.148 -07 000000429 INF: FPGA: Recv ZDACR 38874
17-03-17 20:49:38.158 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:49:38.158 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:49:38.158 -07 000000608 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 20:49:38.168 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:49:38.318 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:49:38.318 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:49:38.318 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:38.318 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1456144144, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:49:38.318 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:49:38.318 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:38.318 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:49:38.318 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:49:38.318 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:49:38.328 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:49:38.358 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:49:38.358 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:49:38.428 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.005817,
17-03-17 20:49:38.538 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:49:38.538 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:49:38.578 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:38.578 -07 000000429 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:49:38.588 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:49:38.588 -07 000000448 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:38.588 -07 000000448 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:49:38.588 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec
17-03-17 20:49:39.538 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:39.538 -07 000000415 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:49:39.548 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:49:39.548 -07 000000448 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:39.568 -07 000000448 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:49:39.568 -07 000000448 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:49:39.568 -07 000000448 INF: Y Motor: Moved to 62.3955 after 1453 ms (table move)
17-03-17 20:49:39.568 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177954 mm (DAC = 38874)
17-03-17 20:49:39.568 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:39.568 -07 000000415 INF: FPGA: Recv ZSGSRD 36993
17-03-17 20:49:39.578 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:49:39.578 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:39.578 -07 000000433 INF: FPGA: Recv ZSGSRD 36988
17-03-17 20:49:39.588 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:39.588 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:39.588 -07 000000415 INF: FPGA: Recv ZSGSRD 36992
17-03-17 20:49:39.598 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:39.598 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:39.598 -07 000000448 INF: FPGA: Recv ZSGSRD 36996
17-03-17 20:49:39.608 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:39.608 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:39.608 -07 000000459 INF: FPGA: Recv ZSGSRD 36996
17-03-17 20:49:39.618 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:39.618 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:39.618 -07 000000448 INF: FPGA: Recv ZSGSRD 36992
17-03-17 20:49:39.628 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:39.628 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:39.628 -07 000000382 INF: FPGA: Recv ZSGSRD 36992
17-03-17 20:49:39.638 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:39.638 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:39.638 -07 000000429 INF: FPGA: Recv ZSGSRD 36987
17-03-17 20:49:39.648 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:39.648 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:39.648 -07 000000576 INF: FPGA: Recv ZSGSRD 36989
17-03-17 20:49:39.658 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:39.658 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:39.658 -07 000000576 INF: FPGA: Recv ZSGSRD 36988
17-03-17 20:49:39.668 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:49:39.668 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:49:39.668 -07 000000459 INF: FPGA: Recv ZPIEZORD 33398
17-03-17 20:49:39.678 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:39.678 -07 000000541 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.932 V. Piezo Error = -8.0 V.
17-03-17 20:49:39.678 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 36991 (-177.1 uncal um), Error = 0.9 uncal um, Median = 36992 (-177.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36987 (-177.0 uncal um), Max = 36996 (-177.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:49:39.678 -07 000000541 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36991, posNoise = 5, negNoise = 4
17-03-17 20:49:39.678 -07 000000541 INF: Z Motor: After move to -0.177954, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:49:39.678 -07 000000541 INF: Z Motor: Settle wait time = 1456 ms, measure time = 106 ms (allowed 150 ms), total time = 1562 ms
17-03-17 20:49:39.678 -07 000000541 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:49:39.728 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-17 20:49:39.728 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:49:39.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:49:39.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:49:39.728 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:49:39.728 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:49:39.728 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:49:39.728 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:49:39.728 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:49:39.728 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:49:39.738 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:49:39.738 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:49:39.748 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:49:39.748 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:49:39.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:49:39.798 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:49:39.998 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:49:39.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:49:39.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:49:39.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start.
17-03-17 20:49:40.038 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:49:40.038 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 20:49:40.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 287 ms overall
17-03-17 20:49:40.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:49:40.128 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:40.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:49:40.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:49:40.138 -07 000000448 INF: Autofocus start
17-03-17 20:49:40.138 -07 000000448 INF: MeasureProfile start
17-03-17 20:49:40.138 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:49:40.138 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:49:40.148 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 7 ms overall
17-03-17 20:49:40.148 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:49:40.148 -07 000000448 INF: MeasureProfile done
17-03-17 20:49:40.148 -07 000000448 INF: X=-32  Z correction [um]=-0.2344
17-03-17 20:49:40.148 -07 000000448 INF: Autofocus finished
17-03-17 20:49:40.348 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:49:40.348 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:49:40.348 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.177961383347014. ----------
17-03-17 20:49:40.348 -07 000000610 INF: Cycle	43	Tile	4	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:49:40.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37335, sync = True, waitForSettling = True)
17-03-17 20:49:40.358 -07 000000610 INF: Z Motor: Moving to -0.170909 mm, started at -0.177961 mm, distance = 7.05 um
17-03-17 20:49:40.358 -07 000000610 INF: FPGA: Xmit ZDACW 37335\n [Z Motor]
17-03-17 20:49:40.358 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:49:40.368 -07 000000610 INF: FPGA: 'ZDACW 37335' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:49:40.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:49:40.368 -07 000000429 INF: FPGA: Recv ZDACR 37335
17-03-17 20:49:40.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:40.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:49:40.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:40.528 -07 000000429 INF: FPGA: Recv ZSGSRD 35894
17-03-17 20:49:40.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:40.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:40.538 -07 000000448 INF: FPGA: Recv ZSGSRD 35892
17-03-17 20:49:40.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:40.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:40.548 -07 000000576 INF: FPGA: Recv ZSGSRD 35895
17-03-17 20:49:40.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:40.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:40.558 -07 000000608 INF: FPGA: Recv ZSGSRD 35891
17-03-17 20:49:40.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:40.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:40.568 -07 000000541 INF: FPGA: Recv ZSGSRD 35894
17-03-17 20:49:40.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:40.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:40.578 -07 000000608 INF: FPGA: Recv ZSGSRD 35893
17-03-17 20:49:40.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:40.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:40.588 -07 000000541 INF: FPGA: Recv ZSGSRD 35893
17-03-17 20:49:40.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:40.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:40.598 -07 000000608 INF: FPGA: Recv ZSGSRD 35895
17-03-17 20:49:40.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:40.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:40.608 -07 000000541 INF: FPGA: Recv ZSGSRD 35894
17-03-17 20:49:40.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:40.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:40.618 -07 000000448 INF: FPGA: Recv ZSGSRD 35895
17-03-17 20:49:40.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:40.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:49:40.628 -07 000000541 INF: FPGA: Recv ZPIEZORD 31943
17-03-17 20:49:40.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:40.638 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.697 V. Piezo Error = -8.7 V.
17-03-17 20:49:40.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35894 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35894 (-170.0 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35891 (-170.0 uncal um), Max = 35895 (-170.0 uncal um), Pos Noise = 1 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:49:40.638 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35894, posNoise = 1, negNoise = 3
17-03-17 20:49:40.638 -07 000000610 INF: Z Motor: After move to -0.170909, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:49:40.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:49:40.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:49:40.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:49:40.638 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:49:40.638 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:49:40.638 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:49:40.638 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:49:40.638 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:49:40.638 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:49:40.638 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:49:40.638 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:49:40.638 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:49:40.638 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:49:40.638 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:49:40.638 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:49:40.638 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:49:40.638 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:49:40.648 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:49:40.648 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:49:40.658 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:49:40.658 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:49:40.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37512 150\n [Camera]
17-03-17 20:49:40.858 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 20:49:41.278 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:49:41.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:49:41.278 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:49:41.278 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:49:41.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:49:41.278 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:49:41.288 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:49:41.288 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:49:41.288 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:49:41.288 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1092456552, 0x0, 391868352) start.
17-03-17 20:49:41.468 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37512 806
17-03-17 20:49:41.618 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:49:41.658 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:49:41.658 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:49:41.658 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:41.668 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:49:41.668 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1092456552, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:49:41.668 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:49:41.668 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:41.668 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:49:41.668 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:49:41.668 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:49:41.818 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:49:41.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:49:41.818 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:49:41.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:49:41.818 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:49:41.828 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:49:41.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:49:41.828 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:49:41.828 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:49:41.828 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1144753880, 0x0, 418435064) start.
17-03-17 20:49:41.828 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:49:41.828 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:49:42.008 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:49:42.018 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:49:42.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37512 150' command took 2 ms to send, 1350 ms to get response, and 1357 ms overall
17-03-17 20:49:42.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:49:42.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.170914022627503. ------
17-03-17 20:49:42.028 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:49:42.028 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17744 mm
17-03-17 20:49:42.028 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:49:42.028 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:49:42.028 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38763, sync = True, waitForSettling = False)
17-03-17 20:49:42.028 -07 000000459 INF: Z Motor: Moving to -0.177446 mm, started at -0.170914 mm, distance = -6.53 um
17-03-17 20:49:42.028 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:49:42.028 -07 000000608 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 20:49:42.038 -07 000000459 INF: FPGA: Xmit ZDACW 38763\n [Z Motor]
17-03-17 20:49:42.038 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:42.038 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:49:42.048 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:42.048 -07 000000459 INF: FPGA: 'ZDACW 38763' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:49:42.048 -07 000000433 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:49:42.058 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:49:42.058 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:49:42.058 -07 000000608 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:42.058 -07 000000608 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:49:42.058 -07 000000608 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:49:42.068 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:49:42.068 -07 000000501 INF: FPGA: Recv ZDACR 38763
17-03-17 20:49:42.078 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:49:42.078 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:49:42.078 -07 000000459 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 20:49:42.208 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1144753880, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 20:49:42.208 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:49:42.208 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:42.208 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:49:42.208 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:49:42.208 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:42.208 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:49:42.218 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:49:42.218 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:49:42.218 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:49:42.258 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:49:42.258 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:49:42.448 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:49:42.448 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 20:49:42.488 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:42.488 -07 000000462 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:49:42.498 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:49:42.498 -07 000000608 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:42.498 -07 000000608 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:49:42.498 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-17 20:49:43.448 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:43.448 -07 000000462 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:49:43.458 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:43.458 -07 000000608 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:43.478 -07 000000608 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:49:43.478 -07 000000608 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:49:43.478 -07 000000608 INF: Y Motor: Moved to 63.2241 after 1451 ms (table move)
17-03-17 20:49:43.478 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177446 mm (DAC = 38763)
17-03-17 20:49:43.478 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:43.488 -07 000000462 INF: FPGA: Recv ZSGSRD 36908
17-03-17 20:49:43.488 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 20:49:43.488 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:43.488 -07 000000502 INF: FPGA: Recv ZSGSRD 36915
17-03-17 20:49:43.498 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:49:43.498 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:43.498 -07 000000608 INF: FPGA: Recv ZSGSRD 36909
17-03-17 20:49:43.508 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:43.508 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:43.508 -07 000000433 INF: FPGA: Recv ZSGSRD 36912
17-03-17 20:49:43.518 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:43.518 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:43.518 -07 000000502 INF: FPGA: Recv ZSGSRD 36918
17-03-17 20:49:43.528 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:43.528 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:43.528 -07 000000462 INF: FPGA: Recv ZSGSRD 36918
17-03-17 20:49:43.538 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:43.538 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:43.538 -07 000000502 INF: FPGA: Recv ZSGSRD 36917
17-03-17 20:49:43.548 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:43.548 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:43.548 -07 000000462 INF: FPGA: Recv ZSGSRD 36912
17-03-17 20:49:43.558 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:43.558 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:43.558 -07 000000502 INF: FPGA: Recv ZSGSRD 36912
17-03-17 20:49:43.568 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:43.568 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:43.568 -07 000000608 INF: FPGA: Recv ZSGSRD 36907
17-03-17 20:49:43.578 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:43.578 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:49:43.578 -07 000000415 INF: FPGA: Recv ZPIEZORD 33290
17-03-17 20:49:43.588 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:43.588 -07 000000448 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.915 V. Piezo Error = -8.0 V.
17-03-17 20:49:43.588 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36913 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36912 (-176.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36907 (-176.5 uncal um), Max = 36918 (-176.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:49:43.588 -07 000000448 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36913, posNoise = 5, negNoise = 6
17-03-17 20:49:43.588 -07 000000448 INF: Z Motor: After move to -0.177446, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:49:43.588 -07 000000448 INF: Z Motor: Settle wait time = 1454 ms, measure time = 102 ms (allowed 150 ms), total time = 1556 ms
17-03-17 20:49:43.588 -07 000000448 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:49:43.638 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 20:49:43.638 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:49:43.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:49:43.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:49:43.638 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:49:43.638 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:49:43.638 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:49:43.638 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:49:43.648 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:49:43.648 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:49:43.648 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:49:43.648 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:49:43.658 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:49:43.658 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:49:43.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:49:43.708 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:49:43.788 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.996267,
17-03-17 20:49:43.908 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:49:43.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:49:43.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:49:43.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start.
17-03-17 20:49:43.948 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:49:43.948 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 20:49:43.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:49:44.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:49:44.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:44.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:49:44.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:49:44.048 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:49:44.048 -07 000000429 INF: Autofocus start
17-03-17 20:49:44.048 -07 000000429 INF: MeasureProfile start
17-03-17 20:49:44.048 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:49:44.058 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:49:44.058 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:49:44.068 -07 000000429 INF: MeasureProfile done
17-03-17 20:49:44.068 -07 000000429 INF: X=64  Z correction [um]=0.2557664
17-03-17 20:49:44.068 -07 000000429 INF: Autofocus finished
17-03-17 20:49:44.258 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:49:44.258 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 20:49:44.258 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.177460294799957. ----------
17-03-17 20:49:44.258 -07 000000610 INF: Cycle	43	Tile	5	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:49:44.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37331, sync = True, waitForSettling = True)
17-03-17 20:49:44.268 -07 000000610 INF: Z Motor: Moving to -0.170890 mm, started at -0.177460 mm, distance = 6.57 um
17-03-17 20:49:44.268 -07 000000610 INF: FPGA: Xmit ZDACW 37331\n [Z Motor]
17-03-17 20:49:44.268 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:49:44.278 -07 000000610 INF: FPGA: 'ZDACW 37331' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:49:44.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:49:44.278 -07 000000462 INF: FPGA: Recv ZDACR 37331
17-03-17 20:49:44.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:44.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:49:44.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:44.438 -07 000000501 INF: FPGA: Recv ZSGSRD 35893
17-03-17 20:49:44.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:49:44.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:44.448 -07 000000429 INF: FPGA: Recv ZSGSRD 35894
17-03-17 20:49:44.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:44.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:44.458 -07 000000433 INF: FPGA: Recv ZSGSRD 35892
17-03-17 20:49:44.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:44.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:44.468 -07 000000462 INF: FPGA: Recv ZSGSRD 35890
17-03-17 20:49:44.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:44.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:44.478 -07 000000501 INF: FPGA: Recv ZSGSRD 35894
17-03-17 20:49:44.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:44.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:44.488 -07 000000429 INF: FPGA: Recv ZSGSRD 35898
17-03-17 20:49:44.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:44.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:44.498 -07 000000502 INF: FPGA: Recv ZSGSRD 35892
17-03-17 20:49:44.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:44.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:44.508 -07 000000415 INF: FPGA: Recv ZSGSRD 35887
17-03-17 20:49:44.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:44.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:44.518 -07 000000433 INF: FPGA: Recv ZSGSRD 35891
17-03-17 20:49:44.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:44.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:44.528 -07 000000462 INF: FPGA: Recv ZSGSRD 35889
17-03-17 20:49:44.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:44.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:49:44.538 -07 000000448 INF: FPGA: Recv ZPIEZORD 31941
17-03-17 20:49:44.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:49:44.548 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.696 V. Piezo Error = -8.7 V.
17-03-17 20:49:44.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35892 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35892 (-170.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35887 (-170.0 uncal um), Max = 35898 (-170.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:49:44.548 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35892, posNoise = 6, negNoise = 5
17-03-17 20:49:44.548 -07 000000610 INF: Z Motor: After move to -0.170890, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:49:44.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:49:44.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:49:44.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:49:44.548 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:49:44.548 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:49:44.548 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:49:44.548 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:49:44.548 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:49:44.548 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:49:44.548 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:49:44.548 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:49:44.548 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:49:44.548 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:49:44.558 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:49:44.558 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:49:44.558 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:49:44.558 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:49:44.568 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:49:44.568 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:49:44.568 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 20:49:44.568 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:49:44.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37508 150\n [Camera]
17-03-17 20:49:44.768 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:49:45.188 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:49:45.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:49:45.198 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:49:45.198 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:49:45.198 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 20:49:45.198 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:49:45.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:49:45.198 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:49:45.198 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:49:45.198 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:49:45.388 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37508 806
17-03-17 20:49:45.538 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:49:45.568 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:49:45.568 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:49:45.568 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:45.568 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:49:45.568 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:49:45.568 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:45.578 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:49:45.578 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:49:45.578 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:49:45.588 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:49:45.738 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:49:45.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:49:45.738 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:49:45.738 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:49:45.738 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:49:45.738 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:49:45.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:49:45.738 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:49:45.738 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:49:45.738 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:49:45.928 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-17 20:49:45.928 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:49:45.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37508 150' command took 5 ms to send, 1345 ms to get response, and 1357 ms overall
17-03-17 20:49:45.928 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:49:45.928 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170901174203219. ------
17-03-17 20:49:46.058 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:49:46.058 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17745 mm
17-03-17 20:49:46.058 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:49:46.058 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:49:46.058 -07 000000429 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 20:49:46.058 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38765, sync = True, waitForSettling = False)
17-03-17 20:49:46.058 -07 000000626 INF: Z Motor: Moving to -0.177455 mm, started at -0.170901 mm, distance = -6.55 um
17-03-17 20:49:46.058 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:49:46.068 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:46.068 -07 000000626 INF: FPGA: Xmit ZDACW 38765\n [Z Motor]
17-03-17 20:49:46.068 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:49:46.078 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:46.078 -07 000000626 INF: FPGA: 'ZDACW 38765' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:49:46.078 -07 000000502 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:49:46.088 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:49:46.088 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:49:46.088 -07 000000429 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:46.088 -07 000000429 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:49:46.088 -07 000000429 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:49:46.098 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:49:46.098 -07 000000462 INF: FPGA: Recv ZDACR 38765
17-03-17 20:49:46.108 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:49:46.108 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:49:46.108 -07 000000626 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 20:49:46.128 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:49:46.128 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:49:46.128 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:46.128 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:49:46.128 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:49:46.128 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:46.128 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:49:46.128 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:49:46.128 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:49:46.138 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:49:46.288 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:49:46.288 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-17 20:49:46.478 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 20:49:46.478 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:49:46.518 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:46.518 -07 000000458 INF: FPGA: Recv YRDPOS 131188
17-03-17 20:49:46.528 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:49:46.528 -07 000000429 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:46.528 -07 000000429 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 20:49:46.528 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.838 mm, average velocity = 2.123 mm/sec
17-03-17 20:49:46.818 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:49:46.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:49:47.478 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:47.478 -07 000000415 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:49:47.488 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:47.488 -07 000000429 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:47.508 -07 000000429 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:49:47.508 -07 000000429 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:49:47.508 -07 000000429 INF: Y Motor: Moved to 64.0571 after 1446 ms (table move)
17-03-17 20:49:47.508 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177455 mm (DAC = 38765)
17-03-17 20:49:47.508 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:47.508 -07 000000502 INF: FPGA: Recv ZSGSRD 36917
17-03-17 20:49:47.518 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:49:47.518 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:47.518 -07 000000502 INF: FPGA: Recv ZSGSRD 36915
17-03-17 20:49:47.528 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:47.528 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:47.528 -07 000000608 INF: FPGA: Recv ZSGSRD 36923
17-03-17 20:49:47.538 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:47.538 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:47.538 -07 000000501 INF: FPGA: Recv ZSGSRD 36914
17-03-17 20:49:47.548 -07 000000576 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:47.548 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:47.548 -07 000000608 INF: FPGA: Recv ZSGSRD 36914
17-03-17 20:49:47.558 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:47.558 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:47.558 -07 000000626 INF: FPGA: Recv ZSGSRD 36915
17-03-17 20:49:47.568 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:47.568 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:47.568 -07 000000415 INF: FPGA: Recv ZSGSRD 36910
17-03-17 20:49:47.578 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:47.578 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:47.578 -07 000000415 INF: FPGA: Recv ZSGSRD 36916
17-03-17 20:49:47.588 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:47.588 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:47.588 -07 000000415 INF: FPGA: Recv ZSGSRD 36905
17-03-17 20:49:47.598 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:47.608 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:47.608 -07 000000448 INF: FPGA: Recv ZSGSRD 36917
17-03-17 20:49:47.618 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:49:47.618 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:49:47.618 -07 000000448 INF: FPGA: Recv ZPIEZORD 33328
17-03-17 20:49:47.628 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:47.628 -07 000000576 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.915 V. Piezo Error = -8.0 V.
17-03-17 20:49:47.628 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36915 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36915 (-176.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36905 (-176.5 uncal um), Max = 36923 (-176.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:49:47.628 -07 000000576 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36915, posNoise = 8, negNoise = 10
17-03-17 20:49:47.628 -07 000000576 INF: Z Motor: After move to -0.177455, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:49:47.628 -07 000000576 INF: Z Motor: Settle wait time = 1449 ms, measure time = 117 ms (allowed 150 ms), total time = 1566 ms
17-03-17 20:49:47.628 -07 000000576 INF: Z Motor: Waiting extra 33 ms after reading position to reach expected total of 150 ms
17-03-17 20:49:47.668 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 20:49:47.668 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:49:47.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:49:47.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:49:47.668 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:49:47.668 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:49:47.668 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:49:47.668 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:49:47.668 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:49:47.668 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:49:47.678 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:49:47.678 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:49:47.678 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:49:47.678 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:49:47.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:49:47.728 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:49:47.928 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:49:47.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:49:47.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:49:47.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:49:47.968 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:49:47.968 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 20:49:47.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:49:48.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:49:48.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:48.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:49:48.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:49:48.068 -07 000000448 INF: Autofocus start
17-03-17 20:49:48.068 -07 000000448 INF: MeasureProfile start
17-03-17 20:49:48.068 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:49:48.068 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:49:48.078 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:49:48.078 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:49:48.078 -07 000000448 INF: MeasureProfile done
17-03-17 20:49:48.078 -07 000000448 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 20:49:48.078 -07 000000448 INF: Autofocus finished
17-03-17 20:49:48.278 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:49:48.278 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:49:48.278 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.177473143224241. ----------
17-03-17 20:49:48.278 -07 000000610 INF: Cycle	43	Tile	6	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:49:48.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37245, sync = True, waitForSettling = True)
17-03-17 20:49:48.288 -07 000000610 INF: Z Motor: Moving to -0.170497 mm, started at -0.177473 mm, distance = 6.98 um
17-03-17 20:49:48.288 -07 000000610 INF: FPGA: Xmit ZDACW 37245\n [Z Motor]
17-03-17 20:49:48.288 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:49:48.298 -07 000000610 INF: FPGA: 'ZDACW 37245' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:49:48.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:49:48.298 -07 000000501 INF: FPGA: Recv ZDACR 37245
17-03-17 20:49:48.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:48.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:49:48.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:48.458 -07 000000433 INF: FPGA: Recv ZSGSRD 35826
17-03-17 20:49:48.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:49:48.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:48.468 -07 000000433 INF: FPGA: Recv ZSGSRD 35831
17-03-17 20:49:48.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:48.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:48.478 -07 000000433 INF: FPGA: Recv ZSGSRD 35832
17-03-17 20:49:48.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:48.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:48.488 -07 000000502 INF: FPGA: Recv ZSGSRD 35826
17-03-17 20:49:48.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:48.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:48.498 -07 000000433 INF: FPGA: Recv ZSGSRD 35831
17-03-17 20:49:48.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:48.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:48.508 -07 000000502 INF: FPGA: Recv ZSGSRD 35829
17-03-17 20:49:48.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:48.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:48.518 -07 000000433 INF: FPGA: Recv ZSGSRD 35831
17-03-17 20:49:48.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:48.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:48.528 -07 000000502 INF: FPGA: Recv ZSGSRD 35838
17-03-17 20:49:48.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:48.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:48.538 -07 000000462 INF: FPGA: Recv ZSGSRD 35828
17-03-17 20:49:48.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:48.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:48.548 -07 000000502 INF: FPGA: Recv ZSGSRD 35833
17-03-17 20:49:48.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:48.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:49:48.558 -07 000000501 INF: FPGA: Recv ZPIEZORD 31859
17-03-17 20:49:48.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:48.568 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.683 V. Piezo Error = -8.8 V.
17-03-17 20:49:48.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35830 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35831 (-169.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35826 (-169.6 uncal um), Max = 35838 (-169.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:49:48.568 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35830, posNoise = 8, negNoise = 4
17-03-17 20:49:48.568 -07 000000610 INF: Z Motor: After move to -0.170497, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:49:48.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:49:48.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:49:48.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:49:48.568 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:49:48.568 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:49:48.568 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:49:48.568 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:49:48.568 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:49:48.568 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:49:48.568 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:49:48.568 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:49:48.568 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:49:48.568 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:49:48.578 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:49:48.578 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:49:48.578 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:49:48.578 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:49:48.588 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:49:48.588 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:49:48.588 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:49:48.588 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:49:48.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37421 150\n [Camera]
17-03-17 20:49:48.788 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 20:49:49.148 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.994908,
17-03-17 20:49:49.208 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:49:49.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:49:49.208 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:49:49.208 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:49:49.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:49:49.208 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:49:49.218 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:49:49.218 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:49:49.218 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:49:49.218 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:49:49.398 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37421 806
17-03-17 20:49:49.548 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:49:49.598 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:49:49.598 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:49:49.598 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:49.598 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:49:49.598 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:49:49.598 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:49.598 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:49:49.598 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:49:49.598 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:49:49.608 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:49:49.758 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:49:49.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:49:49.758 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:49:49.758 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:49:49.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:49:49.758 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:49:49.758 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:49:49.758 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:49:49.768 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:49:49.768 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1057034288, 0x0, 418435064) start.
17-03-17 20:49:49.948 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:49:49.948 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:49:49.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37421 150' command took 2 ms to send, 1352 ms to get response, and 1357 ms overall
17-03-17 20:49:49.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:49:49.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.17050287305043. ------
17-03-17 20:49:49.948 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:49:49.948 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17690 mm
17-03-17 20:49:49.948 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:49:49.948 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:49:49.948 -07 000000608 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 20:49:49.958 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:49:49.958 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:49:49.958 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38644, sync = True, waitForSettling = False)
17-03-17 20:49:50.068 -07 000000415 INF: Z Motor: Moving to -0.176901 mm, started at -0.170503 mm, distance = -6.40 um
17-03-17 20:49:50.068 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:50.068 -07 000000626 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:49:50.078 -07 000000608 INF: FPGA: 'YRDPOS' command took 116 ms to send, 0 ms to get response, and 120 ms overall
17-03-17 20:49:50.078 -07 000000608 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:50.078 -07 000000608 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:49:50.078 -07 000000608 INF: Y Motor: Moving 1337 steps-12
17-03-17 20:49:50.078 -07 000000415 INF: FPGA: Xmit ZDACW 38644\n [Z Motor]
17-03-17 20:49:50.078 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:49:50.088 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:49:50.088 -07 000000415 INF: FPGA: 'ZDACW 38644' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:49:50.098 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:49:50.108 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:49:50.108 -07 000000458 INF: FPGA: Recv ZDACR 38644
17-03-17 20:49:50.118 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:49:50.118 -07 000000415 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:49:50.158 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:49:50.158 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:49:50.158 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:50.158 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1057034288, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:49:50.158 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:49:50.158 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:50.158 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:49:50.158 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:49:50.168 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:49:50.168 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:49:50.288 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:49:50.288 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 219 ms overall
17-03-17 20:49:50.468 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:49:50.468 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:49:50.508 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:50.508 -07 000000459 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:49:50.518 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:49:50.518 -07 000000608 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:50.518 -07 000000608 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:49:50.518 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 20:49:51.468 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:51.468 -07 000000448 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:49:51.478 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:49:51.478 -07 000000608 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:51.498 -07 000000608 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:49:51.498 -07 000000608 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:49:51.498 -07 000000608 INF: Y Motor: Moved to 64.8789 after 1543 ms (table move)
17-03-17 20:49:51.498 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176901 mm (DAC = 38644)
17-03-17 20:49:51.498 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:51.498 -07 000000541 INF: FPGA: Recv ZSGSRD 36824
17-03-17 20:49:51.508 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:49:51.508 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:51.508 -07 000000608 INF: FPGA: Recv ZSGSRD 36826
17-03-17 20:49:51.518 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:51.518 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:51.518 -07 000000433 INF: FPGA: Recv ZSGSRD 36815
17-03-17 20:49:51.528 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:49:51.528 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:51.528 -07 000000608 INF: FPGA: Recv ZSGSRD 36825
17-03-17 20:49:51.538 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:51.538 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:51.538 -07 000000433 INF: FPGA: Recv ZSGSRD 36838
17-03-17 20:49:51.548 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:51.548 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:51.548 -07 000000502 INF: FPGA: Recv ZSGSRD 36830
17-03-17 20:49:51.558 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:51.558 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:51.558 -07 000000541 INF: FPGA: Recv ZSGSRD 36818
17-03-17 20:49:51.568 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:51.568 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:51.568 -07 000000608 INF: FPGA: Recv ZSGSRD 36824
17-03-17 20:49:51.578 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:51.578 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:51.578 -07 000000541 INF: FPGA: Recv ZSGSRD 36821
17-03-17 20:49:51.588 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:51.588 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:51.588 -07 000000502 INF: FPGA: Recv ZSGSRD 36821
17-03-17 20:49:51.598 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:51.598 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:49:51.598 -07 000000433 INF: FPGA: Recv ZPIEZORD 33182
17-03-17 20:49:51.608 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:51.608 -07 000000462 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.897 V. Piezo Error = -8.1 V.
17-03-17 20:49:51.608 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36824 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36824 (-176.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 36815 (-175.9 uncal um), Max = 36838 (-176.1 uncal um), Pos Noise = 14 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:49:51.608 -07 000000462 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36824, posNoise = 14, negNoise = 9
17-03-17 20:49:51.608 -07 000000462 INF: Z Motor: After move to -0.176901, error = 0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:49:51.608 -07 000000462 INF: Z Motor: Settle wait time = 1430 ms, measure time = 104 ms (allowed 150 ms), total time = 1534 ms
17-03-17 20:49:51.608 -07 000000462 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:49:51.658 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1703 ms
17-03-17 20:49:51.658 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:49:51.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:49:51.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:49:51.658 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:49:51.658 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:49:51.658 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:49:51.658 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:49:51.658 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:49:51.658 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:49:51.668 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:49:51.668 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:49:51.678 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:49:51.678 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:49:51.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:49:51.728 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:49:51.818 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:49:51.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:49:51.928 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:49:51.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:49:51.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:49:51.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:49:51.968 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:49:51.968 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 20:49:51.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 20:49:52.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:49:52.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:52.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:49:52.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:49:52.068 -07 000000458 INF: Autofocus start
17-03-17 20:49:52.068 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:49:52.068 -07 000000458 INF: MeasureProfile start
17-03-17 20:49:52.068 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:49:52.078 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:49:52.078 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:49:52.078 -07 000000458 INF: MeasureProfile done
17-03-17 20:49:52.078 -07 000000458 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:49:52.078 -07 000000458 INF: Autofocus finished
17-03-17 20:49:52.278 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:49:52.278 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:49:52.278 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.17688853991934. ----------
17-03-17 20:49:52.278 -07 000000610 INF: Cycle	43	Tile	7	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:49:52.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37159, sync = True, waitForSettling = True)
17-03-17 20:49:52.288 -07 000000610 INF: Z Motor: Moving to -0.170103 mm, started at -0.176889 mm, distance = 6.79 um
17-03-17 20:49:52.288 -07 000000610 INF: FPGA: Xmit ZDACW 37159\n [Z Motor]
17-03-17 20:49:52.288 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:49:52.298 -07 000000610 INF: FPGA: 'ZDACW 37159' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:52.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:49:52.298 -07 000000459 INF: FPGA: Recv ZDACR 37159
17-03-17 20:49:52.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:52.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:49:52.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:52.458 -07 000000608 INF: FPGA: Recv ZSGSRD 35767
17-03-17 20:49:52.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:52.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:52.468 -07 000000541 INF: FPGA: Recv ZSGSRD 35774
17-03-17 20:49:52.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:52.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:52.478 -07 000000501 INF: FPGA: Recv ZSGSRD 35766
17-03-17 20:49:52.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:52.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:52.488 -07 000000626 INF: FPGA: Recv ZSGSRD 35765
17-03-17 20:49:52.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:49:52.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:52.498 -07 000000429 INF: FPGA: Recv ZSGSRD 35772
17-03-17 20:49:52.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:52.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:52.508 -07 000000433 INF: FPGA: Recv ZSGSRD 35777
17-03-17 20:49:52.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:52.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:52.518 -07 000000429 INF: FPGA: Recv ZSGSRD 35767
17-03-17 20:49:52.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:52.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:52.528 -07 000000433 INF: FPGA: Recv ZSGSRD 35765
17-03-17 20:49:52.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:52.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:52.538 -07 000000541 INF: FPGA: Recv ZSGSRD 35775
17-03-17 20:49:52.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:52.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:52.548 -07 000000433 INF: FPGA: Recv ZSGSRD 35767
17-03-17 20:49:52.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:52.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:49:52.558 -07 000000448 INF: FPGA: Recv ZPIEZORD 31769
17-03-17 20:49:52.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:52.568 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.670 V. Piezo Error = -8.8 V.
17-03-17 20:49:52.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35770 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35767 (-169.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35765 (-169.2 uncal um), Max = 35777 (-169.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:49:52.568 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35770, posNoise = 7, negNoise = 5
17-03-17 20:49:52.568 -07 000000610 INF: Z Motor: After move to -0.170103, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:49:52.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:49:52.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:49:52.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:49:52.568 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:49:52.568 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:49:52.568 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:49:52.568 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:49:52.568 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:49:52.568 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:49:52.568 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:49:52.568 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:49:52.568 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:49:52.568 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:49:52.568 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:49:52.568 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:49:52.578 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:49:52.578 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:49:52.588 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:49:52.588 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:49:52.588 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:49:52.588 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:49:52.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37335 150\n [Camera]
17-03-17 20:49:52.788 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 20:49:53.208 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:49:53.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:49:53.208 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:49:53.208 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:49:53.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:49:53.218 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:49:53.218 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:49:53.218 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:49:53.218 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:49:53.218 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:49:53.398 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37335 806
17-03-17 20:49:53.548 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:49:53.588 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 20:49:53.588 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 20:49:53.588 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:53.588 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 20:49:53.588 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 20:49:53.588 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:53.588 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:49:53.598 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:49:53.598 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:49:53.598 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:49:53.758 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:49:53.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:49:53.758 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:49:53.758 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:49:53.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:49:53.758 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:49:53.758 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:49:53.758 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1092456552, 0x0, 391868352) start.
17-03-17 20:49:53.768 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:49:53.768 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:49:53.948 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:49:53.948 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:49:53.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37335 150' command took 2 ms to send, 1354 ms to get response, and 1359 ms overall
17-03-17 20:49:53.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:49:53.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.170117420321924. ------
17-03-17 20:49:53.948 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:49:53.948 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17681 mm
17-03-17 20:49:53.948 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:49:53.958 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:49:53.958 -07 000000448 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 20:49:53.958 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:54.158 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1092456552, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:49:54.158 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:49:54.158 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:54.158 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:49:54.158 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:49:54.158 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:54.168 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:49:54.168 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:49:54.168 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:49:54.178 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:49:54.178 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38624, sync = True, waitForSettling = False)
17-03-17 20:49:54.178 -07 000000433 INF: Z Motor: Moving to -0.176809 mm, started at -0.170117 mm, distance = -6.69 um
17-03-17 20:49:54.178 -07 000000433 INF: FPGA: Xmit ZDACW 38624\n [Z Motor]
17-03-17 20:49:54.188 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:49:54.188 -07 000000458 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:49:54.188 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 230 ms to get response, and 231 ms overall
17-03-17 20:49:54.188 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:49:54.188 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 220 ms to get response, and 227 ms overall
17-03-17 20:49:54.188 -07 000000448 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:54.188 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:49:54.188 -07 000000433 INF: FPGA: 'ZDACW 38624' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:49:54.188 -07 000000448 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:49:54.188 -07 000000448 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:49:54.208 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:49:54.208 -07 000000458 INF: FPGA: Recv ZDACR 38624
17-03-17 20:49:54.218 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:49:54.218 -07 000000433 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 20:49:54.218 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:49:54.388 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:49:54.388 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 20:49:54.518 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.003063,
17-03-17 20:49:54.588 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 20:49:54.588 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 403 ms overall
17-03-17 20:49:54.628 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:54.628 -07 000000459 INF: FPGA: Recv YRDPOS 134582
17-03-17 20:49:54.638 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:49:54.638 -07 000000448 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:54.638 -07 000000448 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:49:54.638 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.844 mm, average velocity = 2.088 mm/sec
17-03-17 20:49:55.588 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:55.588 -07 000000576 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:49:55.598 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:49:55.598 -07 000000448 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:55.618 -07 000000448 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:49:55.618 -07 000000448 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:49:55.618 -07 000000448 INF: Y Motor: Moved to 65.7144 after 1663 ms (table move)
17-03-17 20:49:55.618 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176809 mm (DAC = 38624)
17-03-17 20:49:55.618 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:55.628 -07 000000433 INF: FPGA: Recv ZSGSRD 36822
17-03-17 20:49:55.628 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:49:55.628 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:55.628 -07 000000576 INF: FPGA: Recv ZSGSRD 36811
17-03-17 20:49:55.638 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:49:55.638 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:55.638 -07 000000433 INF: FPGA: Recv ZSGSRD 36819
17-03-17 20:49:55.648 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:55.648 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:55.648 -07 000000576 INF: FPGA: Recv ZSGSRD 36815
17-03-17 20:49:55.658 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:55.658 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:55.658 -07 000000462 INF: FPGA: Recv ZSGSRD 36810
17-03-17 20:49:55.668 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:55.668 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:55.668 -07 000000502 INF: FPGA: Recv ZSGSRD 36821
17-03-17 20:49:55.678 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:55.678 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:55.678 -07 000000458 INF: FPGA: Recv ZSGSRD 36805
17-03-17 20:49:55.688 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:55.688 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:55.688 -07 000000502 INF: FPGA: Recv ZSGSRD 36809
17-03-17 20:49:55.698 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:55.698 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:55.698 -07 000000448 INF: FPGA: Recv ZSGSRD 36812
17-03-17 20:49:55.708 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:55.708 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:55.708 -07 000000576 INF: FPGA: Recv ZSGSRD 36812
17-03-17 20:49:55.718 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:55.718 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:49:55.718 -07 000000462 INF: FPGA: Recv ZPIEZORD 33195
17-03-17 20:49:55.728 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:55.728 -07 000000608 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.894 V. Piezo Error = -8.0 V.
17-03-17 20:49:55.728 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36814 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36812 (-175.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36805 (-175.9 uncal um), Max = 36822 (-176.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:49:55.728 -07 000000608 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36814, posNoise = 8, negNoise = 9
17-03-17 20:49:55.728 -07 000000608 INF: Z Motor: After move to -0.176809, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:49:55.728 -07 000000608 INF: Z Motor: Settle wait time = 1444 ms, measure time = 104 ms (allowed 150 ms), total time = 1548 ms
17-03-17 20:49:55.728 -07 000000608 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:49:55.778 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1820 ms
17-03-17 20:49:55.778 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:49:55.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:49:55.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:49:55.788 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:49:55.788 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:49:55.788 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:49:55.788 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:49:55.788 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:49:55.788 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:49:55.798 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:49:55.798 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:49:55.808 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:49:55.808 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:49:55.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:49:55.858 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:49:56.058 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:49:56.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:49:56.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:49:56.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) start.
17-03-17 20:49:56.098 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:49:56.098 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 20:49:56.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 285 ms overall
17-03-17 20:49:56.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:49:56.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:56.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:49:56.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:49:56.198 -07 000000576 INF: Autofocus start
17-03-17 20:49:56.198 -07 000000576 INF: MeasureProfile start
17-03-17 20:49:56.198 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:49:56.198 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:49:56.208 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:49:56.208 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:49:56.208 -07 000000576 INF: MeasureProfile done
17-03-17 20:49:56.208 -07 000000576 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:49:56.208 -07 000000576 INF: Autofocus finished
17-03-17 20:49:56.408 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:49:56.408 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 20:49:56.408 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.176824297797923. ----------
17-03-17 20:49:56.418 -07 000000610 INF: Cycle	43	Tile	8	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:49:56.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37139, sync = True, waitForSettling = True)
17-03-17 20:49:56.418 -07 000000610 INF: Z Motor: Moving to -0.170011 mm, started at -0.176824 mm, distance = 6.81 um
17-03-17 20:49:56.418 -07 000000610 INF: FPGA: Xmit ZDACW 37139\n [Z Motor]
17-03-17 20:49:56.418 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:49:56.428 -07 000000610 INF: FPGA: 'ZDACW 37139' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:49:56.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:49:56.428 -07 000000458 INF: FPGA: Recv ZDACR 37139
17-03-17 20:49:56.438 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:56.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:49:56.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:56.588 -07 000000433 INF: FPGA: Recv ZSGSRD 35754
17-03-17 20:49:56.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:49:56.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:56.598 -07 000000462 INF: FPGA: Recv ZSGSRD 35756
17-03-17 20:49:56.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:56.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:56.608 -07 000000626 INF: FPGA: Recv ZSGSRD 35754
17-03-17 20:49:56.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:56.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:56.618 -07 000000459 INF: FPGA: Recv ZSGSRD 35755
17-03-17 20:49:56.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:56.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:56.628 -07 000000608 INF: FPGA: Recv ZSGSRD 35756
17-03-17 20:49:56.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:56.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:56.638 -07 000000462 INF: FPGA: Recv ZSGSRD 35749
17-03-17 20:49:56.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:56.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:56.648 -07 000000429 INF: FPGA: Recv ZSGSRD 35759
17-03-17 20:49:56.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:56.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:56.658 -07 000000459 INF: FPGA: Recv ZSGSRD 35761
17-03-17 20:49:56.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:56.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:56.668 -07 000000608 INF: FPGA: Recv ZSGSRD 35754
17-03-17 20:49:56.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:56.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:49:56.678 -07 000000502 INF: FPGA: Recv ZSGSRD 35753
17-03-17 20:49:56.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:56.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:49:56.688 -07 000000415 INF: FPGA: Recv ZPIEZORD 31781
17-03-17 20:49:56.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:49:56.698 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.667 V. Piezo Error = -8.8 V.
17-03-17 20:49:56.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35755 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35754 (-169.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35749 (-169.1 uncal um), Max = 35761 (-169.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:49:56.698 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35755, posNoise = 6, negNoise = 6
17-03-17 20:49:56.698 -07 000000610 INF: Z Motor: After move to -0.170011, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:49:56.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:49:56.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:49:56.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:49:56.698 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:49:56.698 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:49:56.698 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:49:56.698 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:49:56.698 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:49:56.698 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:49:56.698 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:49:56.698 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:49:56.698 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:49:56.698 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:49:56.698 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:49:56.698 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:49:56.698 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:49:56.708 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:49:56.718 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:49:56.718 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:49:56.718 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:49:56.718 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:49:56.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37316 150\n [Camera]
17-03-17 20:49:56.818 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:49:56.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:49:56.918 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:49:57.338 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:49:57.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:49:57.338 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:49:57.338 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:49:57.338 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 20:49:57.338 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:49:57.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:49:57.338 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:49:57.338 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:49:57.338 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1144753880, 0x0, 418435064) start.
17-03-17 20:49:57.528 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37316 806
17-03-17 20:49:57.678 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:49:57.728 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 20:49:57.728 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:49:57.728 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:57.728 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1144753880, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 20:49:57.728 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:49:57.728 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:57.728 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:49:57.728 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:49:57.728 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:49:57.738 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:49:57.878 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:49:57.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:49:57.878 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:49:57.888 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:49:57.888 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 20:49:57.888 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:49:57.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:49:57.888 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:49:57.888 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:49:57.888 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:49:58.068 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:49:58.078 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:49:58.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37316 150' command took 2 ms to send, 1350 ms to get response, and 1357 ms overall
17-03-17 20:49:58.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:49:58.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.170021057139798. ------
17-03-17 20:49:58.078 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:49:58.078 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17643 mm
17-03-17 20:49:58.078 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:49:58.078 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:49:58.078 -07 000000429 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 20:49:58.078 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38542, sync = True, waitForSettling = False)
17-03-17 20:49:58.078 -07 000000626 INF: Z Motor: Moving to -0.176434 mm, started at -0.170021 mm, distance = -6.41 um
17-03-17 20:49:58.078 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:49:58.088 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:49:58.088 -07 000000626 INF: FPGA: Xmit ZDACW 38542\n [Z Motor]
17-03-17 20:49:58.088 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:49:58.098 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:58.098 -07 000000626 INF: FPGA: 'ZDACW 38542' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:49:58.098 -07 000000462 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:49:58.108 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:49:58.108 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:49:58.108 -07 000000429 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:58.108 -07 000000429 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:49:58.108 -07 000000429 INF: Y Motor: Moving 1341 steps-18
17-03-17 20:49:58.118 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:49:58.128 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:49:58.288 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:49:58.288 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:49:58.288 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:58.288 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:49:58.288 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:49:58.288 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:49:58.398 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 110 ms.
17-03-17 20:49:58.398 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 114 ms.
17-03-17 20:49:58.398 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-17 20:49:58.408 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-17 20:49:59.238 -07 000000462 INF: FPGA: Recv ZDACR 38542
17-03-17 20:49:59.238 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:49:59.238 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 20:49:59.238 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 1111 ms to get response, and 1140 ms overall
17-03-17 20:49:59.238 -07 000000626 INF: Z Motor: MoveAbsStepped took 1152 ms (did NOT wait for settling yet))
17-03-17 20:49:59.238 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 1101 ms to get response, and 1130 ms overall
17-03-17 20:49:59.238 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1121 ms to get response, and 1150 ms overall
17-03-17 20:49:59.268 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:49:59.278 -07 000000462 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:49:59.278 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:49:59.278 -07 000000429 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:49:59.278 -07 000000429 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:49:59.278 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 1131 ms, distance = 0.838 mm, average velocity = 0.741 mm/sec
17-03-17 20:49:59.878 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.019446,
17-03-17 20:50:00.228 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:00.228 -07 000000608 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:50:00.238 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:00.238 -07 000000429 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:00.258 -07 000000429 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:50:00.258 -07 000000429 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:50:00.258 -07 000000429 INF: Y Motor: Moved to 66.5396 after 2176 ms (table move)
17-03-17 20:50:00.258 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176434 mm (DAC = 38542)
17-03-17 20:50:00.258 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:00.268 -07 000000576 INF: FPGA: Recv ZSGSRD 36756
17-03-17 20:50:00.268 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:50:00.268 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:00.268 -07 000000382 INF: FPGA: Recv ZSGSRD 36753
17-03-17 20:50:00.278 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:50:00.278 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:00.278 -07 000000382 INF: FPGA: Recv ZSGSRD 36753
17-03-17 20:50:00.288 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:00.288 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:00.288 -07 000000576 INF: FPGA: Recv ZSGSRD 36756
17-03-17 20:50:00.298 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:00.298 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:00.298 -07 000000448 INF: FPGA: Recv ZSGSRD 36751
17-03-17 20:50:00.308 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:00.308 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:00.308 -07 000000576 INF: FPGA: Recv ZSGSRD 36753
17-03-17 20:50:00.318 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:00.318 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:00.318 -07 000000382 INF: FPGA: Recv ZSGSRD 36756
17-03-17 20:50:00.328 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:00.328 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:00.328 -07 000000576 INF: FPGA: Recv ZSGSRD 36750
17-03-17 20:50:00.338 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:00.338 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:00.338 -07 000000448 INF: FPGA: Recv ZSGSRD 36756
17-03-17 20:50:00.348 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:00.348 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:00.348 -07 000000576 INF: FPGA: Recv ZSGSRD 36753
17-03-17 20:50:00.358 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:00.358 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:00.358 -07 000000608 INF: FPGA: Recv ZPIEZORD 33103
17-03-17 20:50:00.368 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:00.368 -07 000000501 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.881 V. Piezo Error = -8.1 V.
17-03-17 20:50:00.368 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36754 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36753 (-175.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36750 (-175.5 uncal um), Max = 36756 (-175.6 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:50:00.368 -07 000000501 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36754, posNoise = 2, negNoise = 4
17-03-17 20:50:00.368 -07 000000501 INF: Z Motor: After move to -0.176434, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:00.368 -07 000000501 INF: Z Motor: Settle wait time = 2179 ms, measure time = 102 ms (allowed 150 ms), total time = 2281 ms
17-03-17 20:50:00.368 -07 000000501 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:50:00.418 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2334 ms
17-03-17 20:50:00.418 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:50:00.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:00.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:00.418 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:00.418 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:00.418 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:50:00.418 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:00.428 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:50:00.428 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:50:00.428 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:50:00.428 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:50:00.428 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:50:00.428 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:50:00.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:50:00.478 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:50:00.678 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:50:00.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:50:00.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:50:00.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:50:00.718 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:50:00.718 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 20:50:00.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 20:50:00.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:50:00.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:00.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:50:00.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:50:00.818 -07 000000576 INF: Autofocus start
17-03-17 20:50:00.818 -07 000000576 INF: MeasureProfile start
17-03-17 20:50:00.818 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:00.818 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:00.828 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:50:00.828 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:50:00.828 -07 000000576 INF: MeasureProfile done
17-03-17 20:50:00.828 -07 000000576 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:50:00.828 -07 000000576 INF: Autofocus finished
17-03-17 20:50:01.028 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:50:01.028 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:50:01.028 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.176438845069417. ----------
17-03-17 20:50:01.038 -07 000000610 INF: Cycle	43	Tile	9	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:50:01.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37039, sync = True, waitForSettling = True)
17-03-17 20:50:01.038 -07 000000610 INF: Z Motor: Moving to -0.169554 mm, started at -0.176439 mm, distance = 6.89 um
17-03-17 20:50:01.038 -07 000000610 INF: FPGA: Xmit ZDACW 37039\n [Z Motor]
17-03-17 20:50:01.038 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:50:01.048 -07 000000610 INF: FPGA: 'ZDACW 37039' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:50:01.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:01.048 -07 000000448 INF: FPGA: Recv ZDACR 37039
17-03-17 20:50:01.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:01.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:50:01.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:01.208 -07 000000448 INF: FPGA: Recv ZSGSRD 35683
17-03-17 20:50:01.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:01.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:01.218 -07 000000576 INF: FPGA: Recv ZSGSRD 35685
17-03-17 20:50:01.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:01.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:01.228 -07 000000415 INF: FPGA: Recv ZSGSRD 35684
17-03-17 20:50:01.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:01.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:01.238 -07 000000459 INF: FPGA: Recv ZSGSRD 35683
17-03-17 20:50:01.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:01.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:01.248 -07 000000415 INF: FPGA: Recv ZSGSRD 35679
17-03-17 20:50:01.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:01.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:01.258 -07 000000415 INF: FPGA: Recv ZSGSRD 35687
17-03-17 20:50:01.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:01.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:01.268 -07 000000448 INF: FPGA: Recv ZSGSRD 35685
17-03-17 20:50:01.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:01.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:01.278 -07 000000608 INF: FPGA: Recv ZSGSRD 35683
17-03-17 20:50:01.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:01.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:01.288 -07 000000608 INF: FPGA: Recv ZSGSRD 35684
17-03-17 20:50:01.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:01.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:01.298 -07 000000608 INF: FPGA: Recv ZSGSRD 35679
17-03-17 20:50:01.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:01.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:01.308 -07 000000459 INF: FPGA: Recv ZPIEZORD 31695
17-03-17 20:50:01.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:01.318 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.652 V. Piezo Error = -8.8 V.
17-03-17 20:50:01.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35683 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35684 (-168.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35679 (-168.7 uncal um), Max = 35687 (-168.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:50:01.318 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35683, posNoise = 4, negNoise = 4
17-03-17 20:50:01.318 -07 000000610 INF: Z Motor: After move to -0.169554, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:01.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:50:01.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:01.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:01.318 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:01.318 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:01.318 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:50:01.318 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:50:01.318 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:50:01.318 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:01.318 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:50:01.318 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:50:01.318 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:50:01.318 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:50:01.328 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:50:01.328 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:50:01.328 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:50:01.328 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:50:01.338 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:50:01.338 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:50:01.338 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:50:01.338 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:50:01.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37215 150\n [Camera]
17-03-17 20:50:01.538 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:50:01.818 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:50:01.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:50:01.958 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:50:01.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:50:01.968 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:01.968 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:50:01.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:50:01.968 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:01.968 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:01.968 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:50:01.968 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:01.968 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:50:02.148 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37215 806
17-03-17 20:50:02.298 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:50:02.368 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:50:02.368 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:50:02.368 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:02.368 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 20:50:02.368 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:50:02.368 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:02.368 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:02.368 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:50:02.368 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:02.378 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:50:02.508 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:50:02.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:50:02.508 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:02.508 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:50:02.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:50:02.508 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:02.518 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:02.518 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:50:02.518 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:02.518 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:50:02.698 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-17 20:50:02.698 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:50:02.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37215 150' command took 2 ms to send, 1353 ms to get response, and 1357 ms overall
17-03-17 20:50:02.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:50:02.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.169558513865591. ------
17-03-17 20:50:02.818 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:02.818 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17632 mm
17-03-17 20:50:02.818 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:50:02.818 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:02.818 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:50:02.818 -07 000000415 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 20:50:02.818 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38516, sync = True, waitForSettling = False)
17-03-17 20:50:02.818 -07 000000459 INF: Z Motor: Moving to -0.176315 mm, started at -0.169559 mm, distance = -6.76 um
17-03-17 20:50:02.828 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:02.828 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:02.828 -07 000000501 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:50:02.838 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:50:02.838 -07 000000415 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:02.838 -07 000000415 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:50:02.838 -07 000000415 INF: Y Motor: Moving 1349 steps-27
17-03-17 20:50:02.838 -07 000000459 INF: FPGA: Xmit ZDACW 38516\n [Z Motor]
17-03-17 20:50:02.838 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:50:02.848 -07 000000459 INF: FPGA: 'ZDACW 38516' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:50:02.848 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:50:02.858 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:50:02.868 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:02.868 -07 000000448 INF: FPGA: Recv ZDACR 38516
17-03-17 20:50:02.878 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:50:02.878 -07 000000459 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 20:50:02.908 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:50:02.908 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:50:02.908 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:02.908 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 20:50:02.908 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:50:02.908 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:02.908 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:02.908 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:50:02.908 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:02.918 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:50:03.048 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:50:03.048 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:50:03.228 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 20:50:03.228 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:50:03.268 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:03.268 -07 000000459 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:50:03.278 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:50:03.278 -07 000000415 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:03.278 -07 000000415 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 20:50:03.278 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 20:50:04.228 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:04.228 -07 000000448 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:50:04.238 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:04.238 -07 000000415 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:04.258 -07 000000415 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:50:04.258 -07 000000415 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:50:04.258 -07 000000415 INF: Y Motor: Moved to 67.3721 after 1438 ms (table move)
17-03-17 20:50:04.258 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176315 mm (DAC = 38516)
17-03-17 20:50:04.258 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:04.268 -07 000000501 INF: FPGA: Recv ZSGSRD 36742
17-03-17 20:50:04.268 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:50:04.268 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:04.268 -07 000000626 INF: FPGA: Recv ZSGSRD 36736
17-03-17 20:50:04.278 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:04.278 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:04.278 -07 000000501 INF: FPGA: Recv ZSGSRD 36734
17-03-17 20:50:04.288 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:04.288 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:04.288 -07 000000459 INF: FPGA: Recv ZSGSRD 36735
17-03-17 20:50:04.298 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:04.298 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:04.298 -07 000000459 INF: FPGA: Recv ZSGSRD 36744
17-03-17 20:50:04.308 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:04.308 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:04.308 -07 000000448 INF: FPGA: Recv ZSGSRD 36736
17-03-17 20:50:04.318 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:04.318 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:04.318 -07 000000415 INF: FPGA: Recv ZSGSRD 36746
17-03-17 20:50:04.328 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:04.328 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:04.328 -07 000000415 INF: FPGA: Recv ZSGSRD 36741
17-03-17 20:50:04.338 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:04.338 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:04.338 -07 000000459 INF: FPGA: Recv ZSGSRD 36727
17-03-17 20:50:04.348 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:04.348 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:04.348 -07 000000459 INF: FPGA: Recv ZSGSRD 36736
17-03-17 20:50:04.358 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:04.358 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:04.358 -07 000000415 INF: FPGA: Recv ZPIEZORD 33110
17-03-17 20:50:04.368 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:04.368 -07 000000429 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.877 V. Piezo Error = -8.0 V.
17-03-17 20:50:04.368 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36738 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36736 (-175.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36727 (-175.4 uncal um), Max = 36746 (-175.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 20:50:04.368 -07 000000429 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36738, posNoise = 8, negNoise = 11
17-03-17 20:50:04.368 -07 000000429 INF: Z Motor: After move to -0.176315, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:04.368 -07 000000429 INF: Z Motor: Settle wait time = 1443 ms, measure time = 103 ms (allowed 150 ms), total time = 1546 ms
17-03-17 20:50:04.368 -07 000000429 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:50:04.418 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 20:50:04.418 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:50:04.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:04.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:04.418 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:04.418 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:50:04.418 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:04.418 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:04.418 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:50:04.418 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:50:04.428 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:50:04.428 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:50:04.428 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:50:04.428 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:50:04.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:50:04.478 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:50:04.678 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:50:04.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:50:04.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:50:04.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:50:04.718 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:50:04.718 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 20:50:04.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 20:50:04.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 20:50:04.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:04.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:50:04.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 20:50:04.818 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:04.818 -07 000000626 INF: Autofocus start
17-03-17 20:50:04.818 -07 000000626 INF: MeasureProfile start
17-03-17 20:50:04.818 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:04.828 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:50:04.828 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:50:04.828 -07 000000626 INF: MeasureProfile done
17-03-17 20:50:04.828 -07 000000626 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:50:04.828 -07 000000626 INF: Autofocus finished
17-03-17 20:50:05.028 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:50:05.028 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:50:05.038 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.176336057675149. ----------
17-03-17 20:50:05.038 -07 000000610 INF: Cycle	43	Tile	10	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:50:05.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37013, sync = True, waitForSettling = True)
17-03-17 20:50:05.038 -07 000000610 INF: Z Motor: Moving to -0.169435 mm, started at -0.176336 mm, distance = 6.90 um
17-03-17 20:50:05.038 -07 000000610 INF: FPGA: Xmit ZDACW 37013\n [Z Motor]
17-03-17 20:50:05.038 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:50:05.048 -07 000000610 INF: FPGA: 'ZDACW 37013' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:50:05.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:05.048 -07 000000501 INF: FPGA: Recv ZDACR 37013
17-03-17 20:50:05.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:05.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:50:05.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:05.208 -07 000000608 INF: FPGA: Recv ZSGSRD 35673
17-03-17 20:50:05.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:05.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:05.218 -07 000000382 INF: FPGA: Recv ZSGSRD 35662
17-03-17 20:50:05.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:05.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:05.238 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.997626,
17-03-17 20:50:05.238 -07 000000462 INF: FPGA: Recv ZSGSRD 35665
17-03-17 20:50:05.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:50:05.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:05.248 -07 000000462 INF: FPGA: Recv ZSGSRD 35663
17-03-17 20:50:05.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:05.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:05.268 -07 000000608 INF: FPGA: Recv ZSGSRD 35665
17-03-17 20:50:05.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:50:05.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:05.298 -07 000000429 INF: FPGA: Recv ZSGSRD 35665
17-03-17 20:50:05.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:50:05.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:05.318 -07 000000462 INF: FPGA: Recv ZSGSRD 35663
17-03-17 20:50:05.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:50:05.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:05.328 -07 000000501 INF: FPGA: Recv ZSGSRD 35660
17-03-17 20:50:05.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:05.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:05.338 -07 000000462 INF: FPGA: Recv ZSGSRD 35662
17-03-17 20:50:05.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:05.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:05.348 -07 000000501 INF: FPGA: Recv ZSGSRD 35670
17-03-17 20:50:05.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:05.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:05.358 -07 000000462 INF: FPGA: Recv ZPIEZORD 31686
17-03-17 20:50:05.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:05.368 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.648 V. Piezo Error = -8.8 V.
17-03-17 20:50:05.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35665 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35664 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35660 (-168.5 uncal um), Max = 35673 (-168.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:50:05.368 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35665, posNoise = 8, negNoise = 5
17-03-17 20:50:05.368 -07 000000610 INF: Z Motor: After move to -0.169435, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:05.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-17 20:50:05.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:05.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:05.368 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:05.368 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:50:05.368 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:05.368 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:50:05.368 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:50:05.368 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:05.368 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:50:05.368 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:50:05.368 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:50:05.368 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:50:05.378 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:50:05.378 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:50:05.378 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:50:05.378 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:50:05.388 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:50:05.388 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:50:05.388 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:50:05.388 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:50:05.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37190 150\n [Camera]
17-03-17 20:50:05.588 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:50:06.008 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:50:06.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:50:06.008 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:06.018 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:50:06.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:50:06.018 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:06.018 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:06.018 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:50:06.018 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:06.018 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:50:06.208 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37190 806
17-03-17 20:50:06.348 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:50:06.398 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:50:06.398 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:50:06.398 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:06.398 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:06.408 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:50:06.408 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:50:06.408 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:50:06.408 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:06.408 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:06.408 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:50:06.558 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:50:06.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:50:06.558 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:06.558 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:50:06.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:50:06.558 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:06.568 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:06.568 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1073909352, 0x0, 391868352) start.
17-03-17 20:50:06.568 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:06.568 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:50:06.748 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:50:06.748 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:50:06.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37190 150' command took 2 ms to send, 1353 ms to get response, and 1358 ms overall
17-03-17 20:50:06.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:50:06.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.169442878047039. ------
17-03-17 20:50:06.758 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:06.758 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17567 mm
17-03-17 20:50:06.758 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:50:06.758 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:06.758 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:50:06.758 -07 000000576 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 20:50:06.758 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 38374, sync = True, waitForSettling = False)
17-03-17 20:50:06.758 -07 000000429 INF: Z Motor: Moving to -0.175665 mm, started at -0.169443 mm, distance = -6.22 um
17-03-17 20:50:06.768 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:06.768 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:06.768 -07 000000415 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:50:06.778 -07 000000429 INF: FPGA: Xmit ZDACW 38374\n [Z Motor]
17-03-17 20:50:06.778 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:50:06.778 -07 000000576 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:06.778 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:50:06.778 -07 000000576 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:50:06.778 -07 000000576 INF: Y Motor: Moving 1344 steps-22
17-03-17 20:50:06.788 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:50:06.788 -07 000000429 INF: FPGA: 'ZDACW 38374' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:50:06.798 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:50:06.808 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:06.808 -07 000000462 INF: FPGA: Recv ZDACR 38374
17-03-17 20:50:06.818 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:50:06.818 -07 000000429 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 20:50:06.818 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:50:06.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:50:06.968 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1073909352, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:50:06.968 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:50:06.968 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:06.968 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:50:06.968 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:50:06.968 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:06.968 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:06.968 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 20:50:06.968 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:06.978 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:50:06.988 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:50:06.988 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-17 20:50:07.168 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 20:50:07.168 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:50:07.208 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:07.208 -07 000000501 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:50:07.218 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:50:07.218 -07 000000576 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:07.218 -07 000000576 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:50:07.218 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.841 mm, average velocity = 2.133 mm/sec
17-03-17 20:50:08.168 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:08.168 -07 000000608 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:50:08.178 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:08.178 -07 000000576 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:08.198 -07 000000576 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:50:08.198 -07 000000576 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:50:08.198 -07 000000576 INF: Y Motor: Moved to 68.2051 after 1437 ms (table move)
17-03-17 20:50:08.198 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175665 mm (DAC = 38374)
17-03-17 20:50:08.198 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:08.198 -07 000000608 INF: FPGA: Recv ZSGSRD 36630
17-03-17 20:50:08.208 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:50:08.208 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:08.208 -07 000000501 INF: FPGA: Recv ZSGSRD 36634
17-03-17 20:50:08.218 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:08.218 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:08.218 -07 000000429 INF: FPGA: Recv ZSGSRD 36639
17-03-17 20:50:08.228 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:08.228 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:08.228 -07 000000462 INF: FPGA: Recv ZSGSRD 36635
17-03-17 20:50:08.238 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:08.238 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:08.238 -07 000000429 INF: FPGA: Recv ZSGSRD 36638
17-03-17 20:50:08.248 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:08.248 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:08.248 -07 000000448 INF: FPGA: Recv ZSGSRD 36631
17-03-17 20:50:08.258 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:08.258 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:08.258 -07 000000501 INF: FPGA: Recv ZSGSRD 36647
17-03-17 20:50:08.268 -07 000000382 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:08.268 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:08.268 -07 000000501 INF: FPGA: Recv ZSGSRD 36637
17-03-17 20:50:08.278 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:08.278 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:08.278 -07 000000462 INF: FPGA: Recv ZSGSRD 36626
17-03-17 20:50:08.288 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:08.288 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:08.288 -07 000000576 INF: FPGA: Recv ZSGSRD 36637
17-03-17 20:50:08.298 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:08.298 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:08.298 -07 000000462 INF: FPGA: Recv ZPIEZORD 32977
17-03-17 20:50:08.308 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:08.308 -07 000000382 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.855 V. Piezo Error = -8.1 V.
17-03-17 20:50:08.308 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36635 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36636 (-174.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 36626 (-174.7 uncal um), Max = 36647 (-174.9 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:50:08.308 -07 000000382 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36635, posNoise = 12, negNoise = 9
17-03-17 20:50:08.308 -07 000000382 INF: Z Motor: After move to -0.175665, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:08.308 -07 000000382 INF: Z Motor: Settle wait time = 1440 ms, measure time = 105 ms (allowed 150 ms), total time = 1545 ms
17-03-17 20:50:08.308 -07 000000382 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:50:08.358 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 20:50:08.358 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:50:08.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:08.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:08.358 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:08.358 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:50:08.358 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:08.358 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:08.358 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:50:08.358 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:50:08.358 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:50:08.368 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:50:08.368 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:50:08.368 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:50:08.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:50:08.418 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:50:08.618 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:50:08.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:50:08.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:50:08.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1109331616, 0x0, 559484976) start.
17-03-17 20:50:08.658 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:50:08.658 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:50:08.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 20:50:08.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1109331616, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:50:08.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:08.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:50:08.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:50:08.758 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:08.758 -07 000000429 INF: Autofocus start
17-03-17 20:50:08.758 -07 000000429 INF: MeasureProfile start
17-03-17 20:50:08.758 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:08.768 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:50:08.768 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:50:08.778 -07 000000429 INF: MeasureProfile done
17-03-17 20:50:08.778 -07 000000429 INF: X=64  Z correction [um]=0.2557664
17-03-17 20:50:08.778 -07 000000429 INF: Autofocus finished
17-03-17 20:50:08.968 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:50:08.968 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:50:08.968 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175674363824548. ----------
17-03-17 20:50:08.968 -07 000000610 INF: Cycle	43	Tile	11	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:50:08.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36943, sync = True, waitForSettling = True)
17-03-17 20:50:08.978 -07 000000610 INF: Z Motor: Moving to -0.169114 mm, started at -0.175674 mm, distance = 6.56 um
17-03-17 20:50:08.978 -07 000000610 INF: FPGA: Xmit ZDACW 36943\n [Z Motor]
17-03-17 20:50:08.978 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:50:08.988 -07 000000610 INF: FPGA: 'ZDACW 36943' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:08.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:08.988 -07 000000462 INF: FPGA: Recv ZDACR 36943
17-03-17 20:50:08.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:08.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:50:09.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:09.148 -07 000000459 INF: FPGA: Recv ZSGSRD 35623
17-03-17 20:50:09.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:09.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:09.158 -07 000000459 INF: FPGA: Recv ZSGSRD 35622
17-03-17 20:50:09.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:09.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:09.168 -07 000000459 INF: FPGA: Recv ZSGSRD 35610
17-03-17 20:50:09.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:09.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:09.178 -07 000000459 INF: FPGA: Recv ZSGSRD 35609
17-03-17 20:50:09.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:09.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:09.188 -07 000000501 INF: FPGA: Recv ZSGSRD 35620
17-03-17 20:50:09.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:09.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:09.198 -07 000000501 INF: FPGA: Recv ZSGSRD 35614
17-03-17 20:50:09.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:09.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:09.208 -07 000000459 INF: FPGA: Recv ZSGSRD 35611
17-03-17 20:50:09.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:09.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:09.218 -07 000000459 INF: FPGA: Recv ZSGSRD 35623
17-03-17 20:50:09.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:09.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:09.228 -07 000000459 INF: FPGA: Recv ZSGSRD 35616
17-03-17 20:50:09.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:09.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:09.238 -07 000000459 INF: FPGA: Recv ZSGSRD 35613
17-03-17 20:50:09.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:09.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:09.248 -07 000000415 INF: FPGA: Recv ZPIEZORD 31628
17-03-17 20:50:09.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:50:09.258 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -8.8 V.
17-03-17 20:50:09.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35616 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35615 (-168.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35609 (-168.2 uncal um), Max = 35623 (-168.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:50:09.258 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35616, posNoise = 7, negNoise = 7
17-03-17 20:50:09.258 -07 000000610 INF: Z Motor: After move to -0.169114, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:09.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:50:09.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:09.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:09.258 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:09.258 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:09.258 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:50:09.258 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:09.258 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:50:09.258 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:50:09.258 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:50:09.258 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:50:09.268 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 20:50:09.268 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:50:09.268 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:50:09.268 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:50:09.268 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:50:09.268 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:50:09.278 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:50:09.278 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:50:09.278 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:50:09.278 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:50:09.278 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37119 150\n [Camera]
17-03-17 20:50:09.478 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:50:09.898 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:50:09.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:50:09.898 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:09.898 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:09.898 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 20:50:09.908 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:50:09.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:50:09.908 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:09.908 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:09.908 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1144753880, 0x0, 418435064) start.
17-03-17 20:50:10.098 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37119 809
17-03-17 20:50:10.238 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:50:10.298 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:50:10.298 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:50:10.298 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:10.298 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1144753880, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 20:50:10.298 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:50:10.298 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:10.298 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:10.298 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:50:10.298 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:10.308 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:50:10.448 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:50:10.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:50:10.448 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:10.448 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:10.448 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 20:50:10.448 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:50:10.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:50:10.448 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:10.448 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:10.448 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:50:10.638 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.963579,
17-03-17 20:50:10.638 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-17 20:50:10.638 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:50:10.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37119 150' command took 2 ms to send, 1354 ms to get response, and 1357 ms overall
17-03-17 20:50:10.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:50:10.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.169128091652093. ------
17-03-17 20:50:10.638 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17575 mm
17-03-17 20:50:10.638 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:50:10.648 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:50:10.648 -07 000000415 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 20:50:10.648 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38393, sync = True, waitForSettling = False)
17-03-17 20:50:10.648 -07 000000448 INF: Z Motor: Moving to -0.175752 mm, started at -0.169128 mm, distance = -6.62 um
17-03-17 20:50:10.758 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:10.758 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:10.768 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-17 20:50:10.768 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:10.768 -07 000000576 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:50:10.778 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 128 ms overall
17-03-17 20:50:10.778 -07 000000415 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:10.778 -07 000000448 INF: FPGA: Xmit ZDACW 38393\n [Z Motor]
17-03-17 20:50:10.778 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:50:10.778 -07 000000415 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:50:10.778 -07 000000415 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:50:10.788 -07 000000448 INF: FPGA: 'ZDACW 38393' command took 0 ms to send, 0 ms to get response, and 137 ms overall
17-03-17 20:50:10.798 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:50:10.808 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:50:10.818 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:10.818 -07 000000382 INF: FPGA: Recv ZDACR 38393
17-03-17 20:50:10.828 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 20:50:10.828 -07 000000448 INF: Z Motor: MoveAbsStepped took 178 ms (did NOT wait for settling yet))
17-03-17 20:50:10.838 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:50:10.838 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:50:10.838 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:10.848 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:50:10.848 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:50:10.848 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:50:10.848 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:50:10.848 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:10.858 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:10.858 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:50:10.998 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:50:10.998 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 20:50:11.178 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 20:50:11.178 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 404 ms overall
17-03-17 20:50:11.218 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:11.218 -07 000000462 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:50:11.228 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:50:11.228 -07 000000415 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:11.228 -07 000000415 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:50:11.228 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 405 ms, distance = 0.838 mm, average velocity = 2.068 mm/sec
17-03-17 20:50:11.818 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:50:11.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:50:12.178 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:12.178 -07 000000448 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:50:12.188 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:12.188 -07 000000415 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:12.208 -07 000000415 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:50:12.208 -07 000000415 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:50:12.208 -07 000000415 INF: Y Motor: Moved to 69.0273 after 1562 ms (table move)
17-03-17 20:50:12.208 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175752 mm (DAC = 38393)
17-03-17 20:50:12.208 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:12.208 -07 000000462 INF: FPGA: Recv ZSGSRD 36653
17-03-17 20:50:12.218 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:50:12.218 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:12.218 -07 000000626 INF: FPGA: Recv ZSGSRD 36655
17-03-17 20:50:12.228 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:12.228 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:12.228 -07 000000429 INF: FPGA: Recv ZSGSRD 36643
17-03-17 20:50:12.238 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:12.238 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:12.238 -07 000000415 INF: FPGA: Recv ZSGSRD 36650
17-03-17 20:50:12.248 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:12.248 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:12.248 -07 000000608 INF: FPGA: Recv ZSGSRD 36646
17-03-17 20:50:12.258 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:12.258 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:12.258 -07 000000626 INF: FPGA: Recv ZSGSRD 36653
17-03-17 20:50:12.268 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:12.268 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:12.268 -07 000000429 INF: FPGA: Recv ZSGSRD 36650
17-03-17 20:50:12.278 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:12.278 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:12.278 -07 000000576 INF: FPGA: Recv ZSGSRD 36640
17-03-17 20:50:12.288 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:12.288 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:12.288 -07 000000459 INF: FPGA: Recv ZSGSRD 36644
17-03-17 20:50:12.298 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:12.298 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:12.298 -07 000000626 INF: FPGA: Recv ZSGSRD 36646
17-03-17 20:50:12.308 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:12.308 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:12.308 -07 000000462 INF: FPGA: Recv ZPIEZORD 32985
17-03-17 20:50:12.318 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:12.318 -07 000000501 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.858 V. Piezo Error = -8.1 V.
17-03-17 20:50:12.318 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36648 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36648 (-174.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36640 (-174.8 uncal um), Max = 36655 (-174.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:50:12.318 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36648, posNoise = 7, negNoise = 8
17-03-17 20:50:12.318 -07 000000501 INF: Z Motor: After move to -0.175752, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:12.318 -07 000000501 INF: Z Motor: Settle wait time = 1564 ms, measure time = 105 ms (allowed 150 ms), total time = 1669 ms
17-03-17 20:50:12.318 -07 000000501 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:50:12.368 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1721 ms
17-03-17 20:50:12.368 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:50:12.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:12.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:12.368 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:12.368 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:12.368 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:50:12.368 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:12.368 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:50:12.368 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:50:12.368 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:50:12.368 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:50:12.378 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:50:12.378 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:50:12.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:50:12.428 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:50:12.628 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:50:12.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:50:12.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:50:12.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:50:12.668 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:50:12.668 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:50:12.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 20:50:12.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:50:12.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:12.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:50:12.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:50:12.868 -07 000000462 INF: Autofocus start
17-03-17 20:50:12.868 -07 000000462 INF: MeasureProfile start
17-03-17 20:50:12.868 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:12.868 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:12.878 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:50:12.878 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:50:12.878 -07 000000462 INF: MeasureProfile done
17-03-17 20:50:12.878 -07 000000462 INF: X=0  Z correction [um]=-0.0713522
17-03-17 20:50:12.878 -07 000000462 INF: Autofocus finished
17-03-17 20:50:13.078 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:50:13.078 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:50:13.078 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.17575787858239. ----------
17-03-17 20:50:13.078 -07 000000610 INF: Cycle	43	Tile	12	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:50:13.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36890, sync = True, waitForSettling = True)
17-03-17 20:50:13.088 -07 000000610 INF: Z Motor: Moving to -0.168872 mm, started at -0.175758 mm, distance = 6.89 um
17-03-17 20:50:13.088 -07 000000610 INF: FPGA: Xmit ZDACW 36890\n [Z Motor]
17-03-17 20:50:13.088 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:50:13.098 -07 000000610 INF: FPGA: 'ZDACW 36890' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:13.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:13.098 -07 000000415 INF: FPGA: Recv ZDACR 36890
17-03-17 20:50:13.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:13.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:50:13.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:13.258 -07 000000459 INF: FPGA: Recv ZSGSRD 35582
17-03-17 20:50:13.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 5 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:13.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:13.268 -07 000000448 INF: FPGA: Recv ZSGSRD 35581
17-03-17 20:50:13.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:13.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:13.278 -07 000000429 INF: FPGA: Recv ZSGSRD 35577
17-03-17 20:50:13.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:13.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:13.288 -07 000000448 INF: FPGA: Recv ZSGSRD 35574
17-03-17 20:50:13.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:50:13.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:13.298 -07 000000459 INF: FPGA: Recv ZSGSRD 35577
17-03-17 20:50:13.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:13.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:13.308 -07 000000576 INF: FPGA: Recv ZSGSRD 35576
17-03-17 20:50:13.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:13.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:13.318 -07 000000448 INF: FPGA: Recv ZSGSRD 35574
17-03-17 20:50:13.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:13.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:13.328 -07 000000429 INF: FPGA: Recv ZSGSRD 35578
17-03-17 20:50:13.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:13.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:13.338 -07 000000462 INF: FPGA: Recv ZSGSRD 35569
17-03-17 20:50:13.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:13.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:13.348 -07 000000626 INF: FPGA: Recv ZSGSRD 35585
17-03-17 20:50:13.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:13.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:13.358 -07 000000448 INF: FPGA: Recv ZPIEZORD 31589
17-03-17 20:50:13.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:13.368 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.629 V. Piezo Error = -8.8 V.
17-03-17 20:50:13.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35577 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35577 (-168.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35569 (-168.0 uncal um), Max = 35585 (-168.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:50:13.368 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35577, posNoise = 8, negNoise = 8
17-03-17 20:50:13.368 -07 000000610 INF: Z Motor: After move to -0.168872, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:13.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:50:13.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:13.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:13.368 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:13.368 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:50:13.368 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:13.368 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:50:13.368 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:50:13.368 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:13.368 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:50:13.368 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:50:13.368 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:50:13.368 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:50:13.368 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:50:13.368 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:50:13.368 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:50:13.368 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:50:13.378 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:50:13.378 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:50:13.378 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:50:13.378 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:50:13.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 37067 150\n [Camera]
17-03-17 20:50:13.588 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:50:14.008 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:50:14.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:50:14.008 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:14.018 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:50:14.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:50:14.018 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:14.018 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:14.018 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:50:14.018 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:14.018 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:50:14.208 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37067 806
17-03-17 20:50:14.348 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:50:14.398 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:50:14.398 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:50:14.398 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:14.398 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:50:14.398 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:50:14.398 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:14.398 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:14.398 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:50:14.398 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:14.408 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:50:14.558 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:50:14.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:50:14.558 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:14.558 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:50:14.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:50:14.558 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:14.568 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:14.568 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:50:14.568 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:14.568 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:50:14.748 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-17 20:50:14.748 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:50:14.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 37067 150' command took 2 ms to send, 1354 ms to get response, and 1361 ms overall
17-03-17 20:50:14.868 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:50:14.868 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.168877547378565. ------
17-03-17 20:50:14.868 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:14.868 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17527 mm
17-03-17 20:50:14.868 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:50:14.868 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:50:14.868 -07 000000429 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 20:50:14.868 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:14.868 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38287, sync = True, waitForSettling = False)
17-03-17 20:50:14.868 -07 000000502 INF: Z Motor: Moving to -0.175267 mm, started at -0.168878 mm, distance = -6.39 um
17-03-17 20:50:14.878 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:14.878 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:50:14.878 -07 000000501 INF: FPGA: Recv YRDPOS 141369
17-03-17 20:50:14.888 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:50:14.888 -07 000000429 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:14.888 -07 000000502 INF: FPGA: Xmit ZDACW 38287\n [Z Motor]
17-03-17 20:50:14.888 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:50:14.888 -07 000000429 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:50:14.888 -07 000000429 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:50:14.898 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:50:14.898 -07 000000502 INF: FPGA: 'ZDACW 38287' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:50:14.908 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:50:14.918 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:14.918 -07 000000626 INF: FPGA: Recv ZDACR 38287
17-03-17 20:50:14.928 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:50:14.928 -07 000000502 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 20:50:14.948 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:50:14.948 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:50:14.948 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:14.948 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 20:50:14.948 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:50:14.948 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:14.948 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:14.958 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:14.958 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:50:14.958 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:50:15.098 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:50:15.098 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:50:15.278 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 20:50:15.278 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:50:15.318 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:15.318 -07 000000459 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:50:15.328 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:50:15.328 -07 000000429 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:15.328 -07 000000429 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:50:15.328 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.140 mm/sec
17-03-17 20:50:16.158 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.011254,
17-03-17 20:50:16.278 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:16.278 -07 000000415 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:50:16.288 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:16.288 -07 000000429 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:16.308 -07 000000429 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:50:16.308 -07 000000429 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:50:16.308 -07 000000429 INF: Y Motor: Moved to 69.8633 after 1436 ms (table move)
17-03-17 20:50:16.308 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175267 mm (DAC = 38287)
17-03-17 20:50:16.308 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:16.318 -07 000000448 INF: FPGA: Recv ZSGSRD 36574
17-03-17 20:50:16.318 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:50:16.318 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:16.318 -07 000000448 INF: FPGA: Recv ZSGSRD 36572
17-03-17 20:50:16.328 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:16.328 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:16.328 -07 000000448 INF: FPGA: Recv ZSGSRD 36574
17-03-17 20:50:16.338 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:16.338 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:16.338 -07 000000448 INF: FPGA: Recv ZSGSRD 36574
17-03-17 20:50:16.348 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:16.348 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:16.348 -07 000000576 INF: FPGA: Recv ZSGSRD 36583
17-03-17 20:50:16.358 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:16.358 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:16.358 -07 000000576 INF: FPGA: Recv ZSGSRD 36574
17-03-17 20:50:16.368 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:16.368 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:16.368 -07 000000576 INF: FPGA: Recv ZSGSRD 36578
17-03-17 20:50:16.378 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:16.378 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:16.378 -07 000000501 INF: FPGA: Recv ZSGSRD 36574
17-03-17 20:50:16.388 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:16.388 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:16.388 -07 000000501 INF: FPGA: Recv ZSGSRD 36571
17-03-17 20:50:16.398 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:16.398 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:16.398 -07 000000501 INF: FPGA: Recv ZSGSRD 36575
17-03-17 20:50:16.408 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:16.408 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:16.408 -07 000000501 INF: FPGA: Recv ZPIEZORD 32896
17-03-17 20:50:16.418 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:16.418 -07 000000462 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.842 V. Piezo Error = -8.1 V.
17-03-17 20:50:16.418 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36575 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36574 (-174.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36571 (-174.4 uncal um), Max = 36583 (-174.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:50:16.418 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36575, posNoise = 8, negNoise = 4
17-03-17 20:50:16.418 -07 000000462 INF: Z Motor: After move to -0.175267, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:16.418 -07 000000462 INF: Z Motor: Settle wait time = 1439 ms, measure time = 103 ms (allowed 150 ms), total time = 1542 ms
17-03-17 20:50:16.418 -07 000000462 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:50:16.468 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 20:50:16.468 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:50:16.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:16.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:16.468 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:16.468 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:50:16.468 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:16.468 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:16.478 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:50:16.478 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:50:16.478 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:50:16.478 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:50:16.488 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:50:16.488 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:50:16.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:50:16.528 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:50:16.728 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:50:16.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:50:16.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:50:16.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:50:16.768 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:50:16.768 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 20:50:16.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 20:50:16.818 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:50:16.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:50:16.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:16.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:50:16.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:50:16.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:50:16.868 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:16.868 -07 000000415 INF: Autofocus start
17-03-17 20:50:16.868 -07 000000415 INF: MeasureProfile start
17-03-17 20:50:16.868 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:16.878 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:50:16.878 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:50:16.878 -07 000000415 INF: MeasureProfile done
17-03-17 20:50:16.878 -07 000000415 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:50:16.878 -07 000000415 INF: Autofocus finished
17-03-17 20:50:17.078 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:50:17.078 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:50:17.078 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.175288911096042. ----------
17-03-17 20:50:17.078 -07 000000610 INF: Cycle	43	Tile	13	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:50:17.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36820, sync = True, waitForSettling = True)
17-03-17 20:50:17.088 -07 000000610 INF: Z Motor: Moving to -0.168551 mm, started at -0.175289 mm, distance = 6.74 um
17-03-17 20:50:17.088 -07 000000610 INF: FPGA: Xmit ZDACW 36820\n [Z Motor]
17-03-17 20:50:17.088 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:50:17.098 -07 000000610 INF: FPGA: 'ZDACW 36820' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:17.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:17.098 -07 000000429 INF: FPGA: Recv ZDACR 36820
17-03-17 20:50:17.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:17.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:50:17.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:17.288 -07 000000458 INF: FPGA: Recv ZSGSRD 35527
17-03-17 20:50:17.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 28 ms to send, 4 ms to get response, and 34 ms overall
17-03-17 20:50:17.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:17.288 -07 000000429 INF: FPGA: Recv ZSGSRD 35531
17-03-17 20:50:17.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:50:17.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:17.298 -07 000000458 INF: FPGA: Recv ZSGSRD 35526
17-03-17 20:50:17.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:17.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:17.308 -07 000000448 INF: FPGA: Recv ZSGSRD 35525
17-03-17 20:50:17.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:17.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:17.318 -07 000000415 INF: FPGA: Recv ZSGSRD 35528
17-03-17 20:50:17.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:17.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:17.328 -07 000000462 INF: FPGA: Recv ZSGSRD 35528
17-03-17 20:50:17.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:17.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:17.338 -07 000000429 INF: FPGA: Recv ZSGSRD 35529
17-03-17 20:50:17.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:17.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:17.348 -07 000000626 INF: FPGA: Recv ZSGSRD 35531
17-03-17 20:50:17.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:17.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:17.358 -07 000000502 INF: FPGA: Recv ZSGSRD 35529
17-03-17 20:50:17.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:17.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:17.368 -07 000000458 INF: FPGA: Recv ZSGSRD 35525
17-03-17 20:50:17.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:17.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:17.378 -07 000000462 INF: FPGA: Recv ZPIEZORD 31506
17-03-17 20:50:17.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:17.388 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -8.9 V.
17-03-17 20:50:17.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35528 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35528 (-167.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35525 (-167.7 uncal um), Max = 35531 (-167.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:50:17.388 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35528, posNoise = 3, negNoise = 3
17-03-17 20:50:17.388 -07 000000610 INF: Z Motor: After move to -0.168551, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:17.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 300 ms)
17-03-17 20:50:17.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:17.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:17.388 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:17.388 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:17.388 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:50:17.388 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:50:17.388 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:50:17.388 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:17.388 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:50:17.388 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:50:17.388 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:50:17.388 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:50:17.388 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:50:17.388 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:50:17.398 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:50:17.398 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:50:17.398 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:50:17.398 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:50:17.398 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:50:17.398 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:50:17.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 36996 150\n [Camera]
17-03-17 20:50:17.608 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:50:18.028 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:50:18.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:50:18.028 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:18.028 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:50:18.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:50:18.028 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:18.038 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:18.038 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:50:18.038 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:18.038 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:50:18.218 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36996 806
17-03-17 20:50:18.368 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:50:18.428 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:50:18.428 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:50:18.428 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:18.438 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:50:18.438 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:50:18.438 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:18.438 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:18.438 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:50:18.438 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:18.448 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:50:18.568 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:50:18.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:50:18.578 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:18.578 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:50:18.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:50:18.578 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:18.578 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:18.578 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1073909352, 0x0, 391868352) start.
17-03-17 20:50:18.578 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:18.578 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:50:18.768 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:50:18.768 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:50:18.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 36996 150' command took 2 ms to send, 1353 ms to get response, and 1360 ms overall
17-03-17 20:50:18.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:50:18.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.168562760983618. ------
17-03-17 20:50:18.778 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17493 mm
17-03-17 20:50:18.778 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:50:18.778 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:18.778 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:50:18.778 -07 000000415 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 20:50:18.778 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:18.778 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38214, sync = True, waitForSettling = False)
17-03-17 20:50:18.778 -07 000000462 INF: Z Motor: Moving to -0.174932 mm, started at -0.168563 mm, distance = -6.37 um
17-03-17 20:50:18.788 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:50:18.788 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:18.788 -07 000000429 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:50:18.798 -07 000000462 INF: FPGA: Xmit ZDACW 38214\n [Z Motor]
17-03-17 20:50:18.798 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:50:18.798 -07 000000415 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:18.798 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:50:18.798 -07 000000415 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:50:18.798 -07 000000415 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:50:18.808 -07 000000462 INF: FPGA: 'ZDACW 38214' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:50:18.808 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:50:18.818 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:50:18.828 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:18.828 -07 000000429 INF: FPGA: Recv ZDACR 38214
17-03-17 20:50:18.838 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:50:18.838 -07 000000462 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 20:50:18.978 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1073909352, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:50:18.978 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:50:18.978 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:18.978 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:50:18.978 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:50:18.978 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:18.988 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:18.988 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:50:18.988 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:50:18.998 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 20:50:19.008 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:50:19.008 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:50:19.188 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 20:50:19.188 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:50:19.228 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:19.228 -07 000000576 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:50:19.238 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:50:19.238 -07 000000415 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:19.238 -07 000000415 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:50:19.238 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.125 mm/sec
17-03-17 20:50:20.188 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:20.188 -07 000000626 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:50:20.198 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:20.198 -07 000000415 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:20.218 -07 000000415 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:50:20.218 -07 000000415 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:50:20.218 -07 000000415 INF: Y Motor: Moved to 70.6890 after 1439 ms (table move)
17-03-17 20:50:20.218 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174932 mm (DAC = 38214)
17-03-17 20:50:20.218 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:20.228 -07 000000576 INF: FPGA: Recv ZSGSRD 36530
17-03-17 20:50:20.228 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:50:20.228 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:20.228 -07 000000576 INF: FPGA: Recv ZSGSRD 36520
17-03-17 20:50:20.238 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:20.238 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:20.238 -07 000000502 INF: FPGA: Recv ZSGSRD 36517
17-03-17 20:50:20.248 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:20.248 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:20.248 -07 000000576 INF: FPGA: Recv ZSGSRD 36524
17-03-17 20:50:20.258 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:20.258 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:20.258 -07 000000502 INF: FPGA: Recv ZSGSRD 36525
17-03-17 20:50:20.268 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:20.268 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:20.268 -07 000000576 INF: FPGA: Recv ZSGSRD 36519
17-03-17 20:50:20.278 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:20.278 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:20.278 -07 000000576 INF: FPGA: Recv ZSGSRD 36519
17-03-17 20:50:20.288 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:20.288 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:20.288 -07 000000429 INF: FPGA: Recv ZSGSRD 36516
17-03-17 20:50:20.298 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:20.298 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:20.298 -07 000000501 INF: FPGA: Recv ZSGSRD 36520
17-03-17 20:50:20.308 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:20.308 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:20.308 -07 000000429 INF: FPGA: Recv ZSGSRD 36520
17-03-17 20:50:20.318 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:20.318 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:20.318 -07 000000501 INF: FPGA: Recv ZPIEZORD 32804
17-03-17 20:50:20.328 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:20.328 -07 000000458 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.831 V. Piezo Error = -8.2 V.
17-03-17 20:50:20.328 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36521 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36520 (-174.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36516 (-174.0 uncal um), Max = 36530 (-174.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:50:20.328 -07 000000458 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36521, posNoise = 9, negNoise = 5
17-03-17 20:50:20.328 -07 000000458 INF: Z Motor: After move to -0.174932, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:20.328 -07 000000458 INF: Z Motor: Settle wait time = 1442 ms, measure time = 103 ms (allowed 150 ms), total time = 1545 ms
17-03-17 20:50:20.328 -07 000000458 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:50:20.378 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 20:50:20.378 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:50:20.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:20.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:20.378 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:20.378 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:50:20.378 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:20.388 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:20.388 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:50:20.388 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:50:20.388 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:50:20.388 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:50:20.398 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:50:20.398 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:50:20.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:50:20.438 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:50:20.638 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:50:20.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:50:20.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:50:20.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1109331616, 0x0, 559484976) start.
17-03-17 20:50:20.678 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:50:20.678 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 20:50:20.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 20:50:20.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1109331616, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:50:20.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:20.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:50:20.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:50:20.778 -07 000000462 INF: Autofocus start
17-03-17 20:50:20.778 -07 000000462 INF: MeasureProfile start
17-03-17 20:50:20.778 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:20.778 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:20.788 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:50:20.788 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:50:20.788 -07 000000462 INF: MeasureProfile done
17-03-17 20:50:20.788 -07 000000462 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 20:50:20.788 -07 000000462 INF: Autofocus finished
17-03-17 20:50:20.988 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:50:20.988 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:50:20.988 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.174942003640387. ----------
17-03-17 20:50:20.988 -07 000000610 INF: Cycle	43	Tile	14	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:50:20.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36694, sync = True, waitForSettling = True)
17-03-17 20:50:20.998 -07 000000610 INF: Z Motor: Moving to -0.167974 mm, started at -0.174942 mm, distance = 6.97 um
17-03-17 20:50:20.998 -07 000000610 INF: FPGA: Xmit ZDACW 36694\n [Z Motor]
17-03-17 20:50:20.998 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:50:21.008 -07 000000610 INF: FPGA: 'ZDACW 36694' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:50:21.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:21.018 -07 000000382 INF: FPGA: Recv ZDACR 36694
17-03-17 20:50:21.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:50:21.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:50:21.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:21.178 -07 000000415 INF: FPGA: Recv ZSGSRD 35442
17-03-17 20:50:21.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:21.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:21.188 -07 000000448 INF: FPGA: Recv ZSGSRD 35441
17-03-17 20:50:21.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:21.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:21.208 -07 000000448 INF: FPGA: Recv ZSGSRD 35443
17-03-17 20:50:21.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:50:21.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:21.218 -07 000000448 INF: FPGA: Recv ZSGSRD 35440
17-03-17 20:50:21.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:21.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:21.228 -07 000000458 INF: FPGA: Recv ZSGSRD 35444
17-03-17 20:50:21.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:21.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:21.238 -07 000000458 INF: FPGA: Recv ZSGSRD 35437
17-03-17 20:50:21.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:21.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:21.248 -07 000000502 INF: FPGA: Recv ZSGSRD 35435
17-03-17 20:50:21.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:21.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:21.258 -07 000000502 INF: FPGA: Recv ZSGSRD 35437
17-03-17 20:50:21.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:21.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:21.268 -07 000000502 INF: FPGA: Recv ZSGSRD 35433
17-03-17 20:50:21.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:21.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:21.278 -07 000000462 INF: FPGA: Recv ZSGSRD 35436
17-03-17 20:50:21.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:21.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:21.288 -07 000000502 INF: FPGA: Recv ZPIEZORD 31365
17-03-17 20:50:21.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:21.298 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.599 V. Piezo Error = -9.0 V.
17-03-17 20:50:21.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35439 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35438 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35433 (-167.1 uncal um), Max = 35444 (-167.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:50:21.298 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35439, posNoise = 5, negNoise = 6
17-03-17 20:50:21.298 -07 000000610 INF: Z Motor: After move to -0.167974, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:21.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 299 ms)
17-03-17 20:50:21.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:21.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:21.298 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:21.308 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:50:21.318 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:21.318 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:50:21.318 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:21.318 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:50:21.318 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:50:21.318 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:50:21.318 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:50:21.318 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:50:21.318 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:50:21.318 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:50:21.368 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:50:21.368 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:50:21.378 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 58 ms.
17-03-17 20:50:21.378 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 79 ms.
17-03-17 20:50:21.378 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:50:21.378 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 79 ms.
17-03-17 20:50:21.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 36871 150\n [Camera]
17-03-17 20:50:21.518 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.042558,
17-03-17 20:50:21.588 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:50:21.818 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:50:21.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:50:22.008 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:50:22.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:50:22.008 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:22.008 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:22.008 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 20:50:22.008 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:50:22.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:50:22.008 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:22.008 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:22.008 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1144753880, 0x0, 418435064) start.
17-03-17 20:50:22.198 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36871 807
17-03-17 20:50:22.348 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:50:22.388 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1144753880, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:50:22.398 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:50:22.398 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:22.398 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:22.398 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:50:22.398 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:50:22.398 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:22.408 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:22.408 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:50:22.408 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:50:22.548 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:50:22.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:50:22.548 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:22.548 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:22.548 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 20:50:22.548 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:50:22.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:50:22.558 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:22.558 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:22.558 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:50:22.738 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-17 20:50:22.738 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:50:22.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 36871 150' command took 2 ms to send, 1348 ms to get response, and 1358 ms overall
17-03-17 20:50:22.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:50:22.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.167991006103002. ------
17-03-17 20:50:22.858 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:22.858 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17461 mm
17-03-17 20:50:22.858 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:50:22.868 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:50:22.868 -07 000000448 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 20:50:22.868 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:22.868 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38143, sync = True, waitForSettling = False)
17-03-17 20:50:22.868 -07 000000576 INF: Z Motor: Moving to -0.174607 mm, started at -0.167991 mm, distance = -6.62 um
17-03-17 20:50:22.878 -07 000000576 INF: FPGA: Xmit ZDACW 38143\n [Z Motor]
17-03-17 20:50:22.948 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:50:22.948 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:50:22.948 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:22.948 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:50:22.948 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:50:22.948 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:22.958 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:22.958 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:50:22.958 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:50:22.958 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:50:22.968 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:22.968 -07 000000608 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:50:22.968 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:50:22.968 -07 000000576 INF: FPGA: 'ZDACW 38143' command took 0 ms to send, 84 ms to get response, and 103 ms overall
17-03-17 20:50:22.968 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 104 ms to get response, and 107 ms overall
17-03-17 20:50:22.968 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:22.968 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 94 ms to get response, and 104 ms overall
17-03-17 20:50:22.968 -07 000000448 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:22.968 -07 000000448 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:50:22.968 -07 000000448 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:50:22.968 -07 000000608 INF: FPGA: Recv ZDACR 38143
17-03-17 20:50:22.978 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:50:22.978 -07 000000576 INF: Z Motor: MoveAbsStepped took 108 ms (did NOT wait for settling yet))
17-03-17 20:50:22.978 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:50:22.988 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:50:23.188 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:50:23.188 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 217 ms overall
17-03-17 20:50:23.348 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 20:50:23.348 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-17 20:50:23.388 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:23.388 -07 000000576 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:50:23.398 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:50:23.398 -07 000000448 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:23.398 -07 000000448 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:50:23.398 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.844 mm, average velocity = 2.208 mm/sec
17-03-17 20:50:24.348 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:24.348 -07 000000608 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:50:24.358 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:24.358 -07 000000448 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:24.378 -07 000000448 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:50:24.378 -07 000000448 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:50:24.378 -07 000000448 INF: Y Motor: Moved to 71.5190 after 1513 ms (table move)
17-03-17 20:50:24.378 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174607 mm (DAC = 38143)
17-03-17 20:50:24.378 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:24.388 -07 000000415 INF: FPGA: Recv ZSGSRD 36477
17-03-17 20:50:24.388 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:50:24.388 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:24.388 -07 000000608 INF: FPGA: Recv ZSGSRD 36469
17-03-17 20:50:24.398 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:50:24.398 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:24.398 -07 000000415 INF: FPGA: Recv ZSGSRD 36466
17-03-17 20:50:24.408 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:24.408 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:24.408 -07 000000576 INF: FPGA: Recv ZSGSRD 36470
17-03-17 20:50:24.418 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:24.418 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:24.418 -07 000000448 INF: FPGA: Recv ZSGSRD 36473
17-03-17 20:50:24.428 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:24.428 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:24.428 -07 000000608 INF: FPGA: Recv ZSGSRD 36477
17-03-17 20:50:24.438 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:24.438 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:24.438 -07 000000448 INF: FPGA: Recv ZSGSRD 36466
17-03-17 20:50:24.448 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:24.448 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:24.448 -07 000000415 INF: FPGA: Recv ZSGSRD 36465
17-03-17 20:50:24.458 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:24.458 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:24.458 -07 000000608 INF: FPGA: Recv ZSGSRD 36461
17-03-17 20:50:24.468 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:24.468 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:24.468 -07 000000415 INF: FPGA: Recv ZSGSRD 36476
17-03-17 20:50:24.478 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:24.478 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:24.478 -07 000000415 INF: FPGA: Recv ZPIEZORD 32754
17-03-17 20:50:24.488 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:24.488 -07 000000458 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.820 V. Piezo Error = -8.2 V.
17-03-17 20:50:24.488 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36470 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36470 (-173.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36461 (-173.7 uncal um), Max = 36477 (-173.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:50:24.488 -07 000000458 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36470, posNoise = 7, negNoise = 9
17-03-17 20:50:24.488 -07 000000458 INF: Z Motor: After move to -0.174607, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:24.488 -07 000000458 INF: Z Motor: Settle wait time = 1516 ms, measure time = 102 ms (allowed 150 ms), total time = 1618 ms
17-03-17 20:50:24.488 -07 000000458 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 20:50:24.538 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1672 ms
17-03-17 20:50:24.538 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:50:24.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:24.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:24.538 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:24.538 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:24.538 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:50:24.538 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:24.538 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:50:24.538 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:50:24.548 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:50:24.548 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:50:24.548 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:50:24.548 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:50:24.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:50:24.598 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:50:24.798 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:50:24.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:50:24.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:50:24.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:50:24.838 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:50:24.838 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 20:50:24.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 20:50:24.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:50:24.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:24.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:50:24.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:50:24.938 -07 000000608 INF: Autofocus start
17-03-17 20:50:24.938 -07 000000608 INF: MeasureProfile start
17-03-17 20:50:24.938 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:24.938 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:24.948 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:50:24.948 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:50:24.948 -07 000000608 INF: MeasureProfile done
17-03-17 20:50:24.948 -07 000000608 INF: X=-32  Z correction [um]=-0.2344
17-03-17 20:50:24.948 -07 000000608 INF: Autofocus finished
17-03-17 20:50:25.148 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:50:25.148 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:50:25.148 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.174614368821157. ----------
17-03-17 20:50:25.148 -07 000000610 INF: Cycle	43	Tile	15	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:50:25.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36604, sync = True, waitForSettling = True)
17-03-17 20:50:25.158 -07 000000610 INF: Z Motor: Moving to -0.167562 mm, started at -0.174614 mm, distance = 7.05 um
17-03-17 20:50:25.158 -07 000000610 INF: FPGA: Xmit ZDACW 36604\n [Z Motor]
17-03-17 20:50:25.158 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:50:25.168 -07 000000610 INF: FPGA: 'ZDACW 36604' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:50:25.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:25.168 -07 000000576 INF: FPGA: Recv ZDACR 36604
17-03-17 20:50:25.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:25.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:50:25.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:25.328 -07 000000576 INF: FPGA: Recv ZSGSRD 35370
17-03-17 20:50:25.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:25.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:25.338 -07 000000415 INF: FPGA: Recv ZSGSRD 35376
17-03-17 20:50:25.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:25.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:25.348 -07 000000433 INF: FPGA: Recv ZSGSRD 35376
17-03-17 20:50:25.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:25.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:25.358 -07 000000459 INF: FPGA: Recv ZSGSRD 35379
17-03-17 20:50:25.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:25.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:25.368 -07 000000458 INF: FPGA: Recv ZSGSRD 35367
17-03-17 20:50:25.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:25.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:25.378 -07 000000458 INF: FPGA: Recv ZSGSRD 35375
17-03-17 20:50:25.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:25.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:25.388 -07 000000459 INF: FPGA: Recv ZSGSRD 35374
17-03-17 20:50:25.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:25.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:25.398 -07 000000448 INF: FPGA: Recv ZSGSRD 35368
17-03-17 20:50:25.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:25.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:25.408 -07 000000458 INF: FPGA: Recv ZSGSRD 35366
17-03-17 20:50:25.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:25.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:25.418 -07 000000608 INF: FPGA: Recv ZSGSRD 35372
17-03-17 20:50:25.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:25.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:25.428 -07 000000433 INF: FPGA: Recv ZPIEZORD 31308
17-03-17 20:50:25.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:25.438 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.585 V. Piezo Error = -9.0 V.
17-03-17 20:50:25.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35372 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35373 (-166.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35366 (-166.7 uncal um), Max = 35379 (-166.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:50:25.438 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35372, posNoise = 7, negNoise = 6
17-03-17 20:50:25.438 -07 000000610 INF: Z Motor: After move to -0.167562, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:25.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:50:25.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:25.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:25.438 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:25.438 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:25.438 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:50:25.438 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:50:25.438 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:50:25.438 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:25.438 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:50:25.438 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:50:25.438 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:50:25.438 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:50:25.448 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:50:25.448 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:50:25.448 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:50:25.448 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:50:25.458 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:50:25.458 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:50:25.458 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:50:25.458 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:50:25.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 36781 150\n [Camera]
17-03-17 20:50:25.658 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:50:26.078 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:50:26.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:50:26.078 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:26.078 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:50:26.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:50:26.078 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:26.078 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:26.078 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:50:26.088 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:26.088 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:50:26.268 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36781 807
17-03-17 20:50:26.418 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:50:26.478 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:50:26.478 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:50:26.478 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:26.478 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:26.478 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:50:26.478 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:50:26.478 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:50:26.478 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:26.488 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:26.488 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:50:26.618 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:50:26.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:50:26.618 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:26.628 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:50:26.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:50:26.628 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:26.628 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:26.628 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:50:26.628 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:26.628 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:50:26.818 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:50:26.818 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:50:26.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 36781 150' command took 2 ms to send, 1351 ms to get response, and 1358 ms overall
17-03-17 20:50:26.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:50:26.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167560583889504. ------
17-03-17 20:50:26.818 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:26.818 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17401 mm
17-03-17 20:50:26.818 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:50:26.928 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:50:26.928 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:26.938 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 113 ms overall
17-03-17 20:50:26.938 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:50:26.938 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38012, sync = True, waitForSettling = False)
17-03-17 20:50:26.938 -07 000000502 INF: Z Motor: Moving to -0.174008 mm, started at -0.167561 mm, distance = -6.45 um
17-03-17 20:50:26.938 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:50:26.938 -07 000000433 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 20:50:26.948 -07 000000502 INF: FPGA: Xmit ZDACW 38012\n [Z Motor]
17-03-17 20:50:26.958 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:50:26.968 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:27.028 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:50:27.028 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:50:27.028 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:27.028 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:50:27.028 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:50:27.028 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:27.028 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:27.028 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:27.028 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:50:27.038 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:50:27.038 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.049392,
17-03-17 20:50:27.038 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:50:27.038 -07 000000429 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:50:27.038 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 68 ms to get response, and 104 ms overall
17-03-17 20:50:27.038 -07 000000433 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:27.038 -07 000000433 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:50:27.038 -07 000000433 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:50:27.038 -07 000000502 INF: FPGA: 'ZDACW 38012' command took 0 ms to send, 88 ms to get response, and 104 ms overall
17-03-17 20:50:27.048 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:50:27.058 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:27.058 -07 000000429 INF: FPGA: Recv ZDACR 38012
17-03-17 20:50:27.068 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:50:27.068 -07 000000502 INF: Z Motor: MoveAbsStepped took 126 ms (did NOT wait for settling yet))
17-03-17 20:50:27.158 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:50:27.158 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:50:27.418 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 20:50:27.418 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-17 20:50:27.458 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:27.458 -07 000000415 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:50:27.468 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:50:27.468 -07 000000433 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:27.468 -07 000000433 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:50:27.468 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.844 mm, average velocity = 2.226 mm/sec
17-03-17 20:50:28.418 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:28.418 -07 000000429 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:50:28.428 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:28.428 -07 000000433 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:28.448 -07 000000433 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:50:28.448 -07 000000433 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:50:28.448 -07 000000433 INF: Y Motor: Moved to 72.3496 after 1510 ms (table move)
17-03-17 20:50:28.448 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174008 mm (DAC = 38012)
17-03-17 20:50:28.448 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:28.458 -07 000000429 INF: FPGA: Recv ZSGSRD 36379
17-03-17 20:50:28.458 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:50:28.458 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:28.458 -07 000000415 INF: FPGA: Recv ZSGSRD 36377
17-03-17 20:50:28.468 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:28.468 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:28.468 -07 000000502 INF: FPGA: Recv ZSGSRD 36379
17-03-17 20:50:28.478 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:28.478 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:28.478 -07 000000459 INF: FPGA: Recv ZSGSRD 36372
17-03-17 20:50:28.488 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:28.488 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:28.488 -07 000000502 INF: FPGA: Recv ZSGSRD 36378
17-03-17 20:50:28.498 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:28.498 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:28.498 -07 000000429 INF: FPGA: Recv ZSGSRD 36378
17-03-17 20:50:28.508 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:28.508 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:28.508 -07 000000415 INF: FPGA: Recv ZSGSRD 36379
17-03-17 20:50:28.518 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:28.518 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:28.518 -07 000000433 INF: FPGA: Recv ZSGSRD 36372
17-03-17 20:50:28.528 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:28.528 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:28.528 -07 000000502 INF: FPGA: Recv ZSGSRD 36369
17-03-17 20:50:28.538 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:28.538 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:28.538 -07 000000502 INF: FPGA: Recv ZSGSRD 36375
17-03-17 20:50:28.548 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:28.548 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:28.548 -07 000000502 INF: FPGA: Recv ZPIEZORD 32629
17-03-17 20:50:28.558 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:28.558 -07 000000458 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.800 V. Piezo Error = -8.3 V.
17-03-17 20:50:28.558 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36376 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36378 (-173.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36369 (-173.1 uncal um), Max = 36379 (-173.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:50:28.558 -07 000000458 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36376, posNoise = 3, negNoise = 7
17-03-17 20:50:28.558 -07 000000458 INF: Z Motor: After move to -0.174008, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:28.558 -07 000000458 INF: Z Motor: Settle wait time = 1513 ms, measure time = 104 ms (allowed 150 ms), total time = 1617 ms
17-03-17 20:50:28.558 -07 000000458 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:50:28.608 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1783 ms
17-03-17 20:50:28.608 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:50:28.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:28.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:28.608 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:28.608 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:28.608 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:50:28.608 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:28.608 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:50:28.608 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:50:28.618 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:50:28.618 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:50:28.628 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 20:50:28.628 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 20:50:28.628 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:50:28.668 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 20:50:28.868 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 20:50:28.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 20:50:28.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:50:28.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:50:28.908 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:50:28.908 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 20:50:28.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:50:28.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:50:28.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:28.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:50:28.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:50:29.008 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:29.008 -07 000000415 INF: Autofocus start
17-03-17 20:50:29.008 -07 000000415 INF: MeasureProfile start
17-03-17 20:50:29.008 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:29.018 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:50:29.018 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:50:29.028 -07 000000415 INF: MeasureProfile done
17-03-17 20:50:29.028 -07 000000415 INF: X=-32  Z correction [um]=-0.2344
17-03-17 20:50:29.028 -07 000000415 INF: Autofocus finished
17-03-17 20:50:29.218 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:50:29.218 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:50:29.218 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.174010492879832. ----------
17-03-17 20:50:29.218 -07 000000610 INF: Cycle	43	Tile	16	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:50:29.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36473, sync = True, waitForSettling = True)
17-03-17 20:50:29.228 -07 000000610 INF: Z Motor: Moving to -0.166963 mm, started at -0.174010 mm, distance = 7.05 um
17-03-17 20:50:29.228 -07 000000610 INF: FPGA: Xmit ZDACW 36473\n [Z Motor]
17-03-17 20:50:29.228 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:50:29.238 -07 000000610 INF: FPGA: 'ZDACW 36473' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:50:29.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:29.238 -07 000000502 INF: FPGA: Recv ZDACR 36473
17-03-17 20:50:29.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:29.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:50:29.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:29.398 -07 000000415 INF: FPGA: Recv ZSGSRD 35276
17-03-17 20:50:29.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:29.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:29.408 -07 000000459 INF: FPGA: Recv ZSGSRD 35277
17-03-17 20:50:29.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:29.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:29.418 -07 000000433 INF: FPGA: Recv ZSGSRD 35279
17-03-17 20:50:29.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:29.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:29.428 -07 000000502 INF: FPGA: Recv ZSGSRD 35279
17-03-17 20:50:29.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:29.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:29.438 -07 000000415 INF: FPGA: Recv ZSGSRD 35289
17-03-17 20:50:29.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:29.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:29.448 -07 000000459 INF: FPGA: Recv ZSGSRD 35282
17-03-17 20:50:29.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:29.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:29.458 -07 000000429 INF: FPGA: Recv ZSGSRD 35278
17-03-17 20:50:29.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:29.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:29.468 -07 000000541 INF: FPGA: Recv ZSGSRD 35276
17-03-17 20:50:29.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:29.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:29.478 -07 000000433 INF: FPGA: Recv ZSGSRD 35276
17-03-17 20:50:29.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:29.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:29.488 -07 000000459 INF: FPGA: Recv ZSGSRD 35286
17-03-17 20:50:29.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:29.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:29.498 -07 000000429 INF: FPGA: Recv ZPIEZORD 31189
17-03-17 20:50:29.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:29.508 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.565 V. Piezo Error = -9.0 V.
17-03-17 20:50:29.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35280 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35278 (-166.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35276 (-166.1 uncal um), Max = 35289 (-166.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:50:29.508 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35280, posNoise = 9, negNoise = 4
17-03-17 20:50:29.508 -07 000000610 INF: Z Motor: After move to -0.166963, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:29.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:50:29.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:29.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:29.508 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:29.508 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:50:29.508 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:29.508 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:29.508 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:50:29.508 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:50:29.508 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:50:29.508 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:50:29.508 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:50:29.508 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:50:29.518 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:50:29.518 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:50:29.518 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:50:29.518 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:50:29.518 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:50:29.518 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:50:29.528 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:50:29.528 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:50:29.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 36650 150\n [Camera]
17-03-17 20:50:29.728 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:50:30.148 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:50:30.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:50:30.148 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:30.148 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:50:30.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:50:30.148 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:30.158 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:30.158 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:50:30.158 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:30.158 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:50:30.338 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36650 806
17-03-17 20:50:30.488 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:50:30.538 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:50:30.538 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:50:30.538 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:30.538 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:30.538 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:50:30.538 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:50:30.538 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:30.538 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:30.538 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:50:30.548 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:50:30.698 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:50:30.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:50:30.698 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:30.698 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:50:30.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:50:30.698 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:30.698 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:30.698 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1073909352, 0x0, 391868352) start.
17-03-17 20:50:30.708 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:30.708 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:50:30.888 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:50:30.888 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:50:30.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 36650 150' command took 2 ms to send, 1352 ms to get response, and 1358 ms overall
17-03-17 20:50:30.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:50:30.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.166969556372462. ------
17-03-17 20:50:30.888 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:30.888 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17352 mm
17-03-17 20:50:30.888 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:50:30.888 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:50:30.888 -07 000000502 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 20:50:30.898 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:30.898 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:50:30.898 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:30.898 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37907, sync = True, waitForSettling = False)
17-03-17 20:50:30.898 -07 000000501 INF: Z Motor: Moving to -0.173527 mm, started at -0.166970 mm, distance = -6.56 um
17-03-17 20:50:30.898 -07 000000608 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:50:30.908 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:30.908 -07 000000502 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:30.908 -07 000000501 INF: FPGA: Xmit ZDACW 37907\n [Z Motor]
17-03-17 20:50:30.908 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:50:30.908 -07 000000502 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:50:30.908 -07 000000502 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:50:30.918 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:50:30.918 -07 000000501 INF: FPGA: 'ZDACW 37907' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:50:30.928 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:50:30.938 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:30.938 -07 000000626 INF: FPGA: Recv ZDACR 37907
17-03-17 20:50:30.948 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:50:30.948 -07 000000501 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 20:50:31.098 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 1073909352, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:50:31.098 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:50:31.098 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:31.098 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:50:31.098 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:50:31.098 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:31.098 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:31.098 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 20:50:31.108 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:31.108 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:50:31.118 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:50:31.118 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:50:31.298 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:50:31.298 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:50:31.338 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:31.338 -07 000000415 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:50:31.348 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:50:31.348 -07 000000502 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:31.348 -07 000000502 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 20:50:31.348 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.843 mm, average velocity = 2.145 mm/sec
17-03-17 20:50:31.818 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:50:31.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:50:32.298 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:32.298 -07 000000448 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:50:32.308 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:32.308 -07 000000502 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:32.328 -07 000000502 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:50:32.328 -07 000000502 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:50:32.328 -07 000000502 INF: Y Motor: Moved to 73.1763 after 1434 ms (table move)
17-03-17 20:50:32.328 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173527 mm (DAC = 37907)
17-03-17 20:50:32.328 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:32.338 -07 000000459 INF: FPGA: Recv ZSGSRD 36311
17-03-17 20:50:32.338 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:50:32.338 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:32.338 -07 000000626 INF: FPGA: Recv ZSGSRD 36298
17-03-17 20:50:32.348 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:32.348 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:32.348 -07 000000448 INF: FPGA: Recv ZSGSRD 36303
17-03-17 20:50:32.358 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:32.358 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:32.358 -07 000000501 INF: FPGA: Recv ZSGSRD 36297
17-03-17 20:50:32.368 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:32.368 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:32.368 -07 000000502 INF: FPGA: Recv ZSGSRD 36309
17-03-17 20:50:32.378 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:32.378 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:32.378 -07 000000502 INF: FPGA: Recv ZSGSRD 36311
17-03-17 20:50:32.388 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:32.388 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:32.388 -07 000000501 INF: FPGA: Recv ZSGSRD 36309
17-03-17 20:50:32.398 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:50:32.398 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:32.398 -07 000000501 INF: FPGA: Recv ZSGSRD 36303
17-03-17 20:50:32.408 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:32.418 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:32.418 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.041198,
17-03-17 20:50:32.418 -07 000000502 INF: FPGA: Recv ZSGSRD 36302
17-03-17 20:50:32.428 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:50:32.438 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:32.438 -07 000000501 INF: FPGA: Recv ZSGSRD 36304
17-03-17 20:50:32.448 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:50:32.458 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:32.458 -07 000000459 INF: FPGA: Recv ZPIEZORD 32557
17-03-17 20:50:32.468 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:50:32.468 -07 000000541 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.784 V. Piezo Error = -8.3 V.
17-03-17 20:50:32.468 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36305 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36304 (-172.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36297 (-172.6 uncal um), Max = 36311 (-172.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:50:32.468 -07 000000541 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36305, posNoise = 6, negNoise = 8
17-03-17 20:50:32.468 -07 000000541 INF: Z Motor: After move to -0.173527, error = -0.000027, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:32.468 -07 000000541 INF: Z Motor: Settle wait time = 1436 ms, measure time = 134 ms (allowed 150 ms), total time = 1570 ms
17-03-17 20:50:32.468 -07 000000541 INF: Z Motor: Waiting extra 16 ms after reading position to reach expected total of 150 ms
17-03-17 20:50:32.488 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 20:50:32.488 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:50:32.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:32.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:32.488 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:32.488 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:50:32.488 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:32.488 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:32.488 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:50:32.488 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:50:32.498 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:50:32.498 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:50:32.498 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:50:32.498 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:50:32.508 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:50:32.548 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:50:32.748 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:50:32.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:50:32.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:50:32.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) start.
17-03-17 20:50:32.788 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:50:32.788 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 20:50:32.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:50:32.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:50:32.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:32.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:50:32.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:50:32.888 -07 000000448 INF: Autofocus start
17-03-17 20:50:32.888 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:32.888 -07 000000448 INF: MeasureProfile start
17-03-17 20:50:32.888 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:32.898 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:50:32.898 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:50:32.908 -07 000000448 INF: MeasureProfile done
17-03-17 20:50:32.908 -07 000000448 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:50:32.908 -07 000000448 INF: Autofocus finished
17-03-17 20:50:33.098 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:50:33.098 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:50:33.098 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.173554373817767. ----------
17-03-17 20:50:33.098 -07 000000610 INF: Cycle	43	Tile	17	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:50:33.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36421, sync = True, waitForSettling = True)
17-03-17 20:50:33.108 -07 000000610 INF: Z Motor: Moving to -0.166725 mm, started at -0.173554 mm, distance = 6.83 um
17-03-17 20:50:33.108 -07 000000610 INF: FPGA: Xmit ZDACW 36421\n [Z Motor]
17-03-17 20:50:33.108 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:50:33.118 -07 000000610 INF: FPGA: 'ZDACW 36421' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:50:33.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:33.118 -07 000000459 INF: FPGA: Recv ZDACR 36421
17-03-17 20:50:33.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:33.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:50:33.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:33.288 -07 000000501 INF: FPGA: Recv ZSGSRD 35247
17-03-17 20:50:33.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 8 ms to send, 4 ms to get response, and 14 ms overall
17-03-17 20:50:33.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:33.288 -07 000000541 INF: FPGA: Recv ZSGSRD 35237
17-03-17 20:50:33.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:50:33.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:33.298 -07 000000502 INF: FPGA: Recv ZSGSRD 35246
17-03-17 20:50:33.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:33.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:33.308 -07 000000459 INF: FPGA: Recv ZSGSRD 35237
17-03-17 20:50:33.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:33.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:33.318 -07 000000501 INF: FPGA: Recv ZSGSRD 35245
17-03-17 20:50:33.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:33.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:33.328 -07 000000502 INF: FPGA: Recv ZSGSRD 35243
17-03-17 20:50:33.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:33.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:33.338 -07 000000541 INF: FPGA: Recv ZSGSRD 35244
17-03-17 20:50:33.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:33.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:33.348 -07 000000502 INF: FPGA: Recv ZSGSRD 35240
17-03-17 20:50:33.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:33.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:33.358 -07 000000459 INF: FPGA: Recv ZSGSRD 35241
17-03-17 20:50:33.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:33.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:33.368 -07 000000502 INF: FPGA: Recv ZSGSRD 35243
17-03-17 20:50:33.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:33.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:33.378 -07 000000459 INF: FPGA: Recv ZPIEZORD 31147
17-03-17 20:50:33.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:33.388 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -9.0 V.
17-03-17 20:50:33.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35242 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35243 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35237 (-165.8 uncal um), Max = 35247 (-165.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:50:33.388 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35242, posNoise = 5, negNoise = 5
17-03-17 20:50:33.388 -07 000000610 INF: Z Motor: After move to -0.166725, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:33.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:50:33.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:33.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:33.388 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:33.388 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:33.388 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:50:33.388 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:33.388 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:50:33.388 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:50:33.388 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:50:33.388 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:50:33.388 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:50:33.388 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:50:33.398 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:50:33.398 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:50:33.398 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:50:33.398 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:50:33.408 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:50:33.408 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:50:33.408 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:50:33.408 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 20:50:33.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 36598 150\n [Camera]
17-03-17 20:50:33.608 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:50:34.038 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:50:34.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:50:34.038 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:34.038 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:34.038 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 20:50:34.038 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:50:34.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:50:34.038 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:34.038 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:34.038 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1144753880, 0x0, 418435064) start.
17-03-17 20:50:34.228 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36598 806
17-03-17 20:50:34.378 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:50:34.428 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:50:34.428 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:50:34.428 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:34.438 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1144753880, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:50:34.438 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:50:34.438 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:34.438 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:34.438 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:50:34.438 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:34.448 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:50:34.578 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:50:34.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:50:34.578 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:34.578 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:34.578 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 20:50:34.578 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:50:34.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:50:34.578 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:34.578 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:34.578 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:50:34.768 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-17 20:50:34.778 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:50:34.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 36598 150' command took 2 ms to send, 1350 ms to get response, and 1360 ms overall
17-03-17 20:50:34.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:50:34.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166725436311075. ------
17-03-17 20:50:34.778 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:34.778 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17305 mm
17-03-17 20:50:34.778 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:50:34.778 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:50:34.778 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 37804, sync = True, waitForSettling = False)
17-03-17 20:50:34.778 -07 000000433 INF: Z Motor: Moving to -0.173056 mm, started at -0.166725 mm, distance = -6.33 um
17-03-17 20:50:34.778 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:34.778 -07 000000448 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 20:50:34.788 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:50:34.788 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:34.788 -07 000000502 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:50:34.898 -07 000000433 INF: FPGA: Xmit ZDACW 37804\n [Z Motor]
17-03-17 20:50:34.898 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-17 20:50:34.898 -07 000000448 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:34.898 -07 000000448 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:50:34.898 -07 000000448 INF: Y Motor: Moving 1354 steps-33
17-03-17 20:50:34.898 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:50:34.908 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:50:34.908 -07 000000433 INF: FPGA: 'ZDACW 37804' command took 0 ms to send, 0 ms to get response, and 121 ms overall
17-03-17 20:50:34.918 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:50:34.928 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:34.928 -07 000000502 INF: FPGA: Recv ZDACR 37804
17-03-17 20:50:34.938 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:50:34.938 -07 000000433 INF: Z Motor: MoveAbsStepped took 152 ms (did NOT wait for settling yet))
17-03-17 20:50:34.978 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:50:34.978 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:50:34.978 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:34.978 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:50:34.978 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:50:34.978 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:34.988 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:34.988 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:50:34.988 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:50:34.988 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:50:35.118 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:50:35.118 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 332 ms overall
17-03-17 20:50:35.278 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 20:50:35.278 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 20:50:35.308 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:35.318 -07 000000502 INF: FPGA: Recv YRDPOS 151568
17-03-17 20:50:35.318 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:50:35.318 -07 000000448 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:35.318 -07 000000448 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 20:50:35.318 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.846 mm, average velocity = 2.221 mm/sec
17-03-17 20:50:36.268 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:36.268 -07 000000382 INF: FPGA: Recv YRDPOS 151568
17-03-17 20:50:36.278 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:36.278 -07 000000448 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:36.288 -07 000000448 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:50:36.288 -07 000000448 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:50:36.288 -07 000000448 INF: Y Motor: Moved to 74.0078 after 1508 ms (table move)
17-03-17 20:50:36.298 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173056 mm (DAC = 37804)
17-03-17 20:50:36.298 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:36.298 -07 000000448 INF: FPGA: Recv ZSGSRD 36229
17-03-17 20:50:36.308 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:36.308 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:36.308 -07 000000448 INF: FPGA: Recv ZSGSRD 36223
17-03-17 20:50:36.318 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:36.318 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:36.318 -07 000000448 INF: FPGA: Recv ZSGSRD 36229
17-03-17 20:50:36.328 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:36.328 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:36.328 -07 000000541 INF: FPGA: Recv ZSGSRD 36228
17-03-17 20:50:36.338 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:36.338 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:36.338 -07 000000501 INF: FPGA: Recv ZSGSRD 36229
17-03-17 20:50:36.348 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:36.348 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:36.348 -07 000000501 INF: FPGA: Recv ZSGSRD 36236
17-03-17 20:50:36.358 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:36.358 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:36.358 -07 000000501 INF: FPGA: Recv ZSGSRD 36227
17-03-17 20:50:36.368 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:36.368 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:36.368 -07 000000501 INF: FPGA: Recv ZSGSRD 36222
17-03-17 20:50:36.378 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:36.378 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:36.378 -07 000000541 INF: FPGA: Recv ZSGSRD 36230
17-03-17 20:50:36.388 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:36.388 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:36.388 -07 000000541 INF: FPGA: Recv ZSGSRD 36224
17-03-17 20:50:36.398 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:36.398 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:36.398 -07 000000541 INF: FPGA: Recv ZPIEZORD 32504
17-03-17 20:50:36.408 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:36.408 -07 000000626 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.769 V. Piezo Error = -8.2 V.
17-03-17 20:50:36.408 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36228 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36228 (-172.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36222 (-172.1 uncal um), Max = 36236 (-172.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:50:36.408 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36228, posNoise = 8, negNoise = 6
17-03-17 20:50:36.408 -07 000000626 INF: Z Motor: After move to -0.173056, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:36.408 -07 000000626 INF: Z Motor: Settle wait time = 1511 ms, measure time = 111 ms (allowed 150 ms), total time = 1622 ms
17-03-17 20:50:36.408 -07 000000626 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 20:50:36.448 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1664 ms
17-03-17 20:50:36.448 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:50:36.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:36.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:36.448 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:36.448 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:50:36.448 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:36.448 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:36.448 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:50:36.458 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:50:36.458 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:50:36.458 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:50:36.458 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:50:36.458 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:50:36.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:50:36.508 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:50:36.708 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:50:36.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:50:36.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:50:36.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:50:36.748 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:50:36.748 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:50:36.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:50:36.818 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:50:36.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:50:36.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:36.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:50:36.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:50:36.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:50:36.848 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:36.848 -07 000000424 INF: Autofocus start
17-03-17 20:50:36.848 -07 000000424 INF: MeasureProfile start
17-03-17 20:50:36.848 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:36.858 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:50:36.858 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:50:36.868 -07 000000424 INF: MeasureProfile done
17-03-17 20:50:36.868 -07 000000424 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:50:36.868 -07 000000424 INF: Autofocus finished
17-03-17 20:50:37.058 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:50:37.058 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:50:37.058 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.173059709482851. ----------
17-03-17 20:50:37.058 -07 000000610 INF: Cycle	43	Tile	18	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:50:37.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36336, sync = True, waitForSettling = True)
17-03-17 20:50:37.068 -07 000000610 INF: Z Motor: Moving to -0.166336 mm, started at -0.173060 mm, distance = 6.72 um
17-03-17 20:50:37.068 -07 000000610 INF: FPGA: Xmit ZDACW 36336\n [Z Motor]
17-03-17 20:50:37.068 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:50:37.078 -07 000000610 INF: FPGA: 'ZDACW 36336' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:37.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:37.078 -07 000000576 INF: FPGA: Recv ZDACR 36336
17-03-17 20:50:37.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:37.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:50:37.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:37.238 -07 000000576 INF: FPGA: Recv ZSGSRD 35179
17-03-17 20:50:37.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:37.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:37.248 -07 000000626 INF: FPGA: Recv ZSGSRD 35187
17-03-17 20:50:37.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:37.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:37.258 -07 000000626 INF: FPGA: Recv ZSGSRD 35186
17-03-17 20:50:37.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:50:37.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:37.268 -07 000000626 INF: FPGA: Recv ZSGSRD 35184
17-03-17 20:50:37.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:37.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:37.278 -07 000000626 INF: FPGA: Recv ZSGSRD 35178
17-03-17 20:50:37.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:37.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:37.288 -07 000000462 INF: FPGA: Recv ZSGSRD 35182
17-03-17 20:50:37.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:37.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:37.298 -07 000000576 INF: FPGA: Recv ZSGSRD 35189
17-03-17 20:50:37.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:37.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:37.308 -07 000000424 INF: FPGA: Recv ZSGSRD 35187
17-03-17 20:50:37.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:37.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:37.318 -07 000000576 INF: FPGA: Recv ZSGSRD 35180
17-03-17 20:50:37.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:37.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:37.328 -07 000000576 INF: FPGA: Recv ZSGSRD 35182
17-03-17 20:50:37.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:37.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:37.338 -07 000000424 INF: FPGA: Recv ZPIEZORD 31090
17-03-17 20:50:37.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:37.348 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.545 V. Piezo Error = -9.0 V.
17-03-17 20:50:37.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35183 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35183 (-165.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35178 (-165.4 uncal um), Max = 35189 (-165.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:50:37.348 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35183, posNoise = 6, negNoise = 5
17-03-17 20:50:37.348 -07 000000610 INF: Z Motor: After move to -0.166336, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:37.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:50:37.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:37.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:37.348 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:50:37.348 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:37.348 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:37.348 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:50:37.348 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:50:37.348 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:37.348 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:50:37.348 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:50:37.348 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:50:37.348 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:50:37.358 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:50:37.358 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:50:37.358 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:50:37.358 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:50:37.358 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:50:37.358 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:50:37.358 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:50:37.358 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:50:37.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 36513 150\n [Camera]
17-03-17 20:50:37.568 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:50:37.808 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.004458,
17-03-17 20:50:37.988 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:50:37.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:50:37.988 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:37.988 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:50:37.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:50:37.988 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:37.998 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:37.998 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:50:37.998 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:37.998 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:50:38.178 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36513 806
17-03-17 20:50:38.328 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:50:38.368 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:50:38.368 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:50:38.368 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:38.378 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:50:38.378 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:50:38.378 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:38.378 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:38.378 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:50:38.378 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:38.388 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:50:38.538 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:50:38.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:50:38.538 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:38.538 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:50:38.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:50:38.538 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:38.538 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:38.538 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:50:38.548 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:38.548 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:50:38.838 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-17 20:50:38.838 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:50:38.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 36513 150' command took 2 ms to send, 1461 ms to get response, and 1468 ms overall
17-03-17 20:50:38.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:50:38.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.166346407794711. ------
17-03-17 20:50:38.838 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:38.838 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17282 mm
17-03-17 20:50:38.838 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:50:38.838 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:50:38.838 -07 000000458 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 20:50:38.838 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:38.848 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:50:38.848 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:50:38.848 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37754, sync = True, waitForSettling = False)
17-03-17 20:50:38.848 -07 000000424 INF: Z Motor: Moving to -0.172827 mm, started at -0.166346 mm, distance = -6.48 um
17-03-17 20:50:38.858 -07 000000424 INF: FPGA: Xmit ZDACW 37754\n [Z Motor]
17-03-17 20:50:38.858 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:50:38.868 -07 000000424 INF: FPGA: 'ZDACW 37754' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:50:38.868 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:38.868 -07 000000429 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:50:38.878 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:50:38.878 -07 000000458 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:38.878 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:38.878 -07 000000458 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:50:38.878 -07 000000458 INF: Y Motor: Moving 1351 steps-30
17-03-17 20:50:38.878 -07 000000429 INF: FPGA: Recv ZDACR 37754
17-03-17 20:50:38.888 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:50:38.888 -07 000000424 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 20:50:38.888 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:50:38.928 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 20:50:38.928 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:50:38.928 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:38.938 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:38.938 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:50:38.938 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:50:38.938 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:38.938 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:38.938 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:50:38.938 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:50:39.048 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:50:39.048 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:50:39.258 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 20:50:39.258 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 20:50:39.288 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:39.288 -07 000000382 INF: FPGA: Recv YRDPOS 153256
17-03-17 20:50:39.298 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:50:39.298 -07 000000458 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:39.298 -07 000000458 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 20:50:39.298 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.194 mm/sec
17-03-17 20:50:40.248 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:40.248 -07 000000429 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:50:40.258 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:40.258 -07 000000458 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:40.268 -07 000000458 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:50:40.268 -07 000000458 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:50:40.268 -07 000000458 INF: Y Motor: Moved to 74.8325 after 1426 ms (table move)
17-03-17 20:50:40.268 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172827 mm (DAC = 37754)
17-03-17 20:50:40.268 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:40.278 -07 000000415 INF: FPGA: Recv ZSGSRD 36193
17-03-17 20:50:40.288 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:40.288 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:40.288 -07 000000458 INF: FPGA: Recv ZSGSRD 36188
17-03-17 20:50:40.298 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:40.298 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:40.298 -07 000000415 INF: FPGA: Recv ZSGSRD 36191
17-03-17 20:50:40.308 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:40.308 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:40.308 -07 000000458 INF: FPGA: Recv ZSGSRD 36194
17-03-17 20:50:40.318 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:40.318 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:40.318 -07 000000424 INF: FPGA: Recv ZSGSRD 36192
17-03-17 20:50:40.328 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:40.328 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:40.328 -07 000000502 INF: FPGA: Recv ZSGSRD 36198
17-03-17 20:50:40.338 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:40.338 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:40.338 -07 000000415 INF: FPGA: Recv ZSGSRD 36198
17-03-17 20:50:40.348 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:40.348 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:40.348 -07 000000458 INF: FPGA: Recv ZSGSRD 36197
17-03-17 20:50:40.358 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:40.358 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:40.358 -07 000000462 INF: FPGA: Recv ZSGSRD 36186
17-03-17 20:50:40.368 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:40.368 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:40.368 -07 000000458 INF: FPGA: Recv ZSGSRD 36187
17-03-17 20:50:40.378 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:40.378 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:40.378 -07 000000576 INF: FPGA: Recv ZPIEZORD 32448
17-03-17 20:50:40.388 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:50:40.388 -07 000000541 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.761 V. Piezo Error = -8.3 V.
17-03-17 20:50:40.388 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36192 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36192 (-171.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36186 (-171.9 uncal um), Max = 36198 (-172.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:50:40.388 -07 000000541 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36192, posNoise = 6, negNoise = 6
17-03-17 20:50:40.388 -07 000000541 INF: Z Motor: After move to -0.172827, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:40.388 -07 000000541 INF: Z Motor: Settle wait time = 1428 ms, measure time = 111 ms (allowed 150 ms), total time = 1539 ms
17-03-17 20:50:40.388 -07 000000541 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 20:50:40.428 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 20:50:40.428 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:50:40.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:40.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:40.428 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:40.428 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:40.428 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:50:40.428 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:40.428 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:50:40.428 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:50:40.438 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:50:40.438 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:50:40.438 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:50:40.438 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:50:40.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:50:40.488 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:50:40.688 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:50:40.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:50:40.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:50:40.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:50:40.728 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:50:40.728 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 20:50:40.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 20:50:40.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:50:40.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:40.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:50:40.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:50:40.828 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:40.828 -07 000000576 INF: Autofocus start
17-03-17 20:50:40.828 -07 000000576 INF: MeasureProfile start
17-03-17 20:50:40.848 -07 000000576 INF: MeasureProfile done
17-03-17 20:50:40.848 -07 000000576 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 20:50:40.848 -07 000000576 INF: Autofocus finished
17-03-17 20:50:40.848 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:40.848 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 12 ms to get response, and 16 ms overall
17-03-17 20:50:40.848 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:50:41.048 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:50:41.048 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 20:50:41.048 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.172828437845748. ----------
17-03-17 20:50:41.058 -07 000000610 INF: Cycle	43	Tile	19	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:50:41.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36233, sync = True, waitForSettling = True)
17-03-17 20:50:41.058 -07 000000610 INF: Z Motor: Moving to -0.165864 mm, started at -0.172828 mm, distance = 6.96 um
17-03-17 20:50:41.058 -07 000000610 INF: FPGA: Xmit ZDACW 36233\n [Z Motor]
17-03-17 20:50:41.058 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:50:41.068 -07 000000610 INF: FPGA: 'ZDACW 36233' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:50:41.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:41.068 -07 000000608 INF: FPGA: Recv ZDACR 36233
17-03-17 20:50:41.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:41.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:50:41.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:41.228 -07 000000576 INF: FPGA: Recv ZSGSRD 35113
17-03-17 20:50:41.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:41.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:41.238 -07 000000576 INF: FPGA: Recv ZSGSRD 35107
17-03-17 20:50:41.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 91 ms to get response, and 101 ms overall
17-03-17 20:50:41.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:41.348 -07 000000608 INF: FPGA: Recv ZSGSRD 35113
17-03-17 20:50:41.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:50:41.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:41.348 -07 000000608 INF: FPGA: Recv ZSGSRD 35116
17-03-17 20:50:41.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:41.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:41.358 -07 000000608 INF: FPGA: Recv ZSGSRD 35104
17-03-17 20:50:41.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:41.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:41.368 -07 000000608 INF: FPGA: Recv ZSGSRD 35104
17-03-17 20:50:41.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:41.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:41.378 -07 000000608 INF: FPGA: Recv ZSGSRD 35106
17-03-17 20:50:41.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:41.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:41.388 -07 000000608 INF: FPGA: Recv ZSGSRD 35113
17-03-17 20:50:41.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:41.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:41.398 -07 000000608 INF: FPGA: Recv ZSGSRD 35111
17-03-17 20:50:41.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:41.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:41.408 -07 000000608 INF: FPGA: Recv ZSGSRD 35108
17-03-17 20:50:41.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:41.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:41.418 -07 000000608 INF: FPGA: Recv ZPIEZORD 31030
17-03-17 20:50:41.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:41.428 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.529 V. Piezo Error = -9.0 V.
17-03-17 20:50:41.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35110 (-165.0 uncal um), Error = 0.9 uncal um, Median = 35110 (-165.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35104 (-165.0 uncal um), Max = 35116 (-165.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:50:41.428 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35110, posNoise = 6, negNoise = 6
17-03-17 20:50:41.428 -07 000000610 INF: Z Motor: After move to -0.165864, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:41.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 368 ms)
17-03-17 20:50:41.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:41.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:41.428 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:41.428 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:50:41.428 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:41.428 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:50:41.428 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:50:41.428 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:41.428 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:50:41.428 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:50:41.428 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:50:41.428 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:50:41.438 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:50:41.438 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:50:41.438 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:50:41.438 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:50:41.448 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:50:41.448 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:50:41.448 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:50:41.448 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:50:41.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 36410 150\n [Camera]
17-03-17 20:50:41.648 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:50:41.818 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:50:41.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:50:42.078 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 615
17-03-17 20:50:42.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 615
17-03-17 20:50:42.078 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:42.078 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 616
17-03-17 20:50:42.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 616
17-03-17 20:50:42.078 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:42.078 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:42.078 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:50:42.088 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:42.088 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:50:42.268 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36410 806
17-03-17 20:50:42.418 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:50:42.458 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:50:42.458 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:50:42.458 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:42.458 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:50:42.458 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:50:42.458 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:42.458 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:42.468 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:42.468 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:50:42.468 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:50:42.618 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:50:42.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:50:42.618 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:50:42.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:50:42.618 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:42.618 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:42.628 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:42.628 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:50:42.628 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:42.628 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1073909352, 0x0, 391868352) start.
17-03-17 20:50:42.808 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-17 20:50:42.808 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:50:42.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 36410 150' command took 2 ms to send, 1347 ms to get response, and 1358 ms overall
17-03-17 20:50:43.028 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:50:43.028 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:50:43.028 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:43.028 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1073909352, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:50:43.028 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:50:43.028 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:43.038 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:43.038 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:43.038 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 20:50:43.038 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:50:43.048 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 20:50:43.078 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:50:43.078 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:50:43.118 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-17 20:50:43.128 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 20:50:43.128 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:50:43.128 -07 000000415 INF: FPGA: Recv EMCUR 
17-03-17 20:50:43.138 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:50:43.138 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 20:50:43.168 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.005817,
17-03-17 20:50:43.638 -07 000000608 INF: FPGA: Recv EMIN
17-03-17 20:50:43.638 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 20:50:43.638 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 20:50:43.638 -07 000000541 INF: FPGA: Recv EMCUR 
17-03-17 20:50:43.648 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:50:43.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:50:43.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.165877440308362. ------
17-03-17 20:50:43.648 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:43.648 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14037 mm
17-03-17 20:50:43.648 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:50:43.648 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:50:43.648 -07 000000382 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 20:50:43.648 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30663, sync = True, waitForSettling = False)
17-03-17 20:50:43.648 -07 000000502 INF: Z Motor: Moving to -0.140366 mm, started at -0.165877 mm, distance = 25.51 um
17-03-17 20:50:43.658 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:43.658 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:50:43.658 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:43.658 -07 000000433 INF: FPGA: Recv YRDPOS 153258
17-03-17 20:50:43.668 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:43.668 -07 000000382 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:43.668 -07 000000502 INF: FPGA: Xmit ZDACW 30663\n [Z Motor]
17-03-17 20:50:43.668 -07 000000382 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 20:50:43.668 -07 000000382 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:50:43.668 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:50:43.678 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:50:43.678 -07 000000502 INF: FPGA: 'ZDACW 30663' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:50:43.688 -07 000000382 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:50:43.698 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:44.238 -07 000000433 INF: FPGA: Recv ZDACR 30663
17-03-17 20:50:44.238 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:50:44.238 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 550 ms to get response, and 579 ms overall
17-03-17 20:50:44.238 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 530 ms to get response, and 560 ms overall
17-03-17 20:50:44.238 -07 000000502 INF: Z Motor: MoveAbsStepped took 581 ms (did NOT wait for settling yet))
17-03-17 20:50:45.308 -07 000000415 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 20:50:45.308 -07 000000382 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1645 ms overall
17-03-17 20:50:45.308 -07 000000382 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:50:45.308 -07 000000382 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 20:50:45.308 -07 000000382 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1645 ms, distance = 14.920 mm, average velocity = 9.070 mm/sec
17-03-17 20:50:46.818 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:50:46.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:50:48.158 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:48.158 -07 000000433 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:50:48.168 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:48.168 -07 000000382 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:48.198 -07 000000382 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:50:48.198 -07 000000382 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 20:50:48.198 -07 000000382 INF: Y Motor: Moved to 59.9111 after 4541 ms
17-03-17 20:50:48.198 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140366 mm (DAC = 30663)
17-03-17 20:50:48.198 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:48.198 -07 000000501 INF: FPGA: Recv ZSGSRD 31146
17-03-17 20:50:48.208 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:50:48.218 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:48.218 -07 000000501 INF: FPGA: Recv ZSGSRD 31140
17-03-17 20:50:48.228 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:50:48.228 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:48.228 -07 000000415 INF: FPGA: Recv ZSGSRD 31141
17-03-17 20:50:48.238 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:48.238 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:48.238 -07 000000501 INF: FPGA: Recv ZSGSRD 31140
17-03-17 20:50:48.248 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:48.248 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:48.248 -07 000000626 INF: FPGA: Recv ZSGSRD 31137
17-03-17 20:50:48.258 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:48.258 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:48.258 -07 000000433 INF: FPGA: Recv ZSGSRD 31139
17-03-17 20:50:48.268 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:48.268 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:48.268 -07 000000382 INF: FPGA: Recv ZSGSRD 31140
17-03-17 20:50:48.278 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:48.278 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:48.278 -07 000000626 INF: FPGA: Recv ZSGSRD 31141
17-03-17 20:50:48.288 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:48.288 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:48.288 -07 000000501 INF: FPGA: Recv ZSGSRD 31143
17-03-17 20:50:48.298 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:48.298 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:48.298 -07 000000626 INF: FPGA: Recv ZSGSRD 31144
17-03-17 20:50:48.308 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:48.308 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:48.308 -07 000000382 INF: FPGA: Recv ZPIEZORD 26823
17-03-17 20:50:48.318 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:48.318 -07 000000429 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.679 V. Piezo Error = -9.5 V.
17-03-17 20:50:48.318 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.4 um, Read 10 ADC samples: Avg = 31141 (-139.6 uncal um), Error = 0.8 uncal um, Median = 31140 (-139.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 31137 (-139.6 uncal um), Max = 31146 (-139.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:50:48.318 -07 000000429 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31141, posNoise = 5, negNoise = 4
17-03-17 20:50:48.318 -07 000000429 INF: Z Motor: After move to -0.140366, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:48.318 -07 000000429 INF: Z Motor: Settle wait time = 4544 ms, measure time = 116 ms (allowed 150 ms), total time = 4660 ms
17-03-17 20:50:48.318 -07 000000429 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms
17-03-17 20:50:48.358 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4703 ms
17-03-17 20:50:48.358 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:50:48.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:48.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:48.358 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:48.358 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:48.358 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:50:48.358 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:48.368 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:50:48.368 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:50:48.388 -07 000000608 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 20:50:48.388 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:50:48.388 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:50:48.388 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:50:48.398 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:50:48.398 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 32 ms.
17-03-17 20:50:48.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:50:48.438 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:50:48.528 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.989471,
17-03-17 20:50:48.638 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:50:48.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:50:48.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:50:48.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1109331616, 0x0, 559484976) start.
17-03-17 20:50:48.678 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:50:48.678 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:50:48.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 20:50:48.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1109331616, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:50:48.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:48.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:50:48.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:50:48.778 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:48.778 -07 000000429 INF: Image SNR check: start
17-03-17 20:50:48.778 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:48.788 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:50:48.788 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:50:48.798 -07 000000429 INF: Image SNR check: pass  [peak (Max-Min)=63.91]
17-03-17 20:50:48.798 -07 000000429 INF: Autofocus start
17-03-17 20:50:48.798 -07 000000429 INF: MeasureProfile start
17-03-17 20:50:48.808 -07 000000429 INF: MeasureProfile done
17-03-17 20:50:48.808 -07 000000429 INF: X=8  Z correction [um]=0.01453479
17-03-17 20:50:48.808 -07 000000429 INF: Autofocus finished
17-03-17 20:50:48.988 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:50:48.988 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:50:48.988 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140379742317713. ----------
17-03-17 20:50:48.988 -07 000000610 INF: Cycle	43	Tile	1	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:50:48.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29179, sync = True, waitForSettling = True)
17-03-17 20:50:48.998 -07 000000610 INF: Z Motor: Moving to -0.133573 mm, started at -0.140380 mm, distance = 6.81 um
17-03-17 20:50:48.998 -07 000000610 INF: FPGA: Xmit ZDACW 29179\n [Z Motor]
17-03-17 20:50:48.998 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:50:49.008 -07 000000610 INF: FPGA: 'ZDACW 29179' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:50:49.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:49.008 -07 000000382 INF: FPGA: Recv ZDACR 29179
17-03-17 20:50:49.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:49.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:50:49.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:49.168 -07 000000608 INF: FPGA: Recv ZSGSRD 30084
17-03-17 20:50:49.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:49.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:49.178 -07 000000429 INF: FPGA: Recv ZSGSRD 30071
17-03-17 20:50:49.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:49.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:49.188 -07 000000501 INF: FPGA: Recv ZSGSRD 30086
17-03-17 20:50:49.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:49.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:49.198 -07 000000433 INF: FPGA: Recv ZSGSRD 30081
17-03-17 20:50:49.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:49.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:49.208 -07 000000626 INF: FPGA: Recv ZSGSRD 30081
17-03-17 20:50:49.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:49.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:49.218 -07 000000382 INF: FPGA: Recv ZSGSRD 30085
17-03-17 20:50:49.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:49.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:49.228 -07 000000415 INF: FPGA: Recv ZSGSRD 30079
17-03-17 20:50:49.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:49.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:49.238 -07 000000501 INF: FPGA: Recv ZSGSRD 30088
17-03-17 20:50:49.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:49.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:49.248 -07 000000429 INF: FPGA: Recv ZSGSRD 30076
17-03-17 20:50:49.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:49.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:49.258 -07 000000608 INF: FPGA: Recv ZSGSRD 30078
17-03-17 20:50:49.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:49.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:49.268 -07 000000501 INF: FPGA: Recv ZPIEZORD 25734
17-03-17 20:50:49.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:49.278 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.452 V. Piezo Error = -9.5 V.
17-03-17 20:50:49.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30081 (-132.8 uncal um), Error = 0.8 uncal um, Median = 30081 (-132.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30071 (-132.7 uncal um), Max = 30088 (-132.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:50:49.278 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30081, posNoise = 7, negNoise = 10
17-03-17 20:50:49.278 -07 000000610 INF: Z Motor: After move to -0.133573, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:49.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:50:49.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:49.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:49.278 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:49.278 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:49.278 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:50:49.278 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:49.278 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:50:49.278 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:50:49.278 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:50:49.278 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:50:49.278 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:50:49.278 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:50:49.288 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:50:49.288 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:50:49.298 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:50:49.298 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:50:49.298 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 20:50:49.298 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:50:49.308 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:50:49.308 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:50:49.318 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:50:49.318 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 20:50:49.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 29356 150\n [Camera]
17-03-17 20:50:49.518 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:50:49.938 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:50:49.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:50:49.938 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:49.938 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:49.938 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 20:50:49.938 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:50:49.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:50:49.938 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:49.938 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:49.938 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1144753880, 0x0, 418435064) start.
17-03-17 20:50:50.128 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29356 806
17-03-17 20:50:50.278 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:50:50.318 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 20:50:50.318 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:50:50.318 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:50.318 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1144753880, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:50:50.318 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:50:50.318 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:50.328 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:50:50.328 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:50:50.328 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:50:50.328 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:50:50.478 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:50:50.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:50:50.478 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:50.478 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:50.478 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 20:50:50.488 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:50:50.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:50:50.488 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:50.488 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:50.488 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:50:50.668 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:50:50.678 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:50:50.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 29356 150' command took 2 ms to send, 1352 ms to get response, and 1360 ms overall
17-03-17 20:50:50.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:50:50.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133570077447446. ------
17-03-17 20:50:50.788 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:50.788 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.14009 mm
17-03-17 20:50:50.788 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:50:50.798 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:50.798 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:50:50.798 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:50:50.798 -07 000000626 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 20:50:50.798 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30602, sync = True, waitForSettling = False)
17-03-17 20:50:50.798 -07 000000429 INF: Z Motor: Moving to -0.140087 mm, started at -0.133570 mm, distance = -6.52 um
17-03-17 20:50:50.798 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:50:50.808 -07 000000429 INF: FPGA: Xmit ZDACW 30602\n [Z Motor]
17-03-17 20:50:50.808 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:50:50.818 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:50.818 -07 000000429 INF: FPGA: 'ZDACW 30602' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:50:50.818 -07 000000608 INF: FPGA: Recv YRDPOS 122698
17-03-17 20:50:50.828 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:50:50.828 -07 000000626 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:50.828 -07 000000626 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:50:50.828 -07 000000626 INF: Y Motor: Moving 1330 steps2
17-03-17 20:50:50.828 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:50.828 -07 000000608 INF: FPGA: Recv ZDACR 30602
17-03-17 20:50:50.838 -07 000000429 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:50:50.838 -07 000000429 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 20:50:50.838 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:50:50.878 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 20:50:50.878 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:50:50.878 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:50.878 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:50:50.878 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:50:50.878 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:50.878 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:50.888 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:50:50.888 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:50:50.888 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:50:50.998 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:50:50.998 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 195 ms to get response, and 203 ms overall
17-03-17 20:50:51.208 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:50:51.208 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:50:51.238 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:51.248 -07 000000382 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:50:51.248 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:50:51.248 -07 000000626 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:51.248 -07 000000626 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:50:51.248 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.831 mm, average velocity = 2.143 mm/sec
17-03-17 20:50:51.818 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:50:51.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:50:52.198 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:52.198 -07 000000415 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:50:52.208 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:52.208 -07 000000626 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:52.228 -07 000000626 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:50:52.228 -07 000000626 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:50:52.228 -07 000000626 INF: Y Motor: Moved to 60.7329 after 1432 ms (table move)
17-03-17 20:50:52.228 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140087 mm (DAC = 30602)
17-03-17 20:50:52.228 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:52.238 -07 000000608 INF: FPGA: Recv ZSGSRD 31099
17-03-17 20:50:52.238 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:50:52.238 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:52.238 -07 000000626 INF: FPGA: Recv ZSGSRD 31092
17-03-17 20:50:52.248 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:52.248 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:52.248 -07 000000448 INF: FPGA: Recv ZSGSRD 31095
17-03-17 20:50:52.258 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:52.258 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:52.258 -07 000000608 INF: FPGA: Recv ZSGSRD 31103
17-03-17 20:50:52.268 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:52.268 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:52.268 -07 000000429 INF: FPGA: Recv ZSGSRD 31097
17-03-17 20:50:52.278 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:52.278 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:52.278 -07 000000608 INF: FPGA: Recv ZSGSRD 31097
17-03-17 20:50:52.288 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:52.288 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:52.288 -07 000000626 INF: FPGA: Recv ZSGSRD 31093
17-03-17 20:50:52.298 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:52.298 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:52.298 -07 000000626 INF: FPGA: Recv ZSGSRD 31095
17-03-17 20:50:52.308 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:52.308 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:52.308 -07 000000433 INF: FPGA: Recv ZSGSRD 31098
17-03-17 20:50:52.318 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:52.318 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:52.318 -07 000000501 INF: FPGA: Recv ZSGSRD 31087
17-03-17 20:50:52.328 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:52.328 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:52.328 -07 000000458 INF: FPGA: Recv ZPIEZORD 27069
17-03-17 20:50:52.338 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:52.338 -07 000000462 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.670 V. Piezo Error = -8.9 V.
17-03-17 20:50:52.338 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.1 um, Read 10 ADC samples: Avg = 31096 (-139.3 uncal um), Error = 0.8 uncal um, Median = 31096 (-139.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31087 (-139.2 uncal um), Max = 31103 (-139.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:50:52.338 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31096, posNoise = 7, negNoise = 9
17-03-17 20:50:52.338 -07 000000462 INF: Z Motor: After move to -0.140087, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:52.338 -07 000000462 INF: Z Motor: Settle wait time = 1435 ms, measure time = 103 ms (allowed 150 ms), total time = 1538 ms
17-03-17 20:50:52.338 -07 000000462 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:50:52.388 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 20:50:52.388 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:50:52.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:52.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:52.388 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:52.388 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:50:52.388 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:52.388 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:52.388 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:50:52.388 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:50:52.388 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:50:52.388 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:50:52.408 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:50:52.408 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 20:50:52.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:50:52.448 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:50:52.648 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:50:52.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:50:52.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:50:52.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:50:52.688 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:50:52.688 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 20:50:52.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 20:50:52.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:50:52.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:52.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:50:52.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:50:52.888 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:52.888 -07 000000608 INF: Autofocus start
17-03-17 20:50:52.888 -07 000000608 INF: MeasureProfile start
17-03-17 20:50:52.888 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:52.898 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:50:52.898 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:50:52.898 -07 000000608 INF: MeasureProfile done
17-03-17 20:50:52.898 -07 000000608 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:50:52.898 -07 000000608 INF: Autofocus finished
17-03-17 20:50:53.098 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:50:53.098 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:50:53.098 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.140090652771334. ----------
17-03-17 20:50:53.098 -07 000000610 INF: Cycle	43	Tile	2	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:50:53.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29109, sync = True, waitForSettling = True)
17-03-17 20:50:53.108 -07 000000610 INF: Z Motor: Moving to -0.133252 mm, started at -0.140091 mm, distance = 6.84 um
17-03-17 20:50:53.108 -07 000000610 INF: FPGA: Xmit ZDACW 29109\n [Z Motor]
17-03-17 20:50:53.108 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:50:53.118 -07 000000610 INF: FPGA: 'ZDACW 29109' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:53.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:53.118 -07 000000626 INF: FPGA: Recv ZDACR 29109
17-03-17 20:50:53.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:53.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:50:53.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:53.278 -07 000000415 INF: FPGA: Recv ZSGSRD 30033
17-03-17 20:50:53.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:53.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:53.288 -07 000000608 INF: FPGA: Recv ZSGSRD 30033
17-03-17 20:50:53.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:53.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:53.298 -07 000000415 INF: FPGA: Recv ZSGSRD 30029
17-03-17 20:50:53.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:53.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:53.308 -07 000000626 INF: FPGA: Recv ZSGSRD 30033
17-03-17 20:50:53.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:50:53.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:53.318 -07 000000462 INF: FPGA: Recv ZSGSRD 30032
17-03-17 20:50:53.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:53.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:53.328 -07 000000429 INF: FPGA: Recv ZSGSRD 30032
17-03-17 20:50:53.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:53.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:53.338 -07 000000462 INF: FPGA: Recv ZSGSRD 30035
17-03-17 20:50:53.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:53.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:53.348 -07 000000608 INF: FPGA: Recv ZSGSRD 30034
17-03-17 20:50:53.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:53.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:53.358 -07 000000415 INF: FPGA: Recv ZSGSRD 30033
17-03-17 20:50:53.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:53.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:53.368 -07 000000608 INF: FPGA: Recv ZSGSRD 30029
17-03-17 20:50:53.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:53.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:53.378 -07 000000626 INF: FPGA: Recv ZPIEZORD 25708
17-03-17 20:50:53.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:53.388 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.442 V. Piezo Error = -9.5 V.
17-03-17 20:50:53.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30032 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30033 (-132.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30029 (-132.4 uncal um), Max = 30035 (-132.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:50:53.388 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30032, posNoise = 3, negNoise = 3
17-03-17 20:50:53.388 -07 000000610 INF: Z Motor: After move to -0.133252, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:53.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:50:53.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:53.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:53.388 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:53.388 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:50:53.388 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:53.388 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:50:53.388 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:53.388 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:50:53.388 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:50:53.388 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:50:53.388 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:50:53.388 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:50:53.398 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:50:53.398 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:50:53.398 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:50:53.398 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:50:53.408 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:50:53.408 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:50:53.408 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:50:53.408 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:50:53.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 29286 150\n [Camera]
17-03-17 20:50:53.608 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:50:53.888 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.962185,
17-03-17 20:50:54.038 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:50:54.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:50:54.038 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:54.038 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:50:54.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:50:54.038 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:54.038 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:54.038 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:50:54.038 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:54.038 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:50:54.228 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29286 806
17-03-17 20:50:54.378 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 959
17-03-17 20:50:54.438 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:50:54.438 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:50:54.438 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:54.438 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:50:54.438 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:50:54.438 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:54.438 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:54.438 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:50:54.438 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:50:54.448 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:50:54.578 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1159
17-03-17 20:50:54.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1159
17-03-17 20:50:54.578 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:54.578 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1159
17-03-17 20:50:54.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1159
17-03-17 20:50:54.588 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:54.588 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:54.588 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:50:54.698 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:54.698 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:50:54.768 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:50:54.768 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:50:54.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 29286 150' command took 2 ms to send, 1347 ms to get response, and 1357 ms overall
17-03-17 20:50:54.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:50:54.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.1332552910525. ------
17-03-17 20:50:54.778 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:54.778 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13973 mm
17-03-17 20:50:54.778 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:50:54.778 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30524, sync = True, waitForSettling = False)
17-03-17 20:50:54.778 -07 000000576 INF: Z Motor: Moving to -0.139730 mm, started at -0.133255 mm, distance = -6.47 um
17-03-17 20:50:54.778 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:50:54.778 -07 000000608 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 20:50:54.778 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:54.788 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:50:54.788 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:54.788 -07 000000541 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:50:54.798 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:50:54.798 -07 000000608 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:54.798 -07 000000576 INF: FPGA: Xmit ZDACW 30524\n [Z Motor]
17-03-17 20:50:54.798 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:50:54.798 -07 000000608 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:50:54.798 -07 000000608 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:50:54.808 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:50:54.808 -07 000000576 INF: FPGA: 'ZDACW 30524' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:50:54.818 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:50:54.828 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:54.828 -07 000000502 INF: FPGA: Recv ZDACR 30524
17-03-17 20:50:54.838 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:50:54.838 -07 000000576 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 20:50:55.008 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:50:55.008 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 20:50:55.098 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 509 ms.
17-03-17 20:50:55.098 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-17 20:50:55.098 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:55.098 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:50:55.098 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:50:55.098 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:55.108 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:55.108 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-17 20:50:55.108 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:55.108 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 526 ms.
17-03-17 20:50:55.188 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 20:50:55.188 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 20:50:55.228 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:55.228 -07 000000576 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:50:55.238 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:50:55.238 -07 000000608 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:55.238 -07 000000608 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:50:55.238 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.840 mm, average velocity = 2.153 mm/sec
17-03-17 20:50:56.188 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:56.188 -07 000000458 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:50:56.198 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:50:56.198 -07 000000608 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:56.218 -07 000000608 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:50:56.218 -07 000000608 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:50:56.218 -07 000000608 INF: Y Motor: Moved to 61.5640 after 1436 ms (table move)
17-03-17 20:50:56.218 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139730 mm (DAC = 30524)
17-03-17 20:50:56.218 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:56.218 -07 000000608 INF: FPGA: Recv ZSGSRD 31045
17-03-17 20:50:56.228 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:50:56.228 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:56.228 -07 000000608 INF: FPGA: Recv ZSGSRD 31043
17-03-17 20:50:56.238 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:56.238 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:56.238 -07 000000502 INF: FPGA: Recv ZSGSRD 31035
17-03-17 20:50:56.248 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:56.248 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:56.248 -07 000000502 INF: FPGA: Recv ZSGSRD 31048
17-03-17 20:50:56.258 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:56.258 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:56.258 -07 000000502 INF: FPGA: Recv ZSGSRD 31051
17-03-17 20:50:56.268 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:56.268 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:56.268 -07 000000502 INF: FPGA: Recv ZSGSRD 31046
17-03-17 20:50:56.278 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:56.278 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:56.278 -07 000000608 INF: FPGA: Recv ZSGSRD 31035
17-03-17 20:50:56.288 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:56.288 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:56.288 -07 000000576 INF: FPGA: Recv ZSGSRD 31033
17-03-17 20:50:56.298 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:56.298 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:56.298 -07 000000576 INF: FPGA: Recv ZSGSRD 31043
17-03-17 20:50:56.308 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:56.308 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:56.308 -07 000000576 INF: FPGA: Recv ZSGSRD 31040
17-03-17 20:50:56.318 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:56.318 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:56.318 -07 000000576 INF: FPGA: Recv ZPIEZORD 27045
17-03-17 20:50:56.328 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:56.328 -07 000000462 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.658 V. Piezo Error = -8.8 V.
17-03-17 20:50:56.328 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31042 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31043 (-138.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 31033 (-138.9 uncal um), Max = 31051 (-139.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:50:56.328 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31042, posNoise = 9, negNoise = 9
17-03-17 20:50:56.328 -07 000000462 INF: Z Motor: After move to -0.139730, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:56.328 -07 000000462 INF: Z Motor: Settle wait time = 1440 ms, measure time = 104 ms (allowed 150 ms), total time = 1544 ms
17-03-17 20:50:56.328 -07 000000462 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:50:56.378 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 20:50:56.378 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:50:56.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:56.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:56.378 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:56.378 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:56.378 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:50:56.378 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:56.388 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:50:56.388 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:50:56.388 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:50:56.388 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:50:56.398 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:50:56.398 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:50:56.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:50:56.448 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:50:56.648 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:50:56.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:50:56.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:50:56.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:50:56.688 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:50:56.688 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 20:50:56.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 286 ms overall
17-03-17 20:50:56.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:50:56.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:56.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:50:56.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:50:56.788 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:56.788 -07 000000608 INF: Autofocus start
17-03-17 20:50:56.788 -07 000000608 INF: MeasureProfile start
17-03-17 20:50:56.788 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:56.798 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:50:56.798 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:50:56.798 -07 000000608 INF: MeasureProfile done
17-03-17 20:50:56.798 -07 000000608 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:50:56.798 -07 000000608 INF: Autofocus finished
17-03-17 20:50:56.818 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:50:56.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:50:56.998 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:50:56.998 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:50:56.998 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139743745315679. ----------
17-03-17 20:50:57.008 -07 000000610 INF: Cycle	43	Tile	3	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:50:57.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29019, sync = True, waitForSettling = True)
17-03-17 20:50:57.008 -07 000000610 INF: Z Motor: Moving to -0.132840 mm, started at -0.139744 mm, distance = 6.90 um
17-03-17 20:50:57.008 -07 000000610 INF: FPGA: Xmit ZDACW 29019\n [Z Motor]
17-03-17 20:50:57.008 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:50:57.018 -07 000000610 INF: FPGA: 'ZDACW 29019' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:50:57.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:57.018 -07 000000626 INF: FPGA: Recv ZDACR 29019
17-03-17 20:50:57.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:57.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:50:57.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:57.178 -07 000000576 INF: FPGA: Recv ZSGSRD 29966
17-03-17 20:50:57.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:57.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:57.188 -07 000000415 INF: FPGA: Recv ZSGSRD 29975
17-03-17 20:50:57.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:57.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:57.198 -07 000000458 INF: FPGA: Recv ZSGSRD 29968
17-03-17 20:50:57.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:57.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:57.208 -07 000000608 INF: FPGA: Recv ZSGSRD 29966
17-03-17 20:50:57.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:57.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:57.218 -07 000000424 INF: FPGA: Recv ZSGSRD 29966
17-03-17 20:50:57.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:57.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:57.228 -07 000000424 INF: FPGA: Recv ZSGSRD 29967
17-03-17 20:50:57.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:57.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:57.238 -07 000000424 INF: FPGA: Recv ZSGSRD 29972
17-03-17 20:50:57.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:57.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:57.248 -07 000000424 INF: FPGA: Recv ZSGSRD 29972
17-03-17 20:50:57.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:57.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:57.258 -07 000000458 INF: FPGA: Recv ZSGSRD 29970
17-03-17 20:50:57.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:57.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:50:57.268 -07 000000424 INF: FPGA: Recv ZSGSRD 29965
17-03-17 20:50:57.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:57.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:50:57.278 -07 000000626 INF: FPGA: Recv ZPIEZORD 25665
17-03-17 20:50:57.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:50:57.288 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.428 V. Piezo Error = -9.5 V.
17-03-17 20:50:57.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29969 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29968 (-132.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29965 (-132.0 uncal um), Max = 29975 (-132.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:50:57.288 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29969, posNoise = 6, negNoise = 4
17-03-17 20:50:57.288 -07 000000610 INF: Z Motor: After move to -0.132840, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:50:57.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:50:57.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:50:57.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:50:57.288 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:50:57.288 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:50:57.288 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:50:57.288 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:50:57.288 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:50:57.288 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:50:57.288 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:50:57.288 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:50:57.288 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:50:57.288 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:50:57.288 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:50:57.288 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:50:57.298 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:50:57.298 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:50:57.308 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:50:57.308 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:50:57.308 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:50:57.308 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:50:57.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 29196 150\n [Camera]
17-03-17 20:50:57.508 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 20:50:57.928 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:50:57.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:50:57.928 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:57.928 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:50:57.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:50:57.938 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:57.938 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:57.938 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:50:57.938 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:57.938 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:50:58.118 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29196 806
17-03-17 20:50:58.268 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:50:58.308 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 20:50:58.308 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:50:58.308 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:58.308 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:50:58.308 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:50:58.308 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:58.308 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:58.308 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:50:58.318 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:58.318 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:50:58.478 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:50:58.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:50:58.478 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:50:58.478 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:50:58.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:50:58.478 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:50:58.478 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:50:58.478 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1073909352, 0x0, 391868352) start.
17-03-17 20:50:58.488 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:50:58.488 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:50:58.668 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-17 20:50:58.668 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:50:58.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 29196 150' command took 2 ms to send, 1352 ms to get response, and 1358 ms overall
17-03-17 20:50:58.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:50:58.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132850565687569. ------
17-03-17 20:50:58.668 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:50:58.668 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13908 mm
17-03-17 20:50:58.668 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:50:58.678 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:50:58.678 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:50:58.678 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:50:58.678 -07 000000448 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 20:50:58.678 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:50:58.678 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30382, sync = True, waitForSettling = False)
17-03-17 20:50:58.678 -07 000000458 INF: Z Motor: Moving to -0.139080 mm, started at -0.132851 mm, distance = -6.23 um
17-03-17 20:50:58.688 -07 000000458 INF: FPGA: Xmit ZDACW 30382\n [Z Motor]
17-03-17 20:50:58.688 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:50:58.698 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:58.698 -07 000000458 INF: FPGA: 'ZDACW 30382' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:50:58.698 -07 000000433 INF: FPGA: Recv YRDPOS 126084
17-03-17 20:50:58.708 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:50:58.708 -07 000000448 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:58.708 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:50:58.708 -07 000000448 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:50:58.708 -07 000000448 INF: Y Motor: Moving 1341 steps-18
17-03-17 20:50:58.708 -07 000000502 INF: FPGA: Recv ZDACR 30382
17-03-17 20:50:58.718 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:50:58.718 -07 000000458 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 20:50:58.718 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:50:58.878 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 20:50:58.878 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:50:58.878 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:58.878 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1073909352, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:50:58.878 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:50:58.878 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:50:58.878 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:58.878 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:50:58.878 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 20:50:58.878 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:50:58.878 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:50:58.888 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:50:59.088 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:50:59.088 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 20:50:59.128 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:50:59.128 -07 000000433 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:50:59.138 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:50:59.138 -07 000000448 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:50:59.138 -07 000000448 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:50:59.138 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.839 mm, average velocity = 2.190 mm/sec
17-03-17 20:50:59.248 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.951279,
17-03-17 20:51:00.088 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:00.088 -07 000000502 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:51:00.098 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:00.098 -07 000000448 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:00.118 -07 000000448 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:51:00.118 -07 000000448 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:51:00.118 -07 000000448 INF: Y Motor: Moved to 62.3955 after 1442 ms (table move)
17-03-17 20:51:00.118 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139080 mm (DAC = 30382)
17-03-17 20:51:00.118 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:00.118 -07 000000448 INF: FPGA: Recv ZSGSRD 30943
17-03-17 20:51:00.128 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:51:00.128 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:00.128 -07 000000458 INF: FPGA: Recv ZSGSRD 30940
17-03-17 20:51:00.138 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:00.138 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:00.138 -07 000000541 INF: FPGA: Recv ZSGSRD 30940
17-03-17 20:51:00.148 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:00.148 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:00.148 -07 000000433 INF: FPGA: Recv ZSGSRD 30939
17-03-17 20:51:00.158 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:00.158 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:00.158 -07 000000433 INF: FPGA: Recv ZSGSRD 30937
17-03-17 20:51:00.168 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:00.168 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:00.168 -07 000000433 INF: FPGA: Recv ZSGSRD 30938
17-03-17 20:51:00.178 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:00.178 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:00.178 -07 000000433 INF: FPGA: Recv ZSGSRD 30937
17-03-17 20:51:00.188 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:00.188 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:00.188 -07 000000433 INF: FPGA: Recv ZSGSRD 30940
17-03-17 20:51:00.198 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:00.198 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:00.198 -07 000000433 INF: FPGA: Recv ZSGSRD 30939
17-03-17 20:51:00.208 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:00.208 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:00.208 -07 000000433 INF: FPGA: Recv ZSGSRD 30944
17-03-17 20:51:00.218 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:00.218 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:00.218 -07 000000433 INF: FPGA: Recv ZPIEZORD 26941
17-03-17 20:51:00.228 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:00.228 -07 000000608 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.636 V. Piezo Error = -8.8 V.
17-03-17 20:51:00.228 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30940 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30940 (-138.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30937 (-138.3 uncal um), Max = 30944 (-138.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:51:00.228 -07 000000608 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30940, posNoise = 4, negNoise = 3
17-03-17 20:51:00.228 -07 000000608 INF: Z Motor: After move to -0.139080, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:00.228 -07 000000608 INF: Z Motor: Settle wait time = 1444 ms, measure time = 105 ms (allowed 150 ms), total time = 1549 ms
17-03-17 20:51:00.228 -07 000000608 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:51:00.278 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 20:51:00.278 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:51:00.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:00.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:00.278 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:00.278 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:00.278 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:51:00.278 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:00.278 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:00.278 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:51:00.288 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:00.288 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:51:00.298 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:51:00.298 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:51:00.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:51:00.348 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:51:00.548 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:51:00.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:51:00.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:51:00.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) start.
17-03-17 20:51:00.578 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:51:00.588 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:51:00.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 20:51:00.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:51:00.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:00.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:51:00.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:51:00.688 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:00.688 -07 000000448 INF: Autofocus start
17-03-17 20:51:00.688 -07 000000448 INF: MeasureProfile start
17-03-17 20:51:00.688 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:00.698 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:51:00.698 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:51:00.698 -07 000000448 INF: MeasureProfile done
17-03-17 20:51:00.698 -07 000000448 INF: X=32  Z correction [um]=0.1299841
17-03-17 20:51:00.698 -07 000000448 INF: Autofocus finished
17-03-17 20:51:00.898 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:51:00.898 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:51:00.898 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139088475677219. ----------
17-03-17 20:51:00.898 -07 000000610 INF: Cycle	43	Tile	4	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:51:00.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28923, sync = True, waitForSettling = True)
17-03-17 20:51:00.908 -07 000000610 INF: Z Motor: Moving to -0.132401 mm, started at -0.139088 mm, distance = 6.69 um
17-03-17 20:51:00.908 -07 000000610 INF: FPGA: Xmit ZDACW 28923\n [Z Motor]
17-03-17 20:51:00.908 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:51:00.918 -07 000000610 INF: FPGA: 'ZDACW 28923' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:51:00.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:00.918 -07 000000608 INF: FPGA: Recv ZDACR 28923
17-03-17 20:51:00.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:00.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:51:01.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:01.078 -07 000000448 INF: FPGA: Recv ZSGSRD 29900
17-03-17 20:51:01.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:01.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:01.088 -07 000000501 INF: FPGA: Recv ZSGSRD 29902
17-03-17 20:51:01.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:51:01.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:01.098 -07 000000541 INF: FPGA: Recv ZSGSRD 29901
17-03-17 20:51:01.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:01.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:01.108 -07 000000448 INF: FPGA: Recv ZSGSRD 29896
17-03-17 20:51:01.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:01.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:01.118 -07 000000608 INF: FPGA: Recv ZSGSRD 29904
17-03-17 20:51:01.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:01.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:01.128 -07 000000501 INF: FPGA: Recv ZSGSRD 29897
17-03-17 20:51:01.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:01.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:01.138 -07 000000541 INF: FPGA: Recv ZSGSRD 29899
17-03-17 20:51:01.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:01.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:01.148 -07 000000448 INF: FPGA: Recv ZSGSRD 29904
17-03-17 20:51:01.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:01.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:01.158 -07 000000608 INF: FPGA: Recv ZSGSRD 29902
17-03-17 20:51:01.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:01.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:01.168 -07 000000541 INF: FPGA: Recv ZSGSRD 29898
17-03-17 20:51:01.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:01.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:01.178 -07 000000576 INF: FPGA: Recv ZPIEZORD 25592
17-03-17 20:51:01.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:01.188 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.413 V. Piezo Error = -9.5 V.
17-03-17 20:51:01.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29900 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29900 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29896 (-131.6 uncal um), Max = 29904 (-131.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:51:01.188 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29900, posNoise = 4, negNoise = 4
17-03-17 20:51:01.188 -07 000000610 INF: Z Motor: After move to -0.132401, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:01.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:51:01.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:01.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:01.188 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:01.188 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:01.188 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:51:01.188 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:01.188 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:51:01.188 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:51:01.188 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:01.188 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:51:01.188 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:51:01.188 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:51:01.198 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:01.198 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:51:01.198 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:51:01.198 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:51:01.208 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:51:01.208 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:51:01.208 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:51:01.208 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:51:01.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 29099 150\n [Camera]
17-03-17 20:51:01.408 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:51:01.818 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:51:01.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:51:01.828 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:51:01.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:51:01.828 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:01.828 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:01.828 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 20:51:01.828 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:51:01.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:51:01.828 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:01.828 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:01.828 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1144753880, 0x0, 418435064) start.
17-03-17 20:51:02.018 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29099 806
17-03-17 20:51:02.168 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:51:02.208 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:51:02.208 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:51:02.208 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:02.208 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1144753880, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:51:02.208 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:51:02.208 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:02.208 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:02.208 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:51:02.208 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:02.218 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:51:02.368 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:51:02.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:51:02.378 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:02.378 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:02.378 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 20:51:02.378 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:51:02.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:51:02.378 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:02.378 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:02.378 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:51:02.568 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:51:02.568 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:51:02.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 29099 150' command took 2 ms to send, 1351 ms to get response, and 1357 ms overall
17-03-17 20:51:02.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:51:02.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132407295049788. ------
17-03-17 20:51:02.688 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:02.688 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13909 mm
17-03-17 20:51:02.688 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:51:02.758 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:51:02.758 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:51:02.758 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:02.768 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:51:02.768 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:51:02.768 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:02.768 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:51:02.768 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:51:02.768 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:51:02.768 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:51:02.778 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:02.778 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 89 ms to get response, and 94 ms overall
17-03-17 20:51:02.788 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:51:02.788 -07 000000448 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 20:51:02.788 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:51:02.788 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30384, sync = True, waitForSettling = False)
17-03-17 20:51:02.788 -07 000000576 INF: Z Motor: Moving to -0.139089 mm, started at -0.132407 mm, distance = -6.68 um
17-03-17 20:51:02.798 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:02.808 -07 000000576 INF: FPGA: Xmit ZDACW 30384\n [Z Motor]
17-03-17 20:51:03.738 -07 000000429 INF: FPGA: Recv YRDPOS 127787
17-03-17 20:51:03.738 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:51:03.738 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:51:03.738 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 941 ms to get response, and 951 ms overall
17-03-17 20:51:03.738 -07 000000576 INF: FPGA: 'ZDACW 30384' command took 0 ms to send, 920 ms to get response, and 950 ms overall
17-03-17 20:51:03.738 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:03.738 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 930 ms to get response, and 950 ms overall
17-03-17 20:51:03.738 -07 000000448 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:03.738 -07 000000429 INF: FPGA: Recv ZDACR 30384
17-03-17 20:51:03.738 -07 000000448 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:51:03.738 -07 000000448 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:51:03.748 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:51:03.748 -07 000000576 INF: Z Motor: MoveAbsStepped took 959 ms (did NOT wait for settling yet))
17-03-17 20:51:03.748 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:51:04.118 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 20:51:04.118 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-17 20:51:04.158 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:04.158 -07 000000429 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:51:04.168 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:51:04.168 -07 000000448 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:04.168 -07 000000448 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:51:04.168 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.837 mm, average velocity = 2.203 mm/sec
17-03-17 20:51:04.608 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.985358,
17-03-17 20:51:05.118 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:05.118 -07 000000433 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:51:05.128 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:05.128 -07 000000448 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:05.148 -07 000000448 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:51:05.148 -07 000000448 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:51:05.148 -07 000000448 INF: Y Motor: Moved to 63.2246 after 2362 ms (table move)
17-03-17 20:51:05.148 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139089 mm (DAC = 30384)
17-03-17 20:51:05.148 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:05.158 -07 000000459 INF: FPGA: Recv ZSGSRD 30946
17-03-17 20:51:05.158 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:51:05.158 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:05.158 -07 000000448 INF: FPGA: Recv ZSGSRD 30939
17-03-17 20:51:05.168 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:05.168 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:05.168 -07 000000433 INF: FPGA: Recv ZSGSRD 30941
17-03-17 20:51:05.178 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:05.178 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:05.178 -07 000000448 INF: FPGA: Recv ZSGSRD 30946
17-03-17 20:51:05.188 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:05.188 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:05.188 -07 000000433 INF: FPGA: Recv ZSGSRD 30946
17-03-17 20:51:05.198 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:05.198 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:05.198 -07 000000448 INF: FPGA: Recv ZSGSRD 30945
17-03-17 20:51:05.208 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:05.208 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:05.208 -07 000000415 INF: FPGA: Recv ZSGSRD 30939
17-03-17 20:51:05.218 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:05.218 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:05.218 -07 000000462 INF: FPGA: Recv ZSGSRD 30933
17-03-17 20:51:05.228 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:05.228 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:05.228 -07 000000429 INF: FPGA: Recv ZSGSRD 30940
17-03-17 20:51:05.238 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:05.238 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:05.238 -07 000000462 INF: FPGA: Recv ZSGSRD 30939
17-03-17 20:51:05.248 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:05.248 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:05.248 -07 000000429 INF: FPGA: Recv ZPIEZORD 26986
17-03-17 20:51:05.258 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:05.258 -07 000000541 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.636 V. Piezo Error = -8.7 V.
17-03-17 20:51:05.258 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30941 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30940 (-138.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30933 (-138.2 uncal um), Max = 30946 (-138.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:51:05.258 -07 000000541 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30941, posNoise = 5, negNoise = 8
17-03-17 20:51:05.258 -07 000000541 INF: Z Motor: After move to -0.139089, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:05.258 -07 000000541 INF: Z Motor: Settle wait time = 2366 ms, measure time = 103 ms (allowed 150 ms), total time = 2469 ms
17-03-17 20:51:05.258 -07 000000541 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:51:05.308 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2614 ms
17-03-17 20:51:05.308 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:51:05.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:05.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:05.308 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:05.308 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:05.308 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:51:05.308 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:05.308 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:05.308 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:51:05.318 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:05.318 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:51:05.318 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:51:05.318 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:51:05.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:51:05.368 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:51:05.568 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:51:05.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:51:05.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:51:05.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:51:05.608 -07 000000626 INF: FPGA: Recv @CAMSNAP 282
17-03-17 20:51:05.608 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 20:51:05.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 286 ms overall
17-03-17 20:51:05.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:51:05.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:05.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:51:05.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:51:05.708 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:05.708 -07 000000429 INF: Autofocus start
17-03-17 20:51:05.708 -07 000000429 INF: MeasureProfile start
17-03-17 20:51:05.708 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:05.718 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:51:05.718 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:51:05.728 -07 000000429 INF: MeasureProfile done
17-03-17 20:51:05.728 -07 000000429 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:51:05.728 -07 000000429 INF: Autofocus finished
17-03-17 20:51:05.918 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:51:05.918 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:51:05.918 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.139094899889361. ----------
17-03-17 20:51:05.928 -07 000000610 INF: Cycle	43	Tile	5	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:51:05.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28891, sync = True, waitForSettling = True)
17-03-17 20:51:05.928 -07 000000610 INF: Z Motor: Moving to -0.132255 mm, started at -0.139095 mm, distance = 6.84 um
17-03-17 20:51:05.928 -07 000000610 INF: FPGA: Xmit ZDACW 28891\n [Z Motor]
17-03-17 20:51:05.928 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:51:05.938 -07 000000610 INF: FPGA: 'ZDACW 28891' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:51:05.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:05.938 -07 000000448 INF: FPGA: Recv ZDACR 28891
17-03-17 20:51:05.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:05.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:51:06.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:06.098 -07 000000462 INF: FPGA: Recv ZSGSRD 29876
17-03-17 20:51:06.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:06.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:06.108 -07 000000448 INF: FPGA: Recv ZSGSRD 29878
17-03-17 20:51:06.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:06.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:06.118 -07 000000448 INF: FPGA: Recv ZSGSRD 29877
17-03-17 20:51:06.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:06.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:06.128 -07 000000576 INF: FPGA: Recv ZSGSRD 29878
17-03-17 20:51:06.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:06.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:06.138 -07 000000448 INF: FPGA: Recv ZSGSRD 29877
17-03-17 20:51:06.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:06.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:06.148 -07 000000576 INF: FPGA: Recv ZSGSRD 29873
17-03-17 20:51:06.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:06.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:06.158 -07 000000448 INF: FPGA: Recv ZSGSRD 29881
17-03-17 20:51:06.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:06.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:06.168 -07 000000576 INF: FPGA: Recv ZSGSRD 29878
17-03-17 20:51:06.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:06.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:06.178 -07 000000448 INF: FPGA: Recv ZSGSRD 29882
17-03-17 20:51:06.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:06.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:06.188 -07 000000448 INF: FPGA: Recv ZSGSRD 29874
17-03-17 20:51:06.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:06.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:06.198 -07 000000448 INF: FPGA: Recv ZPIEZORD 25568
17-03-17 20:51:06.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:06.208 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -9.5 V.
17-03-17 20:51:06.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29877 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29878 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29873 (-131.4 uncal um), Max = 29882 (-131.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:51:06.208 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29877, posNoise = 5, negNoise = 4
17-03-17 20:51:06.208 -07 000000610 INF: Z Motor: After move to -0.132255, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:06.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:51:06.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:06.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:06.208 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:06.208 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:51:06.208 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:06.208 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:06.208 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:51:06.208 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:51:06.208 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:51:06.208 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:51:06.208 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:51:06.208 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:51:06.218 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:51:06.218 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:51:06.218 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:51:06.218 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:51:06.218 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:51:06.218 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:51:06.228 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:51:06.228 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:51:06.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 29068 150\n [Camera]
17-03-17 20:51:06.428 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:51:06.818 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:51:06.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:51:06.848 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:51:06.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:51:06.848 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:06.848 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:51:06.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:51:06.858 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:06.858 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:51:06.858 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:06.858 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:06.858 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:51:07.038 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29068 806
17-03-17 20:51:07.188 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:51:07.248 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:51:07.248 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:51:07.248 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:07.258 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:51:07.258 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:51:07.258 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:51:07.258 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:51:07.258 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:07.258 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:51:07.268 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:51:07.398 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:51:07.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:51:07.398 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:07.398 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:51:07.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:51:07.398 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:07.398 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:07.398 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:51:07.398 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:07.408 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:51:07.588 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:51:07.588 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:51:07.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 29068 150' command took 2 ms to send, 1352 ms to get response, and 1357 ms overall
17-03-17 20:51:07.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:51:07.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.224609375, Z-Position -0.132259538170527. ------
17-03-17 20:51:07.588 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:07.798 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:51:07.798 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:51:07.798 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:07.798 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:51:07.808 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:51:07.808 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:07.908 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:07.908 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-17 20:51:07.918 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 111 ms.
17-03-17 20:51:07.928 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-17 20:51:07.928 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13879 mm
17-03-17 20:51:07.928 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:51:07.938 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:07.938 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 342 ms to get response, and 344 ms overall
17-03-17 20:51:07.938 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:51:07.938 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:51:07.938 -07 000000415 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 20:51:07.948 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:08.738 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30319, sync = True, waitForSettling = False)
17-03-17 20:51:08.738 -07 000000424 INF: Z Motor: Moving to -0.138791 mm, started at -0.132260 mm, distance = -6.53 um
17-03-17 20:51:08.738 -07 000000424 INF: FPGA: Xmit ZDACW 30319\n [Z Motor]
17-03-17 20:51:09.738 -07 000000458 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:51:09.738 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:51:09.738 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:51:09.738 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1790 ms to get response, and 1798 ms overall
17-03-17 20:51:09.738 -07 000000424 INF: FPGA: 'ZDACW 30319' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-17 20:51:09.738 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:09.738 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1780 ms to get response, and 1797 ms overall
17-03-17 20:51:09.738 -07 000000415 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:09.738 -07 000000415 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:51:09.738 -07 000000415 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:51:09.738 -07 000000458 INF: FPGA: Recv ZDACR 30319
17-03-17 20:51:09.748 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:51:09.748 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:51:09.748 -07 000000424 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-17 20:51:10.118 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 20:51:10.118 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 20:51:10.158 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:10.168 -07 000000424 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:51:10.168 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:51:10.168 -07 000000415 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:10.168 -07 000000415 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 20:51:10.168 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.838 mm, average velocity = 2.171 mm/sec
17-03-17 20:51:10.358 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.985358,
17-03-17 20:51:11.118 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:11.118 -07 000000608 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:51:11.128 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:11.128 -07 000000415 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:11.138 -07 000000415 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:51:11.138 -07 000000415 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:51:11.138 -07 000000415 INF: Y Motor: Moved to 64.0571 after 3206 ms (table move)
17-03-17 20:51:11.148 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138791 mm (DAC = 30319)
17-03-17 20:51:11.148 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:11.148 -07 000000448 INF: FPGA: Recv ZSGSRD 30901
17-03-17 20:51:11.158 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:51:11.158 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:11.158 -07 000000424 INF: FPGA: Recv ZSGSRD 30889
17-03-17 20:51:11.168 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:11.168 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:11.168 -07 000000415 INF: FPGA: Recv ZSGSRD 30899
17-03-17 20:51:11.178 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:11.178 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:11.178 -07 000000448 INF: FPGA: Recv ZSGSRD 30894
17-03-17 20:51:11.188 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:11.188 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:11.188 -07 000000382 INF: FPGA: Recv ZSGSRD 30895
17-03-17 20:51:11.198 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:11.198 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:11.198 -07 000000608 INF: FPGA: Recv ZSGSRD 30896
17-03-17 20:51:11.208 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:11.208 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:11.208 -07 000000382 INF: FPGA: Recv ZSGSRD 30892
17-03-17 20:51:11.218 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:11.218 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:11.218 -07 000000448 INF: FPGA: Recv ZSGSRD 30892
17-03-17 20:51:11.228 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:11.228 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:11.228 -07 000000458 INF: FPGA: Recv ZSGSRD 30893
17-03-17 20:51:11.238 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:11.238 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:11.238 -07 000000501 INF: FPGA: Recv ZSGSRD 30904
17-03-17 20:51:11.248 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:11.248 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:11.248 -07 000000458 INF: FPGA: Recv ZPIEZORD 26870
17-03-17 20:51:11.258 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:11.258 -07 000000541 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.626 V. Piezo Error = -8.9 V.
17-03-17 20:51:11.258 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30896 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30894 (-138.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30889 (-138.0 uncal um), Max = 30904 (-138.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:51:11.258 -07 000000541 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30896, posNoise = 8, negNoise = 7
17-03-17 20:51:11.258 -07 000000541 INF: Z Motor: After move to -0.138791, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:11.258 -07 000000541 INF: Z Motor: Settle wait time = 2411 ms, measure time = 108 ms (allowed 150 ms), total time = 2519 ms
17-03-17 20:51:11.258 -07 000000541 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 20:51:11.308 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3373 ms
17-03-17 20:51:11.308 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:51:11.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:11.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:11.308 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:11.308 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:11.308 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:51:11.308 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:11.308 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:51:11.308 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:51:11.318 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:11.318 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:51:11.328 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 20:51:11.328 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:51:11.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:51:11.368 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:51:11.568 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:51:11.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:51:11.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:51:11.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:51:11.608 -07 000000576 INF: FPGA: Recv @CAMSNAP 282
17-03-17 20:51:11.618 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 20:51:11.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 286 ms overall
17-03-17 20:51:11.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:51:11.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:11.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:51:11.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:51:11.718 -07 000000448 INF: Autofocus start
17-03-17 20:51:11.718 -07 000000448 INF: MeasureProfile start
17-03-17 20:51:11.718 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:11.718 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:11.728 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:51:11.728 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:51:11.728 -07 000000448 INF: MeasureProfile done
17-03-17 20:51:11.728 -07 000000448 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:51:11.728 -07 000000448 INF: Autofocus finished
17-03-17 20:51:11.818 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:51:11.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:51:11.928 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:51:11.928 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:51:11.928 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138805810342982. ----------
17-03-17 20:51:11.928 -07 000000610 INF: Cycle	43	Tile	6	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:51:11.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28827, sync = True, waitForSettling = True)
17-03-17 20:51:11.938 -07 000000610 INF: Z Motor: Moving to -0.131962 mm, started at -0.138806 mm, distance = 6.84 um
17-03-17 20:51:11.938 -07 000000610 INF: FPGA: Xmit ZDACW 28827\n [Z Motor]
17-03-17 20:51:11.938 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:51:11.948 -07 000000610 INF: FPGA: 'ZDACW 28827' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:51:11.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:11.948 -07 000000448 INF: FPGA: Recv ZDACR 28827
17-03-17 20:51:11.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:11.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:51:12.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:12.108 -07 000000424 INF: FPGA: Recv ZSGSRD 29835
17-03-17 20:51:12.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:12.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:12.118 -07 000000501 INF: FPGA: Recv ZSGSRD 29832
17-03-17 20:51:12.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:12.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:12.128 -07 000000382 INF: FPGA: Recv ZSGSRD 29829
17-03-17 20:51:12.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:12.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:12.138 -07 000000501 INF: FPGA: Recv ZSGSRD 29830
17-03-17 20:51:12.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:12.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:12.148 -07 000000608 INF: FPGA: Recv ZSGSRD 29832
17-03-17 20:51:12.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:12.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:12.158 -07 000000458 INF: FPGA: Recv ZSGSRD 29830
17-03-17 20:51:12.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:12.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:12.168 -07 000000458 INF: FPGA: Recv ZSGSRD 29826
17-03-17 20:51:12.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:12.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:12.178 -07 000000424 INF: FPGA: Recv ZSGSRD 29834
17-03-17 20:51:12.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:12.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:12.188 -07 000000501 INF: FPGA: Recv ZSGSRD 29836
17-03-17 20:51:12.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:12.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:12.198 -07 000000448 INF: FPGA: Recv ZSGSRD 29827
17-03-17 20:51:12.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:12.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:12.208 -07 000000458 INF: FPGA: Recv ZPIEZORD 25478
17-03-17 20:51:12.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:12.218 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.399 V. Piezo Error = -9.6 V.
17-03-17 20:51:12.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29831 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29831 (-131.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29826 (-131.1 uncal um), Max = 29836 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:51:12.218 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29831, posNoise = 5, negNoise = 5
17-03-17 20:51:12.218 -07 000000610 INF: Z Motor: After move to -0.131962, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:12.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:51:12.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:12.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:12.218 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:12.218 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:12.218 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:51:12.218 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:12.218 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:51:12.218 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:51:12.218 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:12.218 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:51:12.218 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:51:12.218 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:51:12.228 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:12.228 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:51:12.228 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:51:12.228 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:51:12.238 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:51:12.238 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:51:12.238 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:51:12.238 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:51:12.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 29003 150\n [Camera]
17-03-17 20:51:12.438 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:51:12.858 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:51:12.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:51:12.868 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:12.868 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:51:12.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:51:12.868 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:12.868 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:12.868 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:51:12.868 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:12.868 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:51:13.058 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29003 806
17-03-17 20:51:13.208 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:51:13.258 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:51:13.258 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:51:13.258 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:13.258 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:51:13.258 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:51:13.258 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:13.258 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:13.258 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:13.258 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:51:13.268 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:51:13.408 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:51:13.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:51:13.408 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:13.418 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:51:13.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:51:13.418 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:13.418 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:13.418 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:51:13.418 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:13.418 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1090784416, 0x0, 418435064) start.
17-03-17 20:51:13.598 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:51:13.598 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:51:13.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 29003 150' command took 2 ms to send, 1346 ms to get response, and 1357 ms overall
17-03-17 20:51:13.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:51:13.598 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131964024412006. ------
17-03-17 20:51:13.608 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:13.608 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13857 mm
17-03-17 20:51:13.608 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:51:13.808 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:51:13.808 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:51:13.808 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:13.808 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:51:13.808 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:51:13.808 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1090784416, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:51:13.808 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:51:13.808 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:13.818 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:51:13.818 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:51:13.828 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:51:13.828 -07 000000501 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 20:51:13.828 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:13.838 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:13.838 -07 000000576 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:51:13.838 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 220 ms to get response, and 228 ms overall
17-03-17 20:51:13.838 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:51:13.838 -07 000000501 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:13.838 -07 000000501 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:51:13.838 -07 000000501 INF: Y Motor: Moving 1337 steps-11
17-03-17 20:51:13.838 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30270, sync = True, waitForSettling = False)
17-03-17 20:51:13.838 -07 000000576 INF: Z Motor: Moving to -0.138567 mm, started at -0.131964 mm, distance = -6.60 um
17-03-17 20:51:13.838 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:51:13.848 -07 000000576 INF: FPGA: Xmit ZDACW 30270\n [Z Motor]
17-03-17 20:51:13.858 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:51:14.738 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:51:14.738 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:51:14.738 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 20:51:14.738 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 870 ms to get response, and 898 ms overall
17-03-17 20:51:14.738 -07 000000576 INF: FPGA: 'ZDACW 30270' command took 0 ms to send, 880 ms to get response, and 898 ms overall
17-03-17 20:51:14.738 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:14.738 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 890 ms to get response, and 899 ms overall
17-03-17 20:51:14.738 -07 000000382 INF: FPGA: Recv ZDACR 30270
17-03-17 20:51:14.748 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:51:14.748 -07 000000576 INF: Z Motor: MoveAbsStepped took 907 ms (did NOT wait for settling yet))
17-03-17 20:51:14.768 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:14.778 -07 000000459 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:51:14.778 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:51:14.778 -07 000000501 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:14.778 -07 000000501 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:51:14.778 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 899 ms, distance = 0.835 mm, average velocity = 0.929 mm/sec
17-03-17 20:51:15.728 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:15.728 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.005817,
17-03-17 20:51:15.728 -07 000000576 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:51:15.738 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:15.738 -07 000000501 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:15.758 -07 000000501 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:51:15.758 -07 000000501 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:51:15.758 -07 000000501 INF: Y Motor: Moved to 64.8794 after 1932 ms (table move)
17-03-17 20:51:15.758 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138567 mm (DAC = 30270)
17-03-17 20:51:15.778 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:15.778 -07 000000459 INF: FPGA: Recv ZSGSRD 30858
17-03-17 20:51:15.788 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:51:15.788 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:15.788 -07 000000433 INF: FPGA: Recv ZSGSRD 30862
17-03-17 20:51:15.798 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:15.798 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:15.798 -07 000000462 INF: FPGA: Recv ZSGSRD 30854
17-03-17 20:51:15.808 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:15.808 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:15.808 -07 000000626 INF: FPGA: Recv ZSGSRD 30858
17-03-17 20:51:15.818 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:15.818 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:15.818 -07 000000462 INF: FPGA: Recv ZSGSRD 30858
17-03-17 20:51:15.828 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:15.828 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:15.828 -07 000000501 INF: FPGA: Recv ZSGSRD 30859
17-03-17 20:51:15.838 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:15.838 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:15.838 -07 000000433 INF: FPGA: Recv ZSGSRD 30863
17-03-17 20:51:15.848 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:15.848 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:15.848 -07 000000576 INF: FPGA: Recv ZSGSRD 30863
17-03-17 20:51:15.858 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:15.858 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:15.858 -07 000000462 INF: FPGA: Recv ZSGSRD 30866
17-03-17 20:51:15.868 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:15.868 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:15.868 -07 000000433 INF: FPGA: Recv ZSGSRD 30860
17-03-17 20:51:15.878 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:15.878 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:15.878 -07 000000459 INF: FPGA: Recv ZPIEZORD 26841
17-03-17 20:51:15.888 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:15.888 -07 000000502 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.619 V. Piezo Error = -8.8 V.
17-03-17 20:51:15.888 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30860 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30860 (-137.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30854 (-137.7 uncal um), Max = 30866 (-137.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:51:15.888 -07 000000502 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30860, posNoise = 6, negNoise = 6
17-03-17 20:51:15.888 -07 000000502 INF: Z Motor: After move to -0.138567, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:15.888 -07 000000502 INF: Z Motor: Settle wait time = 1925 ms, measure time = 123 ms (allowed 150 ms), total time = 2048 ms
17-03-17 20:51:15.888 -07 000000502 INF: Z Motor: Waiting extra 27 ms after reading position to reach expected total of 150 ms
17-03-17 20:51:15.918 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2306 ms
17-03-17 20:51:15.918 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:51:15.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:15.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:15.918 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:15.918 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:15.918 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:51:15.918 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:15.918 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:15.918 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:51:15.928 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:15.928 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:51:15.938 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:51:15.938 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:51:15.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:51:15.988 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:51:16.188 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:51:16.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:51:16.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:51:16.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) start.
17-03-17 20:51:16.228 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:51:16.228 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 20:51:16.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 20:51:16.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:51:16.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:16.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:51:16.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:51:16.328 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:16.328 -07 000000576 INF: Autofocus start
17-03-17 20:51:16.328 -07 000000576 INF: MeasureProfile start
17-03-17 20:51:16.328 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:16.338 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:51:16.338 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:51:16.338 -07 000000576 INF: MeasureProfile done
17-03-17 20:51:16.338 -07 000000576 INF: X=7  Z correction [um]=0.009724405
17-03-17 20:51:16.338 -07 000000576 INF: Autofocus finished
17-03-17 20:51:16.538 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:51:16.538 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:51:16.538 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.138574538705878. ----------
17-03-17 20:51:16.538 -07 000000610 INF: Cycle	43	Tile	7	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:51:16.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28785, sync = True, waitForSettling = True)
17-03-17 20:51:16.548 -07 000000610 INF: Z Motor: Moving to -0.131769 mm, started at -0.138575 mm, distance = 6.81 um
17-03-17 20:51:16.548 -07 000000610 INF: FPGA: Xmit ZDACW 28785\n [Z Motor]
17-03-17 20:51:16.548 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:51:16.558 -07 000000610 INF: FPGA: 'ZDACW 28785' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:16.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:16.558 -07 000000502 INF: FPGA: Recv ZDACR 28785
17-03-17 20:51:16.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:16.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:51:16.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:16.718 -07 000000382 INF: FPGA: Recv ZSGSRD 29806
17-03-17 20:51:16.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:16.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:16.728 -07 000000433 INF: FPGA: Recv ZSGSRD 29800
17-03-17 20:51:16.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:16.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:16.738 -07 000000382 INF: FPGA: Recv ZSGSRD 29795
17-03-17 20:51:16.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:16.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:16.748 -07 000000626 INF: FPGA: Recv ZSGSRD 29801
17-03-17 20:51:16.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:16.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:16.758 -07 000000501 INF: FPGA: Recv ZSGSRD 29803
17-03-17 20:51:16.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:16.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:16.768 -07 000000576 INF: FPGA: Recv ZSGSRD 29797
17-03-17 20:51:16.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:16.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:16.778 -07 000000459 INF: FPGA: Recv ZSGSRD 29802
17-03-17 20:51:16.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:16.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:16.788 -07 000000462 INF: FPGA: Recv ZSGSRD 29806
17-03-17 20:51:16.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:16.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:16.798 -07 000000626 INF: FPGA: Recv ZSGSRD 29802
17-03-17 20:51:16.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:16.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:16.808 -07 000000433 INF: FPGA: Recv ZSGSRD 29800
17-03-17 20:51:16.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:16.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:16.818 -07 000000502 INF: FPGA: Recv ZPIEZORD 25488
17-03-17 20:51:16.818 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:51:16.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:51:16.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:16.828 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -9.5 V.
17-03-17 20:51:16.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29801 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29802 (-131.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29795 (-130.9 uncal um), Max = 29806 (-131.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:51:16.828 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29801, posNoise = 5, negNoise = 6
17-03-17 20:51:16.828 -07 000000610 INF: Z Motor: After move to -0.131769, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:16.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:51:16.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:16.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:16.828 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:16.828 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:16.828 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:51:16.828 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:16.828 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:51:16.828 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:51:16.828 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:16.828 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:51:16.828 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:51:16.828 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:51:16.828 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:16.828 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:51:16.828 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:51:16.838 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:51:16.848 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:51:16.848 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:51:16.848 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:51:16.848 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:51:16.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28961 150\n [Camera]
17-03-17 20:51:17.048 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:51:17.478 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:51:17.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:51:17.478 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:17.478 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:17.478 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:51:17.478 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:51:17.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:51:17.478 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:17.588 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:17.588 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:51:17.668 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28961 806
17-03-17 20:51:17.818 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:51:17.868 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:51:17.868 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:51:17.868 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:17.868 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:51:17.868 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:51:17.988 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 20:51:17.988 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:51:17.988 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:17.988 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 20:51:17.998 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-17 20:51:18.018 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:51:18.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:51:18.018 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:18.018 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:51:18.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:51:18.018 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:18.028 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:18.028 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:51:18.028 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:18.028 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 20:51:18.208 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-17 20:51:18.208 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:51:18.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28961 150' command took 2 ms to send, 1347 ms to get response, and 1358 ms overall
17-03-17 20:51:18.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:51:18.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.131771298047753. ------
17-03-17 20:51:18.218 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:18.218 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13838 mm
17-03-17 20:51:18.218 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:51:18.428 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:51:18.428 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:51:18.428 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:18.428 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 20:51:18.428 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:51:18.428 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:18.438 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:18.438 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:18.438 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 20:51:18.438 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 20:51:18.448 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:18.448 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 223 ms to get response, and 229 ms overall
17-03-17 20:51:18.448 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:51:18.448 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:51:18.448 -07 000000459 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 20:51:18.448 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30229, sync = True, waitForSettling = False)
17-03-17 20:51:18.448 -07 000000382 INF: Z Motor: Moving to -0.138379 mm, started at -0.131771 mm, distance = -6.61 um
17-03-17 20:51:18.458 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:18.468 -07 000000382 INF: FPGA: Xmit ZDACW 30229\n [Z Motor]
17-03-17 20:51:19.238 -07 000000429 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:51:19.238 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:51:19.238 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:51:19.238 -07 000000382 INF: FPGA: 'ZDACW 30229' command took 0 ms to send, 767 ms to get response, and 787 ms overall
17-03-17 20:51:19.238 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:19.238 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 787 ms to get response, and 793 ms overall
17-03-17 20:51:19.238 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 777 ms to get response, and 792 ms overall
17-03-17 20:51:19.238 -07 000000459 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:19.238 -07 000000459 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:51:19.238 -07 000000459 INF: Y Motor: Moving 1349 steps-27
17-03-17 20:51:19.248 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:51:19.248 -07 000000576 INF: FPGA: Recv ZDACR 30229
17-03-17 20:51:19.248 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:51:19.248 -07 000000382 INF: Z Motor: MoveAbsStepped took 791 ms (did NOT wait for settling yet))
17-03-17 20:51:19.618 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:51:19.618 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-17 20:51:19.658 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:19.658 -07 000000576 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:51:19.668 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:51:19.668 -07 000000459 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:19.668 -07 000000459 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:51:19.668 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.843 mm, average velocity = 2.225 mm/sec
17-03-17 20:51:20.618 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:20.618 -07 000000382 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:51:20.628 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:20.628 -07 000000459 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:20.648 -07 000000459 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:51:20.648 -07 000000459 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:51:20.648 -07 000000459 INF: Y Motor: Moved to 65.7144 after 2201 ms (table move)
17-03-17 20:51:20.648 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138379 mm (DAC = 30229)
17-03-17 20:51:20.658 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:20.658 -07 000000459 INF: FPGA: Recv ZSGSRD 30833
17-03-17 20:51:20.668 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:51:20.668 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:20.668 -07 000000382 INF: FPGA: Recv ZSGSRD 30837
17-03-17 20:51:20.678 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:20.678 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:20.678 -07 000000429 INF: FPGA: Recv ZSGSRD 30827
17-03-17 20:51:20.688 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:20.688 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:20.688 -07 000000459 INF: FPGA: Recv ZSGSRD 30831
17-03-17 20:51:20.698 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:20.698 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:20.698 -07 000000576 INF: FPGA: Recv ZSGSRD 30831
17-03-17 20:51:20.708 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:20.708 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:20.708 -07 000000382 INF: FPGA: Recv ZSGSRD 30835
17-03-17 20:51:20.718 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:20.718 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:20.718 -07 000000459 INF: FPGA: Recv ZSGSRD 30829
17-03-17 20:51:20.728 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:20.728 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:20.728 -07 000000576 INF: FPGA: Recv ZSGSRD 30829
17-03-17 20:51:20.738 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:20.738 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:20.738 -07 000000459 INF: FPGA: Recv ZSGSRD 30832
17-03-17 20:51:20.748 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:20.748 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:20.748 -07 000000429 INF: FPGA: Recv ZSGSRD 30827
17-03-17 20:51:20.758 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:20.758 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:20.758 -07 000000382 INF: FPGA: Recv ZPIEZORD 26852
17-03-17 20:51:20.768 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:20.768 -07 000000502 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.613 V. Piezo Error = -8.8 V.
17-03-17 20:51:20.768 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30831 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30831 (-137.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30827 (-137.6 uncal um), Max = 30837 (-137.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:51:20.768 -07 000000502 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30831, posNoise = 6, negNoise = 4
17-03-17 20:51:20.768 -07 000000502 INF: Z Motor: After move to -0.138379, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:20.768 -07 000000502 INF: Z Motor: Settle wait time = 2201 ms, measure time = 110 ms (allowed 150 ms), total time = 2311 ms
17-03-17 20:51:20.768 -07 000000502 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 20:51:20.808 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2586 ms
17-03-17 20:51:20.808 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:51:20.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:20.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:20.818 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:20.818 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:20.818 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:51:20.818 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:20.818 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:51:20.818 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:51:20.818 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:20.818 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:51:20.828 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:51:20.828 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:51:20.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:51:20.868 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:51:21.068 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:51:21.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:51:21.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:51:21.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start.
17-03-17 20:51:21.098 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.014009,
17-03-17 20:51:21.108 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:51:21.118 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:51:21.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 287 ms overall
17-03-17 20:51:21.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:51:21.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:21.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:51:21.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:51:21.218 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:21.218 -07 000000502 INF: Autofocus start
17-03-17 20:51:21.218 -07 000000502 INF: MeasureProfile start
17-03-17 20:51:21.218 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:21.228 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:51:21.228 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:51:21.228 -07 000000502 INF: MeasureProfile done
17-03-17 20:51:21.228 -07 000000502 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:51:21.228 -07 000000502 INF: Autofocus finished
17-03-17 20:51:21.428 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:51:21.428 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:51:21.428 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138388236553767. ----------
17-03-17 20:51:21.428 -07 000000610 INF: Cycle	43	Tile	8	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:51:21.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28736, sync = True, waitForSettling = True)
17-03-17 20:51:21.438 -07 000000610 INF: Z Motor: Moving to -0.131545 mm, started at -0.138388 mm, distance = 6.84 um
17-03-17 20:51:21.438 -07 000000610 INF: FPGA: Xmit ZDACW 28736\n [Z Motor]
17-03-17 20:51:21.438 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:51:21.448 -07 000000610 INF: FPGA: 'ZDACW 28736' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:51:21.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:21.448 -07 000000576 INF: FPGA: Recv ZDACR 28736
17-03-17 20:51:21.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:21.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:51:21.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:21.608 -07 000000502 INF: FPGA: Recv ZSGSRD 29773
17-03-17 20:51:21.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:21.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:21.618 -07 000000382 INF: FPGA: Recv ZSGSRD 29769
17-03-17 20:51:21.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:21.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:21.628 -07 000000458 INF: FPGA: Recv ZSGSRD 29769
17-03-17 20:51:21.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:21.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:21.638 -07 000000415 INF: FPGA: Recv ZSGSRD 29767
17-03-17 20:51:21.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:21.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:21.648 -07 000000459 INF: FPGA: Recv ZSGSRD 29766
17-03-17 20:51:21.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:21.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:21.658 -07 000000502 INF: FPGA: Recv ZSGSRD 29766
17-03-17 20:51:21.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:21.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:21.668 -07 000000608 INF: FPGA: Recv ZSGSRD 29766
17-03-17 20:51:21.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:21.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:21.678 -07 000000576 INF: FPGA: Recv ZSGSRD 29768
17-03-17 20:51:21.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:21.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:21.688 -07 000000424 INF: FPGA: Recv ZSGSRD 29769
17-03-17 20:51:21.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:21.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:21.698 -07 000000459 INF: FPGA: Recv ZSGSRD 29763
17-03-17 20:51:21.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:21.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:21.708 -07 000000502 INF: FPGA: Recv ZPIEZORD 25431
17-03-17 20:51:21.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:21.718 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.385 V. Piezo Error = -9.5 V.
17-03-17 20:51:21.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29768 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29768 (-130.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29763 (-130.7 uncal um), Max = 29773 (-130.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:51:21.718 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29768, posNoise = 5, negNoise = 5
17-03-17 20:51:21.718 -07 000000610 INF: Z Motor: After move to -0.131545, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:21.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:51:21.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:21.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:21.718 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:21.718 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:21.718 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:51:21.718 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:21.718 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:51:21.718 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:51:21.718 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:51:21.718 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:51:21.718 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:51:21.718 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:51:21.728 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:51:21.728 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:51:21.728 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:51:21.728 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:51:21.738 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:51:21.738 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:51:21.738 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:51:21.738 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:51:21.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28913 150\n [Camera]
17-03-17 20:51:21.818 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:51:21.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:51:21.948 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:51:22.368 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:51:22.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:51:22.368 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:22.368 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:51:22.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:51:22.368 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:22.478 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:22.478 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1057034288, 0x0, 391868352) start.
17-03-17 20:51:22.478 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:22.478 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:51:22.558 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28913 806
17-03-17 20:51:22.708 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:51:22.868 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1057034288, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:51:22.868 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:51:22.868 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:22.878 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:51:22.878 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:51:22.878 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:22.878 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:51:22.878 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 20:51:22.878 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:51:22.888 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-17 20:51:22.908 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:51:22.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:51:22.908 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:22.918 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:51:22.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:51:22.918 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:22.918 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:22.918 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 20:51:22.918 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:22.918 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 20:51:23.098 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:51:23.098 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:51:23.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28913 150' command took 2 ms to send, 1348 ms to get response, and 1358 ms overall
17-03-17 20:51:23.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:51:23.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131559299047075. ------
17-03-17 20:51:23.108 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:23.108 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13794 mm
17-03-17 20:51:23.108 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:51:23.108 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:23.108 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:51:23.108 -07 000000576 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 20:51:23.118 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:51:23.118 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:23.128 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:51:23.318 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:51:23.318 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:51:23.318 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:23.318 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:51:23.318 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:51:23.318 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:23.318 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:51:23.318 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:51:23.318 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:51:23.328 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:51:23.328 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30134, sync = True, waitForSettling = False)
17-03-17 20:51:23.328 -07 000000429 INF: Z Motor: Moving to -0.137945 mm, started at -0.131559 mm, distance = -6.39 um
17-03-17 20:51:23.328 -07 000000429 INF: FPGA: Xmit ZDACW 30134\n [Z Motor]
17-03-17 20:51:23.338 -07 000000415 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:51:23.338 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:51:23.338 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:51:23.338 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 206 ms to get response, and 226 ms overall
17-03-17 20:51:23.338 -07 000000429 INF: FPGA: 'ZDACW 30134' command took 0 ms to send, 6 ms to get response, and 8 ms overall
17-03-17 20:51:23.338 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:23.338 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 216 ms to get response, and 227 ms overall
17-03-17 20:51:23.338 -07 000000576 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:23.338 -07 000000576 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:51:23.338 -07 000000576 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:51:23.338 -07 000000608 INF: FPGA: Recv ZDACR 30134
17-03-17 20:51:23.348 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:51:23.348 -07 000000429 INF: Z Motor: MoveAbsStepped took 12 ms (did NOT wait for settling yet))
17-03-17 20:51:23.348 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:51:23.718 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 20:51:23.718 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-17 20:51:23.758 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:23.758 -07 000000415 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:51:23.768 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:51:23.768 -07 000000576 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:23.768 -07 000000576 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:51:23.768 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.838 mm, average velocity = 2.206 mm/sec
17-03-17 20:51:24.718 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:24.718 -07 000000415 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:51:24.728 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:24.728 -07 000000576 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:24.748 -07 000000576 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:51:24.748 -07 000000576 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:51:24.748 -07 000000576 INF: Y Motor: Moved to 66.5396 after 1635 ms (table move)
17-03-17 20:51:24.748 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137945 mm (DAC = 30134)
17-03-17 20:51:24.748 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:24.758 -07 000000415 INF: FPGA: Recv ZSGSRD 30770
17-03-17 20:51:24.758 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:51:24.758 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:24.758 -07 000000576 INF: FPGA: Recv ZSGSRD 30762
17-03-17 20:51:24.768 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:24.768 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:24.768 -07 000000415 INF: FPGA: Recv ZSGSRD 30764
17-03-17 20:51:24.778 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:24.778 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:24.778 -07 000000429 INF: FPGA: Recv ZSGSRD 30766
17-03-17 20:51:24.788 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:24.788 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:24.788 -07 000000576 INF: FPGA: Recv ZSGSRD 30768
17-03-17 20:51:24.798 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:24.798 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:24.798 -07 000000576 INF: FPGA: Recv ZSGSRD 30766
17-03-17 20:51:24.808 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:24.808 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:24.808 -07 000000608 INF: FPGA: Recv ZSGSRD 30767
17-03-17 20:51:24.818 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:51:24.818 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:24.818 -07 000000576 INF: FPGA: Recv ZSGSRD 30759
17-03-17 20:51:24.828 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:24.828 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:24.828 -07 000000415 INF: FPGA: Recv ZSGSRD 30759
17-03-17 20:51:24.838 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:24.838 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:24.838 -07 000000429 INF: FPGA: Recv ZSGSRD 30759
17-03-17 20:51:24.848 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:24.848 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:24.848 -07 000000415 INF: FPGA: Recv ZPIEZORD 26810
17-03-17 20:51:24.858 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:24.858 -07 000000382 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.598 V. Piezo Error = -8.7 V.
17-03-17 20:51:24.858 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30764 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30765 (-137.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30759 (-137.1 uncal um), Max = 30770 (-137.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:51:24.858 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30764, posNoise = 6, negNoise = 5
17-03-17 20:51:24.858 -07 000000382 INF: Z Motor: After move to -0.137945, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:24.858 -07 000000382 INF: Z Motor: Settle wait time = 1419 ms, measure time = 103 ms (allowed 150 ms), total time = 1522 ms
17-03-17 20:51:24.858 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:51:24.908 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1795 ms
17-03-17 20:51:24.908 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:51:24.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:24.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:24.908 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:24.908 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:51:24.908 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:24.908 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:24.908 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:24.908 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:51:24.918 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:51:24.918 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:51:24.928 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 20:51:24.928 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 20:51:24.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:51:24.968 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:51:25.168 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:51:25.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:51:25.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:51:25.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start.
17-03-17 20:51:25.208 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:51:25.208 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 20:51:25.208 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 20:51:25.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:51:25.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:25.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:51:25.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:51:25.308 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:25.308 -07 000000576 INF: Autofocus start
17-03-17 20:51:25.308 -07 000000576 INF: MeasureProfile start
17-03-17 20:51:25.308 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:25.318 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:51:25.318 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:51:25.318 -07 000000576 INF: MeasureProfile done
17-03-17 20:51:25.328 -07 000000576 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:51:25.328 -07 000000576 INF: Autofocus finished
17-03-17 20:51:25.518 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:51:25.518 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:51:25.518 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.137957814340269. ----------
17-03-17 20:51:25.518 -07 000000610 INF: Cycle	43	Tile	9	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:51:25.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28658, sync = True, waitForSettling = True)
17-03-17 20:51:25.528 -07 000000610 INF: Z Motor: Moving to -0.131188 mm, started at -0.137958 mm, distance = 6.77 um
17-03-17 20:51:25.528 -07 000000610 INF: FPGA: Xmit ZDACW 28658\n [Z Motor]
17-03-17 20:51:25.528 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:51:25.538 -07 000000610 INF: FPGA: 'ZDACW 28658' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:25.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:25.538 -07 000000576 INF: FPGA: Recv ZDACR 28658
17-03-17 20:51:25.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:25.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:51:25.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:25.698 -07 000000459 INF: FPGA: Recv ZSGSRD 29715
17-03-17 20:51:25.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:25.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:25.708 -07 000000429 INF: FPGA: Recv ZSGSRD 29715
17-03-17 20:51:25.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:25.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:25.718 -07 000000448 INF: FPGA: Recv ZSGSRD 29711
17-03-17 20:51:25.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:25.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:25.728 -07 000000576 INF: FPGA: Recv ZSGSRD 29703
17-03-17 20:51:25.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:25.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:25.738 -07 000000541 INF: FPGA: Recv ZSGSRD 29708
17-03-17 20:51:25.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:25.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:25.748 -07 000000608 INF: FPGA: Recv ZSGSRD 29716
17-03-17 20:51:25.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:25.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:25.758 -07 000000448 INF: FPGA: Recv ZSGSRD 29712
17-03-17 20:51:25.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:25.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:25.768 -07 000000433 INF: FPGA: Recv ZSGSRD 29712
17-03-17 20:51:25.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:25.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:25.778 -07 000000541 INF: FPGA: Recv ZSGSRD 29708
17-03-17 20:51:25.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:25.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:25.788 -07 000000429 INF: FPGA: Recv ZSGSRD 29709
17-03-17 20:51:25.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:25.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:25.798 -07 000000382 INF: FPGA: Recv ZPIEZORD 25403
17-03-17 20:51:25.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:25.808 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.373 V. Piezo Error = -9.5 V.
17-03-17 20:51:25.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29711 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29712 (-130.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29703 (-130.4 uncal um), Max = 29716 (-130.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:51:25.808 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29711, posNoise = 5, negNoise = 8
17-03-17 20:51:25.808 -07 000000610 INF: Z Motor: After move to -0.131188, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:25.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:51:25.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:25.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:25.808 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:25.808 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:25.808 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:51:25.808 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:51:25.808 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:51:25.808 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:25.808 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:51:25.808 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:51:25.808 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:51:25.808 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:51:25.818 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:51:25.818 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:51:25.818 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:51:25.818 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:51:25.828 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:51:25.828 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:51:25.828 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:51:25.828 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:51:25.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28834 150\n [Camera]
17-03-17 20:51:26.028 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:51:26.458 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:51:26.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:51:26.458 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:26.458 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:51:26.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:51:26.458 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:26.458 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:26.458 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1092456552, 0x0, 391868352) start.
17-03-17 20:51:26.458 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:26.468 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:51:26.468 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 3.978563,
17-03-17 20:51:26.648 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28834 806
17-03-17 20:51:26.798 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:51:26.818 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:51:26.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:51:26.838 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:51:26.838 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:51:26.838 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:26.838 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:51:26.848 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1092456552, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 20:51:26.848 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:51:26.848 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:26.848 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:51:26.848 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:26.848 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:51:26.998 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:51:26.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:51:26.998 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:27.098 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:51:27.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:51:27.108 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:27.108 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 20:51:27.108 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:27.108 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:27.108 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:51:27.188 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:51:27.188 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:51:27.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28834 150' command took 2 ms to send, 1347 ms to get response, and 1358 ms overall
17-03-17 20:51:27.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:51:27.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.131193118954995. ------
17-03-17 20:51:27.198 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:27.198 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13795 mm
17-03-17 20:51:27.198 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:51:27.198 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:51:27.198 -07 000000462 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 20:51:27.198 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30134, sync = True, waitForSettling = False)
17-03-17 20:51:27.198 -07 000000502 INF: Z Motor: Moving to -0.137945 mm, started at -0.131193 mm, distance = -6.75 um
17-03-17 20:51:27.198 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:27.208 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:51:27.208 -07 000000502 INF: FPGA: Xmit ZDACW 30134\n [Z Motor]
17-03-17 20:51:27.208 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:51:27.218 -07 000000502 INF: FPGA: 'ZDACW 30134' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:51:27.218 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:27.218 -07 000000458 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:51:27.228 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:51:27.228 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:51:27.228 -07 000000462 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:27.228 -07 000000462 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:51:27.228 -07 000000462 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:51:27.238 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:27.238 -07 000000458 INF: FPGA: Recv ZDACR 30134
17-03-17 20:51:27.248 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:51:27.248 -07 000000502 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 20:51:27.248 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:51:27.428 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:51:27.428 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:51:27.508 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:51:27.508 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:51:27.508 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:27.508 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:51:27.508 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:51:27.508 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:27.508 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:27.508 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 20:51:27.508 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:27.518 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 20:51:27.618 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 20:51:27.618 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:51:27.658 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:27.658 -07 000000448 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:51:27.668 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:51:27.668 -07 000000462 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:27.668 -07 000000462 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 20:51:27.668 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.843 mm, average velocity = 2.129 mm/sec
17-03-17 20:51:28.618 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:28.618 -07 000000433 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:51:28.628 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:28.628 -07 000000462 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:28.658 -07 000000462 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:51:28.658 -07 000000462 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:51:28.658 -07 000000462 INF: Y Motor: Moved to 67.3726 after 1458 ms (table move)
17-03-17 20:51:28.658 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137945 mm (DAC = 30134)
17-03-17 20:51:28.658 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:28.668 -07 000000541 INF: FPGA: Recv ZSGSRD 30766
17-03-17 20:51:28.668 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:51:28.668 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:28.668 -07 000000433 INF: FPGA: Recv ZSGSRD 30760
17-03-17 20:51:28.678 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:51:28.678 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:28.678 -07 000000433 INF: FPGA: Recv ZSGSRD 30761
17-03-17 20:51:28.688 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:28.688 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:28.688 -07 000000541 INF: FPGA: Recv ZSGSRD 30771
17-03-17 20:51:28.698 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:28.698 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:28.698 -07 000000448 INF: FPGA: Recv ZSGSRD 30767
17-03-17 20:51:28.708 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:28.708 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:28.708 -07 000000448 INF: FPGA: Recv ZSGSRD 30757
17-03-17 20:51:28.718 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:28.718 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:28.718 -07 000000433 INF: FPGA: Recv ZSGSRD 30761
17-03-17 20:51:28.728 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:28.728 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:28.728 -07 000000462 INF: FPGA: Recv ZSGSRD 30759
17-03-17 20:51:28.738 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:28.738 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:28.738 -07 000000462 INF: FPGA: Recv ZSGSRD 30760
17-03-17 20:51:28.748 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:28.748 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:28.748 -07 000000541 INF: FPGA: Recv ZSGSRD 30771
17-03-17 20:51:28.758 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:28.758 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:28.758 -07 000000433 INF: FPGA: Recv ZPIEZORD 26817
17-03-17 20:51:28.768 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:28.768 -07 000000429 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.598 V. Piezo Error = -8.7 V.
17-03-17 20:51:28.768 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30763 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30761 (-137.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30757 (-137.1 uncal um), Max = 30771 (-137.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:51:28.768 -07 000000429 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30763, posNoise = 8, negNoise = 6
17-03-17 20:51:28.768 -07 000000429 INF: Z Motor: After move to -0.137945, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:28.768 -07 000000429 INF: Z Motor: Settle wait time = 1462 ms, measure time = 101 ms (allowed 150 ms), total time = 1563 ms
17-03-17 20:51:28.768 -07 000000429 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 20:51:28.818 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-17 20:51:28.818 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:51:28.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:28.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:28.818 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:51:28.818 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:28.818 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:28.818 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:28.818 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:28.818 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:51:28.828 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:28.828 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:51:28.828 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:51:28.828 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:51:28.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:51:28.878 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:51:29.078 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:51:29.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:51:29.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:51:29.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 20:51:29.118 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:51:29.118 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:51:29.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:51:29.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 20:51:29.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:29.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:51:29.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 20:51:29.218 -07 000000462 INF: Autofocus start
17-03-17 20:51:29.218 -07 000000462 INF: MeasureProfile start
17-03-17 20:51:29.218 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:29.218 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:29.228 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:51:29.228 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:51:29.228 -07 000000462 INF: MeasureProfile done
17-03-17 20:51:29.228 -07 000000462 INF: X=-3  Z correction [um]=-0.01800644
17-03-17 20:51:29.228 -07 000000462 INF: Autofocus finished
17-03-17 20:51:29.428 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:51:29.428 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:51:29.428 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.137951390128127. ----------
17-03-17 20:51:29.428 -07 000000610 INF: Cycle	43	Tile	10	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:51:29.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28643, sync = True, waitForSettling = True)
17-03-17 20:51:29.438 -07 000000610 INF: Z Motor: Moving to -0.131119 mm, started at -0.137951 mm, distance = 6.83 um
17-03-17 20:51:29.438 -07 000000610 INF: FPGA: Xmit ZDACW 28643\n [Z Motor]
17-03-17 20:51:29.438 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:51:29.448 -07 000000610 INF: FPGA: 'ZDACW 28643' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:29.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:29.448 -07 000000448 INF: FPGA: Recv ZDACR 28643
17-03-17 20:51:29.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:29.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:51:29.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:29.608 -07 000000541 INF: FPGA: Recv ZSGSRD 29705
17-03-17 20:51:29.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:29.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:29.618 -07 000000462 INF: FPGA: Recv ZSGSRD 29701
17-03-17 20:51:29.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:29.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:29.628 -07 000000541 INF: FPGA: Recv ZSGSRD 29702
17-03-17 20:51:29.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:29.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:29.638 -07 000000433 INF: FPGA: Recv ZSGSRD 29702
17-03-17 20:51:29.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:29.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:29.648 -07 000000541 INF: FPGA: Recv ZSGSRD 29702
17-03-17 20:51:29.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:29.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:29.658 -07 000000462 INF: FPGA: Recv ZSGSRD 29700
17-03-17 20:51:29.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:29.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:29.668 -07 000000462 INF: FPGA: Recv ZSGSRD 29696
17-03-17 20:51:29.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:29.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:29.678 -07 000000541 INF: FPGA: Recv ZSGSRD 29707
17-03-17 20:51:29.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:29.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:29.688 -07 000000541 INF: FPGA: Recv ZSGSRD 29692
17-03-17 20:51:29.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:29.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:29.698 -07 000000462 INF: FPGA: Recv ZSGSRD 29702
17-03-17 20:51:29.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:29.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:29.708 -07 000000541 INF: FPGA: Recv ZPIEZORD 25408
17-03-17 20:51:29.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:29.718 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -9.4 V.
17-03-17 20:51:29.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29701 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29702 (-130.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29692 (-130.3 uncal um), Max = 29707 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:51:29.718 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29701, posNoise = 6, negNoise = 9
17-03-17 20:51:29.718 -07 000000610 INF: Z Motor: After move to -0.131119, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:29.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-17 20:51:29.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:29.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:29.718 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:29.718 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:29.718 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:51:29.718 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:29.718 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:51:29.718 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:51:29.718 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:51:29.718 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:51:29.718 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:51:29.718 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:51:29.728 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:51:29.728 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:51:29.728 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:51:29.728 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:51:29.738 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 20:51:29.738 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:51:29.738 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 20:51:29.738 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 20:51:29.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28820 150\n [Camera]
17-03-17 20:51:29.938 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:51:30.358 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:51:30.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:51:30.358 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:30.368 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:51:30.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:51:30.368 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:30.368 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:30.368 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) start.
17-03-17 20:51:30.368 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:30.368 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1057034288, 0x0, 418435064) start.
17-03-17 20:51:30.558 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28820 806
17-03-17 20:51:30.708 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:51:30.758 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:51:30.758 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:51:30.758 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:30.758 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1057034288, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 20:51:30.758 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:51:30.758 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:30.758 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:30.758 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:51:30.768 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:30.768 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:51:30.908 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:51:30.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:51:30.908 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:30.908 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:51:30.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:51:30.908 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:31.018 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:31.018 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1092456552, 0x0, 391868352) start.
17-03-17 20:51:31.018 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:31.018 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 20:51:31.098 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-17 20:51:31.098 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:51:31.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28820 150' command took 2 ms to send, 1345 ms to get response, and 1358 ms overall
17-03-17 20:51:31.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:51:31.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.131128876833577. ------
17-03-17 20:51:31.108 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:31.108 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13757 mm
17-03-17 20:51:31.108 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:51:31.108 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:31.108 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30052, sync = True, waitForSettling = False)
17-03-17 20:51:31.108 -07 000000424 INF: Z Motor: Moving to -0.137569 mm, started at -0.131129 mm, distance = -6.44 um
17-03-17 20:51:31.108 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:51:31.108 -07 000000429 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 20:51:31.118 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:31.118 -07 000000424 INF: FPGA: Xmit ZDACW 30052\n [Z Motor]
17-03-17 20:51:31.118 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:51:31.128 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:31.128 -07 000000424 INF: FPGA: 'ZDACW 30052' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:51:31.128 -07 000000576 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:51:31.138 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:51:31.138 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:51:31.138 -07 000000429 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:31.138 -07 000000429 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:51:31.138 -07 000000429 INF: Y Motor: Moving 1344 steps-21
17-03-17 20:51:31.148 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:31.148 -07 000000501 INF: FPGA: Recv ZDACR 30052
17-03-17 20:51:31.158 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:51:31.158 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:51:31.158 -07 000000424 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 20:51:31.338 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:51:31.338 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:51:31.398 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:51:31.398 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 20:51:31.398 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:31.408 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:51:31.408 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1092456552, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 20:51:31.408 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:51:31.408 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:31.408 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-17 20:51:31.418 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:51:31.418 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-17 20:51:31.528 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 20:51:31.528 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:51:31.568 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:31.568 -07 000000448 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:51:31.578 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:51:31.578 -07 000000429 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:31.578 -07 000000429 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:51:31.578 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.111 mm/sec
17-03-17 20:51:31.818 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:51:31.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:51:31.838 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.015368,
17-03-17 20:51:32.528 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:32.528 -07 000000424 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:51:32.538 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:32.538 -07 000000429 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:32.558 -07 000000429 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:51:32.558 -07 000000429 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:51:32.558 -07 000000429 INF: Y Motor: Moved to 68.2051 after 1447 ms (table move)
17-03-17 20:51:32.558 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137569 mm (DAC = 30052)
17-03-17 20:51:32.558 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:32.558 -07 000000501 INF: FPGA: Recv ZSGSRD 30702
17-03-17 20:51:32.568 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:51:32.568 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:32.568 -07 000000424 INF: FPGA: Recv ZSGSRD 30700
17-03-17 20:51:32.578 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:32.578 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:32.578 -07 000000429 INF: FPGA: Recv ZSGSRD 30707
17-03-17 20:51:32.588 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:32.588 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:32.588 -07 000000424 INF: FPGA: Recv ZSGSRD 30705
17-03-17 20:51:32.598 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:32.598 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:32.598 -07 000000626 INF: FPGA: Recv ZSGSRD 30711
17-03-17 20:51:32.608 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:32.608 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:32.608 -07 000000424 INF: FPGA: Recv ZSGSRD 30706
17-03-17 20:51:32.618 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:32.618 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:32.618 -07 000000502 INF: FPGA: Recv ZSGSRD 30713
17-03-17 20:51:32.628 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:32.628 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:32.628 -07 000000424 INF: FPGA: Recv ZSGSRD 30699
17-03-17 20:51:32.638 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:32.638 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:32.638 -07 000000626 INF: FPGA: Recv ZSGSRD 30701
17-03-17 20:51:32.648 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:32.648 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:32.648 -07 000000459 INF: FPGA: Recv ZSGSRD 30701
17-03-17 20:51:32.658 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:32.658 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:32.658 -07 000000608 INF: FPGA: Recv ZPIEZORD 26756
17-03-17 20:51:32.668 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:32.668 -07 000000382 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.586 V. Piezo Error = -8.7 V.
17-03-17 20:51:32.668 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30704 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30704 (-136.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30699 (-136.7 uncal um), Max = 30713 (-136.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:51:32.668 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30704, posNoise = 9, negNoise = 5
17-03-17 20:51:32.668 -07 000000382 INF: Z Motor: After move to -0.137569, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:32.668 -07 000000382 INF: Z Motor: Settle wait time = 1451 ms, measure time = 106 ms (allowed 150 ms), total time = 1557 ms
17-03-17 20:51:32.668 -07 000000382 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:51:32.718 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 20:51:32.718 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:51:32.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:32.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:32.718 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:32.718 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:32.718 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:51:32.718 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:32.728 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:32.728 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:51:32.728 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:32.728 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:51:32.738 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 20:51:32.738 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 20:51:32.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:51:32.788 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:51:32.988 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:51:32.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:51:32.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:51:32.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 20:51:33.018 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:51:33.028 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 20:51:33.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 20:51:33.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:51:33.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:33.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:51:33.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:51:33.128 -07 000000424 INF: Autofocus start
17-03-17 20:51:33.128 -07 000000424 INF: MeasureProfile start
17-03-17 20:51:33.128 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:33.128 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:33.138 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:51:33.138 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:51:33.138 -07 000000424 INF: MeasureProfile done
17-03-17 20:51:33.138 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:51:33.138 -07 000000424 INF: Autofocus finished
17-03-17 20:51:33.338 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:51:33.338 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:51:33.338 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.137572361611763. ----------
17-03-17 20:51:33.338 -07 000000610 INF: Cycle	43	Tile	11	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:51:33.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28559, sync = True, waitForSettling = True)
17-03-17 20:51:33.348 -07 000000610 INF: Z Motor: Moving to -0.130735 mm, started at -0.137572 mm, distance = 6.84 um
17-03-17 20:51:33.348 -07 000000610 INF: FPGA: Xmit ZDACW 28559\n [Z Motor]
17-03-17 20:51:33.348 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:51:33.358 -07 000000610 INF: FPGA: 'ZDACW 28559' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:33.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:33.358 -07 000000626 INF: FPGA: Recv ZDACR 28559
17-03-17 20:51:33.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:33.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:51:33.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:33.518 -07 000000608 INF: FPGA: Recv ZSGSRD 29641
17-03-17 20:51:33.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:33.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:33.528 -07 000000424 INF: FPGA: Recv ZSGSRD 29642
17-03-17 20:51:33.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:33.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:33.538 -07 000000608 INF: FPGA: Recv ZSGSRD 29640
17-03-17 20:51:33.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:33.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:33.548 -07 000000626 INF: FPGA: Recv ZSGSRD 29640
17-03-17 20:51:33.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:33.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:33.558 -07 000000626 INF: FPGA: Recv ZSGSRD 29638
17-03-17 20:51:33.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:33.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:33.568 -07 000000424 INF: FPGA: Recv ZSGSRD 29642
17-03-17 20:51:33.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:33.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:33.578 -07 000000608 INF: FPGA: Recv ZSGSRD 29634
17-03-17 20:51:33.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:33.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:33.588 -07 000000608 INF: FPGA: Recv ZSGSRD 29640
17-03-17 20:51:33.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:33.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:33.598 -07 000000458 INF: FPGA: Recv ZSGSRD 29640
17-03-17 20:51:33.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:33.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:33.608 -07 000000608 INF: FPGA: Recv ZSGSRD 29637
17-03-17 20:51:33.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:33.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:33.618 -07 000000415 INF: FPGA: Recv ZPIEZORD 25307
17-03-17 20:51:33.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:33.628 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -9.5 V.
17-03-17 20:51:33.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29639 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29640 (-130.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29634 (-129.9 uncal um), Max = 29642 (-130.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:51:33.628 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29639, posNoise = 3, negNoise = 5
17-03-17 20:51:33.628 -07 000000610 INF: Z Motor: After move to -0.130735, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:33.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:51:33.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:33.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:33.628 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:51:33.628 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:33.628 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:33.628 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:33.628 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:51:33.628 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:51:33.628 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:33.628 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:51:33.628 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:51:33.628 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:51:33.628 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:51:33.628 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:51:33.628 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:33.628 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:51:33.638 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:51:33.638 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:51:33.638 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:51:33.638 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:51:33.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28736 150\n [Camera]
17-03-17 20:51:33.848 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:51:34.268 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:51:34.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:51:34.268 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:34.268 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:51:34.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:51:34.268 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:34.268 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:34.268 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1439269080, 0x0, 391868352) start.
17-03-17 20:51:34.278 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:34.278 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1057034288, 0x0, 418435064) start.
17-03-17 20:51:34.458 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28736 806
17-03-17 20:51:34.608 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:51:34.648 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1439269080, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:51:34.648 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1057034288, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:51:34.648 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:51:34.648 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:34.648 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:51:34.648 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:34.658 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:34.658 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:51:34.658 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:51:34.658 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:51:34.808 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:51:34.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:51:34.808 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:34.818 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:51:34.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:51:34.818 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:34.818 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:34.818 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 20:51:34.818 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:34.818 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:51:34.998 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-17 20:51:34.998 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:51:34.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28736 150' command took 2 ms to send, 1349 ms to get response, and 1358 ms overall
17-03-17 20:51:35.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:51:35.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.130730575680788. ------
17-03-17 20:51:35.118 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13733 mm
17-03-17 20:51:35.118 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:51:35.118 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:35.118 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30000, sync = True, waitForSettling = False)
17-03-17 20:51:35.118 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:51:35.118 -07 000000502 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 20:51:35.118 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:35.118 -07 000000459 INF: Z Motor: Moving to -0.137331 mm, started at -0.130731 mm, distance = -6.60 um
17-03-17 20:51:35.128 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:51:35.128 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:35.128 -07 000000626 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:51:35.138 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:51:35.138 -07 000000459 INF: FPGA: Xmit ZDACW 30000\n [Z Motor]
17-03-17 20:51:35.138 -07 000000502 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:35.138 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 20:51:35.138 -07 000000502 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:51:35.138 -07 000000502 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:51:35.148 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:51:35.148 -07 000000459 INF: FPGA: 'ZDACW 30000' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:51:35.158 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:51:35.168 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:35.168 -07 000000424 INF: FPGA: Recv ZDACR 30000
17-03-17 20:51:35.178 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:51:35.178 -07 000000459 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 20:51:35.198 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:51:35.198 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:51:35.198 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:35.208 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:51:35.208 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:51:35.208 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:35.208 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:51:35.208 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:51:35.208 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:51:35.218 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:51:35.348 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:51:35.348 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:51:35.528 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 20:51:35.528 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 20:51:35.568 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:35.568 -07 000000576 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:51:35.578 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:51:35.578 -07 000000502 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:35.578 -07 000000502 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:51:35.578 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.126 mm/sec
17-03-17 20:51:36.528 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:36.528 -07 000000433 INF: FPGA: Recv YRDPOS 141369
17-03-17 20:51:36.538 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:36.538 -07 000000502 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:36.558 -07 000000502 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:51:36.558 -07 000000502 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:51:36.558 -07 000000502 INF: Y Motor: Moved to 69.0278 after 1435 ms (table move)
17-03-17 20:51:36.558 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137331 mm (DAC = 30000)
17-03-17 20:51:36.558 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:36.568 -07 000000433 INF: FPGA: Recv ZSGSRD 30672
17-03-17 20:51:36.568 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:51:36.578 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:36.578 -07 000000458 INF: FPGA: Recv ZSGSRD 30665
17-03-17 20:51:36.588 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:51:36.588 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:36.588 -07 000000415 INF: FPGA: Recv ZSGSRD 30667
17-03-17 20:51:36.598 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:36.598 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:36.598 -07 000000458 INF: FPGA: Recv ZSGSRD 30671
17-03-17 20:51:36.608 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:36.608 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:36.608 -07 000000415 INF: FPGA: Recv ZSGSRD 30670
17-03-17 20:51:36.618 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:36.618 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:36.618 -07 000000458 INF: FPGA: Recv ZSGSRD 30660
17-03-17 20:51:36.628 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:36.628 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:36.628 -07 000000458 INF: FPGA: Recv ZSGSRD 30665
17-03-17 20:51:36.638 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:36.638 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:36.638 -07 000000541 INF: FPGA: Recv ZSGSRD 30662
17-03-17 20:51:36.648 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:36.648 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:36.648 -07 000000576 INF: FPGA: Recv ZSGSRD 30666
17-03-17 20:51:36.658 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:36.658 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:36.658 -07 000000415 INF: FPGA: Recv ZSGSRD 30668
17-03-17 20:51:36.668 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:36.668 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:36.668 -07 000000458 INF: FPGA: Recv ZPIEZORD 26704
17-03-17 20:51:36.678 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:36.678 -07 000000382 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.578 V. Piezo Error = -8.7 V.
17-03-17 20:51:36.678 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30667 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30666 (-136.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30660 (-136.5 uncal um), Max = 30672 (-136.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:51:36.678 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30667, posNoise = 5, negNoise = 7
17-03-17 20:51:36.678 -07 000000382 INF: Z Motor: After move to -0.137331, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:36.678 -07 000000382 INF: Z Motor: Settle wait time = 1439 ms, measure time = 113 ms (allowed 150 ms), total time = 1552 ms
17-03-17 20:51:36.678 -07 000000382 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-17 20:51:36.718 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 20:51:36.718 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:51:36.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:36.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:36.718 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:36.718 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:36.718 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:51:36.718 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:36.718 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:51:36.718 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:51:36.728 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:36.728 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:51:36.728 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:51:36.728 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:51:36.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:51:36.778 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:51:36.818 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:51:36.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:51:36.978 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:51:36.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:51:36.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:51:36.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:51:37.018 -07 000000459 INF: FPGA: Recv @CAMSNAP 282
17-03-17 20:51:37.018 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 20:51:37.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 286 ms overall
17-03-17 20:51:37.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:51:37.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:37.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:51:37.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 20:51:37.118 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:37.118 -07 000000382 INF: Autofocus start
17-03-17 20:51:37.118 -07 000000382 INF: MeasureProfile start
17-03-17 20:51:37.118 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:37.128 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:51:37.128 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:51:37.128 -07 000000382 INF: MeasureProfile done
17-03-17 20:51:37.128 -07 000000382 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:51:37.128 -07 000000382 INF: Autofocus finished
17-03-17 20:51:37.208 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.005817,
17-03-17 20:51:37.328 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:51:37.328 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:51:37.328 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.137334665762518. ----------
17-03-17 20:51:37.328 -07 000000610 INF: Cycle	43	Tile	12	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:51:37.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28525, sync = True, waitForSettling = True)
17-03-17 20:51:37.338 -07 000000610 INF: Z Motor: Moving to -0.130579 mm, started at -0.137335 mm, distance = 6.76 um
17-03-17 20:51:37.338 -07 000000610 INF: FPGA: Xmit ZDACW 28525\n [Z Motor]
17-03-17 20:51:37.338 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 20:51:37.348 -07 000000610 INF: FPGA: 'ZDACW 28525' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:37.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:37.348 -07 000000424 INF: FPGA: Recv ZDACR 28525
17-03-17 20:51:37.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:37.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:51:37.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:37.508 -07 000000576 INF: FPGA: Recv ZSGSRD 29613
17-03-17 20:51:37.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:37.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:37.518 -07 000000576 INF: FPGA: Recv ZSGSRD 29624
17-03-17 20:51:37.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:37.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:37.528 -07 000000502 INF: FPGA: Recv ZSGSRD 29617
17-03-17 20:51:37.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:37.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:37.538 -07 000000502 INF: FPGA: Recv ZSGSRD 29609
17-03-17 20:51:37.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:37.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:37.548 -07 000000502 INF: FPGA: Recv ZSGSRD 29618
17-03-17 20:51:37.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:37.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:37.558 -07 000000502 INF: FPGA: Recv ZSGSRD 29619
17-03-17 20:51:37.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:37.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:37.568 -07 000000459 INF: FPGA: Recv ZSGSRD 29624
17-03-17 20:51:37.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:37.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:37.578 -07 000000576 INF: FPGA: Recv ZSGSRD 29618
17-03-17 20:51:37.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:37.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:37.588 -07 000000424 INF: FPGA: Recv ZSGSRD 29609
17-03-17 20:51:37.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:37.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:37.598 -07 000000576 INF: FPGA: Recv ZSGSRD 29619
17-03-17 20:51:37.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:37.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:37.608 -07 000000424 INF: FPGA: Recv ZPIEZORD 25314
17-03-17 20:51:37.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:37.618 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.353 V. Piezo Error = -9.4 V.
17-03-17 20:51:37.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29617 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29618 (-129.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29609 (-129.8 uncal um), Max = 29624 (-129.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:51:37.618 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29617, posNoise = 7, negNoise = 8
17-03-17 20:51:37.618 -07 000000610 INF: Z Motor: After move to -0.130579, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:37.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:51:37.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:37.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:37.618 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:37.618 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:51:37.618 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:51:37.618 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:51:37.618 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:37.618 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:37.618 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:51:37.618 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:51:37.618 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:37.618 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:51:37.618 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:51:37.618 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:51:37.618 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:51:37.628 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:51:37.628 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:51:37.628 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:51:37.628 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:51:37.628 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:51:37.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28701 150\n [Camera]
17-03-17 20:51:37.838 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:51:38.258 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:51:38.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:51:38.258 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:38.258 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:51:38.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:51:38.258 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:38.268 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:38.268 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:51:38.268 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:38.268 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:51:38.448 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28701 806
17-03-17 20:51:38.598 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:51:38.648 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 20:51:38.648 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:51:38.648 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:38.648 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:51:38.648 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:51:38.648 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:38.658 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:38.658 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:51:38.658 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:38.668 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:51:38.798 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:51:38.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:51:38.808 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:38.808 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:51:38.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:51:38.808 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:38.808 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:38.808 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:51:38.808 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:38.808 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:51:38.998 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-17 20:51:38.998 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:51:38.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28701 150' command took 2 ms to send, 1351 ms to get response, and 1358 ms overall
17-03-17 20:51:38.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:51:38.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.130589243013669. ------
17-03-17 20:51:38.998 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:38.998 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13701 mm
17-03-17 20:51:38.998 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:51:39.008 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 29931, sync = True, waitForSettling = False)
17-03-17 20:51:39.008 -07 000000459 INF: Z Motor: Moving to -0.137015 mm, started at -0.130589 mm, distance = -6.43 um
17-03-17 20:51:39.008 -07 000000459 INF: FPGA: Xmit ZDACW 29931\n [Z Motor]
17-03-17 20:51:39.008 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:51:39.008 -07 000000433 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 20:51:39.018 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:39.208 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:51:39.208 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:51:39.208 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:39.208 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:51:39.208 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:51:39.208 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:39.218 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:39.218 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 20:51:39.218 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:39.228 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 20:51:39.228 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:39.228 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 20:51:39.228 -07 000000424 INF: FPGA: Recv YRDPOS 141369
17-03-17 20:51:39.228 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 222 ms to get response, and 224 ms overall
17-03-17 20:51:39.228 -07 000000459 INF: FPGA: 'ZDACW 29931' command took 0 ms to send, 212 ms to get response, and 221 ms overall
17-03-17 20:51:39.228 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:51:39.228 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 202 ms to get response, and 221 ms overall
17-03-17 20:51:39.228 -07 000000433 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:39.228 -07 000000433 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:51:39.228 -07 000000433 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:51:39.238 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:39.238 -07 000000424 INF: FPGA: Recv ZDACR 29931
17-03-17 20:51:39.248 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:51:39.248 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:51:39.248 -07 000000459 INF: Z Motor: MoveAbsStepped took 239 ms (did NOT wait for settling yet))
17-03-17 20:51:39.428 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:51:39.428 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 20:51:39.618 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:51:39.618 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:51:39.658 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:39.658 -07 000000424 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:51:39.668 -07 000000433 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:51:39.668 -07 000000433 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:39.668 -07 000000433 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:51:39.668 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.144 mm/sec
17-03-17 20:51:40.618 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:40.618 -07 000000424 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:51:40.628 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:40.628 -07 000000433 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:40.648 -07 000000433 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:51:40.648 -07 000000433 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:51:40.648 -07 000000433 INF: Y Motor: Moved to 69.8633 after 1641 ms (table move)
17-03-17 20:51:40.648 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137015 mm (DAC = 29931)
17-03-17 20:51:40.648 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:40.658 -07 000000429 INF: FPGA: Recv ZSGSRD 30622
17-03-17 20:51:40.658 -07 000000608 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:51:40.658 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:40.658 -07 000000459 INF: FPGA: Recv ZSGSRD 30618
17-03-17 20:51:40.668 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:40.668 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:40.668 -07 000000448 INF: FPGA: Recv ZSGSRD 30626
17-03-17 20:51:40.678 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:40.678 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:40.678 -07 000000433 INF: FPGA: Recv ZSGSRD 30620
17-03-17 20:51:40.688 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:40.688 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:40.688 -07 000000576 INF: FPGA: Recv ZSGSRD 30620
17-03-17 20:51:40.698 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:40.698 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:40.698 -07 000000502 INF: FPGA: Recv ZSGSRD 30621
17-03-17 20:51:40.708 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:40.708 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:40.708 -07 000000576 INF: FPGA: Recv ZSGSRD 30615
17-03-17 20:51:40.718 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:40.718 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:40.718 -07 000000502 INF: FPGA: Recv ZSGSRD 30614
17-03-17 20:51:40.728 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:40.728 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:40.728 -07 000000576 INF: FPGA: Recv ZSGSRD 30611
17-03-17 20:51:40.738 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:40.738 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:40.738 -07 000000502 INF: FPGA: Recv ZSGSRD 30620
17-03-17 20:51:40.748 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:40.748 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:40.748 -07 000000424 INF: FPGA: Recv ZPIEZORD 26643
17-03-17 20:51:40.758 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:40.758 -07 000000608 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.567 V. Piezo Error = -8.8 V.
17-03-17 20:51:40.758 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30619 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30620 (-136.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30611 (-136.2 uncal um), Max = 30626 (-136.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:51:40.758 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30619, posNoise = 7, negNoise = 8
17-03-17 20:51:40.758 -07 000000608 INF: Z Motor: After move to -0.137015, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:40.758 -07 000000608 INF: Z Motor: Settle wait time = 1644 ms, measure time = 105 ms (allowed 150 ms), total time = 1749 ms
17-03-17 20:51:40.758 -07 000000608 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:51:40.808 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1801 ms
17-03-17 20:51:40.808 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:51:40.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:40.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:40.808 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:40.808 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:40.808 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:51:40.808 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:40.808 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:40.808 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:51:40.818 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:40.818 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:51:40.828 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 20:51:40.828 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:51:40.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:51:40.868 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:51:41.068 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:51:41.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:51:41.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:51:41.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1073909352, 0x0, 559484976) start.
17-03-17 20:51:41.108 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:51:41.108 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:51:41.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 20:51:41.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1073909352, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:51:41.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:41.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:51:41.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:51:41.208 -07 000000459 INF: Autofocus start
17-03-17 20:51:41.208 -07 000000459 INF: MeasureProfile start
17-03-17 20:51:41.208 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:41.208 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:41.218 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:51:41.218 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:51:41.218 -07 000000459 INF: MeasureProfile done
17-03-17 20:51:41.218 -07 000000459 INF: X=32  Z correction [um]=0.1299841
17-03-17 20:51:41.218 -07 000000459 INF: Autofocus finished
17-03-17 20:51:41.418 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:51:41.418 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:51:41.418 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.137026303579714. ----------
17-03-17 20:51:41.418 -07 000000610 INF: Cycle	43	Tile	13	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:51:41.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28472, sync = True, waitForSettling = True)
17-03-17 20:51:41.428 -07 000000610 INF: Z Motor: Moving to -0.130336 mm, started at -0.137026 mm, distance = 6.69 um
17-03-17 20:51:41.428 -07 000000610 INF: FPGA: Xmit ZDACW 28472\n [Z Motor]
17-03-17 20:51:41.428 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:51:41.438 -07 000000610 INF: FPGA: 'ZDACW 28472' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:51:41.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:41.438 -07 000000608 INF: FPGA: Recv ZDACR 28472
17-03-17 20:51:41.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:41.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:51:41.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:41.598 -07 000000433 INF: FPGA: Recv ZSGSRD 29576
17-03-17 20:51:41.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:41.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:41.608 -07 000000459 INF: FPGA: Recv ZSGSRD 29582
17-03-17 20:51:41.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:41.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:41.618 -07 000000433 INF: FPGA: Recv ZSGSRD 29579
17-03-17 20:51:41.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:41.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:41.628 -07 000000448 INF: FPGA: Recv ZSGSRD 29578
17-03-17 20:51:41.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:41.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:41.638 -07 000000576 INF: FPGA: Recv ZSGSRD 29576
17-03-17 20:51:41.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:41.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:41.648 -07 000000576 INF: FPGA: Recv ZSGSRD 29584
17-03-17 20:51:41.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:41.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:41.658 -07 000000448 INF: FPGA: Recv ZSGSRD 29577
17-03-17 20:51:41.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:41.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:41.668 -07 000000462 INF: FPGA: Recv ZSGSRD 29578
17-03-17 20:51:41.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:41.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:41.678 -07 000000448 INF: FPGA: Recv ZSGSRD 29577
17-03-17 20:51:41.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:41.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:41.688 -07 000000462 INF: FPGA: Recv ZSGSRD 29575
17-03-17 20:51:41.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:41.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:41.698 -07 000000448 INF: FPGA: Recv ZPIEZORD 25266
17-03-17 20:51:41.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:41.708 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.345 V. Piezo Error = -9.5 V.
17-03-17 20:51:41.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29578 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29578 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29575 (-129.5 uncal um), Max = 29584 (-129.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:51:41.708 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29578, posNoise = 6, negNoise = 3
17-03-17 20:51:41.708 -07 000000610 INF: Z Motor: After move to -0.130336, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:41.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:51:41.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:41.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:41.708 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:41.708 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:41.708 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:51:41.708 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:51:41.708 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:51:41.708 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:41.708 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:51:41.708 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:51:41.708 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:41.708 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:51:41.718 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:51:41.718 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:51:41.718 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:41.718 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:51:41.728 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:51:41.728 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:51:41.728 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:51:41.728 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:51:41.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28648 150\n [Camera]
17-03-17 20:51:41.818 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:51:41.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:51:41.928 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:51:42.348 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:51:42.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:51:42.348 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:42.348 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:42.348 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1144753880, 0x0, 391868352) start.
17-03-17 20:51:42.348 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:51:42.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:51:42.348 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:42.348 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:42.348 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 20:51:42.538 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28648 806
17-03-17 20:51:42.578 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.016692,
17-03-17 20:51:42.688 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 958
17-03-17 20:51:42.728 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:51:42.728 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:51:42.728 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:42.728 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1144753880, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:51:42.728 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:51:42.728 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:42.738 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:51:42.738 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:51:42.738 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:51:42.738 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:51:42.888 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:51:42.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:51:42.898 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:42.898 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:42.898 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:51:42.898 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:51:42.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:51:42.898 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:42.898 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:42.898 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:51:43.088 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:51:43.088 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:51:43.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28648 150' command took 2 ms to send, 1351 ms to get response, and 1357 ms overall
17-03-17 20:51:43.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:51:43.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.130338698740141. ------
17-03-17 20:51:43.088 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:43.088 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13670 mm
17-03-17 20:51:43.088 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:51:43.208 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:43.208 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-17 20:51:43.208 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:51:43.208 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:51:43.208 -07 000000462 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 20:51:43.208 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29863, sync = True, waitForSettling = False)
17-03-17 20:51:43.208 -07 000000608 INF: Z Motor: Moving to -0.136704 mm, started at -0.130339 mm, distance = -6.37 um
17-03-17 20:51:43.218 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:43.218 -07 000000501 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:51:43.228 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:51:43.228 -07 000000462 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:43.228 -07 000000608 INF: FPGA: Xmit ZDACW 29863\n [Z Motor]
17-03-17 20:51:43.228 -07 000000462 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:51:43.228 -07 000000462 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:51:43.228 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:51:43.238 -07 000000608 INF: FPGA: 'ZDACW 29863' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:51:43.238 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:51:43.248 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:43.248 -07 000000501 INF: FPGA: Recv ZDACR 29863
17-03-17 20:51:43.258 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:51:43.258 -07 000000608 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 20:51:43.288 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:51:43.288 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:51:43.288 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:43.288 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:51:43.288 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:51:43.288 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:43.298 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:43.298 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:43.298 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:51:43.298 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:51:43.408 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:51:43.408 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:51:43.608 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 20:51:43.608 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 20:51:43.648 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:43.648 -07 000000429 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:51:43.658 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:51:43.658 -07 000000462 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:43.658 -07 000000462 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:51:43.658 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.839 mm, average velocity = 2.180 mm/sec
17-03-17 20:51:44.608 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:44.608 -07 000000501 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:51:44.618 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:44.618 -07 000000462 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:44.648 -07 000000462 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:51:44.648 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:51:44.648 -07 000000462 INF: Y Motor: Moved to 70.6890 after 1440 ms (table move)
17-03-17 20:51:44.658 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136704 mm (DAC = 29863)
17-03-17 20:51:44.658 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:44.658 -07 000000608 INF: FPGA: Recv ZSGSRD 30570
17-03-17 20:51:44.668 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:44.668 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:44.668 -07 000000541 INF: FPGA: Recv ZSGSRD 30573
17-03-17 20:51:44.678 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:44.678 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:44.678 -07 000000448 INF: FPGA: Recv ZSGSRD 30572
17-03-17 20:51:44.688 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:44.688 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:44.688 -07 000000541 INF: FPGA: Recv ZSGSRD 30566
17-03-17 20:51:44.698 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:44.698 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:44.698 -07 000000448 INF: FPGA: Recv ZSGSRD 30581
17-03-17 20:51:44.708 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:44.708 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:44.708 -07 000000429 INF: FPGA: Recv ZSGSRD 30564
17-03-17 20:51:44.718 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:44.718 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:44.718 -07 000000448 INF: FPGA: Recv ZSGSRD 30561
17-03-17 20:51:44.728 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:44.728 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:44.728 -07 000000541 INF: FPGA: Recv ZSGSRD 30561
17-03-17 20:51:44.738 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:51:44.738 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:44.738 -07 000000429 INF: FPGA: Recv ZSGSRD 30568
17-03-17 20:51:44.748 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:44.748 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:44.748 -07 000000462 INF: FPGA: Recv ZSGSRD 30579
17-03-17 20:51:44.758 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:44.758 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:44.758 -07 000000448 INF: FPGA: Recv ZPIEZORD 26622
17-03-17 20:51:44.768 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:44.768 -07 000000382 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.557 V. Piezo Error = -8.7 V.
17-03-17 20:51:44.768 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30570 (-135.9 uncal um), Error = 0.8 uncal um, Median = 30569 (-135.9 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30561 (-135.9 uncal um), Max = 30581 (-136.0 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:51:44.768 -07 000000382 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30570, posNoise = 11, negNoise = 9
17-03-17 20:51:44.768 -07 000000382 INF: Z Motor: After move to -0.136704, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:44.768 -07 000000382 INF: Z Motor: Settle wait time = 1446 ms, measure time = 111 ms (allowed 150 ms), total time = 1557 ms
17-03-17 20:51:44.768 -07 000000382 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 20:51:44.808 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1713 ms
17-03-17 20:51:44.808 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:51:44.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:44.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:44.808 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:44.808 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:44.808 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:51:44.808 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:44.808 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:44.808 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:51:44.818 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:44.818 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:51:44.818 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:51:44.818 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:51:44.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:51:44.868 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:51:45.068 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:51:45.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:51:45.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:51:45.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:51:45.108 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:51:45.108 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 20:51:45.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 20:51:45.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:51:45.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:45.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:51:45.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:51:45.208 -07 000000429 INF: Autofocus start
17-03-17 20:51:45.208 -07 000000429 INF: MeasureProfile start
17-03-17 20:51:45.208 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:45.208 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:45.218 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:51:45.218 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:51:45.218 -07 000000429 INF: MeasureProfile done
17-03-17 20:51:45.218 -07 000000429 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:51:45.218 -07 000000429 INF: Autofocus finished
17-03-17 20:51:45.418 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:51:45.418 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:51:45.418 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136711517184767. ----------
17-03-17 20:51:45.418 -07 000000610 INF: Cycle	43	Tile	14	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:51:45.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28358, sync = True, waitForSettling = True)
17-03-17 20:51:45.428 -07 000000610 INF: Z Motor: Moving to -0.129815 mm, started at -0.136712 mm, distance = 6.90 um
17-03-17 20:51:45.428 -07 000000610 INF: FPGA: Xmit ZDACW 28358\n [Z Motor]
17-03-17 20:51:45.428 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:51:45.438 -07 000000610 INF: FPGA: 'ZDACW 28358' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:51:45.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:45.438 -07 000000462 INF: FPGA: Recv ZDACR 28358
17-03-17 20:51:45.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:51:45.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:51:45.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:45.598 -07 000000626 INF: FPGA: Recv ZSGSRD 29494
17-03-17 20:51:45.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:45.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:45.608 -07 000000448 INF: FPGA: Recv ZSGSRD 29503
17-03-17 20:51:45.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:45.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:45.618 -07 000000608 INF: FPGA: Recv ZSGSRD 29496
17-03-17 20:51:45.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:45.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:45.628 -07 000000462 INF: FPGA: Recv ZSGSRD 29493
17-03-17 20:51:45.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:45.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:45.638 -07 000000608 INF: FPGA: Recv ZSGSRD 29500
17-03-17 20:51:45.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:45.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:45.648 -07 000000541 INF: FPGA: Recv ZSGSRD 29493
17-03-17 20:51:45.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:45.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:45.658 -07 000000608 INF: FPGA: Recv ZSGSRD 29499
17-03-17 20:51:45.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:45.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:45.668 -07 000000626 INF: FPGA: Recv ZSGSRD 29494
17-03-17 20:51:45.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:45.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:45.678 -07 000000608 INF: FPGA: Recv ZSGSRD 29501
17-03-17 20:51:45.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:45.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:45.688 -07 000000462 INF: FPGA: Recv ZSGSRD 29494
17-03-17 20:51:45.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:45.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:45.698 -07 000000501 INF: FPGA: Recv ZPIEZORD 25190
17-03-17 20:51:45.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:45.708 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -9.5 V.
17-03-17 20:51:45.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29497 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29495 (-129.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29493 (-129.0 uncal um), Max = 29503 (-129.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:51:45.708 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29497, posNoise = 6, negNoise = 4
17-03-17 20:51:45.708 -07 000000610 INF: Z Motor: After move to -0.129815, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:45.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:51:45.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:45.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:45.708 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:45.708 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:45.708 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:51:45.708 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:45.708 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:51:45.708 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:51:45.708 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:51:45.708 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:51:45.708 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:51:45.708 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:51:45.708 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:45.708 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:51:45.718 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:51:45.718 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:51:45.728 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:51:45.728 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:51:45.728 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:51:45.728 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:51:45.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28535 150\n [Camera]
17-03-17 20:51:45.928 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:51:46.358 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:51:46.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:51:46.358 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:46.358 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:51:46.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:51:46.358 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:46.358 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:46.358 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:51:46.358 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:46.358 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:51:46.548 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28535 806
17-03-17 20:51:46.698 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:51:46.748 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:51:46.748 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:51:46.748 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:46.748 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 20:51:46.748 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:51:46.748 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:46.758 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:51:46.758 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:51:46.758 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:46.768 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 20:51:46.828 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:51:46.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:51:46.898 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:51:46.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:51:46.898 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:46.908 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:51:46.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:51:46.908 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:46.908 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:46.908 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:51:46.908 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:46.908 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1057034288, 0x0, 418435064) start.
17-03-17 20:51:47.088 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-17 20:51:47.098 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:51:47.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28535 150' command took 2 ms to send, 1350 ms to get response, and 1361 ms overall
17-03-17 20:51:47.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:51:47.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129818337556658. ------
17-03-17 20:51:47.098 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:47.098 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13635 mm
17-03-17 20:51:47.098 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:51:47.098 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:51:47.098 -07 000000626 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 20:51:47.098 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:47.098 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 29786, sync = True, waitForSettling = False)
17-03-17 20:51:47.098 -07 000000429 INF: Z Motor: Moving to -0.136352 mm, started at -0.129818 mm, distance = -6.53 um
17-03-17 20:51:47.108 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:51:47.108 -07 000000429 INF: FPGA: Xmit ZDACW 29786\n [Z Motor]
17-03-17 20:51:47.108 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:51:47.118 -07 000000429 INF: FPGA: 'ZDACW 29786' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:51:47.118 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:47.118 -07 000000462 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:51:47.128 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:51:47.128 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:51:47.128 -07 000000626 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:47.128 -07 000000626 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:51:47.128 -07 000000626 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:51:47.138 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:47.248 -07 000000433 INF: FPGA: Recv ZDACR 29786
17-03-17 20:51:47.258 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:51:47.258 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-17 20:51:47.258 -07 000000429 INF: Z Motor: MoveAbsStepped took 151 ms (did NOT wait for settling yet))
17-03-17 20:51:47.288 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1057034288, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:51:47.288 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:51:47.288 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:47.288 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 20:51:47.288 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:51:47.298 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:47.298 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:47.298 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:47.298 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:51:47.298 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:51:47.328 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:51:47.328 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:51:47.628 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 20:51:47.628 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 507 ms overall
17-03-17 20:51:47.678 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:47.678 -07 000000475 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:51:47.688 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:51:47.688 -07 000000626 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:47.688 -07 000000626 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:51:47.688 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 508 ms, distance = 0.844 mm, average velocity = 1.661 mm/sec
17-03-17 20:51:47.948 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.026244,
17-03-17 20:51:48.638 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:48.638 -07 000000475 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:51:48.648 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:48.648 -07 000000626 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:48.668 -07 000000626 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:51:48.668 -07 000000626 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:51:48.668 -07 000000626 INF: Y Motor: Moved to 71.5190 after 1566 ms (table move)
17-03-17 20:51:48.668 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136352 mm (DAC = 29786)
17-03-17 20:51:48.668 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:48.678 -07 000000608 INF: FPGA: Recv ZSGSRD 30518
17-03-17 20:51:48.678 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:51:48.678 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:48.678 -07 000000502 INF: FPGA: Recv ZSGSRD 30520
17-03-17 20:51:48.688 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:48.688 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:48.688 -07 000000458 INF: FPGA: Recv ZSGSRD 30512
17-03-17 20:51:48.698 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:48.698 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:48.698 -07 000000576 INF: FPGA: Recv ZSGSRD 30520
17-03-17 20:51:48.708 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:48.708 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:48.708 -07 000000608 INF: FPGA: Recv ZSGSRD 30520
17-03-17 20:51:48.718 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:48.718 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:48.718 -07 000000382 INF: FPGA: Recv ZSGSRD 30516
17-03-17 20:51:48.728 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:48.728 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:48.728 -07 000000448 INF: FPGA: Recv ZSGSRD 30509
17-03-17 20:51:48.738 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:48.738 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:48.738 -07 000000576 INF: FPGA: Recv ZSGSRD 30505
17-03-17 20:51:48.748 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:48.748 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:48.748 -07 000000626 INF: FPGA: Recv ZSGSRD 30515
17-03-17 20:51:48.758 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:48.758 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:48.758 -07 000000382 INF: FPGA: Recv ZSGSRD 30515
17-03-17 20:51:48.768 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:48.768 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:48.768 -07 000000502 INF: FPGA: Recv ZPIEZORD 26556
17-03-17 20:51:48.778 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:48.778 -07 000000459 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.545 V. Piezo Error = -8.7 V.
17-03-17 20:51:48.778 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30515 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30516 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30505 (-135.5 uncal um), Max = 30520 (-135.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:51:48.778 -07 000000459 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30515, posNoise = 5, negNoise = 10
17-03-17 20:51:48.778 -07 000000459 INF: Z Motor: After move to -0.136352, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:48.778 -07 000000459 INF: Z Motor: Settle wait time = 1568 ms, measure time = 105 ms (allowed 150 ms), total time = 1673 ms
17-03-17 20:51:48.778 -07 000000459 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:51:48.828 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1725 ms
17-03-17 20:51:48.828 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:51:48.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:48.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:48.828 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:48.828 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:51:48.828 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:48.828 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:48.828 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:48.828 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:51:48.838 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:48.838 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:51:48.848 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-17 20:51:48.848 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 20:51:48.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:51:48.898 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:51:49.098 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:51:49.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:51:49.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:51:49.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:51:49.138 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:51:49.138 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 20:51:49.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 20:51:49.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:51:49.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:49.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:51:49.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 20:51:49.238 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:49.238 -07 000000626 INF: Autofocus start
17-03-17 20:51:49.238 -07 000000626 INF: MeasureProfile start
17-03-17 20:51:49.238 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:49.248 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:51:49.248 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:51:49.248 -07 000000626 INF: MeasureProfile done
17-03-17 20:51:49.248 -07 000000626 INF: X=-33  Z correction [um]=-0.164041
17-03-17 20:51:49.248 -07 000000626 INF: Autofocus finished
17-03-17 20:51:49.448 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:51:49.448 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:51:49.448 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.136358185516971. ----------
17-03-17 20:51:49.458 -07 000000610 INF: Cycle	43	Tile	15	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:51:49.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28263, sync = True, waitForSettling = True)
17-03-17 20:51:49.458 -07 000000610 INF: Z Motor: Moving to -0.129380 mm, started at -0.136358 mm, distance = 6.98 um
17-03-17 20:51:49.458 -07 000000610 INF: FPGA: Xmit ZDACW 28263\n [Z Motor]
17-03-17 20:51:49.458 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:51:49.468 -07 000000610 INF: FPGA: 'ZDACW 28263' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:51:49.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:49.468 -07 000000458 INF: FPGA: Recv ZDACR 28263
17-03-17 20:51:49.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:49.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:51:49.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:49.628 -07 000000448 INF: FPGA: Recv ZSGSRD 29433
17-03-17 20:51:49.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:49.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:49.638 -07 000000448 INF: FPGA: Recv ZSGSRD 29434
17-03-17 20:51:49.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:51:49.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:49.648 -07 000000459 INF: FPGA: Recv ZSGSRD 29430
17-03-17 20:51:49.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:49.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:49.658 -07 000000448 INF: FPGA: Recv ZSGSRD 29426
17-03-17 20:51:49.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:49.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:49.668 -07 000000541 INF: FPGA: Recv ZSGSRD 29433
17-03-17 20:51:49.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:49.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:49.678 -07 000000424 INF: FPGA: Recv ZSGSRD 29431
17-03-17 20:51:49.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:49.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:49.688 -07 000000462 INF: FPGA: Recv ZSGSRD 29424
17-03-17 20:51:49.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:49.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:49.698 -07 000000448 INF: FPGA: Recv ZSGSRD 29431
17-03-17 20:51:49.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:49.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:49.708 -07 000000501 INF: FPGA: Recv ZSGSRD 29429
17-03-17 20:51:49.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:49.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:49.718 -07 000000415 INF: FPGA: Recv ZSGSRD 29430
17-03-17 20:51:49.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:49.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:49.728 -07 000000475 INF: FPGA: Recv ZPIEZORD 25115
17-03-17 20:51:49.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:49.738 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.313 V. Piezo Error = -9.5 V.
17-03-17 20:51:49.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29430 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29430 (-128.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29424 (-128.6 uncal um), Max = 29434 (-128.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:51:49.738 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29430, posNoise = 4, negNoise = 6
17-03-17 20:51:49.738 -07 000000610 INF: Z Motor: After move to -0.129380, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:49.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:51:49.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:49.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:49.738 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:49.738 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:49.738 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:51:49.738 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:51:49.738 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:51:49.738 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:49.738 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:51:49.738 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:51:49.738 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:49.738 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:51:49.738 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:51:49.738 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:51:49.738 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:49.748 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:51:49.748 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:51:49.758 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:51:49.758 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:51:49.758 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:51:49.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28440 150\n [Camera]
17-03-17 20:51:49.958 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:51:50.378 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:51:50.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:51:50.378 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:50.378 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:51:50.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:51:50.378 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:50.388 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:50.388 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:51:50.388 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:50.388 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:51:50.568 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28440 806
17-03-17 20:51:50.718 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:51:50.768 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:51:50.768 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:51:50.768 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:50.768 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:51:50.768 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:51:50.768 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:50.768 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:51:50.768 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:51:50.768 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:51:50.778 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:51:50.928 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:51:50.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:51:50.928 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:50.928 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:51:50.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:51:50.928 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:50.938 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:50.938 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1092456552, 0x0, 391868352) start.
17-03-17 20:51:50.938 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:50.938 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:51:51.108 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:51:51.118 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:51:51.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28440 150' command took 2 ms to send, 1350 ms to get response, and 1357 ms overall
17-03-17 20:51:51.118 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:51:51.118 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.12938791534316. ------
17-03-17 20:51:51.118 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:51.118 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13557 mm
17-03-17 20:51:51.118 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:51:51.118 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:51:51.118 -07 000000459 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 20:51:51.118 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29616, sync = True, waitForSettling = False)
17-03-17 20:51:51.128 -07 000000502 INF: Z Motor: Moving to -0.135573 mm, started at -0.129388 mm, distance = -6.19 um
17-03-17 20:51:51.128 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:51.128 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:51:51.128 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:51.128 -07 000000462 INF: FPGA: Recv YRDPOS 146472
17-03-17 20:51:51.138 -07 000000459 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:51.138 -07 000000459 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:51.138 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:51:51.138 -07 000000459 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:51:51.138 -07 000000459 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:51:51.148 -07 000000502 INF: FPGA: Xmit ZDACW 29616\n [Z Motor]
17-03-17 20:51:51.148 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:51:51.158 -07 000000502 INF: FPGA: 'ZDACW 29616' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:51:51.158 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:51:51.168 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:51.168 -07 000000501 INF: FPGA: Recv ZDACR 29616
17-03-17 20:51:51.178 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:51:51.178 -07 000000502 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 20:51:51.328 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:51:51.328 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:51:51.328 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:51.328 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1092456552, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:51:51.328 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:51:51.328 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:51.338 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:51:51.338 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:51.338 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:51:51.338 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:51:51.338 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:51:51.348 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:51:51.528 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:51:51.528 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 20:51:51.568 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:51.568 -07 000000541 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:51:51.578 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:51:51.578 -07 000000459 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:51.578 -07 000000459 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:51:51.578 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-17 20:51:51.828 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:51:51.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:51:52.528 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:52.528 -07 000000541 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:51:52.538 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:51:52.538 -07 000000459 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:52.558 -07 000000459 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:51:52.558 -07 000000459 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:51:52.558 -07 000000459 INF: Y Motor: Moved to 72.3501 after 1434 ms (table move)
17-03-17 20:51:52.558 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135573 mm (DAC = 29616)
17-03-17 20:51:52.558 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:52.568 -07 000000541 INF: FPGA: Recv ZSGSRD 30398
17-03-17 20:51:52.568 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:51:52.568 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:52.568 -07 000000448 INF: FPGA: Recv ZSGSRD 30392
17-03-17 20:51:52.578 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:52.578 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:52.578 -07 000000501 INF: FPGA: Recv ZSGSRD 30395
17-03-17 20:51:52.588 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:52.588 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:52.588 -07 000000475 INF: FPGA: Recv ZSGSRD 30400
17-03-17 20:51:52.598 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:52.598 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:52.598 -07 000000462 INF: FPGA: Recv ZSGSRD 30393
17-03-17 20:51:52.608 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:52.608 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:52.608 -07 000000415 INF: FPGA: Recv ZSGSRD 30396
17-03-17 20:51:52.618 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:52.618 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:52.618 -07 000000459 INF: FPGA: Recv ZSGSRD 30393
17-03-17 20:51:52.628 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:52.628 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:52.628 -07 000000415 INF: FPGA: Recv ZSGSRD 30387
17-03-17 20:51:52.638 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:52.638 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:52.638 -07 000000459 INF: FPGA: Recv ZSGSRD 30385
17-03-17 20:51:52.648 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:52.648 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:52.648 -07 000000415 INF: FPGA: Recv ZSGSRD 30388
17-03-17 20:51:52.658 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:52.658 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:52.658 -07 000000501 INF: FPGA: Recv ZPIEZORD 26489
17-03-17 20:51:52.668 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:52.668 -07 000000424 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.519 V. Piezo Error = -8.6 V.
17-03-17 20:51:52.668 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30393 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30393 (-134.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30385 (-134.7 uncal um), Max = 30400 (-134.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:51:52.668 -07 000000424 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30393, posNoise = 7, negNoise = 8
17-03-17 20:51:52.668 -07 000000424 INF: Z Motor: After move to -0.135573, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:52.668 -07 000000424 INF: Z Motor: Settle wait time = 1437 ms, measure time = 103 ms (allowed 150 ms), total time = 1540 ms
17-03-17 20:51:52.668 -07 000000424 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:51:52.718 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 20:51:52.718 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:51:52.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:52.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:52.718 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:52.718 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:52.718 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:51:52.718 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:52.728 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:52.728 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:51:52.728 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:52.728 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:51:52.738 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:51:52.738 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:51:52.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:51:52.778 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:51:52.978 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:51:52.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:51:52.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:51:52.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) start.
17-03-17 20:51:53.018 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:51:53.018 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 20:51:53.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 280 ms to get response, and 287 ms overall
17-03-17 20:51:53.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1476890328, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:51:53.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:53.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:51:53.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:51:53.128 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:53.128 -07 000000459 INF: Autofocus start
17-03-17 20:51:53.128 -07 000000459 INF: MeasureProfile start
17-03-17 20:51:53.128 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:53.138 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:51:53.138 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:51:53.138 -07 000000459 INF: MeasureProfile done
17-03-17 20:51:53.138 -07 000000459 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:51:53.138 -07 000000459 INF: Autofocus finished
17-03-17 20:51:53.328 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.015368,
17-03-17 20:51:53.338 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:51:53.338 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 20:51:53.338 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135574431635676. ----------
17-03-17 20:51:53.338 -07 000000610 INF: Cycle	43	Tile	16	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:51:53.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28124, sync = True, waitForSettling = True)
17-03-17 20:51:53.348 -07 000000610 INF: Z Motor: Moving to -0.128743 mm, started at -0.135574 mm, distance = 6.83 um
17-03-17 20:51:53.368 -07 000000610 INF: FPGA: Xmit ZDACW 28124\n [Z Motor]
17-03-17 20:51:53.368 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 20:51:53.378 -07 000000610 INF: FPGA: 'ZDACW 28124' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:51:53.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:53.378 -07 000000415 INF: FPGA: Recv ZDACR 28124
17-03-17 20:51:53.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:53.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:51:53.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:53.538 -07 000000541 INF: FPGA: Recv ZSGSRD 29327
17-03-17 20:51:53.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:53.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:53.548 -07 000000448 INF: FPGA: Recv ZSGSRD 29333
17-03-17 20:51:53.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:53.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:53.558 -07 000000541 INF: FPGA: Recv ZSGSRD 29329
17-03-17 20:51:53.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:53.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:53.568 -07 000000502 INF: FPGA: Recv ZSGSRD 29333
17-03-17 20:51:53.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:53.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:53.578 -07 000000475 INF: FPGA: Recv ZSGSRD 29330
17-03-17 20:51:53.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:51:53.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:53.588 -07 000000424 INF: FPGA: Recv ZSGSRD 29331
17-03-17 20:51:53.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:53.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:53.598 -07 000000475 INF: FPGA: Recv ZSGSRD 29340
17-03-17 20:51:53.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:53.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:53.608 -07 000000459 INF: FPGA: Recv ZSGSRD 29330
17-03-17 20:51:53.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:53.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:53.618 -07 000000475 INF: FPGA: Recv ZSGSRD 29332
17-03-17 20:51:53.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:53.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:53.628 -07 000000415 INF: FPGA: Recv ZSGSRD 29329
17-03-17 20:51:53.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:53.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:53.638 -07 000000475 INF: FPGA: Recv ZPIEZORD 25015
17-03-17 20:51:53.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:53.648 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.291 V. Piezo Error = -9.5 V.
17-03-17 20:51:53.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29331 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29330 (-128.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29327 (-128.0 uncal um), Max = 29340 (-128.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:51:53.648 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29331, posNoise = 9, negNoise = 4
17-03-17 20:51:53.648 -07 000000610 INF: Z Motor: After move to -0.128743, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:53.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 299 ms)
17-03-17 20:51:53.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:53.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:53.648 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:53.648 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:53.648 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:51:53.648 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:51:53.648 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:51:53.648 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:53.648 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:51:53.648 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:51:53.648 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:53.648 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:51:53.648 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:51:53.648 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:51:53.648 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:51:53.648 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:51:53.668 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:51:53.668 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:51:53.668 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:51:53.668 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:51:53.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28300 150\n [Camera]
17-03-17 20:51:53.868 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:51:54.298 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 616
17-03-17 20:51:54.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 616
17-03-17 20:51:54.298 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:54.298 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:54.298 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 20:51:54.298 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 616
17-03-17 20:51:54.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 616
17-03-17 20:51:54.298 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:54.298 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:54.298 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1144753880, 0x0, 418435064) start.
17-03-17 20:51:54.488 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28300 806
17-03-17 20:51:54.638 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:51:54.688 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1144753880, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 20:51:54.688 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:51:54.688 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:54.688 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:51:54.688 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:51:54.688 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:54.698 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:54.698 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:54.698 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:51:54.698 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:51:54.838 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:51:54.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:51:54.838 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:54.838 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:54.838 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 20:51:54.838 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:51:54.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:51:54.838 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:54.838 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:54.838 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:51:55.028 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:51:55.028 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:51:55.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28300 150' command took 2 ms to send, 1346 ms to get response, and 1358 ms overall
17-03-17 20:51:55.138 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:51:55.138 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128751918341126. ------
17-03-17 20:51:55.148 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:55.148 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13525 mm
17-03-17 20:51:55.148 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:51:55.148 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:51:55.148 -07 000000501 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 20:51:55.148 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:55.148 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29546, sync = True, waitForSettling = False)
17-03-17 20:51:55.148 -07 000000462 INF: Z Motor: Moving to -0.135253 mm, started at -0.128752 mm, distance = -6.50 um
17-03-17 20:51:55.158 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:51:55.158 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:55.158 -07 000000382 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:51:55.168 -07 000000462 INF: FPGA: Xmit ZDACW 29546\n [Z Motor]
17-03-17 20:51:55.168 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:51:55.168 -07 000000501 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:55.168 -07 000000501 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:51:55.168 -07 000000501 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:51:55.168 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:51:55.178 -07 000000462 INF: FPGA: 'ZDACW 29546' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:51:55.178 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:51:55.188 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:51:55.198 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:55.198 -07 000000415 INF: FPGA: Recv ZDACR 29546
17-03-17 20:51:55.208 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:51:55.208 -07 000000462 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 20:51:55.228 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:51:55.228 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:51:55.238 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:55.238 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 20:51:55.238 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:51:55.238 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:55.238 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:51:55.238 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:51:55.238 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:51:55.248 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 20:51:55.378 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:51:55.378 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:51:55.558 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 20:51:55.558 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:51:55.598 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:55.598 -07 000000382 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:51:55.608 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:51:55.608 -07 000000501 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:55.608 -07 000000501 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 20:51:55.608 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 20:51:56.558 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:56.558 -07 000000541 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:51:56.568 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:56.568 -07 000000501 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:56.588 -07 000000501 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:51:56.588 -07 000000501 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:51:56.588 -07 000000501 INF: Y Motor: Moved to 73.1763 after 1437 ms (table move)
17-03-17 20:51:56.588 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135253 mm (DAC = 29546)
17-03-17 20:51:56.588 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:56.598 -07 000000458 INF: FPGA: Recv ZSGSRD 30358
17-03-17 20:51:56.598 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:51:56.598 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:56.598 -07 000000458 INF: FPGA: Recv ZSGSRD 30345
17-03-17 20:51:56.608 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:51:56.608 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:56.608 -07 000000458 INF: FPGA: Recv ZSGSRD 30343
17-03-17 20:51:56.618 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:56.618 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:56.618 -07 000000458 INF: FPGA: Recv ZSGSRD 30344
17-03-17 20:51:56.628 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:56.628 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:56.628 -07 000000458 INF: FPGA: Recv ZSGSRD 30346
17-03-17 20:51:56.638 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:56.638 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:56.638 -07 000000541 INF: FPGA: Recv ZSGSRD 30349
17-03-17 20:51:56.648 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:56.648 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:56.648 -07 000000458 INF: FPGA: Recv ZSGSRD 30343
17-03-17 20:51:56.658 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:56.658 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:56.658 -07 000000541 INF: FPGA: Recv ZSGSRD 30339
17-03-17 20:51:56.668 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:56.668 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:56.668 -07 000000458 INF: FPGA: Recv ZSGSRD 30344
17-03-17 20:51:56.678 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:56.678 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:56.678 -07 000000541 INF: FPGA: Recv ZSGSRD 30341
17-03-17 20:51:56.688 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:56.688 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:56.688 -07 000000541 INF: FPGA: Recv ZPIEZORD 26353
17-03-17 20:51:56.698 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:56.698 -07 000000448 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.508 V. Piezo Error = -8.8 V.
17-03-17 20:51:56.698 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30345 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30344 (-134.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30339 (-134.4 uncal um), Max = 30358 (-134.6 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:51:56.698 -07 000000448 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30345, posNoise = 13, negNoise = 6
17-03-17 20:51:56.698 -07 000000448 INF: Z Motor: After move to -0.135253, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:56.698 -07 000000448 INF: Z Motor: Settle wait time = 1440 ms, measure time = 104 ms (allowed 150 ms), total time = 1544 ms
17-03-17 20:51:56.698 -07 000000448 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:51:56.748 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 20:51:56.748 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:51:56.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:56.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:56.748 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:56.748 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:51:56.748 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:56.748 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:56.748 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:56.748 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:51:56.758 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:56.758 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:51:56.768 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:51:56.768 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:51:56.768 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:51:56.818 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:51:56.828 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:51:56.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:51:57.018 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:51:57.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:51:57.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:51:57.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:51:57.058 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:51:57.058 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:51:57.058 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 20:51:57.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 20:51:57.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:57.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:51:57.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 20:51:57.158 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:57.158 -07 000000459 INF: Autofocus start
17-03-17 20:51:57.158 -07 000000459 INF: MeasureProfile start
17-03-17 20:51:57.158 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:57.168 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:51:57.168 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:51:57.168 -07 000000459 INF: MeasureProfile done
17-03-17 20:51:57.168 -07 000000459 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:51:57.168 -07 000000459 INF: Autofocus finished
17-03-17 20:51:57.368 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:51:57.368 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:51:57.368 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135266069452871. ----------
17-03-17 20:51:57.368 -07 000000610 INF: Cycle	43	Tile	17	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:51:57.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28070, sync = True, waitForSettling = True)
17-03-17 20:51:57.378 -07 000000610 INF: Z Motor: Moving to -0.128496 mm, started at -0.135266 mm, distance = 6.77 um
17-03-17 20:51:57.378 -07 000000610 INF: FPGA: Xmit ZDACW 28070\n [Z Motor]
17-03-17 20:51:57.378 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:51:57.388 -07 000000610 INF: FPGA: 'ZDACW 28070' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:51:57.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:57.388 -07 000000502 INF: FPGA: Recv ZDACR 28070
17-03-17 20:51:57.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:57.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:51:57.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:57.548 -07 000000502 INF: FPGA: Recv ZSGSRD 29284
17-03-17 20:51:57.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:57.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:57.558 -07 000000462 INF: FPGA: Recv ZSGSRD 29294
17-03-17 20:51:57.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:57.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:57.568 -07 000000462 INF: FPGA: Recv ZSGSRD 29295
17-03-17 20:51:57.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:57.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:57.578 -07 000000462 INF: FPGA: Recv ZSGSRD 29287
17-03-17 20:51:57.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:57.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:57.588 -07 000000462 INF: FPGA: Recv ZSGSRD 29299
17-03-17 20:51:57.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:57.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:57.598 -07 000000501 INF: FPGA: Recv ZSGSRD 29289
17-03-17 20:51:57.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:57.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:57.608 -07 000000382 INF: FPGA: Recv ZSGSRD 29293
17-03-17 20:51:57.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:57.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:57.618 -07 000000382 INF: FPGA: Recv ZSGSRD 29286
17-03-17 20:51:57.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:57.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:57.628 -07 000000415 INF: FPGA: Recv ZSGSRD 29291
17-03-17 20:51:57.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:57.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:51:57.638 -07 000000415 INF: FPGA: Recv ZSGSRD 29301
17-03-17 20:51:57.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:57.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:51:57.648 -07 000000415 INF: FPGA: Recv ZPIEZORD 24982
17-03-17 20:51:57.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:51:57.658 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.283 V. Piezo Error = -9.5 V.
17-03-17 20:51:57.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29292 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29292 (-127.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29284 (-127.7 uncal um), Max = 29301 (-127.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:51:57.658 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29292, posNoise = 9, negNoise = 8
17-03-17 20:51:57.658 -07 000000610 INF: Z Motor: After move to -0.128496, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:51:57.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:51:57.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:51:57.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:51:57.658 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:51:57.658 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:51:57.658 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:51:57.658 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:51:57.658 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:51:57.658 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:51:57.658 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:51:57.658 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:51:57.658 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:51:57.658 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:51:57.668 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:51:57.668 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:51:57.668 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:51:57.668 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:51:57.678 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:51:57.678 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:51:57.678 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:51:57.678 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:51:57.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28247 150\n [Camera]
17-03-17 20:51:57.878 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:51:58.298 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:51:58.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:51:58.298 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:58.298 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:51:58.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:51:58.308 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:58.308 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:58.308 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:51:58.308 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:58.308 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:51:58.498 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28247 806
17-03-17 20:51:58.638 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:51:58.678 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 20:51:58.678 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 20:51:58.678 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:58.678 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 20:51:58.678 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:51:58.678 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:58.688 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.023489,
17-03-17 20:51:58.688 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:51:58.688 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:51:58.688 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:51:58.698 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:51:58.848 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:51:58.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:51:58.848 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:51:58.848 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:51:58.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:51:58.848 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:51:58.848 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:51:58.848 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 20:51:58.858 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:51:58.858 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 20:51:59.038 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1350
17-03-17 20:51:59.038 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:51:59.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28247 150' command took 2 ms to send, 1352 ms to get response, and 1357 ms overall
17-03-17 20:51:59.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:51:59.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128501374067597. ------
17-03-17 20:51:59.158 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:51:59.158 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13487 mm
17-03-17 20:51:59.158 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:51:59.158 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:51:59.158 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:51:59.158 -07 000000448 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 20:51:59.158 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29463, sync = True, waitForSettling = False)
17-03-17 20:51:59.158 -07 000000475 INF: Z Motor: Moving to -0.134873 mm, started at -0.128501 mm, distance = -6.37 um
17-03-17 20:51:59.168 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:51:59.168 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:59.168 -07 000000459 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:51:59.178 -07 000000475 INF: FPGA: Xmit ZDACW 29463\n [Z Motor]
17-03-17 20:51:59.178 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:51:59.178 -07 000000448 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:59.178 -07 000000448 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:51:59.178 -07 000000448 INF: Y Motor: Moving 1354 steps-33
17-03-17 20:51:59.178 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:51:59.188 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:51:59.188 -07 000000475 INF: FPGA: 'ZDACW 29463' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:51:59.198 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:51:59.208 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:51:59.208 -07 000000459 INF: FPGA: Recv ZDACR 29463
17-03-17 20:51:59.218 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:51:59.218 -07 000000475 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 20:51:59.238 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:51:59.238 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:51:59.238 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:59.238 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 20:51:59.238 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:51:59.238 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:51:59.248 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:59.248 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:51:59.248 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:51:59.258 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:51:59.388 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:51:59.388 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 223 ms overall
17-03-17 20:51:59.568 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 20:51:59.568 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:51:59.598 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:51:59.608 -07 000000502 INF: FPGA: Recv YRDPOS 151568
17-03-17 20:51:59.608 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:51:59.608 -07 000000448 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:51:59.608 -07 000000448 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 20:51:59.608 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 20:52:00.558 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:52:00.558 -07 000000424 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:52:00.568 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:52:00.568 -07 000000448 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:52:00.578 -07 000000448 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:52:00.578 -07 000000448 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:52:00.578 -07 000000448 INF: Y Motor: Moved to 74.0083 after 1421 ms (table move)
17-03-17 20:52:00.588 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134873 mm (DAC = 29463)
17-03-17 20:52:00.588 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:00.588 -07 000000458 INF: FPGA: Recv ZSGSRD 30289
17-03-17 20:52:00.598 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:00.598 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:00.598 -07 000000448 INF: FPGA: Recv ZSGSRD 30280
17-03-17 20:52:00.608 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:00.608 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:00.608 -07 000000608 INF: FPGA: Recv ZSGSRD 30279
17-03-17 20:52:00.618 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:00.618 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:00.618 -07 000000576 INF: FPGA: Recv ZSGSRD 30290
17-03-17 20:52:00.628 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:00.628 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:00.628 -07 000000462 INF: FPGA: Recv ZSGSRD 30285
17-03-17 20:52:00.638 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:00.638 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:00.638 -07 000000448 INF: FPGA: Recv ZSGSRD 30289
17-03-17 20:52:00.648 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:00.648 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:00.648 -07 000000608 INF: FPGA: Recv ZSGSRD 30288
17-03-17 20:52:00.658 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:00.658 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:00.658 -07 000000576 INF: FPGA: Recv ZSGSRD 30284
17-03-17 20:52:00.668 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:00.668 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:00.668 -07 000000462 INF: FPGA: Recv ZSGSRD 30287
17-03-17 20:52:00.678 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:00.678 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:00.678 -07 000000382 INF: FPGA: Recv ZSGSRD 30281
17-03-17 20:52:00.688 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:00.688 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:52:00.688 -07 000000415 INF: FPGA: Recv ZPIEZORD 26312
17-03-17 20:52:00.698 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:00.698 -07 000000541 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.496 V. Piezo Error = -8.7 V.
17-03-17 20:52:00.698 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30285 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30286 (-134.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30279 (-134.1 uncal um), Max = 30290 (-134.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:52:00.698 -07 000000541 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30285, posNoise = 5, negNoise = 6
17-03-17 20:52:00.698 -07 000000541 INF: Z Motor: After move to -0.134873, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:52:00.698 -07 000000541 INF: Z Motor: Settle wait time = 1424 ms, measure time = 110 ms (allowed 150 ms), total time = 1534 ms
17-03-17 20:52:00.698 -07 000000541 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 20:52:00.738 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 20:52:00.738 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:52:00.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:52:00.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:52:00.738 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:52:00.738 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:52:00.738 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:52:00.738 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:52:00.738 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 20:52:00.738 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:52:00.748 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:52:00.748 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:52:00.748 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:52:00.748 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 20:52:00.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:52:00.798 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:52:00.998 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:52:00.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:52:00.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:52:00.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:52:01.038 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:52:01.038 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 20:52:01.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:52:01.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:52:01.118 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:52:01.118 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:52:01.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:52:01.138 -07 000000459 INF: Autofocus start
17-03-17 20:52:01.138 -07 000000459 INF: MeasureProfile start
17-03-17 20:52:01.138 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:52:01.138 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:52:01.148 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:52:01.148 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:52:01.148 -07 000000459 INF: MeasureProfile done
17-03-17 20:52:01.148 -07 000000459 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:52:01.148 -07 000000459 INF: Autofocus finished
17-03-17 20:52:01.348 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:52:01.348 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 20:52:01.358 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134880616724366. ----------
17-03-17 20:52:01.358 -07 000000610 INF: Cycle	43	Tile	18	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:52:01.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27957, sync = True, waitForSettling = True)
17-03-17 20:52:01.358 -07 000000610 INF: Z Motor: Moving to -0.127979 mm, started at -0.134881 mm, distance = 6.90 um
17-03-17 20:52:01.358 -07 000000610 INF: FPGA: Xmit ZDACW 27957\n [Z Motor]
17-03-17 20:52:01.368 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:52:01.368 -07 000000610 INF: FPGA: 'ZDACW 27957' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:52:01.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:52:01.368 -07 000000502 INF: FPGA: Recv ZDACR 27957
17-03-17 20:52:01.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:52:01.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:52:01.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:01.528 -07 000000415 INF: FPGA: Recv ZSGSRD 29216
17-03-17 20:52:01.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:52:01.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:01.538 -07 000000382 INF: FPGA: Recv ZSGSRD 29216
17-03-17 20:52:01.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:01.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:01.548 -07 000000501 INF: FPGA: Recv ZSGSRD 29212
17-03-17 20:52:01.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:01.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:01.558 -07 000000462 INF: FPGA: Recv ZSGSRD 29214
17-03-17 20:52:01.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:01.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:01.568 -07 000000541 INF: FPGA: Recv ZSGSRD 29215
17-03-17 20:52:01.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:01.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:01.578 -07 000000382 INF: FPGA: Recv ZSGSRD 29209
17-03-17 20:52:01.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:01.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:01.588 -07 000000448 INF: FPGA: Recv ZSGSRD 29209
17-03-17 20:52:01.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:01.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:01.598 -07 000000424 INF: FPGA: Recv ZSGSRD 29212
17-03-17 20:52:01.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:01.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:01.608 -07 000000576 INF: FPGA: Recv ZSGSRD 29215
17-03-17 20:52:01.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:01.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:01.618 -07 000000415 INF: FPGA: Recv ZSGSRD 29207
17-03-17 20:52:01.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:01.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:52:01.628 -07 000000458 INF: FPGA: Recv ZPIEZORD 24909
17-03-17 20:52:01.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:01.638 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.266 V. Piezo Error = -9.4 V.
17-03-17 20:52:01.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29212 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29213 (-127.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29207 (-127.2 uncal um), Max = 29216 (-127.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:52:01.638 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29212, posNoise = 4, negNoise = 5
17-03-17 20:52:01.638 -07 000000610 INF: Z Motor: After move to -0.127979, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:52:01.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 20:52:01.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:52:01.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:52:01.638 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:52:01.638 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:52:01.638 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:52:01.638 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:52:01.638 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:52:01.638 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:52:01.638 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 20:52:01.638 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:52:01.638 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:52:01.638 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:52:01.648 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:52:01.648 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:52:01.648 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:52:01.648 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:52:01.658 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:52:01.658 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:52:01.658 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:52:01.658 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:52:01.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28134 150\n [Camera]
17-03-17 20:52:01.818 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:52:01.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:52:01.858 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:52:02.278 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:52:02.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:52:02.278 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:52:02.288 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:52:02.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:52:02.288 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:52:02.288 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:52:02.288 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:52:02.288 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:52:02.288 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:52:02.478 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28134 806
17-03-17 20:52:02.628 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:52:02.668 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 20:52:02.668 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:52:02.668 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:52:02.668 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:52:02.668 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:52:02.668 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:52:02.668 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:52:02.668 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:52:02.668 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:52:02.678 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:52:02.828 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-17 20:52:02.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-17 20:52:02.828 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:52:02.828 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-17 20:52:02.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-17 20:52:02.838 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:52:02.838 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:52:02.838 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1073909352, 0x0, 391868352) start.
17-03-17 20:52:02.838 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:52:02.838 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:52:03.018 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-17 20:52:03.018 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:52:03.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28134 150' command took 2 ms to send, 1355 ms to get response, and 1358 ms overall
17-03-17 20:52:03.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:52:03.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127987437096256. ------
17-03-17 20:52:03.018 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:52:03.018 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13433 mm
17-03-17 20:52:03.028 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:52:03.028 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:52:03.028 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:52:03.028 -07 000000502 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 20:52:03.028 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29345, sync = True, waitForSettling = False)
17-03-17 20:52:03.028 -07 000000541 INF: Z Motor: Moving to -0.134333 mm, started at -0.127987 mm, distance = -6.35 um
17-03-17 20:52:03.038 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:52:03.038 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:52:03.038 -07 000000415 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:52:03.048 -07 000000541 INF: FPGA: Xmit ZDACW 29345\n [Z Motor]
17-03-17 20:52:03.048 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:52:03.048 -07 000000502 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:52:03.048 -07 000000502 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:52:03.048 -07 000000502 INF: Y Motor: Moving 1351 steps-30
17-03-17 20:52:03.048 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:52:03.058 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:52:03.058 -07 000000541 INF: FPGA: 'ZDACW 29345' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:52:03.068 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:52:03.078 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:52:03.078 -07 000000382 INF: FPGA: Recv ZDACR 29345
17-03-17 20:52:03.088 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:52:03.088 -07 000000541 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 20:52:03.238 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1073909352, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:52:03.238 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:52:03.238 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:52:03.238 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:52:03.238 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:52:03.238 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:52:03.238 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:52:03.238 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 20:52:03.248 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:52:03.248 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 20:52:03.258 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:52:03.258 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:52:03.438 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 20:52:03.438 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:52:03.468 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:52:03.468 -07 000000458 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:52:03.478 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:52:03.478 -07 000000502 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:52:03.478 -07 000000502 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 20:52:03.478 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-17 20:52:04.058 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.001704,
17-03-17 20:52:04.428 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:52:04.428 -07 000000608 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:52:04.438 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:52:04.438 -07 000000502 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:52:04.448 -07 000000502 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:52:04.448 -07 000000502 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:52:04.448 -07 000000502 INF: Y Motor: Moved to 74.8325 after 1420 ms (table move)
17-03-17 20:52:04.458 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134333 mm (DAC = 29345)
17-03-17 20:52:04.458 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:04.458 -07 000000502 INF: FPGA: Recv ZSGSRD 30207
17-03-17 20:52:04.468 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:04.468 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:04.468 -07 000000502 INF: FPGA: Recv ZSGSRD 30199
17-03-17 20:52:04.478 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:04.478 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:04.478 -07 000000541 INF: FPGA: Recv ZSGSRD 30196
17-03-17 20:52:04.488 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:04.488 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:04.488 -07 000000541 INF: FPGA: Recv ZSGSRD 30201
17-03-17 20:52:04.498 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:04.498 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:04.498 -07 000000502 INF: FPGA: Recv ZSGSRD 30202
17-03-17 20:52:04.508 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:04.508 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:04.508 -07 000000541 INF: FPGA: Recv ZSGSRD 30211
17-03-17 20:52:04.518 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:04.518 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:04.518 -07 000000502 INF: FPGA: Recv ZSGSRD 30203
17-03-17 20:52:04.528 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:04.528 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:04.528 -07 000000502 INF: FPGA: Recv ZSGSRD 30204
17-03-17 20:52:04.538 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:04.538 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:04.538 -07 000000502 INF: FPGA: Recv ZSGSRD 30201
17-03-17 20:52:04.548 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:04.548 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:04.548 -07 000000541 INF: FPGA: Recv ZSGSRD 30196
17-03-17 20:52:04.558 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:04.558 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:52:04.558 -07 000000502 INF: FPGA: Recv ZPIEZORD 26208
17-03-17 20:52:04.568 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:04.568 -07 000000475 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.478 V. Piezo Error = -8.8 V.
17-03-17 20:52:04.568 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30202 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30202 (-133.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30196 (-133.5 uncal um), Max = 30211 (-133.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:52:04.568 -07 000000475 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30202, posNoise = 9, negNoise = 6
17-03-17 20:52:04.568 -07 000000475 INF: Z Motor: After move to -0.134333, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:52:04.568 -07 000000475 INF: Z Motor: Settle wait time = 1424 ms, measure time = 110 ms (allowed 150 ms), total time = 1534 ms
17-03-17 20:52:04.568 -07 000000475 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 20:52:04.608 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 20:52:04.608 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:52:04.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:52:04.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:52:04.608 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:52:04.608 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:52:04.608 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:52:04.608 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:52:04.608 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:52:04.618 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:52:04.618 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:52:04.618 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:52:04.618 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:52:04.618 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:52:04.628 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:52:04.668 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:52:04.868 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:52:04.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:52:04.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:52:04.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1109331616, 0x0, 559484976) start.
17-03-17 20:52:04.908 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:52:04.908 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 20:52:04.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:52:04.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1109331616, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:52:04.998 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:52:04.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:52:04.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:52:05.108 -07 000000501 INF: Autofocus start
17-03-17 20:52:05.108 -07 000000501 INF: MeasureProfile start
17-03-17 20:52:05.108 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:52:05.108 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:52:05.118 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:52:05.118 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:52:05.128 -07 000000501 INF: MeasureProfile done
17-03-17 20:52:05.128 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:52:05.128 -07 000000501 INF: Autofocus finished
17-03-17 20:52:05.318 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:52:05.318 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:52:05.318 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134347407116599. ----------
17-03-17 20:52:05.318 -07 000000610 INF: Cycle	43	Tile	19	Exposure Settings		A	421	G	202	T	202	C	421
17-03-17 20:52:05.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27869, sync = True, waitForSettling = True)
17-03-17 20:52:05.328 -07 000000610 INF: Z Motor: Moving to -0.127576 mm, started at -0.134347 mm, distance = 6.77 um
17-03-17 20:52:05.328 -07 000000610 INF: FPGA: Xmit ZDACW 27869\n [Z Motor]
17-03-17 20:52:05.328 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:52:05.338 -07 000000610 INF: FPGA: 'ZDACW 27869' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:52:05.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:52:05.338 -07 000000576 INF: FPGA: Recv ZDACR 27869
17-03-17 20:52:05.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:05.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:52:05.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:05.498 -07 000000576 INF: FPGA: Recv ZSGSRD 29147
17-03-17 20:52:05.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:05.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:05.508 -07 000000576 INF: FPGA: Recv ZSGSRD 29149
17-03-17 20:52:05.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:05.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:05.518 -07 000000576 INF: FPGA: Recv ZSGSRD 29148
17-03-17 20:52:05.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:05.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:05.528 -07 000000576 INF: FPGA: Recv ZSGSRD 29149
17-03-17 20:52:05.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:05.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:05.538 -07 000000576 INF: FPGA: Recv ZSGSRD 29147
17-03-17 20:52:05.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:05.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:05.548 -07 000000475 INF: FPGA: Recv ZSGSRD 29150
17-03-17 20:52:05.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:05.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:05.558 -07 000000448 INF: FPGA: Recv ZSGSRD 29150
17-03-17 20:52:05.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:05.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:05.568 -07 000000448 INF: FPGA: Recv ZSGSRD 29150
17-03-17 20:52:05.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:05.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:05.578 -07 000000448 INF: FPGA: Recv ZSGSRD 29148
17-03-17 20:52:05.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:05.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:52:05.588 -07 000000448 INF: FPGA: Recv ZSGSRD 29147
17-03-17 20:52:05.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:05.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:52:05.598 -07 000000448 INF: FPGA: Recv ZPIEZORD 24836
17-03-17 20:52:05.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:05.608 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.253 V. Piezo Error = -9.5 V.
17-03-17 20:52:05.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29148 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29148 (-126.8 uncal um), StdDev = 1 (0.0 uncal um), Range = 3 (0.0 uncal um), Min = 29147 (-126.8 uncal um), Max = 29150 (-126.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 1 (0.0 uncal um)
17-03-17 20:52:05.608 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29148, posNoise = 2, negNoise = 1
17-03-17 20:52:05.608 -07 000000610 INF: Z Motor: After move to -0.127576, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:52:05.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:52:05.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:52:05.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:52:05.608 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:52:05.608 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:52:05.608 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:52:05.608 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:52:05.608 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:52:05.608 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:52:05.608 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:52:05.608 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:52:05.618 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:52:05.618 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:52:05.618 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:52:05.618 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:52:05.618 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:52:05.618 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:52:05.628 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:52:05.628 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:52:05.628 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:52:05.628 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:52:05.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 421 421 202 202 28046 150\n [Camera]
17-03-17 20:52:05.838 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:52:06.258 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 613
17-03-17 20:52:06.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 613
17-03-17 20:52:06.258 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:52:06.258 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:52:06.258 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 20:52:06.258 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 613
17-03-17 20:52:06.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 613
17-03-17 20:52:06.258 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:52:06.258 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:52:06.258 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1144753880, 0x0, 418435064) start.
17-03-17 20:52:06.448 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28046 806
17-03-17 20:52:06.598 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 956
17-03-17 20:52:06.638 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:52:06.638 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:52:06.638 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:52:06.638 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1144753880, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:52:06.638 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:52:06.638 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:52:06.638 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:52:06.638 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:52:06.648 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:52:06.648 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:52:06.798 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1158
17-03-17 20:52:06.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1158
17-03-17 20:52:06.798 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:52:06.798 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:52:06.798 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 20:52:06.808 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1158
17-03-17 20:52:06.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1158
17-03-17 20:52:06.808 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:52:06.808 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:52:06.808 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:52:06.818 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:52:06.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 42. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:52:06.988 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1351
17-03-17 20:52:06.988 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:52:06.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 421 421 202 202 28046 150' command took 2 ms to send, 1349 ms to get response, and 1357 ms overall
17-03-17 20:52:07.198 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 20:52:07.198 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:52:07.198 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:52:07.198 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:52:07.198 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:52:07.198 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:52:07.198 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:52:07.208 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:52:07.208 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:52:07.208 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:52:07.208 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:52:07.248 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:52:07.248 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:52:07.288 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 20:52:07.418 -07 000000610 INF: Enabling Skipping AutoFocus in the next 1 cycles.
17-03-17 20:52:07.418 -07 000000610 INF: Imaging Cycle 43: ScanTilesCommand Cycle 43 time end. Duration was 166142 ms.
17-03-17 20:52:07.418 -07 000000610 INF: =================== Cycle #43 ===================
17-03-17 20:52:07.418 -07 000000610 INF: ===================  ===================
17-03-17 20:52:07.418 -07 000000459 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:52:07.428 -07 000000576 INF: FPGA: Recv EXLED1ADCR 25
17-03-17 20:52:07.428 -07 000000459 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:52:07.428 -07 000000459 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-17 20:52:07.428 -07 000000459 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 43, FrontChillerTemperature: 4.001704, FrontChillerHeatSinkTemperature: 0.209759, AmbientTemperature: 19.03399, FlowCellCompartmentTemperature: 22.0027, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.80649, GreenLEDSensorTemperature: 26.29929, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-17 20:52:07.458 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.