17-03-17 20:52:07.508 -07 000000610 INF: =================== Cycle #44 ===================
17-03-17 20:52:07.508 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 20:52:07.508 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 20:52:07.508 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:52:07.508 -07 000000501 INF: FPGA: Recv YRDPOS 153257
17-03-17 20:52:07.518 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:52:07.518 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:52:07.518 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 20:52:07.518 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 20:52:07.518 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 20:52:07.628 -07 000000502 INF: FPGA: Recv YMVTO 154378 871
17-03-17 20:52:07.628 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 106 ms to get response, and 116 ms overall
17-03-17 20:52:07.628 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 20:52:07.628 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 20:52:07.628 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 20:52:09.438 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.999021,
17-03-17 20:52:10.628 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:52:10.628 -07 000000541 INF: FPGA: Recv YRDPOS 154380
17-03-17 20:52:10.638 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:10.638 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:52:10.658 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:52:10.658 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 20:52:10.658 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3144 ms
17-03-17 20:52:10.658 -07 000000610 INF: =================== Cycle #44, Flow Cell Temp 60° ===================
17-03-17 20:52:10.658 -07 000000610 INF: =================== Cycle #44, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 20:52:10.658 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 20:52:10.668 -07 000000541 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:52:10.668 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:52:10.668 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:52:10.668 -07 000000501 INF: FPGA: Recv TEC2EN 
17-03-17 20:52:10.678 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:52:10.678 -07 000000610 INF: =================== Cycle #44, Flow Cell Temp 60° ===================
17-03-17 20:52:10.678 -07 000000610 INF: =================== Cycle #44 ===================
17-03-17 20:52:10.678 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:52:10.678 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:52:10.708 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:52:10.708 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 20:52:10.708 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:52:11.008 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:52:11.028 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:52:11.028 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:52:11.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:52:11.098 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:52:11.098 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:52:11.198 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3) ===================
17-03-17 20:52:11.198 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:52:11.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:52:11.228 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:52:11.228 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:52:11.228 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:52:11.358 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:52:11.398 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:52:11.818 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:52:11.818 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=619, R2=641, Total=1260. Warn if over 250 bubbles per interval.
17-03-17 20:52:14.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:14.558 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:52:14.798 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.988112,
17-03-17 20:52:14.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:15.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:52:15.428 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:15.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:52:15.458 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:52:15.458 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3) ===================
17-03-17 20:52:15.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:52:15.618 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:52:15.618 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:52:15.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:52:15.778 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:52:15.778 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:52:15.778 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:52:15.908 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:52:15.938 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:52:16.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:16.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:52:16.398 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:52:16.398 -07 000000610 INF: =================== Cycle #44 ===================
17-03-17 20:52:16.818 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 8 R1 7
17-03-17 20:52:16.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=7, R2=8, Total=15. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=626, R2=649, Total=1275. Warn if over 250 bubbles per interval.
17-03-17 20:52:17.618 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:52:17.618 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 20:52:17.618 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:52:17.638 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:52:17.638 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 20:52:17.638 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 20:52:17.768 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:52:17.788 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 20:52:17.788 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 20:52:17.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:52:17.858 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:52:17.858 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:52:17.958 -07 000000610 INF: =================== Cycle #44, Pumping Reagent CMS (4) ===================
17-03-17 20:52:17.958 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:52:17.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:52:17.998 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:52:17.998 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:52:17.998 -07 000000610 INF: =================== Cycle #44, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 20:52:18.128 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:52:18.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:52:19.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:19.638 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:52:20.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:20.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:52:20.088 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:52:20.088 -07 000000610 INF: =================== Cycle #44, Pumping Reagent CMS (4) ===================
17-03-17 20:52:20.168 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.011254,
17-03-17 20:52:20.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:52:20.248 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:52:20.248 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:52:20.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:52:20.408 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:52:20.408 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:52:20.408 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:52:20.538 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:52:20.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:52:20.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:21.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:52:21.028 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:52:21.028 -07 000000610 INF: =================== Cycle #44 ===================
17-03-17 20:52:21.818 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 7
17-03-17 20:52:21.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=7, R2=4, Total=11. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=633, R2=653, Total=1286. Warn if over 250 bubbles per interval.
17-03-17 20:52:22.248 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 20:52:22.248 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:52:22.248 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:52:22.268 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 20:52:22.268 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 20:52:22.268 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 20:52:22.418 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:52:22.438 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 20:52:22.438 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 20:52:22.488 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:52:22.508 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:52:22.508 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:52:22.608 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3) ===================
17-03-17 20:52:22.608 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:52:22.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:52:22.638 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:52:22.638 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:52:22.638 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:52:22.768 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:52:22.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:52:23.678 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:23.708 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:52:23.708 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:52:23.708 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3) ===================
17-03-17 20:52:23.838 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:52:23.868 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:52:23.868 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:52:23.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:52:24.028 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:52:24.028 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:52:24.028 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:52:24.158 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:52:24.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:52:24.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:24.648 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:52:24.648 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:52:24.648 -07 000000610 INF: =================== Cycle #44 ===================
17-03-17 20:52:24.648 -07 000000458 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:52:24.648 -07 000000608 INF: WaitCommand(10000) start
17-03-17 20:52:24.648 -07 000000458 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:52:25.538 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.994908,
17-03-17 20:52:25.868 -07 000000458 INF: AsyncDelayTimer waited 1215ms
17-03-17 20:52:25.868 -07 000000458 INF: LanePump: Xmit /1?\r
17-03-17 20:52:25.898 -07 000000458 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:52:25.898 -07 000000458 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:52:26.028 -07 000000458 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:52:26.068 -07 000000458 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:52:26.818 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 1
17-03-17 20:52:26.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=1, R2=3, Total=4. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=634, R2=656, Total=1290. Warn if over 250 bubbles per interval.
17-03-17 20:52:27.598 -07 000000458 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:27.628 -07 000000458 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:52:28.048 -07 000000458 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:28.078 -07 000000458 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:52:28.078 -07 000000458 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:52:28.078 -07 000000458 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:52:28.078 -07 000000458 INF: ===================  ===================
17-03-17 20:52:30.908 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.020806,
17-03-17 20:52:31.818 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 20:52:31.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=634, R2=657, Total=1291. Warn if over 250 bubbles per interval.
17-03-17 20:52:34.658 -07 000000608 INF: WaitCommand(10000) end
17-03-17 20:52:34.658 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3) ===================
17-03-17 20:52:34.658 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 20:52:34.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:52:34.698 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:52:34.698 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:52:34.698 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:52:34.828 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 20:52:34.868 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:52:36.278 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.001704,
17-03-17 20:52:36.828 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 20:52:36.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=635, R2=658, Total=1293. Warn if over 250 bubbles per interval.
17-03-17 20:52:40.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:41.028 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:52:41.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:41.478 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:52:41.658 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.985358,
17-03-17 20:52:41.828 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 10 R1 10
17-03-17 20:52:41.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=10, R2=10, Total=20. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=645, R2=668, Total=1313. Warn if over 250 bubbles per interval.
17-03-17 20:52:41.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:41.928 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:52:42.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:42.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:52:42.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:42.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:52:42.828 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 20:52:42.828 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3) ===================
17-03-17 20:52:42.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:52:42.988 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:52:42.988 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:52:43.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:52:43.148 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:52:43.148 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:52:43.148 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:52:43.278 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:52:43.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:52:43.738 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:43.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:52:43.768 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:52:43.768 -07 000000610 INF: =================== Cycle #44 ===================
17-03-17 20:52:44.988 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 20:52:44.988 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 20:52:44.988 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:52:45.008 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:52:45.008 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 20:52:45.008 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 20:52:45.218 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:52:45.238 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 20:52:45.238 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 20:52:45.288 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:52:45.308 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:52:45.308 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:52:45.408 -07 000000610 INF: =================== Cycle #44, Pumping Reagent IMT (1) ===================
17-03-17 20:52:45.408 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:52:45.408 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:52:45.438 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 20:52:45.438 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 20:52:45.438 -07 000000610 INF: =================== Cycle #44, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 20:52:45.568 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:52:45.608 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:52:46.828 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 20:52:46.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:52:47.018 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.974486,
17-03-17 20:52:47.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:47.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:52:47.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:47.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:52:47.528 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:52:47.528 -07 000000610 INF: =================== Cycle #44, Pumping Reagent IMT (1) ===================
17-03-17 20:52:47.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:52:47.688 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:52:47.688 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:52:47.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:52:47.848 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:52:47.848 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:52:47.848 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:52:47.978 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:52:48.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:52:48.438 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:48.468 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:52:48.468 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:52:48.468 -07 000000610 INF: =================== Cycle #44 ===================
17-03-17 20:52:49.688 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 20:52:49.688 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:52:49.688 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:52:49.708 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 20:52:49.708 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 20:52:49.708 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:52:49.938 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:52:49.958 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 20:52:49.958 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 20:52:50.008 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:52:50.028 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:52:50.028 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:52:50.128 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3) ===================
17-03-17 20:52:50.128 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:52:50.128 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:52:50.158 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 20:52:50.158 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 20:52:50.158 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:52:50.288 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:52:50.328 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:52:51.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:51.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:52:51.228 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:52:51.228 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3) ===================
17-03-17 20:52:51.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:52:51.388 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:52:51.388 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:52:51.518 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:52:51.548 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:52:51.548 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:52:51.548 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:52:51.678 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:52:51.708 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:52:51.828 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:52:51.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:52:52.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:52:52.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:52:52.168 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:52:52.168 -07 000000610 INF: =================== Cycle #44 ===================
17-03-17 20:52:52.168 -07 000000610 INF: =================== Cycle #44, Flow Cell Temp 65° ===================
17-03-17 20:52:52.168 -07 000000610 INF: =================== Cycle #44, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 20:52:52.168 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 20:52:52.168 -07 000000608 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:52:52.178 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:52:52.178 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:52:52.178 -07 000000501 INF: FPGA: Recv TEC2EN 
17-03-17 20:52:52.188 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:52:52.188 -07 000000610 INF: =================== Cycle #44, Flow Cell Temp 65° ===================
17-03-17 20:52:52.188 -07 000000610 INF: =================== Cycle #44 ===================
17-03-17 20:52:52.188 -07 000000610 INF: WaitCommand(30000) start
17-03-17 20:52:52.398 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.983999,
17-03-17 20:52:56.828 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:52:56.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:52:57.758 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.971733,
17-03-17 20:53:01.828 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:53:01.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:53:03.128 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.008536,
17-03-17 20:53:06.828 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:53:06.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:53:08.498 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.999021,
17-03-17 20:53:11.828 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:53:11.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:53:13.868 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.012614,
17-03-17 20:53:16.828 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:53:16.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:53:19.238 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.983999,
17-03-17 20:53:21.828 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:53:21.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:53:22.198 -07 000000610 INF: WaitCommand(30000) end
17-03-17 20:53:22.198 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3) ===================
17-03-17 20:53:22.198 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 20:53:22.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:53:22.328 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 20:53:22.328 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 20:53:22.328 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:53:22.458 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 20:53:22.498 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:53:23.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:53:23.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:53:23.068 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-17 20:53:23.068 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3) ===================
17-03-17 20:53:23.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:53:23.228 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:53:23.228 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:53:23.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:53:23.388 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:53:23.388 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:53:23.388 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:53:23.518 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:53:23.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:53:23.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:53:24.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:53:24.008 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:53:24.008 -07 000000610 INF: =================== Cycle #44 ===================
17-03-17 20:53:24.008 -07 000000576 INF: WaitCommand(30000) start
17-03-17 20:53:24.008 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:53:24.008 -07 000000501 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:53:24.608 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.015368,
17-03-17 20:53:25.228 -07 000000501 INF: AsyncDelayTimer waited 1216ms
17-03-17 20:53:25.228 -07 000000501 INF: LanePump: Xmit /1?\r
17-03-17 20:53:25.258 -07 000000501 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 20:53:25.258 -07 000000501 INF: LanePump: Current Position of Pump is: 1920
17-03-17 20:53:25.388 -07 000000501 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:53:25.428 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:53:26.828 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:53:26.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:53:27.768 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-17 20:53:27.798 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:53:28.218 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-17 20:53:28.248 -07 000000501 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:53:28.248 -07 000000501 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 20:53:28.248 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:53:28.248 -07 000000501 INF: ===================  ===================
17-03-17 20:53:29.988 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.014009,
17-03-17 20:53:31.828 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:53:31.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:53:35.348 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.003063,
17-03-17 20:53:36.828 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:53:36.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:53:40.728 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.997626,
17-03-17 20:53:41.828 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:53:41.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:53:46.088 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.996267,
17-03-17 20:53:46.828 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:53:46.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:53:51.468 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.983999,
17-03-17 20:53:51.828 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:53:51.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:53:54.018 -07 000000576 INF: WaitCommand(30000) end
17-03-17 20:53:54.018 -07 000000610 INF: =================== Cycle #44, Flow Cell Temp 22° ===================
17-03-17 20:53:54.018 -07 000000610 INF: =================== Cycle #44, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 20:53:54.018 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 20:53:54.028 -07 000000459 INF: FPGA: Recv TEC2TEMP 
17-03-17 20:53:54.028 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:53:54.028 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 20:53:54.028 -07 000000608 INF: FPGA: Recv TEC2EN 
17-03-17 20:53:54.038 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:53:54.038 -07 000000610 INF: =================== Cycle #44, Flow Cell Temp 22° ===================
17-03-17 20:53:54.038 -07 000000610 INF: =================== Cycle #44 ===================
17-03-17 20:53:54.038 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3) ===================
17-03-17 20:53:54.038 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 20:53:54.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:53:54.078 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 20:53:54.078 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 20:53:54.078 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:53:54.208 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 20:53:54.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:53:56.828 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.989471,
17-03-17 20:53:56.828 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:53:56.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:53:57.378 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:53:57.408 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:53:57.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:53:57.858 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:53:58.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:53:58.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:53:58.308 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 20:53:58.308 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3) ===================
17-03-17 20:53:58.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:53:58.468 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:53:58.468 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:53:58.598 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:53:58.628 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:53:58.628 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:53:58.628 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:53:58.758 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:53:58.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:53:59.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:53:59.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:53:59.248 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:53:59.248 -07 000000610 INF: =================== Cycle #44 ===================
17-03-17 20:54:00.468 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 20:54:00.468 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 20:54:00.468 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:54:00.488 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:54:00.488 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 20:54:00.488 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 20:54:00.638 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:54:00.658 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:54:00.658 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:54:00.708 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:54:00.728 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:54:00.728 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:54:00.828 -07 000000610 INF: =================== Cycle #44, Pumping Reagent USM (2) ===================
17-03-17 20:54:00.828 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 20:54:00.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:54:00.858 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 20:54:00.858 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 20:54:00.858 -07 000000610 INF: =================== Cycle #44, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 20:54:00.988 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 20:54:01.028 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:54:01.828 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:54:01.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:54:02.198 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.994908,
17-03-17 20:54:02.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:54:02.498 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:54:02.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:54:02.948 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:54:02.948 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 20:54:02.948 -07 000000610 INF: =================== Cycle #44, Pumping Reagent USM (2) ===================
17-03-17 20:54:03.078 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:54:03.108 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:54:03.108 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:54:03.238 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:54:03.268 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:54:03.268 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:54:03.268 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:54:03.398 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:54:03.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:54:03.858 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:54:03.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:54:03.888 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 20:54:03.888 -07 000000610 INF: =================== Cycle #44 ===================
17-03-17 20:54:05.108 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 20:54:05.108 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 20:54:05.108 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:54:05.128 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 20:54:05.128 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 20:54:05.128 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 20:54:05.278 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:54:05.298 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 20:54:05.298 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 20:54:05.348 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:54:05.368 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:54:05.368 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 20:54:05.468 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3) ===================
17-03-17 20:54:05.468 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 20:54:05.468 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:54:05.498 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 20:54:05.498 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 20:54:05.498 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 20:54:05.628 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 20:54:05.668 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:54:06.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:54:06.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:54:06.568 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 20:54:06.568 -07 000000610 INF: =================== Cycle #44, Pumping Reagent PR2 (3) ===================
17-03-17 20:54:06.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:54:06.728 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:54:06.728 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:54:06.828 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:54:06.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:54:06.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 20:54:06.888 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:54:06.888 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:54:06.888 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 20:54:07.018 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 20:54:07.048 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:54:07.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 20:54:07.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:54:07.508 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 20:54:07.508 -07 000000610 INF: =================== Cycle #44 ===================
17-03-17 20:54:07.508 -07 000000608 INF: WaitCommand(10000) start
17-03-17 20:54:07.508 -07 000000448 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:54:07.508 -07 000000448 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 20:54:07.568 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.994908,
17-03-17 20:54:08.728 -07 000000448 INF: AsyncDelayTimer waited 1215ms
17-03-17 20:54:08.728 -07 000000448 INF: LanePump: Xmit /1?\r
17-03-17 20:54:08.758 -07 000000448 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 20:54:08.758 -07 000000448 INF: LanePump: Current Position of Pump is: 1110
17-03-17 20:54:08.888 -07 000000448 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 20:54:08.928 -07 000000448 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:54:10.458 -07 000000448 INF: LanePump: Xmit /1Q\r
17-03-17 20:54:10.488 -07 000000448 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 20:54:10.908 -07 000000448 INF: LanePump: Xmit /1Q\r
17-03-17 20:54:10.938 -07 000000448 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 20:54:10.938 -07 000000448 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 20:54:10.938 -07 000000448 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 20:54:10.938 -07 000000448 INF: ===================  ===================
17-03-17 20:54:11.828 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:54:11.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:54:12.938 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.996267,
17-03-17 20:54:16.828 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:54:16.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:54:17.518 -07 000000608 INF: WaitCommand(10000) end
17-03-17 20:54:17.518 -07 000000610 INF: =================== Cycle #44, Imaging ===================
17-03-17 20:54:17.518 -07 000000610 INF: Imaging Cycle 44: ScanTilesCommand Cycle 44 time start.
17-03-17 20:54:17.518 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 20:54:17.518 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:54:17.548 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 20:54:17.548 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 20:54:17.548 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 20:54:17.848 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 20:54:17.868 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 20:54:17.868 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 20:54:17.918 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 20:54:17.938 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 20:54:17.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:17.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:17.938 -07 000000501 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 20:54:17.938 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:17.938 -07 000000501 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 20:54:17.938 -07 000000541 INF: FPGA: Recv EXLED1ON 
17-03-17 20:54:17.948 -07 000000501 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:54:17.948 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 20:54:17.948 -07 000000448 INF: FPGA: Recv EXLED1ADCR 23157
17-03-17 20:54:17.958 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:17.958 -07 000000501 INF: RedLED: Using Red data: Photodiode ADC 23157 --> 7.4 mW (old method), or 205.2 mW (new method). Difference = 197.8 mW
17-03-17 20:54:17.958 -07 000000501 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 20:54:17.958 -07 000000541 INF: FPGA: Recv EXLED1OFF 
17-03-17 20:54:17.968 -07 000000501 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:54:17.968 -07 000000501 INF: RedLED: LED was on for 19 ms
17-03-17 20:54:17.968 -07 000000501 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-17 20:54:17.968 -07 000000501 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 20:54:17.968 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:17.968 -07 000000501 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 20:54:17.968 -07 000000541 INF: FPGA: Recv EXLED2ON 
17-03-17 20:54:17.978 -07 000000501 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:54:17.998 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:54:17.998 -07 000000458 INF: FPGA: Recv EXLED1ADCR 2093
17-03-17 20:54:18.008 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:54:18.008 -07 000000501 INF: GreenLED: Using Green data: Photodiode ADC 2093 --> 0.9 mW (old method), or 181.9 mW (new method). Difference = 181.0 mW
17-03-17 20:54:18.008 -07 000000501 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 20:54:18.008 -07 000000458 INF: FPGA: Recv EXLED2OFF 
17-03-17 20:54:18.018 -07 000000501 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:18.018 -07 000000501 INF: GreenLED: LED was on for 39 ms
17-03-17 20:54:18.018 -07 000000501 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 48 ms.
17-03-17 20:54:18.028 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:54:18.028 -07 000000576 INF: FPGA: Recv EMCUR 
17-03-17 20:54:18.038 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:54:18.038 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 20:54:18.308 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.993549,
17-03-17 20:54:18.538 -07 000000462 INF: FPGA: Recv EMOUT
17-03-17 20:54:18.538 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 20:54:18.538 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 20:54:18.538 -07 000000608 INF: FPGA: Recv EMCUR 
17-03-17 20:54:18.548 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:54:18.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:54:18.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127576287519183. ------
17-03-17 20:54:18.548 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:18.548 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17948 mm
17-03-17 20:54:18.548 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:54:18.558 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:18.558 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:54:18.558 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:54:18.558 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:54:18.558 -07 000000415 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 20:54:18.558 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 39207, sync = True, waitForSettling = False)
17-03-17 20:54:18.558 -07 000000502 INF: Z Motor: Moving to -0.179478 mm, started at -0.127576 mm, distance = -51.90 um
17-03-17 20:54:18.568 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:18.568 -07 000000458 INF: FPGA: Recv YRDPOS 154380
17-03-17 20:54:18.578 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:54:18.578 -07 000000415 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:18.578 -07 000000415 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 20:54:18.578 -07 000000415 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:54:18.578 -07 000000502 INF: FPGA: Xmit ZDACW 39207\n [Z Motor]
17-03-17 20:54:18.578 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:54:18.588 -07 000000502 INF: FPGA: 'ZDACW 39207' command took 1 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:54:18.588 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:18.588 -07 000000576 INF: FPGA: Recv ZDACR 39207
17-03-17 20:54:18.598 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:18.598 -07 000000502 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 20:54:18.598 -07 000000415 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:54:18.758 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:54:18.758 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:54:20.278 -07 000000458 INF: FPGA: Recv YMVTO 122703 24775
17-03-17 20:54:20.278 -07 000000415 INF: FPGA: 'YMVTO 122701' command took 1 ms to send, 1676 ms to get response, and 1706 ms overall
17-03-17 20:54:20.278 -07 000000415 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:54:20.278 -07 000000415 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24775 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 20:54:20.278 -07 000000415 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.468 mm, average velocity = 9.067 mm/sec
17-03-17 20:54:21.828 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:54:21.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:54:23.128 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:23.128 -07 000000502 INF: FPGA: Recv YRDPOS 122697
17-03-17 20:54:23.138 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:54:23.138 -07 000000415 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:23.158 -07 000000415 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:54:23.158 -07 000000415 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 20:54:23.158 -07 000000415 INF: Y Motor: Moved to 59.9106 after 4602 ms
17-03-17 20:54:23.158 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179478 mm (DAC = 39207)
17-03-17 20:54:23.158 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:23.168 -07 000000415 INF: FPGA: Recv ZSGSRD 37232
17-03-17 20:54:23.168 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:54:23.168 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:23.168 -07 000000608 INF: FPGA: Recv ZSGSRD 37228
17-03-17 20:54:23.178 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:54:23.178 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:23.178 -07 000000608 INF: FPGA: Recv ZSGSRD 37226
17-03-17 20:54:23.188 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:23.188 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:23.188 -07 000000415 INF: FPGA: Recv ZSGSRD 37230
17-03-17 20:54:23.198 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:23.198 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:23.198 -07 000000608 INF: FPGA: Recv ZSGSRD 37227
17-03-17 20:54:23.208 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:23.208 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:23.208 -07 000000608 INF: FPGA: Recv ZSGSRD 37230
17-03-17 20:54:23.218 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:23.218 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:23.218 -07 000000415 INF: FPGA: Recv ZSGSRD 37228
17-03-17 20:54:23.228 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:23.228 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:23.228 -07 000000415 INF: FPGA: Recv ZSGSRD 37230
17-03-17 20:54:23.238 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:23.238 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:23.238 -07 000000608 INF: FPGA: Recv ZSGSRD 37227
17-03-17 20:54:23.248 -07 000000475 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:23.248 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:23.248 -07 000000608 INF: FPGA: Recv ZSGSRD 37226
17-03-17 20:54:23.258 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:23.258 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:23.258 -07 000000415 INF: FPGA: Recv ZPIEZORD 33724
17-03-17 20:54:23.268 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:23.268 -07 000000475 INF: Z Motor: Piezo is near 52.0 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.983 V. Piezo Error = -7.8 V.
17-03-17 20:54:23.268 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37228 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37228 (-178.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 37226 (-178.6 uncal um), Max = 37232 (-178.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 20:54:23.268 -07 000000475 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37228, posNoise = 4, negNoise = 2
17-03-17 20:54:23.268 -07 000000475 INF: Z Motor: After move to -0.179478, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:23.268 -07 000000475 INF: Z Motor: Settle wait time = 4605 ms, measure time = 103 ms (allowed 150 ms), total time = 4708 ms
17-03-17 20:54:23.268 -07 000000475 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:54:23.318 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4762 ms
17-03-17 20:54:23.318 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:54:23.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:23.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:23.318 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:23.318 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:23.318 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:54:23.318 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:23.328 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:54:23.328 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:54:23.348 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 20:54:23.348 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:54:23.348 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:54:23.348 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:54:23.358 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 20:54:23.358 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 36 ms.
17-03-17 20:54:23.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:54:23.408 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:54:23.608 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:54:23.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:54:23.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:54:23.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:54:23.648 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:54:23.648 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 20:54:23.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 286 ms overall
17-03-17 20:54:23.708 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.977204,
17-03-17 20:54:23.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 20:54:23.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:23.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:54:23.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 20:54:23.748 -07 000000459 INF: Image SNR check: start
17-03-17 20:54:23.748 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:23.748 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:23.758 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:54:23.758 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:54:23.758 -07 000000459 INF: Image SNR check: pass  [peak (Max-Min)=64.83]
17-03-17 20:54:23.758 -07 000000459 INF: Autofocus start
17-03-17 20:54:23.758 -07 000000459 INF: MeasureProfile start
17-03-17 20:54:23.768 -07 000000459 INF: MeasureProfile done
17-03-17 20:54:23.768 -07 000000459 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:54:23.768 -07 000000459 INF: Autofocus finished
17-03-17 20:54:23.958 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:54:23.958 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:54:23.958 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.179483921624612. ----------
17-03-17 20:54:23.958 -07 000000610 INF: Cycle	44	Tile	1	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:54:23.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37739, sync = True, waitForSettling = True)
17-03-17 20:54:23.968 -07 000000610 INF: Z Motor: Moving to -0.172758 mm, started at -0.179484 mm, distance = 6.73 um
17-03-17 20:54:23.968 -07 000000610 INF: FPGA: Xmit ZDACW 37739\n [Z Motor]
17-03-17 20:54:23.968 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:54:23.978 -07 000000610 INF: FPGA: 'ZDACW 37739' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:54:23.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:23.978 -07 000000608 INF: FPGA: Recv ZDACR 37739
17-03-17 20:54:23.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:23.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:54:24.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:24.138 -07 000000459 INF: FPGA: Recv ZSGSRD 36184
17-03-17 20:54:24.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:54:24.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:24.148 -07 000000458 INF: FPGA: Recv ZSGSRD 36187
17-03-17 20:54:24.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:24.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:24.158 -07 000000501 INF: FPGA: Recv ZSGSRD 36184
17-03-17 20:54:24.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:24.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:24.168 -07 000000608 INF: FPGA: Recv ZSGSRD 36179
17-03-17 20:54:24.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:24.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:24.178 -07 000000459 INF: FPGA: Recv ZSGSRD 36184
17-03-17 20:54:24.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:24.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:24.188 -07 000000608 INF: FPGA: Recv ZSGSRD 36181
17-03-17 20:54:24.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:24.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:24.198 -07 000000459 INF: FPGA: Recv ZSGSRD 36186
17-03-17 20:54:24.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:24.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:24.208 -07 000000608 INF: FPGA: Recv ZSGSRD 36181
17-03-17 20:54:24.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:24.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:24.218 -07 000000459 INF: FPGA: Recv ZSGSRD 36182
17-03-17 20:54:24.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:24.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:24.228 -07 000000458 INF: FPGA: Recv ZSGSRD 36183
17-03-17 20:54:24.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:24.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:24.238 -07 000000459 INF: FPGA: Recv ZPIEZORD 32345
17-03-17 20:54:24.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:24.248 -07 000000610 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.759 V. Piezo Error = -8.5 V.
17-03-17 20:54:24.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36183 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36184 (-171.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36179 (-171.9 uncal um), Max = 36187 (-171.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:54:24.248 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36183, posNoise = 4, negNoise = 4
17-03-17 20:54:24.248 -07 000000610 INF: Z Motor: After move to -0.172758, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:24.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:54:24.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:24.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:24.248 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:24.248 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:24.248 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:54:24.248 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:54:24.248 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:24.248 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:54:24.248 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 20:54:24.248 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:54:24.248 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 4 ms.
17-03-17 20:54:24.248 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:54:24.258 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:54:24.258 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:54:24.268 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:54:24.268 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:54:24.278 -07 000000502 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 20:54:24.278 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:54:24.278 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:54:24.278 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:54:24.288 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:54:24.288 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 41 ms.
17-03-17 20:54:24.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37916 150\n [Camera]
17-03-17 20:54:24.488 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:54:24.908 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:54:24.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:54:24.918 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:54:24.918 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:54:24.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:54:24.918 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:54:24.918 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:54:24.918 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 20:54:24.928 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:54:24.928 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:54:25.108 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37916 807
17-03-17 20:54:25.258 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:54:25.318 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:54:25.318 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:54:25.318 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:25.318 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:54:25.318 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 20:54:25.318 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:54:25.318 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:54:25.318 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:25.328 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:54:25.458 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:54:25.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:54:25.458 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 542 ms.
17-03-17 20:54:25.458 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:54:25.458 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:54:25.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:54:25.468 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:54:25.468 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:54:25.468 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 589594896, 0x0, 391868352) start.
17-03-17 20:54:25.468 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:54:25.468 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:54:25.648 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-17 20:54:25.648 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:54:25.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37916 150' command took 2 ms to send, 1347 ms to get response, and 1359 ms overall
17-03-17 20:54:25.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:54:25.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172770619936472. ------
17-03-17 20:54:25.658 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:25.658 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17913 mm
17-03-17 20:54:25.658 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:54:25.658 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 39130, sync = True, waitForSettling = False)
17-03-17 20:54:25.658 -07 000000415 INF: Z Motor: Moving to -0.179126 mm, started at -0.172771 mm, distance = -6.36 um
17-03-17 20:54:25.658 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:25.658 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:54:25.658 -07 000000576 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 20:54:25.668 -07 000000415 INF: FPGA: Xmit ZDACW 39130\n [Z Motor]
17-03-17 20:54:25.668 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:54:25.668 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 20:54:25.678 -07 000000415 INF: FPGA: 'ZDACW 39130' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:54:25.678 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:25.678 -07 000000462 INF: FPGA: Recv ZDACR 39130
17-03-17 20:54:25.688 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:25.688 -07 000000415 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 20:54:25.688 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:25.688 -07 000000475 INF: FPGA: Recv YRDPOS 122697
17-03-17 20:54:25.698 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:54:25.698 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 20:54:25.698 -07 000000576 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:25.698 -07 000000576 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:54:25.698 -07 000000576 INF: Y Motor: Moving 1331 steps2
17-03-17 20:54:25.708 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:54:25.868 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 589594896, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:54:25.868 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:54:25.868 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:25.868 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:54:25.868 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:54:25.868 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:25.878 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:54:25.878 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 20:54:25.878 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 20:54:25.888 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 20:54:25.898 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:54:25.898 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 230 ms overall
17-03-17 20:54:26.078 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 20:54:26.078 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:54:26.108 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:26.118 -07 000000541 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:54:26.118 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:54:26.118 -07 000000576 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:26.118 -07 000000576 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:54:26.118 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.832 mm, average velocity = 2.150 mm/sec
17-03-17 20:54:26.828 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:54:26.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:54:27.068 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:27.068 -07 000000458 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:54:27.078 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:27.078 -07 000000576 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:27.098 -07 000000576 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:54:27.098 -07 000000576 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:54:27.098 -07 000000576 INF: Y Motor: Moved to 60.7329 after 1435 ms (table move)
17-03-17 20:54:27.098 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179126 mm (DAC = 39130)
17-03-17 20:54:27.098 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:27.108 -07 000000415 INF: FPGA: Recv ZSGSRD 37179
17-03-17 20:54:27.108 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:54:27.108 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:27.108 -07 000000415 INF: FPGA: Recv ZSGSRD 37181
17-03-17 20:54:27.118 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:27.118 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:27.118 -07 000000415 INF: FPGA: Recv ZSGSRD 37174
17-03-17 20:54:27.128 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:27.128 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:27.128 -07 000000415 INF: FPGA: Recv ZSGSRD 37164
17-03-17 20:54:27.138 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:27.138 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:27.138 -07 000000475 INF: FPGA: Recv ZSGSRD 37174
17-03-17 20:54:27.148 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:27.148 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:27.148 -07 000000458 INF: FPGA: Recv ZSGSRD 37178
17-03-17 20:54:27.158 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:27.158 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:27.158 -07 000000475 INF: FPGA: Recv ZSGSRD 37167
17-03-17 20:54:27.168 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:27.168 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:27.168 -07 000000475 INF: FPGA: Recv ZSGSRD 37175
17-03-17 20:54:27.178 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:27.178 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:27.178 -07 000000608 INF: FPGA: Recv ZSGSRD 37170
17-03-17 20:54:27.188 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:27.188 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:27.188 -07 000000502 INF: FPGA: Recv ZSGSRD 37178
17-03-17 20:54:27.198 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:27.198 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:27.198 -07 000000502 INF: FPGA: Recv ZPIEZORD 33617
17-03-17 20:54:27.208 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:27.208 -07 000000448 INF: Z Motor: Piezo is near 51.8 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.971 V. Piezo Error = -7.9 V.
17-03-17 20:54:27.208 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.1 um, Read 10 ADC samples: Avg = 37174 (-178.2 uncal um), Error = 0.9 uncal um, Median = 37174 (-178.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 37164 (-178.2 uncal um), Max = 37181 (-178.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:54:27.208 -07 000000448 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37174, posNoise = 7, negNoise = 10
17-03-17 20:54:27.208 -07 000000448 INF: Z Motor: After move to -0.179126, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:27.208 -07 000000448 INF: Z Motor: Settle wait time = 1441 ms, measure time = 103 ms (allowed 150 ms), total time = 1544 ms
17-03-17 20:54:27.208 -07 000000448 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:54:27.258 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 20:54:27.258 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:54:27.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:27.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:27.258 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:27.258 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:54:27.258 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:27.258 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:27.258 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:54:27.258 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:54:27.268 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:54:27.268 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:54:27.278 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:54:27.278 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:54:27.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:54:27.328 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:54:27.528 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:54:27.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:54:27.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:54:27.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 20:54:27.568 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:54:27.568 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:54:27.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:54:27.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:54:27.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:27.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:54:27.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:54:27.668 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:27.668 -07 000000501 INF: Autofocus start
17-03-17 20:54:27.668 -07 000000501 INF: MeasureProfile start
17-03-17 20:54:27.668 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:27.678 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:54:27.678 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:54:27.678 -07 000000501 INF: MeasureProfile done
17-03-17 20:54:27.678 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:54:27.678 -07 000000501 INF: Autofocus finished
17-03-17 20:54:27.878 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:54:27.878 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:54:27.878 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.179137014168957. ----------
17-03-17 20:54:27.878 -07 000000610 INF: Cycle	44	Tile	2	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:54:27.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37645, sync = True, waitForSettling = True)
17-03-17 20:54:27.888 -07 000000610 INF: Z Motor: Moving to -0.172328 mm, started at -0.179137 mm, distance = 6.81 um
17-03-17 20:54:27.888 -07 000000610 INF: FPGA: Xmit ZDACW 37645\n [Z Motor]
17-03-17 20:54:27.888 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:54:27.898 -07 000000610 INF: FPGA: 'ZDACW 37645' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:54:27.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:27.898 -07 000000512 INF: FPGA: Recv ZDACR 37645
17-03-17 20:54:27.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:27.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:54:28.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:28.058 -07 000000608 INF: FPGA: Recv ZSGSRD 36114
17-03-17 20:54:28.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:54:28.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:28.068 -07 000000512 INF: FPGA: Recv ZSGSRD 36117
17-03-17 20:54:28.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:28.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:28.078 -07 000000448 INF: FPGA: Recv ZSGSRD 36122
17-03-17 20:54:28.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:28.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:28.088 -07 000000501 INF: FPGA: Recv ZSGSRD 36114
17-03-17 20:54:28.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:28.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:28.098 -07 000000448 INF: FPGA: Recv ZSGSRD 36111
17-03-17 20:54:28.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:28.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:28.108 -07 000000501 INF: FPGA: Recv ZSGSRD 36120
17-03-17 20:54:28.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:28.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:28.118 -07 000000608 INF: FPGA: Recv ZSGSRD 36114
17-03-17 20:54:28.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:28.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:28.128 -07 000000448 INF: FPGA: Recv ZSGSRD 36115
17-03-17 20:54:28.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:28.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:28.138 -07 000000608 INF: FPGA: Recv ZSGSRD 36111
17-03-17 20:54:28.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:28.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:28.148 -07 000000448 INF: FPGA: Recv ZSGSRD 36115
17-03-17 20:54:28.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:28.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:28.158 -07 000000608 INF: FPGA: Recv ZPIEZORD 32194
17-03-17 20:54:28.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:28.168 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.744 V. Piezo Error = -8.7 V.
17-03-17 20:54:28.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36115 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36114 (-171.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36111 (-171.4 uncal um), Max = 36122 (-171.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:54:28.168 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36115, posNoise = 7, negNoise = 4
17-03-17 20:54:28.168 -07 000000610 INF: Z Motor: After move to -0.172328, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:28.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:54:28.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:28.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:28.168 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:28.168 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:54:28.168 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:54:28.168 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:28.168 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:54:28.168 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:28.168 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:54:28.168 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:54:28.168 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:54:28.168 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:54:28.178 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:54:28.178 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:54:28.178 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:54:28.178 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:54:28.188 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:54:28.188 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:54:28.188 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:54:28.188 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:54:28.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37822 150\n [Camera]
17-03-17 20:54:28.388 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:54:28.818 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:54:28.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:54:28.818 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:54:28.818 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:54:28.818 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:54:28.818 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:54:28.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:54:28.818 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:54:28.818 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:54:28.818 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1052839984, 0x0, 418435064) start.
17-03-17 20:54:29.008 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37822 807
17-03-17 20:54:29.078 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.008536,
17-03-17 20:54:29.158 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:54:29.218 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:54:29.218 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:54:29.218 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:29.218 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:54:29.218 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:54:29.218 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1052839984, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:54:29.218 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:54:29.218 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:29.228 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:54:29.228 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:54:29.358 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:54:29.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:54:29.358 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:54:29.468 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:54:29.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:54:29.468 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:54:29.478 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:54:29.478 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:54:29.478 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:54:29.478 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:54:29.548 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-17 20:54:29.558 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:54:29.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37822 150' command took 2 ms to send, 1349 ms to get response, and 1360 ms overall
17-03-17 20:54:29.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:54:29.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.172333773510832. ------
17-03-17 20:54:29.558 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:29.558 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17872 mm
17-03-17 20:54:29.558 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:54:29.558 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:54:29.558 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 39041, sync = True, waitForSettling = False)
17-03-17 20:54:29.558 -07 000000502 INF: Z Motor: Moving to -0.178718 mm, started at -0.172334 mm, distance = -6.38 um
17-03-17 20:54:29.558 -07 000000462 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 20:54:29.558 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:29.568 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:54:29.568 -07 000000502 INF: FPGA: Xmit ZDACW 39041\n [Z Motor]
17-03-17 20:54:29.568 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:54:29.578 -07 000000502 INF: FPGA: 'ZDACW 39041' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:54:29.578 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:29.578 -07 000000576 INF: FPGA: Recv YRDPOS 124382
17-03-17 20:54:29.588 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:54:29.588 -07 000000462 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:29.588 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:54:29.588 -07 000000462 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:54:29.588 -07 000000462 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:54:29.598 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:29.598 -07 000000448 INF: FPGA: Recv ZDACR 39041
17-03-17 20:54:29.608 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:54:29.608 -07 000000502 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:54:29.608 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:54:29.788 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:54:29.788 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:54:29.868 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 20:54:29.868 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:54:29.868 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:29.868 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:54:29.868 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:54:29.868 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:29.868 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:54:29.868 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:54:29.868 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-17 20:54:29.878 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:54:29.978 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 20:54:29.978 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 20:54:30.018 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:30.018 -07 000000448 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:54:30.028 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:54:30.028 -07 000000462 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:30.028 -07 000000462 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:54:30.028 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.840 mm, average velocity = 2.148 mm/sec
17-03-17 20:54:30.978 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:30.978 -07 000000502 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:54:30.988 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:54:30.988 -07 000000462 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:31.008 -07 000000462 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:54:31.008 -07 000000462 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:54:31.008 -07 000000462 INF: Y Motor: Moved to 61.5640 after 1446 ms (table move)
17-03-17 20:54:31.008 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178718 mm (DAC = 39041)
17-03-17 20:54:31.008 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:31.018 -07 000000382 INF: FPGA: Recv ZSGSRD 37120
17-03-17 20:54:31.018 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:54:31.018 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:31.018 -07 000000462 INF: FPGA: Recv ZSGSRD 37105
17-03-17 20:54:31.028 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:31.028 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:31.028 -07 000000501 INF: FPGA: Recv ZSGSRD 37109
17-03-17 20:54:31.038 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:31.038 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:31.038 -07 000000462 INF: FPGA: Recv ZSGSRD 37111
17-03-17 20:54:31.048 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:31.048 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:31.048 -07 000000382 INF: FPGA: Recv ZSGSRD 37114
17-03-17 20:54:31.058 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:31.058 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:31.058 -07 000000462 INF: FPGA: Recv ZSGSRD 37113
17-03-17 20:54:31.068 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:31.068 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:31.068 -07 000000382 INF: FPGA: Recv ZSGSRD 37111
17-03-17 20:54:31.078 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:31.078 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:31.078 -07 000000462 INF: FPGA: Recv ZSGSRD 37107
17-03-17 20:54:31.088 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:31.088 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:31.088 -07 000000382 INF: FPGA: Recv ZSGSRD 37105
17-03-17 20:54:31.098 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:31.098 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:31.098 -07 000000462 INF: FPGA: Recv ZSGSRD 37109
17-03-17 20:54:31.108 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:31.108 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:31.108 -07 000000576 INF: FPGA: Recv ZPIEZORD 33542
17-03-17 20:54:31.118 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:31.118 -07 000000608 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.957 V. Piezo Error = -7.9 V.
17-03-17 20:54:31.118 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.7 um, Read 10 ADC samples: Avg = 37110 (-177.8 uncal um), Error = 0.9 uncal um, Median = 37110 (-177.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 37105 (-177.8 uncal um), Max = 37120 (-177.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:54:31.118 -07 000000608 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37110, posNoise = 10, negNoise = 5
17-03-17 20:54:31.118 -07 000000608 INF: Z Motor: After move to -0.178718, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:31.118 -07 000000608 INF: Z Motor: Settle wait time = 1449 ms, measure time = 103 ms (allowed 150 ms), total time = 1552 ms
17-03-17 20:54:31.118 -07 000000608 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:54:31.168 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 20:54:31.168 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:54:31.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:31.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:31.168 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:31.168 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:31.168 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:54:31.168 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:31.168 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:54:31.168 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:54:31.178 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:54:31.178 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:54:31.188 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:54:31.188 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:54:31.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:54:31.238 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:54:31.438 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:54:31.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:54:31.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:54:31.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 20:54:31.478 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:54:31.478 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 20:54:31.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 20:54:31.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:54:31.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:31.568 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:54:31.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:54:31.578 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:31.578 -07 000000501 INF: Autofocus start
17-03-17 20:54:31.578 -07 000000501 INF: MeasureProfile start
17-03-17 20:54:31.578 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:31.588 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:54:31.588 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:54:31.588 -07 000000501 INF: MeasureProfile done
17-03-17 20:54:31.588 -07 000000501 INF: X=-32  Z correction [um]=-0.2344
17-03-17 20:54:31.588 -07 000000501 INF: Autofocus finished
17-03-17 20:54:31.788 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:54:31.788 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:54:31.788 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178725864591884. ----------
17-03-17 20:54:31.788 -07 000000610 INF: Cycle	44	Tile	3	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:54:31.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37502, sync = True, waitForSettling = True)
17-03-17 20:54:31.798 -07 000000610 INF: Z Motor: Moving to -0.171673 mm, started at -0.178726 mm, distance = 7.05 um
17-03-17 20:54:31.798 -07 000000610 INF: FPGA: Xmit ZDACW 37502\n [Z Motor]
17-03-17 20:54:31.798 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:54:31.808 -07 000000610 INF: FPGA: 'ZDACW 37502' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:31.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:31.808 -07 000000462 INF: FPGA: Recv ZDACR 37502
17-03-17 20:54:31.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:31.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:54:31.828 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:54:31.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:54:31.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:31.968 -07 000000415 INF: FPGA: Recv ZSGSRD 36015
17-03-17 20:54:31.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:54:31.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:31.978 -07 000000458 INF: FPGA: Recv ZSGSRD 36015
17-03-17 20:54:31.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:31.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:31.988 -07 000000541 INF: FPGA: Recv ZSGSRD 36017
17-03-17 20:54:31.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:31.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:31.998 -07 000000512 INF: FPGA: Recv ZSGSRD 36014
17-03-17 20:54:32.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:32.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:32.008 -07 000000576 INF: FPGA: Recv ZSGSRD 36013
17-03-17 20:54:32.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:32.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:32.018 -07 000000502 INF: FPGA: Recv ZSGSRD 36018
17-03-17 20:54:32.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:32.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:32.028 -07 000000458 INF: FPGA: Recv ZSGSRD 36015
17-03-17 20:54:32.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:32.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:32.038 -07 000000415 INF: FPGA: Recv ZSGSRD 36017
17-03-17 20:54:32.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:32.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:32.048 -07 000000512 INF: FPGA: Recv ZSGSRD 36017
17-03-17 20:54:32.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:32.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:32.058 -07 000000501 INF: FPGA: Recv ZSGSRD 36008
17-03-17 20:54:32.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:32.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:32.068 -07 000000424 INF: FPGA: Recv ZPIEZORD 32103
17-03-17 20:54:32.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:32.078 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -8.6 V.
17-03-17 20:54:32.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36015 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36015 (-170.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36008 (-170.8 uncal um), Max = 36018 (-170.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:54:32.078 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36015, posNoise = 3, negNoise = 7
17-03-17 20:54:32.078 -07 000000610 INF: Z Motor: After move to -0.171673, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:32.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:54:32.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:32.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:32.078 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:32.078 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:32.078 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:54:32.078 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:54:32.078 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:54:32.078 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:32.078 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:54:32.078 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:54:32.078 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:54:32.078 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:54:32.078 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:54:32.078 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:54:32.088 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:54:32.088 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:54:32.088 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:54:32.088 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:54:32.098 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:54:32.098 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:54:32.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37679 150\n [Camera]
17-03-17 20:54:32.298 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 20:54:32.718 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:54:32.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:54:32.718 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:54:32.718 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:54:32.718 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:54:32.718 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:54:32.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:54:32.718 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:54:32.718 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:54:32.718 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1054806064, 0x0, 418435064) start.
17-03-17 20:54:32.908 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37679 807
17-03-17 20:54:33.058 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:54:33.108 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1054806064, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:54:33.108 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:54:33.108 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:33.108 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:54:33.108 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:54:33.108 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:33.108 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:54:33.118 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:54:33.118 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:54:33.118 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:54:33.268 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:54:33.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:54:33.268 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:54:33.378 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:54:33.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:54:33.378 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:54:33.388 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:54:33.388 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:54:33.388 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:54:33.388 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:54:33.458 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-17 20:54:33.458 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:54:33.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37679 150' command took 2 ms to send, 1353 ms to get response, and 1360 ms overall
17-03-17 20:54:33.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:54:33.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.171691352296656. ------
17-03-17 20:54:33.458 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:33.458 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17788 mm
17-03-17 20:54:33.458 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:54:33.468 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:33.468 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:54:33.468 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:54:33.468 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:54:33.468 -07 000000382 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 20:54:33.468 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38859, sync = True, waitForSettling = False)
17-03-17 20:54:33.468 -07 000000608 INF: Z Motor: Moving to -0.177885 mm, started at -0.171691 mm, distance = -6.19 um
17-03-17 20:54:33.478 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:33.478 -07 000000475 INF: FPGA: Recv YRDPOS 126083
17-03-17 20:54:33.488 -07 000000608 INF: FPGA: Xmit ZDACW 38859\n [Z Motor]
17-03-17 20:54:33.488 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:54:33.488 -07 000000382 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:33.488 -07 000000382 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:54:33.488 -07 000000382 INF: Y Motor: Moving 1342 steps-18
17-03-17 20:54:33.488 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:54:33.498 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:54:33.498 -07 000000608 INF: FPGA: 'ZDACW 38859' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:54:33.508 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:33.508 -07 000000541 INF: FPGA: Recv ZDACR 38859
17-03-17 20:54:33.518 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:54:33.518 -07 000000608 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 20:54:33.668 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:54:33.668 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 206 ms overall
17-03-17 20:54:33.768 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:54:33.768 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 20:54:33.768 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:33.778 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:54:33.778 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:54:33.778 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:54:33.778 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:33.778 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:54:33.778 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 20:54:33.778 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:54:33.868 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 20:54:33.878 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 389 ms overall
17-03-17 20:54:33.908 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:33.908 -07 000000459 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:54:33.918 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:54:33.918 -07 000000382 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:33.918 -07 000000382 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:54:33.918 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.839 mm, average velocity = 2.156 mm/sec
17-03-17 20:54:34.448 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.028963,
17-03-17 20:54:34.868 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:34.868 -07 000000501 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:54:34.878 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:54:34.878 -07 000000382 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:34.898 -07 000000382 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:54:34.898 -07 000000382 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:54:34.898 -07 000000382 INF: Y Motor: Moved to 62.3955 after 1429 ms (table move)
17-03-17 20:54:34.898 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177885 mm (DAC = 38859)
17-03-17 20:54:34.898 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:34.898 -07 000000501 INF: FPGA: Recv ZSGSRD 36988
17-03-17 20:54:34.908 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:54:34.908 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:34.908 -07 000000382 INF: FPGA: Recv ZSGSRD 36977
17-03-17 20:54:34.918 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:34.918 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:34.918 -07 000000459 INF: FPGA: Recv ZSGSRD 36983
17-03-17 20:54:34.928 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:34.928 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:34.928 -07 000000382 INF: FPGA: Recv ZSGSRD 36981
17-03-17 20:54:34.938 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:34.938 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:34.938 -07 000000608 INF: FPGA: Recv ZSGSRD 36982
17-03-17 20:54:34.948 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:34.948 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:34.948 -07 000000415 INF: FPGA: Recv ZSGSRD 36977
17-03-17 20:54:34.958 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:34.958 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:34.958 -07 000000608 INF: FPGA: Recv ZSGSRD 36977
17-03-17 20:54:34.968 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:34.968 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:34.968 -07 000000424 INF: FPGA: Recv ZSGSRD 36982
17-03-17 20:54:34.978 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:34.978 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:34.978 -07 000000541 INF: FPGA: Recv ZSGSRD 36986
17-03-17 20:54:34.988 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:34.988 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:34.988 -07 000000424 INF: FPGA: Recv ZSGSRD 36983
17-03-17 20:54:34.998 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:34.998 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:34.998 -07 000000382 INF: FPGA: Recv ZPIEZORD 33369
17-03-17 20:54:35.008 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:35.008 -07 000000512 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.930 V. Piezo Error = -8.0 V.
17-03-17 20:54:35.008 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36982 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36982 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36977 (-177.0 uncal um), Max = 36988 (-177.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:54:35.008 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36982, posNoise = 6, negNoise = 5
17-03-17 20:54:35.008 -07 000000512 INF: Z Motor: After move to -0.177885, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:35.008 -07 000000512 INF: Z Motor: Settle wait time = 1432 ms, measure time = 105 ms (allowed 150 ms), total time = 1537 ms
17-03-17 20:54:35.008 -07 000000512 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:54:35.058 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 20:54:35.058 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:54:35.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:35.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:35.058 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:35.058 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:35.058 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:54:35.058 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:35.068 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:54:35.068 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:54:35.068 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:54:35.068 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:54:35.078 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:54:35.078 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:54:35.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:54:35.118 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:54:35.318 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:54:35.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:54:35.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:54:35.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 20:54:35.358 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:54:35.358 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:54:35.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 20:54:35.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 20:54:35.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:35.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:54:35.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 20:54:35.458 -07 000000501 INF: Autofocus start
17-03-17 20:54:35.458 -07 000000501 INF: MeasureProfile start
17-03-17 20:54:35.458 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:35.458 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:35.468 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:54:35.468 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:54:35.468 -07 000000501 INF: MeasureProfile done
17-03-17 20:54:35.468 -07 000000501 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:54:35.468 -07 000000501 INF: Autofocus finished
17-03-17 20:54:35.668 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:54:35.668 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:54:35.668 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.177903565437739. ----------
17-03-17 20:54:35.668 -07 000000610 INF: Cycle	44	Tile	4	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:54:35.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37391, sync = True, waitForSettling = True)
17-03-17 20:54:35.678 -07 000000610 INF: Z Motor: Moving to -0.171165 mm, started at -0.177904 mm, distance = 6.74 um
17-03-17 20:54:35.678 -07 000000610 INF: FPGA: Xmit ZDACW 37391\n [Z Motor]
17-03-17 20:54:35.678 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:54:35.688 -07 000000610 INF: FPGA: 'ZDACW 37391' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:35.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:35.688 -07 000000459 INF: FPGA: Recv ZDACR 37391
17-03-17 20:54:35.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:35.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:54:35.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:35.848 -07 000000608 INF: FPGA: Recv ZSGSRD 35935
17-03-17 20:54:35.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:54:35.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:35.858 -07 000000382 INF: FPGA: Recv ZSGSRD 35936
17-03-17 20:54:35.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:35.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:35.868 -07 000000501 INF: FPGA: Recv ZSGSRD 35927
17-03-17 20:54:35.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:35.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:35.878 -07 000000382 INF: FPGA: Recv ZSGSRD 35937
17-03-17 20:54:35.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:35.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:35.888 -07 000000424 INF: FPGA: Recv ZSGSRD 35938
17-03-17 20:54:35.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:35.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:35.898 -07 000000608 INF: FPGA: Recv ZSGSRD 35932
17-03-17 20:54:35.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:35.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:35.908 -07 000000502 INF: FPGA: Recv ZSGSRD 35939
17-03-17 20:54:35.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:35.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:35.918 -07 000000502 INF: FPGA: Recv ZSGSRD 35936
17-03-17 20:54:35.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:35.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:35.928 -07 000000382 INF: FPGA: Recv ZSGSRD 35935
17-03-17 20:54:35.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:54:35.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:35.938 -07 000000541 INF: FPGA: Recv ZSGSRD 35934
17-03-17 20:54:35.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:35.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:35.948 -07 000000501 INF: FPGA: Recv ZPIEZORD 31971
17-03-17 20:54:35.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:35.958 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.706 V. Piezo Error = -8.8 V.
17-03-17 20:54:35.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35935 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35936 (-170.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35927 (-170.2 uncal um), Max = 35939 (-170.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:54:35.958 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35935, posNoise = 4, negNoise = 8
17-03-17 20:54:35.958 -07 000000610 INF: Z Motor: After move to -0.171165, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:35.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:54:35.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:35.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:35.958 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:35.958 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:35.958 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:54:35.958 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:54:35.958 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:35.958 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:54:35.958 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:54:35.958 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:54:35.958 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:54:35.958 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:54:35.968 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:54:35.968 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:54:35.968 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:54:35.968 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:54:35.968 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:54:35.968 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:54:35.968 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:54:35.968 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:54:35.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37568 150\n [Camera]
17-03-17 20:54:36.178 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:54:36.598 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 20:54:36.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 20:54:36.598 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:54:36.598 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:54:36.598 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:54:36.608 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 20:54:36.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 20:54:36.608 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:54:36.608 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:54:36.608 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1054806064, 0x0, 418435064) start.
17-03-17 20:54:36.788 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37568 807
17-03-17 20:54:36.828 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:54:36.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:54:36.938 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:54:36.988 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1054806064, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 20:54:36.988 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:54:36.988 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:36.998 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:54:36.998 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:54:36.998 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:36.998 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:54:36.998 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:54:36.998 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:54:37.008 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:54:37.148 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:54:37.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:54:37.148 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:54:37.258 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:54:37.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:54:37.258 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:54:37.258 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:54:37.258 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:54:37.258 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:54:37.258 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:54:37.338 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-17 20:54:37.338 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:54:37.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37568 150' command took 2 ms to send, 1352 ms to get response, and 1359 ms overall
17-03-17 20:54:37.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:54:37.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.171177415325315. ------
17-03-17 20:54:37.338 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:37.338 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17771 mm
17-03-17 20:54:37.338 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:54:37.348 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:54:37.348 -07 000000541 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 20:54:37.348 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:37.348 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:37.348 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:54:37.348 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38821, sync = True, waitForSettling = False)
17-03-17 20:54:37.348 -07 000000502 INF: Z Motor: Moving to -0.177711 mm, started at -0.171177 mm, distance = -6.53 um
17-03-17 20:54:37.348 -07 000000459 INF: FPGA: Recv YRDPOS 127786
17-03-17 20:54:37.358 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:37.358 -07 000000541 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:37.358 -07 000000541 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:54:37.358 -07 000000541 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:54:37.358 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:54:37.368 -07 000000502 INF: FPGA: Xmit ZDACW 38821\n [Z Motor]
17-03-17 20:54:37.368 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:54:37.378 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:54:37.378 -07 000000502 INF: FPGA: 'ZDACW 38821' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:54:37.388 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:37.388 -07 000000459 INF: FPGA: Recv ZDACR 38821
17-03-17 20:54:37.398 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:54:37.398 -07 000000502 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 20:54:37.558 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:54:37.558 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:54:37.658 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 20:54:37.658 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:54:37.658 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:37.658 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:54:37.658 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:54:37.658 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:37.658 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:54:37.658 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:54:37.658 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 20:54:37.668 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:54:37.748 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 20:54:37.748 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:54:37.788 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:37.788 -07 000000462 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:54:37.798 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:54:37.798 -07 000000541 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:37.798 -07 000000541 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:54:37.798 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec
17-03-17 20:54:38.748 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:38.748 -07 000000608 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:54:38.758 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:54:38.758 -07 000000541 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:38.778 -07 000000541 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:54:38.778 -07 000000541 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:54:38.778 -07 000000541 INF: Y Motor: Moved to 63.2246 after 1432 ms (table move)
17-03-17 20:54:38.778 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177711 mm (DAC = 38821)
17-03-17 20:54:38.778 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:38.778 -07 000000541 INF: FPGA: Recv ZSGSRD 36963
17-03-17 20:54:38.788 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:54:38.788 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:38.788 -07 000000458 INF: FPGA: Recv ZSGSRD 36950
17-03-17 20:54:38.798 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:38.798 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:38.798 -07 000000458 INF: FPGA: Recv ZSGSRD 36953
17-03-17 20:54:38.808 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:38.808 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:38.808 -07 000000458 INF: FPGA: Recv ZSGSRD 36953
17-03-17 20:54:38.818 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:38.818 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:38.818 -07 000000458 INF: FPGA: Recv ZSGSRD 36957
17-03-17 20:54:38.828 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:38.828 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:38.828 -07 000000458 INF: FPGA: Recv ZSGSRD 36956
17-03-17 20:54:38.838 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:38.838 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:38.838 -07 000000462 INF: FPGA: Recv ZSGSRD 36951
17-03-17 20:54:38.848 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:38.848 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:38.848 -07 000000462 INF: FPGA: Recv ZSGSRD 36950
17-03-17 20:54:38.858 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:38.858 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:38.858 -07 000000462 INF: FPGA: Recv ZSGSRD 36954
17-03-17 20:54:38.868 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:38.868 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:38.868 -07 000000462 INF: FPGA: Recv ZSGSRD 36947
17-03-17 20:54:38.878 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:38.878 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:38.878 -07 000000458 INF: FPGA: Recv ZPIEZORD 33354
17-03-17 20:54:38.888 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:38.888 -07 000000382 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.924 V. Piezo Error = -8.0 V.
17-03-17 20:54:38.888 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36953 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36953 (-176.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36947 (-176.8 uncal um), Max = 36963 (-176.9 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:54:38.888 -07 000000382 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36953, posNoise = 10, negNoise = 6
17-03-17 20:54:38.888 -07 000000382 INF: Z Motor: After move to -0.177711, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:38.888 -07 000000382 INF: Z Motor: Settle wait time = 1435 ms, measure time = 104 ms (allowed 150 ms), total time = 1539 ms
17-03-17 20:54:38.888 -07 000000382 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:54:38.938 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 20:54:38.938 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:54:38.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:38.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:38.938 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:38.938 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:54:38.938 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:38.938 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:38.938 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:54:38.938 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:54:38.948 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:54:38.948 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:54:38.958 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:54:38.958 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:54:38.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:54:39.008 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:54:39.208 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:54:39.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:54:39.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:54:39.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 20:54:39.238 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:54:39.248 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 20:54:39.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 20:54:39.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 20:54:39.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:39.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:54:39.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 20:54:39.348 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:39.348 -07 000000576 INF: Autofocus start
17-03-17 20:54:39.348 -07 000000576 INF: MeasureProfile start
17-03-17 20:54:39.348 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:39.358 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:54:39.358 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:54:39.358 -07 000000576 INF: MeasureProfile done
17-03-17 20:54:39.358 -07 000000576 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:54:39.358 -07 000000576 INF: Autofocus finished
17-03-17 20:54:39.558 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:54:39.558 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:54:39.558 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.177717263285628. ----------
17-03-17 20:54:39.558 -07 000000610 INF: Cycle	44	Tile	5	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:54:39.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37336, sync = True, waitForSettling = True)
17-03-17 20:54:39.568 -07 000000610 INF: Z Motor: Moving to -0.170913 mm, started at -0.177717 mm, distance = 6.80 um
17-03-17 20:54:39.568 -07 000000610 INF: FPGA: Xmit ZDACW 37336\n [Z Motor]
17-03-17 20:54:39.568 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 20:54:39.578 -07 000000610 INF: FPGA: 'ZDACW 37336' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:39.578 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:39.578 -07 000000576 INF: FPGA: Recv ZDACR 37336
17-03-17 20:54:39.588 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:39.588 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:54:39.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:39.738 -07 000000512 INF: FPGA: Recv ZSGSRD 35896
17-03-17 20:54:39.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:54:39.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:39.748 -07 000000541 INF: FPGA: Recv ZSGSRD 35895
17-03-17 20:54:39.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:39.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:39.758 -07 000000512 INF: FPGA: Recv ZSGSRD 35896
17-03-17 20:54:39.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:39.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:39.768 -07 000000576 INF: FPGA: Recv ZSGSRD 35893
17-03-17 20:54:39.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:39.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:39.778 -07 000000608 INF: FPGA: Recv ZSGSRD 35896
17-03-17 20:54:39.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:39.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:39.788 -07 000000512 INF: FPGA: Recv ZSGSRD 35896
17-03-17 20:54:39.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:54:39.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:39.798 -07 000000576 INF: FPGA: Recv ZSGSRD 35893
17-03-17 20:54:39.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:39.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:39.818 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.012614,
17-03-17 20:54:39.818 -07 000000576 INF: FPGA: Recv ZSGSRD 35897
17-03-17 20:54:39.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:54:39.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:39.828 -07 000000541 INF: FPGA: Recv ZSGSRD 35892
17-03-17 20:54:39.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:39.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:39.858 -07 000000424 INF: FPGA: Recv ZSGSRD 35896
17-03-17 20:54:39.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:54:39.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:39.868 -07 000000501 INF: FPGA: Recv ZPIEZORD 31942
17-03-17 20:54:39.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:39.878 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.697 V. Piezo Error = -8.7 V.
17-03-17 20:54:39.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35895 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35896 (-170.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35892 (-170.0 uncal um), Max = 35897 (-170.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:54:39.878 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35895, posNoise = 2, negNoise = 3
17-03-17 20:54:39.878 -07 000000610 INF: Z Motor: After move to -0.170913, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:39.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 311 ms)
17-03-17 20:54:39.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:39.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:39.878 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:39.878 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:39.878 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:54:39.878 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:54:39.878 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:54:39.878 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:39.878 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:54:39.878 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:54:39.878 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:54:39.878 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:54:39.878 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:54:39.878 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:54:39.888 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:54:39.888 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:54:39.888 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:54:39.888 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:54:39.888 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:54:39.888 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:54:39.898 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37512 150\n [Camera]
17-03-17 20:54:40.098 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:54:40.518 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:54:40.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:54:40.518 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:54:40.518 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:54:40.518 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:54:40.518 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:54:40.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:54:40.518 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:54:40.518 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:54:40.528 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1054806064, 0x0, 418435064) start.
17-03-17 20:54:40.708 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37512 807
17-03-17 20:54:40.858 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:54:40.898 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:54:40.898 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:54:40.898 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:40.898 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1054806064, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:54:40.908 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:54:40.908 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:40.908 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:54:40.908 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:54:40.908 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:54:40.918 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:54:41.068 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:54:41.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:54:41.068 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:54:41.178 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:54:41.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:54:41.178 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:54:41.188 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:54:41.188 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:54:41.188 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:54:41.188 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:54:41.258 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-17 20:54:41.258 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:54:41.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37512 150' command took 2 ms to send, 1353 ms to get response, and 1361 ms overall
17-03-17 20:54:41.258 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:54:41.258 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.224609375, Z-Position -0.170920446839645. ------
17-03-17 20:54:41.258 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17748 mm
17-03-17 20:54:41.258 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:54:41.258 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:41.268 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:54:41.268 -07 000000462 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 20:54:41.268 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38769, sync = True, waitForSettling = False)
17-03-17 20:54:41.268 -07 000000608 INF: Z Motor: Moving to -0.177473 mm, started at -0.170920 mm, distance = -6.55 um
17-03-17 20:54:41.268 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:41.278 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:54:41.278 -07 000000608 INF: FPGA: Xmit ZDACW 38769\n [Z Motor]
17-03-17 20:54:41.278 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:54:41.288 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:41.288 -07 000000608 INF: FPGA: 'ZDACW 38769' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:54:41.288 -07 000000512 INF: FPGA: Recv YRDPOS 129484
17-03-17 20:54:41.298 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:54:41.298 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:54:41.298 -07 000000462 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:41.298 -07 000000462 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:54:41.298 -07 000000462 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:54:41.308 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:41.308 -07 000000512 INF: FPGA: Recv ZDACR 38769
17-03-17 20:54:41.318 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:54:41.318 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:54:41.318 -07 000000608 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 20:54:41.498 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:54:41.498 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:54:41.558 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:54:41.558 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:54:41.558 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:41.558 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:54:41.558 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:54:41.558 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:41.568 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:54:41.568 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:54:41.568 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 500 ms.
17-03-17 20:54:41.568 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:54:41.688 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 20:54:41.688 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:54:41.728 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:41.728 -07 000000458 INF: FPGA: Recv YRDPOS 131188
17-03-17 20:54:41.738 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:54:41.738 -07 000000462 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:41.738 -07 000000462 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 20:54:41.738 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 20:54:41.828 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:54:41.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:54:42.688 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:42.688 -07 000000458 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:54:42.698 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:54:42.698 -07 000000462 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:42.718 -07 000000462 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:54:42.718 -07 000000462 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:54:42.718 -07 000000462 INF: Y Motor: Moved to 64.0571 after 1447 ms (table move)
17-03-17 20:54:42.718 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177473 mm (DAC = 38769)
17-03-17 20:54:42.718 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:42.718 -07 000000459 INF: FPGA: Recv ZSGSRD 36920
17-03-17 20:54:42.728 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:54:42.728 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:42.728 -07 000000462 INF: FPGA: Recv ZSGSRD 36906
17-03-17 20:54:42.738 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:42.738 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:42.738 -07 000000541 INF: FPGA: Recv ZSGSRD 36922
17-03-17 20:54:42.748 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:42.748 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:42.748 -07 000000462 INF: FPGA: Recv ZSGSRD 36919
17-03-17 20:54:42.758 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:42.758 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:42.758 -07 000000459 INF: FPGA: Recv ZSGSRD 36916
17-03-17 20:54:42.768 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:42.768 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:42.768 -07 000000462 INF: FPGA: Recv ZSGSRD 36913
17-03-17 20:54:42.778 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:42.778 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:42.778 -07 000000502 INF: FPGA: Recv ZSGSRD 36913
17-03-17 20:54:42.788 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:42.788 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:42.788 -07 000000462 INF: FPGA: Recv ZSGSRD 36914
17-03-17 20:54:42.798 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:42.798 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:42.798 -07 000000459 INF: FPGA: Recv ZSGSRD 36910
17-03-17 20:54:42.808 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:42.808 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:42.808 -07 000000458 INF: FPGA: Recv ZSGSRD 36913
17-03-17 20:54:42.818 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:42.818 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:42.818 -07 000000459 INF: FPGA: Recv ZPIEZORD 33318
17-03-17 20:54:42.828 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:42.828 -07 000000576 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.916 V. Piezo Error = -8.0 V.
17-03-17 20:54:42.828 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36915 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36914 (-176.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36906 (-176.5 uncal um), Max = 36922 (-176.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:54:42.828 -07 000000576 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36915, posNoise = 7, negNoise = 9
17-03-17 20:54:42.828 -07 000000576 INF: Z Motor: After move to -0.177473, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:42.828 -07 000000576 INF: Z Motor: Settle wait time = 1450 ms, measure time = 107 ms (allowed 150 ms), total time = 1557 ms
17-03-17 20:54:42.828 -07 000000576 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 20:54:42.878 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 20:54:42.878 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:54:42.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:42.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:42.878 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:54:42.878 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:42.878 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:42.878 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:42.878 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:54:42.878 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:54:42.888 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:54:42.888 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:54:42.898 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:54:42.898 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:54:42.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:54:42.948 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:54:43.148 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:54:43.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:54:43.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:54:43.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 20:54:43.188 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:54:43.188 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 20:54:43.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 286 ms overall
17-03-17 20:54:43.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:54:43.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:43.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:54:43.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:54:43.288 -07 000000462 INF: Autofocus start
17-03-17 20:54:43.288 -07 000000462 INF: MeasureProfile start
17-03-17 20:54:43.288 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:43.288 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:43.298 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:54:43.298 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:54:43.298 -07 000000462 INF: MeasureProfile done
17-03-17 20:54:43.298 -07 000000462 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 20:54:43.298 -07 000000462 INF: Autofocus finished
17-03-17 20:54:43.498 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:54:43.498 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:54:43.498 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.177473143224241. ----------
17-03-17 20:54:43.498 -07 000000610 INF: Cycle	44	Tile	6	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:54:43.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37249, sync = True, waitForSettling = True)
17-03-17 20:54:43.508 -07 000000610 INF: Z Motor: Moving to -0.170515 mm, started at -0.177473 mm, distance = 6.96 um
17-03-17 20:54:43.508 -07 000000610 INF: FPGA: Xmit ZDACW 37249\n [Z Motor]
17-03-17 20:54:43.508 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 20:54:43.518 -07 000000610 INF: FPGA: 'ZDACW 37249' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:54:43.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:43.518 -07 000000576 INF: FPGA: Recv ZDACR 37249
17-03-17 20:54:43.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:43.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:54:43.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:43.678 -07 000000459 INF: FPGA: Recv ZSGSRD 35835
17-03-17 20:54:43.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:43.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:43.688 -07 000000576 INF: FPGA: Recv ZSGSRD 35831
17-03-17 20:54:43.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:43.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:43.698 -07 000000502 INF: FPGA: Recv ZSGSRD 35834
17-03-17 20:54:43.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:43.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:43.708 -07 000000608 INF: FPGA: Recv ZSGSRD 35827
17-03-17 20:54:43.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:43.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:43.718 -07 000000459 INF: FPGA: Recv ZSGSRD 35839
17-03-17 20:54:43.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:43.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:43.728 -07 000000608 INF: FPGA: Recv ZSGSRD 35835
17-03-17 20:54:43.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:43.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:43.738 -07 000000415 INF: FPGA: Recv ZSGSRD 35830
17-03-17 20:54:43.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:43.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:43.748 -07 000000462 INF: FPGA: Recv ZSGSRD 35833
17-03-17 20:54:43.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:43.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:43.758 -07 000000458 INF: FPGA: Recv ZSGSRD 35833
17-03-17 20:54:43.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:43.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:43.768 -07 000000502 INF: FPGA: Recv ZSGSRD 35836
17-03-17 20:54:43.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:43.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:43.778 -07 000000475 INF: FPGA: Recv ZPIEZORD 31865
17-03-17 20:54:43.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:43.788 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.684 V. Piezo Error = -8.8 V.
17-03-17 20:54:43.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35833 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35834 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35827 (-169.6 uncal um), Max = 35839 (-169.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:54:43.788 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35833, posNoise = 6, negNoise = 6
17-03-17 20:54:43.788 -07 000000610 INF: Z Motor: After move to -0.170515, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:43.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:54:43.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:43.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:43.788 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:43.788 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:54:43.788 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:54:43.788 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:54:43.788 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:43.788 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:43.788 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:54:43.788 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:54:43.788 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:54:43.788 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:54:43.798 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:54:43.798 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:54:43.798 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:54:43.798 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:54:43.808 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:54:43.808 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:54:43.808 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 20:54:43.808 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:54:43.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37426 150\n [Camera]
17-03-17 20:54:44.008 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:54:44.428 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:54:44.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:54:44.428 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:54:44.428 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:54:44.428 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:54:44.428 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:54:44.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:54:44.438 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:54:44.438 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:54:44.438 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1054806064, 0x0, 418435064) start.
17-03-17 20:54:44.618 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37426 807
17-03-17 20:54:44.778 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:54:44.808 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:54:44.808 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:54:44.808 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:44.808 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1054806064, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:54:44.808 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:54:44.808 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:44.808 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:54:44.808 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:54:44.818 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:54:44.818 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:54:44.978 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1161
17-03-17 20:54:44.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1161
17-03-17 20:54:44.978 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:54:44.978 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1161
17-03-17 20:54:44.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1161
17-03-17 20:54:44.978 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:54:44.988 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:54:44.988 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:54:44.988 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:54:44.988 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:54:45.168 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-17 20:54:45.168 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:54:45.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37426 150' command took 2 ms to send, 1355 ms to get response, and 1360 ms overall
17-03-17 20:54:45.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:54:45.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.170522145686855. ------
17-03-17 20:54:45.178 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:45.178 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17693 mm
17-03-17 20:54:45.178 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:54:45.178 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:54:45.178 -07 000000382 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 20:54:45.178 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:45.178 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38651, sync = True, waitForSettling = False)
17-03-17 20:54:45.178 -07 000000475 INF: Z Motor: Moving to -0.176933 mm, started at -0.170522 mm, distance = -6.41 um
17-03-17 20:54:45.188 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:54:45.188 -07 000000475 INF: FPGA: Xmit ZDACW 38651\n [Z Motor]
17-03-17 20:54:45.188 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:54:45.198 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:45.198 -07 000000475 INF: FPGA: 'ZDACW 38651' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:54:45.198 -07 000000459 INF: FPGA: Recv YRDPOS 131189
17-03-17 20:54:45.208 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:54:45.208 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:54:45.208 -07 000000382 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:45.208 -07 000000382 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:54:45.208 -07 000000382 INF: Y Motor: Moving 1337 steps-12
17-03-17 20:54:45.218 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:45.218 -07 000000462 INF: FPGA: Recv ZDACR 38651
17-03-17 20:54:45.228 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:54:45.228 -07 000000475 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:54:45.238 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:54:45.238 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.011254,
17-03-17 20:54:45.378 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 20:54:45.378 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:54:45.378 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:45.378 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:54:45.378 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:54:45.378 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:45.378 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:54:45.378 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:54:45.378 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:54:45.388 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 20:54:45.408 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:54:45.408 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:54:45.608 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 20:54:45.608 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-17 20:54:45.648 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:45.648 -07 000000576 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:54:45.658 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:54:45.658 -07 000000382 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:45.658 -07 000000382 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:54:45.658 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.835 mm, average velocity = 2.053 mm/sec
17-03-17 20:54:46.608 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:46.608 -07 000000502 INF: FPGA: Recv YRDPOS 132872
17-03-17 20:54:46.618 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:54:46.618 -07 000000382 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:46.638 -07 000000382 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:54:46.638 -07 000000382 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:54:46.638 -07 000000382 INF: Y Motor: Moved to 64.8789 after 1456 ms (table move)
17-03-17 20:54:46.638 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176933 mm (DAC = 38651)
17-03-17 20:54:46.638 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:46.638 -07 000000458 INF: FPGA: Recv ZSGSRD 36835
17-03-17 20:54:46.648 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:54:46.648 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:46.648 -07 000000576 INF: FPGA: Recv ZSGSRD 36829
17-03-17 20:54:46.658 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:46.658 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:46.658 -07 000000458 INF: FPGA: Recv ZSGSRD 36833
17-03-17 20:54:46.668 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:46.668 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:46.668 -07 000000608 INF: FPGA: Recv ZSGSRD 36834
17-03-17 20:54:46.678 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:46.678 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:46.678 -07 000000502 INF: FPGA: Recv ZSGSRD 36831
17-03-17 20:54:46.688 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:54:46.688 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:46.688 -07 000000608 INF: FPGA: Recv ZSGSRD 36839
17-03-17 20:54:46.698 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:46.698 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:46.698 -07 000000502 INF: FPGA: Recv ZSGSRD 36834
17-03-17 20:54:46.708 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:46.708 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:46.708 -07 000000382 INF: FPGA: Recv ZSGSRD 36834
17-03-17 20:54:46.718 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:46.718 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:46.718 -07 000000502 INF: FPGA: Recv ZSGSRD 36820
17-03-17 20:54:46.728 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:46.728 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:46.728 -07 000000608 INF: FPGA: Recv ZSGSRD 36825
17-03-17 20:54:46.738 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:46.738 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:46.738 -07 000000576 INF: FPGA: Recv ZPIEZORD 33219
17-03-17 20:54:46.748 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:46.748 -07 000000415 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.898 V. Piezo Error = -8.0 V.
17-03-17 20:54:46.748 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36831 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36834 (-176.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36820 (-176.0 uncal um), Max = 36839 (-176.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 20:54:46.748 -07 000000415 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36831, posNoise = 8, negNoise = 11
17-03-17 20:54:46.748 -07 000000415 INF: Z Motor: After move to -0.176933, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:46.748 -07 000000415 INF: Z Motor: Settle wait time = 1458 ms, measure time = 105 ms (allowed 150 ms), total time = 1563 ms
17-03-17 20:54:46.748 -07 000000415 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:54:46.798 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-17 20:54:46.798 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:54:46.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:46.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:46.798 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:46.798 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:46.798 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:54:46.798 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:46.798 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:54:46.798 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:54:46.808 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:54:46.808 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:54:46.818 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:54:46.818 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:54:46.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:54:46.828 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:54:46.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:54:46.868 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:54:47.068 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:54:47.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:54:47.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:54:47.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 20:54:47.108 -07 000000415 INF: FPGA: Recv @CAMSNAP 281
17-03-17 20:54:47.108 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 20:54:47.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 286 ms overall
17-03-17 20:54:47.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:54:47.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:47.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:54:47.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:54:47.208 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:47.208 -07 000000576 INF: Autofocus start
17-03-17 20:54:47.208 -07 000000576 INF: MeasureProfile start
17-03-17 20:54:47.208 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:47.218 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:54:47.218 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:54:47.228 -07 000000576 INF: MeasureProfile done
17-03-17 20:54:47.228 -07 000000576 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:54:47.228 -07 000000576 INF: Autofocus finished
17-03-17 20:54:47.418 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:54:47.418 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:54:47.418 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.176933509404333. ----------
17-03-17 20:54:47.418 -07 000000610 INF: Cycle	44	Tile	7	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:54:47.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37183, sync = True, waitForSettling = True)
17-03-17 20:54:47.428 -07 000000610 INF: Z Motor: Moving to -0.170213 mm, started at -0.176934 mm, distance = 6.72 um
17-03-17 20:54:47.428 -07 000000610 INF: FPGA: Xmit ZDACW 37183\n [Z Motor]
17-03-17 20:54:47.428 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:54:47.438 -07 000000610 INF: FPGA: 'ZDACW 37183' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:54:47.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:47.438 -07 000000382 INF: FPGA: Recv ZDACR 37183
17-03-17 20:54:47.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:47.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:54:47.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:47.598 -07 000000502 INF: FPGA: Recv ZSGSRD 35787
17-03-17 20:54:47.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:54:47.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:47.608 -07 000000608 INF: FPGA: Recv ZSGSRD 35786
17-03-17 20:54:47.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:47.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:47.618 -07 000000502 INF: FPGA: Recv ZSGSRD 35790
17-03-17 20:54:47.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:47.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:47.628 -07 000000501 INF: FPGA: Recv ZSGSRD 35781
17-03-17 20:54:47.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:47.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:47.638 -07 000000576 INF: FPGA: Recv ZSGSRD 35788
17-03-17 20:54:47.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:47.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:47.648 -07 000000458 INF: FPGA: Recv ZSGSRD 35786
17-03-17 20:54:47.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:47.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:47.658 -07 000000415 INF: FPGA: Recv ZSGSRD 35788
17-03-17 20:54:47.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:47.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:47.668 -07 000000458 INF: FPGA: Recv ZSGSRD 35787
17-03-17 20:54:47.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:47.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:47.678 -07 000000415 INF: FPGA: Recv ZSGSRD 35783
17-03-17 20:54:47.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:47.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:47.688 -07 000000608 INF: FPGA: Recv ZSGSRD 35791
17-03-17 20:54:47.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:47.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:47.698 -07 000000576 INF: FPGA: Recv ZPIEZORD 31812
17-03-17 20:54:47.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:47.708 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.674 V. Piezo Error = -8.8 V.
17-03-17 20:54:47.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35787 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35787 (-169.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35781 (-169.3 uncal um), Max = 35791 (-169.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:54:47.708 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35787, posNoise = 4, negNoise = 6
17-03-17 20:54:47.708 -07 000000610 INF: Z Motor: After move to -0.170213, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:47.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:54:47.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:47.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:47.708 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:47.708 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:47.708 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:54:47.708 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:47.708 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:54:47.708 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:54:47.708 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:54:47.708 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:54:47.718 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 20:54:47.718 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:54:47.718 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:54:47.718 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:54:47.718 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:54:47.718 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:54:47.728 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:54:47.728 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:54:47.728 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:54:47.728 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:54:47.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37360 150\n [Camera]
17-03-17 20:54:47.928 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:54:48.348 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:54:48.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:54:48.348 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:54:48.348 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:54:48.348 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1090228328, 0x0, 391868352) start.
17-03-17 20:54:48.358 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:54:48.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:54:48.358 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:54:48.358 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:54:48.358 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1125650592, 0x0, 418435064) start.
17-03-17 20:54:48.538 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37360 807
17-03-17 20:54:48.688 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:54:48.728 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1125650592, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 20:54:48.728 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 20:54:48.728 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:48.728 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:54:48.728 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1090228328, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:54:48.728 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:54:48.728 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:48.728 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:54:48.738 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:54:48.738 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:54:48.898 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:54:48.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:54:48.898 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:54:48.898 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:54:48.898 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:54:48.898 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:54:48.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:54:48.898 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:54:48.898 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:54:48.898 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:54:49.088 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-17 20:54:49.088 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:54:49.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37360 150' command took 2 ms to send, 1355 ms to get response, and 1360 ms overall
17-03-17 20:54:49.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:54:49.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.170226631928334. ------
17-03-17 20:54:49.098 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:49.098 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17692 mm
17-03-17 20:54:49.098 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:54:49.098 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:49.098 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:54:49.098 -07 000000448 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 20:54:49.098 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38649, sync = True, waitForSettling = False)
17-03-17 20:54:49.098 -07 000000502 INF: Z Motor: Moving to -0.176924 mm, started at -0.170227 mm, distance = -6.70 um
17-03-17 20:54:49.108 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:49.108 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:49.108 -07 000000501 INF: FPGA: Recv YRDPOS 132873
17-03-17 20:54:49.118 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:54:49.118 -07 000000448 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:49.118 -07 000000502 INF: FPGA: Xmit ZDACW 38649\n [Z Motor]
17-03-17 20:54:49.118 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:54:49.118 -07 000000448 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:54:49.118 -07 000000448 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:54:49.128 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:54:49.128 -07 000000502 INF: FPGA: 'ZDACW 38649' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:54:49.138 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:54:49.148 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:49.148 -07 000000475 INF: FPGA: Recv ZDACR 38649
17-03-17 20:54:49.158 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:54:49.158 -07 000000502 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 20:54:49.298 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 20:54:49.298 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:54:49.298 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:49.298 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:54:49.298 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:54:49.298 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:49.308 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:54:49.308 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:54:49.308 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 20:54:49.308 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:54:49.328 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:54:49.328 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:54:49.508 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:54:49.508 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 20:54:49.548 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:49.548 -07 000000502 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:54:49.558 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:54:49.558 -07 000000448 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:49.558 -07 000000448 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 20:54:49.558 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.158 mm/sec
17-03-17 20:54:50.508 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:50.508 -07 000000502 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:54:50.518 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:54:50.518 -07 000000448 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:50.538 -07 000000448 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:54:50.538 -07 000000448 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:54:50.538 -07 000000448 INF: Y Motor: Moved to 65.7144 after 1442 ms (table move)
17-03-17 20:54:50.538 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176924 mm (DAC = 38649)
17-03-17 20:54:50.538 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:50.548 -07 000000576 INF: FPGA: Recv ZSGSRD 36836
17-03-17 20:54:50.548 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:54:50.548 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:50.548 -07 000000458 INF: FPGA: Recv ZSGSRD 36831
17-03-17 20:54:50.558 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:54:50.558 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:50.558 -07 000000429 INF: FPGA: Recv ZSGSRD 36825
17-03-17 20:54:50.568 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:50.568 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:50.568 -07 000000429 INF: FPGA: Recv ZSGSRD 36833
17-03-17 20:54:50.578 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:50.578 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:50.578 -07 000000458 INF: FPGA: Recv ZSGSRD 36829
17-03-17 20:54:50.588 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:50.588 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:50.588 -07 000000576 INF: FPGA: Recv ZSGSRD 36833
17-03-17 20:54:50.598 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:50.608 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:50.608 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.024884,
17-03-17 20:54:50.608 -07 000000424 INF: FPGA: Recv ZSGSRD 36828
17-03-17 20:54:50.618 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:54:50.628 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:50.628 -07 000000462 INF: FPGA: Recv ZSGSRD 36828
17-03-17 20:54:50.638 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:54:50.638 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:50.638 -07 000000626 INF: FPGA: Recv ZSGSRD 36833
17-03-17 20:54:50.648 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:54:50.668 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:50.668 -07 000000626 INF: FPGA: Recv ZSGSRD 36832
17-03-17 20:54:50.678 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:54:50.678 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:50.678 -07 000000501 INF: FPGA: Recv ZPIEZORD 33196
17-03-17 20:54:50.688 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:50.688 -07 000000512 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.897 V. Piezo Error = -8.1 V.
17-03-17 20:54:50.688 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36831 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36832 (-176.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36825 (-176.0 uncal um), Max = 36836 (-176.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:54:50.688 -07 000000512 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36831, posNoise = 5, negNoise = 6
17-03-17 20:54:50.688 -07 000000512 INF: Z Motor: After move to -0.176924, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:50.688 -07 000000512 INF: Z Motor: Settle wait time = 1444 ms, measure time = 141 ms (allowed 150 ms), total time = 1585 ms
17-03-17 20:54:50.688 -07 000000512 INF: Z Motor: Waiting extra 9 ms after reading position to reach expected total of 150 ms
17-03-17 20:54:50.698 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 20:54:50.698 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:54:50.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:50.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:50.698 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:50.698 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:50.698 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:54:50.698 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:50.698 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:54:50.698 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:54:50.708 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:54:50.708 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:54:50.718 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:54:50.718 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:54:50.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:54:50.758 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:54:50.958 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:54:50.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:54:50.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:54:50.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) start.
17-03-17 20:54:50.998 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:54:51.008 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 20:54:51.008 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 287 ms overall
17-03-17 20:54:51.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:54:51.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:51.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:54:51.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:54:51.108 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:51.108 -07 000000448 INF: Autofocus start
17-03-17 20:54:51.108 -07 000000448 INF: MeasureProfile start
17-03-17 20:54:51.108 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:51.118 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:54:51.118 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:54:51.118 -07 000000448 INF: MeasureProfile done
17-03-17 20:54:51.118 -07 000000448 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 20:54:51.118 -07 000000448 INF: Autofocus finished
17-03-17 20:54:51.318 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:54:51.318 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:54:51.318 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.176933509404333. ----------
17-03-17 20:54:51.318 -07 000000610 INF: Cycle	44	Tile	8	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:54:51.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37129, sync = True, waitForSettling = True)
17-03-17 20:54:51.328 -07 000000610 INF: Z Motor: Moving to -0.169966 mm, started at -0.176934 mm, distance = 6.97 um
17-03-17 20:54:51.328 -07 000000610 INF: FPGA: Xmit ZDACW 37129\n [Z Motor]
17-03-17 20:54:51.328 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:54:51.338 -07 000000610 INF: FPGA: 'ZDACW 37129' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:54:51.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:51.338 -07 000000462 INF: FPGA: Recv ZDACR 37129
17-03-17 20:54:51.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:51.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:54:51.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:51.498 -07 000000415 INF: FPGA: Recv ZSGSRD 35747
17-03-17 20:54:51.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:54:51.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:51.508 -07 000000576 INF: FPGA: Recv ZSGSRD 35748
17-03-17 20:54:51.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:51.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:51.518 -07 000000541 INF: FPGA: Recv ZSGSRD 35748
17-03-17 20:54:51.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:51.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:51.528 -07 000000576 INF: FPGA: Recv ZSGSRD 35742
17-03-17 20:54:51.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:51.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:51.538 -07 000000541 INF: FPGA: Recv ZSGSRD 35746
17-03-17 20:54:51.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:51.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:51.548 -07 000000512 INF: FPGA: Recv ZSGSRD 35750
17-03-17 20:54:51.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:51.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:51.558 -07 000000541 INF: FPGA: Recv ZSGSRD 35745
17-03-17 20:54:51.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:51.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:51.568 -07 000000576 INF: FPGA: Recv ZSGSRD 35749
17-03-17 20:54:51.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:51.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:51.578 -07 000000541 INF: FPGA: Recv ZSGSRD 35745
17-03-17 20:54:51.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:51.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:51.588 -07 000000576 INF: FPGA: Recv ZSGSRD 35748
17-03-17 20:54:51.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:51.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:51.598 -07 000000541 INF: FPGA: Recv ZPIEZORD 31748
17-03-17 20:54:51.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:51.608 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.666 V. Piezo Error = -8.8 V.
17-03-17 20:54:51.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35747 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35748 (-169.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35742 (-169.1 uncal um), Max = 35750 (-169.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:54:51.608 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35747, posNoise = 3, negNoise = 5
17-03-17 20:54:51.608 -07 000000610 INF: Z Motor: After move to -0.169966, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:51.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:54:51.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:51.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:51.608 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:51.608 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:51.608 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:54:51.608 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:51.608 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:54:51.608 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:54:51.608 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:54:51.608 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:54:51.608 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:54:51.608 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:54:51.618 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:54:51.618 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:54:51.618 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:54:51.618 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:54:51.628 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:54:51.628 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:54:51.628 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:54:51.628 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:54:51.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37306 150\n [Camera]
17-03-17 20:54:51.828 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:54:51.828 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:54:51.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:54:52.248 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:54:52.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:54:52.248 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:54:52.248 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:54:52.248 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 20:54:52.248 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:54:52.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:54:52.248 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:54:52.258 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:54:52.258 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 20:54:52.438 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37306 807
17-03-17 20:54:52.588 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:54:52.628 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:54:52.628 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:54:52.628 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:52.628 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:54:52.628 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:54:52.628 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:52.638 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:54:52.638 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:54:52.638 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:54:52.638 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:54:52.798 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:54:52.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:54:52.798 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:54:52.798 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:54:52.798 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 20:54:52.798 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:54:52.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:54:52.798 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:54:52.798 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:54:52.798 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 20:54:52.988 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-17 20:54:52.988 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:54:52.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37306 150' command took 2 ms to send, 1352 ms to get response, and 1359 ms overall
17-03-17 20:54:52.988 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:54:52.988 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.169969663442664. ------
17-03-17 20:54:52.988 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:52.988 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17631 mm
17-03-17 20:54:52.988 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:54:52.998 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:54:52.998 -07 000000512 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 20:54:52.998 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:52.998 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38516, sync = True, waitForSettling = False)
17-03-17 20:54:52.998 -07 000000459 INF: Z Motor: Moving to -0.176315 mm, started at -0.169970 mm, distance = -6.35 um
17-03-17 20:54:53.008 -07 000000459 INF: FPGA: Xmit ZDACW 38516\n [Z Motor]
17-03-17 20:54:53.188 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 20:54:53.188 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:54:53.188 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:53.188 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:54:53.198 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:54:53.198 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:53.198 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:54:53.198 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:54:53.198 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:54:53.198 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:54:53.208 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:53.208 -07 000000541 INF: FPGA: Recv YRDPOS 134583
17-03-17 20:54:53.208 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:54:53.208 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 207 ms to get response, and 213 ms overall
17-03-17 20:54:53.208 -07 000000512 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:53.208 -07 000000512 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:54:53.208 -07 000000512 INF: Y Motor: Moving 1341 steps-17
17-03-17 20:54:53.208 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:54:53.208 -07 000000459 INF: FPGA: 'ZDACW 38516' command took 0 ms to send, 197 ms to get response, and 213 ms overall
17-03-17 20:54:53.208 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 217 ms to get response, and 220 ms overall
17-03-17 20:54:53.218 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:53.218 -07 000000541 INF: FPGA: Recv ZDACR 38516
17-03-17 20:54:53.228 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:54:53.228 -07 000000459 INF: Z Motor: MoveAbsStepped took 225 ms (did NOT wait for settling yet))
17-03-17 20:54:53.228 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:54:53.428 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:54:53.428 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-17 20:54:53.588 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:54:53.588 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 376 ms to get response, and 378 ms overall
17-03-17 20:54:53.628 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:53.628 -07 000000429 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:54:53.638 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:54:53.638 -07 000000512 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:53.638 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:54:53.638 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.218 mm/sec
17-03-17 20:54:54.588 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:54.588 -07 000000501 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:54:54.598 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:54.598 -07 000000512 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:54.618 -07 000000512 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:54:54.618 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:54:54.618 -07 000000512 INF: Y Motor: Moved to 66.5391 after 1620 ms (table move)
17-03-17 20:54:54.618 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176315 mm (DAC = 38516)
17-03-17 20:54:54.618 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:54.628 -07 000000415 INF: FPGA: Recv ZSGSRD 36748
17-03-17 20:54:54.628 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:54:54.628 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:54.628 -07 000000501 INF: FPGA: Recv ZSGSRD 36736
17-03-17 20:54:54.638 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:54.638 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:54.638 -07 000000429 INF: FPGA: Recv ZSGSRD 36731
17-03-17 20:54:54.648 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:54.648 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:54.648 -07 000000459 INF: FPGA: Recv ZSGSRD 36729
17-03-17 20:54:54.658 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:54.658 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:54.658 -07 000000502 INF: FPGA: Recv ZSGSRD 36735
17-03-17 20:54:54.668 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:54.668 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:54.668 -07 000000415 INF: FPGA: Recv ZSGSRD 36742
17-03-17 20:54:54.678 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:54.678 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:54.678 -07 000000502 INF: FPGA: Recv ZSGSRD 36732
17-03-17 20:54:54.688 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:54.688 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:54.688 -07 000000429 INF: FPGA: Recv ZSGSRD 36747
17-03-17 20:54:54.698 -07 000000576 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:54.698 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:54.698 -07 000000415 INF: FPGA: Recv ZSGSRD 36737
17-03-17 20:54:54.708 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:54.708 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:54.708 -07 000000429 INF: FPGA: Recv ZSGSRD 36725
17-03-17 20:54:54.718 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:54.718 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:54.718 -07 000000502 INF: FPGA: Recv ZPIEZORD 33092
17-03-17 20:54:54.728 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:54.728 -07 000000576 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.877 V. Piezo Error = -8.1 V.
17-03-17 20:54:54.728 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36736 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36736 (-175.4 uncal um), StdDev = 8 (0.1 uncal um), Range = 23 (0.1 uncal um), Min = 36725 (-175.4 uncal um), Max = 36748 (-175.5 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 20:54:54.728 -07 000000576 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36736, posNoise = 12, negNoise = 11
17-03-17 20:54:54.728 -07 000000576 INF: Z Motor: After move to -0.176315, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:54.728 -07 000000576 INF: Z Motor: Settle wait time = 1622 ms, measure time = 103 ms (allowed 150 ms), total time = 1725 ms
17-03-17 20:54:54.728 -07 000000576 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:54:54.778 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1781 ms
17-03-17 20:54:54.778 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:54:54.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:54.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:54.778 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:54.778 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:54.778 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:54:54.778 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:54.778 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:54:54.778 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:54:54.788 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:54:54.788 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:54:54.798 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:54:54.798 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:54:54.798 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:54:54.848 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:54:55.048 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:54:55.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:54:55.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:54:55.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1177947920, 0x0, 559484976) start.
17-03-17 20:54:55.078 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:54:55.088 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 20:54:55.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 20:54:55.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1177947920, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 20:54:55.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:55.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:54:55.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:54:55.188 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:55.188 -07 000000512 INF: Autofocus start
17-03-17 20:54:55.188 -07 000000512 INF: MeasureProfile start
17-03-17 20:54:55.188 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:55.198 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:54:55.198 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:54:55.198 -07 000000512 INF: MeasureProfile done
17-03-17 20:54:55.208 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:54:55.208 -07 000000512 INF: Autofocus finished
17-03-17 20:54:55.398 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:54:55.398 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:54:55.398 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.176323209250865. ----------
17-03-17 20:54:55.398 -07 000000610 INF: Cycle	44	Tile	9	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:54:55.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37031, sync = True, waitForSettling = True)
17-03-17 20:54:55.408 -07 000000610 INF: Z Motor: Moving to -0.169517 mm, started at -0.176323 mm, distance = 6.81 um
17-03-17 20:54:55.408 -07 000000610 INF: FPGA: Xmit ZDACW 37031\n [Z Motor]
17-03-17 20:54:55.408 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:54:55.418 -07 000000610 INF: FPGA: 'ZDACW 37031' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:55.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:55.418 -07 000000429 INF: FPGA: Recv ZDACR 37031
17-03-17 20:54:55.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:55.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:54:55.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:55.578 -07 000000429 INF: FPGA: Recv ZSGSRD 35672
17-03-17 20:54:55.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:54:55.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:55.588 -07 000000415 INF: FPGA: Recv ZSGSRD 35680
17-03-17 20:54:55.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:55.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:55.598 -07 000000429 INF: FPGA: Recv ZSGSRD 35680
17-03-17 20:54:55.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:55.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:55.608 -07 000000415 INF: FPGA: Recv ZSGSRD 35677
17-03-17 20:54:55.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:55.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:55.618 -07 000000415 INF: FPGA: Recv ZSGSRD 35678
17-03-17 20:54:55.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:55.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:55.638 -07 000000502 INF: FPGA: Recv ZSGSRD 35687
17-03-17 20:54:55.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:54:55.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:55.648 -07 000000576 INF: FPGA: Recv ZSGSRD 35679
17-03-17 20:54:55.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:55.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:55.678 -07 000000415 INF: FPGA: Recv ZSGSRD 35675
17-03-17 20:54:55.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:54:55.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:55.688 -07 000000415 INF: FPGA: Recv ZSGSRD 35679
17-03-17 20:54:55.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:55.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:55.718 -07 000000501 INF: FPGA: Recv ZSGSRD 35686
17-03-17 20:54:55.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:54:55.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:55.738 -07 000000502 INF: FPGA: Recv ZPIEZORD 31674
17-03-17 20:54:55.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:54:55.748 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -8.8 V.
17-03-17 20:54:55.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35679 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35679 (-168.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35672 (-168.6 uncal um), Max = 35687 (-168.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:54:55.748 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35679, posNoise = 8, negNoise = 7
17-03-17 20:54:55.748 -07 000000610 INF: Z Motor: After move to -0.169517, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:55.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 341 ms)
17-03-17 20:54:55.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:55.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:55.748 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:55.748 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:55.748 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:54:55.748 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:54:55.748 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:54:55.748 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:55.748 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:54:55.748 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:54:55.748 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 20:54:55.748 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:54:55.758 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:54:55.758 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:54:55.758 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:54:55.758 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:54:55.768 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:54:55.768 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:54:55.768 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:54:55.768 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:54:55.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37207 150\n [Camera]
17-03-17 20:54:55.968 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:54:56.028 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.008536,
17-03-17 20:54:56.398 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:54:56.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:54:56.398 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:54:56.398 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:54:56.398 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:54:56.398 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:54:56.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:54:56.398 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:54:56.398 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:54:56.398 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:54:56.588 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37207 807
17-03-17 20:54:56.738 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:54:56.768 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 20:54:56.768 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 20:54:56.768 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:56.768 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:54:56.768 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 20:54:56.768 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:56.778 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:54:56.778 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:54:56.778 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:54:56.788 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:54:56.828 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:54:56.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:54:56.938 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:54:56.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:54:56.938 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:54:56.938 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:54:56.938 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 20:54:56.948 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:54:56.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:54:56.948 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:54:56.948 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:54:56.948 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 20:54:57.128 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-17 20:54:57.128 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:54:57.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37207 150' command took 2 ms to send, 1359 ms to get response, and 1363 ms overall
17-03-17 20:54:57.138 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:54:57.138 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.169532817017024. ------
17-03-17 20:54:57.138 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:57.138 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17628 mm
17-03-17 20:54:57.138 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:54:57.138 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:54:57.138 -07 000000415 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 20:54:57.148 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:57.338 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:54:57.338 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:54:57.338 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:57.338 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:54:57.338 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:54:57.338 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:57.348 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:54:57.348 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:54:57.348 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 20:54:57.348 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:54:57.358 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38508, sync = True, waitForSettling = False)
17-03-17 20:54:57.358 -07 000000576 INF: Z Motor: Moving to -0.176278 mm, started at -0.169533 mm, distance = -6.75 um
17-03-17 20:54:57.358 -07 000000576 INF: FPGA: Xmit ZDACW 38508\n [Z Motor]
17-03-17 20:54:57.368 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:57.368 -07 000000512 INF: FPGA: Recv YRDPOS 136273
17-03-17 20:54:57.368 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:54:57.368 -07 000000576 INF: FPGA: 'ZDACW 38508' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:54:57.368 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 220 ms to get response, and 225 ms overall
17-03-17 20:54:57.368 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:57.368 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 210 ms to get response, and 222 ms overall
17-03-17 20:54:57.368 -07 000000415 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:57.368 -07 000000512 INF: FPGA: Recv ZDACR 38508
17-03-17 20:54:57.368 -07 000000415 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:54:57.368 -07 000000415 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:54:57.378 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:57.378 -07 000000576 INF: Z Motor: MoveAbsStepped took 13 ms (did NOT wait for settling yet))
17-03-17 20:54:57.378 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:54:57.388 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:54:57.588 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:54:57.588 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 20:54:57.758 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 20:54:57.758 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 385 ms overall
17-03-17 20:54:57.788 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:57.798 -07 000000512 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:54:57.798 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:54:57.798 -07 000000415 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:57.798 -07 000000415 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 20:54:57.798 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.844 mm, average velocity = 2.191 mm/sec
17-03-17 20:54:58.748 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:54:58.748 -07 000000512 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:54:58.758 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:58.758 -07 000000415 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:54:58.778 -07 000000415 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:54:58.778 -07 000000415 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:54:58.778 -07 000000415 INF: Y Motor: Moved to 67.3726 after 1636 ms (table move)
17-03-17 20:54:58.778 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176278 mm (DAC = 38508)
17-03-17 20:54:58.778 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:58.778 -07 000000458 INF: FPGA: Recv ZSGSRD 36728
17-03-17 20:54:58.788 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:54:58.788 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:58.788 -07 000000576 INF: FPGA: Recv ZSGSRD 36737
17-03-17 20:54:58.798 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:58.798 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:58.798 -07 000000512 INF: FPGA: Recv ZSGSRD 36732
17-03-17 20:54:58.808 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:58.808 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:58.808 -07 000000458 INF: FPGA: Recv ZSGSRD 36734
17-03-17 20:54:58.818 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:58.818 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:58.818 -07 000000512 INF: FPGA: Recv ZSGSRD 36723
17-03-17 20:54:58.828 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:58.828 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:58.828 -07 000000576 INF: FPGA: Recv ZSGSRD 36731
17-03-17 20:54:58.838 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:58.838 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:58.838 -07 000000512 INF: FPGA: Recv ZSGSRD 36725
17-03-17 20:54:58.848 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:58.848 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:58.848 -07 000000415 INF: FPGA: Recv ZSGSRD 36729
17-03-17 20:54:58.858 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:58.858 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:58.858 -07 000000512 INF: FPGA: Recv ZSGSRD 36731
17-03-17 20:54:58.868 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:58.868 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:58.868 -07 000000475 INF: FPGA: Recv ZSGSRD 36729
17-03-17 20:54:58.878 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:54:58.878 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:58.878 -07 000000576 INF: FPGA: Recv ZPIEZORD 33051
17-03-17 20:54:58.888 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:58.888 -07 000000459 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.876 V. Piezo Error = -8.2 V.
17-03-17 20:54:58.888 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36730 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36730 (-175.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36723 (-175.3 uncal um), Max = 36737 (-175.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:54:58.888 -07 000000459 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36730, posNoise = 7, negNoise = 7
17-03-17 20:54:58.888 -07 000000459 INF: Z Motor: After move to -0.176278, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:58.888 -07 000000459 INF: Z Motor: Settle wait time = 1419 ms, measure time = 104 ms (allowed 150 ms), total time = 1523 ms
17-03-17 20:54:58.888 -07 000000459 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:54:58.938 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1795 ms
17-03-17 20:54:58.938 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:54:58.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:58.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:58.938 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:58.938 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:58.938 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:54:58.938 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:58.938 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:54:58.938 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:54:58.938 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:54:58.938 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:54:58.958 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:54:58.958 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:54:58.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:54:59.008 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 20:54:59.208 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 20:54:59.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 20:54:59.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:54:59.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 20:54:59.248 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:54:59.248 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 20:54:59.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:54:59.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 20:54:59.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:54:59.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:54:59.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:54:59.348 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:54:59.348 -07 000000512 INF: Autofocus start
17-03-17 20:54:59.348 -07 000000512 INF: MeasureProfile start
17-03-17 20:54:59.348 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:54:59.358 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:54:59.358 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:54:59.358 -07 000000512 INF: MeasureProfile done
17-03-17 20:54:59.358 -07 000000512 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:54:59.358 -07 000000512 INF: Autofocus finished
17-03-17 20:54:59.558 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:54:59.558 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 20:54:59.568 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.176284663978015. ----------
17-03-17 20:54:59.568 -07 000000610 INF: Cycle	44	Tile	10	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:54:59.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37041, sync = True, waitForSettling = True)
17-03-17 20:54:59.568 -07 000000610 INF: Z Motor: Moving to -0.169563 mm, started at -0.176285 mm, distance = 6.72 um
17-03-17 20:54:59.568 -07 000000610 INF: FPGA: Xmit ZDACW 37041\n [Z Motor]
17-03-17 20:54:59.568 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:54:59.578 -07 000000610 INF: FPGA: 'ZDACW 37041' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:54:59.578 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:54:59.578 -07 000000458 INF: FPGA: Recv ZDACR 37041
17-03-17 20:54:59.588 -07 000000610 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:59.588 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:54:59.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:59.738 -07 000000458 INF: FPGA: Recv ZSGSRD 35685
17-03-17 20:54:59.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:54:59.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:59.748 -07 000000415 INF: FPGA: Recv ZSGSRD 35681
17-03-17 20:54:59.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:59.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:59.758 -07 000000433 INF: FPGA: Recv ZSGSRD 35682
17-03-17 20:54:59.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:59.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:59.768 -07 000000462 INF: FPGA: Recv ZSGSRD 35682
17-03-17 20:54:59.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:59.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:59.778 -07 000000433 INF: FPGA: Recv ZSGSRD 35687
17-03-17 20:54:59.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:59.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:59.788 -07 000000462 INF: FPGA: Recv ZSGSRD 35687
17-03-17 20:54:59.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:59.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:59.798 -07 000000462 INF: FPGA: Recv ZSGSRD 35692
17-03-17 20:54:59.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:59.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:59.808 -07 000000512 INF: FPGA: Recv ZSGSRD 35686
17-03-17 20:54:59.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:59.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:59.818 -07 000000462 INF: FPGA: Recv ZSGSRD 35683
17-03-17 20:54:59.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:59.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:54:59.828 -07 000000462 INF: FPGA: Recv ZSGSRD 35686
17-03-17 20:54:59.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:59.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:54:59.838 -07 000000462 INF: FPGA: Recv ZPIEZORD 31705
17-03-17 20:54:59.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:54:59.848 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.652 V. Piezo Error = -8.8 V.
17-03-17 20:54:59.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35685 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35686 (-168.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35681 (-168.7 uncal um), Max = 35692 (-168.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:54:59.848 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35685, posNoise = 7, negNoise = 4
17-03-17 20:54:59.848 -07 000000610 INF: Z Motor: After move to -0.169563, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:54:59.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:54:59.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:54:59.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:54:59.848 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:54:59.848 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:54:59.848 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:54:59.848 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:54:59.848 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:54:59.848 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:54:59.848 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:54:59.848 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:54:59.848 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:54:59.848 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:54:59.858 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:54:59.858 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:54:59.858 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:54:59.858 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:54:59.868 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:54:59.868 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:54:59.868 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:54:59.868 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:54:59.868 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37218 150\n [Camera]
17-03-17 20:55:00.068 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:55:00.488 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:55:00.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:55:00.488 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:00.488 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:00.488 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 20:55:00.488 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:55:00.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:55:00.488 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:00.488 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:00.488 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 20:55:00.678 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37218 808
17-03-17 20:55:00.828 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:55:00.868 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:55:00.868 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:55:00.868 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:00.868 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:55:00.868 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:55:00.868 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:00.868 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:00.878 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:00.878 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:55:00.878 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:55:01.038 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:55:01.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:55:01.038 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:01.168 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:55:01.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:55:01.168 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:01.168 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:01.168 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 20:55:01.178 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:01.178 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 20:55:01.228 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-17 20:55:01.228 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:55:01.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37218 150' command took 2 ms to send, 1353 ms to get response, and 1359 ms overall
17-03-17 20:55:01.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:55:01.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.169571362289875. ------
17-03-17 20:55:01.228 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:01.238 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17594 mm
17-03-17 20:55:01.238 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:55:01.238 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:01.238 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:55:01.238 -07 000000458 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 20:55:01.238 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38435, sync = True, waitForSettling = False)
17-03-17 20:55:01.238 -07 000000608 INF: Z Motor: Moving to -0.175944 mm, started at -0.169571 mm, distance = -6.37 um
17-03-17 20:55:01.248 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:01.248 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:01.248 -07 000000501 INF: FPGA: Recv YRDPOS 137979
17-03-17 20:55:01.258 -07 000000458 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:55:01.258 -07 000000458 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:01.258 -07 000000458 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:55:01.258 -07 000000458 INF: Y Motor: Moving 1344 steps-22
17-03-17 20:55:01.258 -07 000000608 INF: FPGA: Xmit ZDACW 38435\n [Z Motor]
17-03-17 20:55:01.258 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:55:01.268 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:55:01.268 -07 000000608 INF: FPGA: 'ZDACW 38435' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 20:55:01.278 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:55:01.288 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:01.288 -07 000000433 INF: FPGA: Recv ZDACR 38435
17-03-17 20:55:01.298 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:55:01.298 -07 000000608 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 20:55:01.558 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:55:01.558 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:55:01.558 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:01.568 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:01.568 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:55:01.568 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:55:01.568 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:01.568 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:01.568 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 535 ms.
17-03-17 20:55:01.578 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:55:01.588 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:55:01.588 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 311 ms to get response, and 339 ms overall
17-03-17 20:55:01.588 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.008536,
17-03-17 20:55:01.658 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 20:55:01.658 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 20:55:01.688 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:01.698 -07 000000462 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:55:01.698 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:55:01.698 -07 000000458 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:01.698 -07 000000458 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 20:55:01.698 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.840 mm, average velocity = 2.095 mm/sec
17-03-17 20:55:01.828 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:55:01.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:55:02.648 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:02.648 -07 000000462 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:55:02.658 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:02.658 -07 000000458 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:02.678 -07 000000458 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:55:02.678 -07 000000458 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:55:02.678 -07 000000458 INF: Y Motor: Moved to 68.2051 after 1437 ms (table move)
17-03-17 20:55:02.678 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175944 mm (DAC = 38435)
17-03-17 20:55:02.678 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:02.678 -07 000000459 INF: FPGA: Recv ZSGSRD 36682
17-03-17 20:55:02.688 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:55:02.688 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:02.688 -07 000000458 INF: FPGA: Recv ZSGSRD 36674
17-03-17 20:55:02.698 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:02.698 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:02.698 -07 000000415 INF: FPGA: Recv ZSGSRD 36671
17-03-17 20:55:02.708 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:02.708 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:02.708 -07 000000462 INF: FPGA: Recv ZSGSRD 36677
17-03-17 20:55:02.718 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:02.718 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:02.718 -07 000000415 INF: FPGA: Recv ZSGSRD 36678
17-03-17 20:55:02.728 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:02.728 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:02.728 -07 000000458 INF: FPGA: Recv ZSGSRD 36677
17-03-17 20:55:02.738 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:02.738 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:02.738 -07 000000458 INF: FPGA: Recv ZSGSRD 36681
17-03-17 20:55:02.748 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:02.748 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:02.748 -07 000000458 INF: FPGA: Recv ZSGSRD 36681
17-03-17 20:55:02.758 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:02.758 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:02.758 -07 000000415 INF: FPGA: Recv ZSGSRD 36677
17-03-17 20:55:02.768 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:02.768 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:02.768 -07 000000415 INF: FPGA: Recv ZSGSRD 36670
17-03-17 20:55:02.778 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:02.778 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:02.778 -07 000000458 INF: FPGA: Recv ZPIEZORD 33040
17-03-17 20:55:02.788 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:02.788 -07 000000576 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.865 V. Piezo Error = -8.1 V.
17-03-17 20:55:02.788 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36677 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36677 (-175.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36670 (-175.0 uncal um), Max = 36682 (-175.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:55:02.788 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36677, posNoise = 5, negNoise = 7
17-03-17 20:55:02.788 -07 000000576 INF: Z Motor: After move to -0.175944, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:02.788 -07 000000576 INF: Z Motor: Settle wait time = 1440 ms, measure time = 105 ms (allowed 150 ms), total time = 1545 ms
17-03-17 20:55:02.788 -07 000000576 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:55:02.838 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 20:55:02.838 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:55:02.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:02.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:02.838 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:02.838 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:55:02.838 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:02.838 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:02.848 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:02.848 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:55:02.848 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:55:02.848 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:55:02.858 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:55:02.858 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 20:55:02.868 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:55:02.908 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:55:03.108 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:55:03.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:55:03.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:55:03.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:55:03.148 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:55:03.148 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 20:55:03.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:55:03.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 20:55:03.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:03.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:55:03.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 20:55:03.248 -07 000000462 INF: Autofocus start
17-03-17 20:55:03.248 -07 000000462 INF: MeasureProfile start
17-03-17 20:55:03.248 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:03.248 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:03.258 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:55:03.258 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:55:03.258 -07 000000462 INF: MeasureProfile done
17-03-17 20:55:03.258 -07 000000462 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:55:03.258 -07 000000462 INF: Autofocus finished
17-03-17 20:55:03.458 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:55:03.458 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:55:03.458 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175944180734502. ----------
17-03-17 20:55:03.468 -07 000000610 INF: Cycle	44	Tile	11	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:55:03.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36949, sync = True, waitForSettling = True)
17-03-17 20:55:03.468 -07 000000610 INF: Z Motor: Moving to -0.169142 mm, started at -0.175944 mm, distance = 6.80 um
17-03-17 20:55:03.468 -07 000000610 INF: FPGA: Xmit ZDACW 36949\n [Z Motor]
17-03-17 20:55:03.468 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:55:03.478 -07 000000610 INF: FPGA: 'ZDACW 36949' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:55:03.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:03.478 -07 000000382 INF: FPGA: Recv ZDACR 36949
17-03-17 20:55:03.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:03.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:55:03.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:03.638 -07 000000459 INF: FPGA: Recv ZSGSRD 35619
17-03-17 20:55:03.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:03.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:03.648 -07 000000415 INF: FPGA: Recv ZSGSRD 35622
17-03-17 20:55:03.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:03.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:03.658 -07 000000458 INF: FPGA: Recv ZSGSRD 35615
17-03-17 20:55:03.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:03.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:03.668 -07 000000576 INF: FPGA: Recv ZSGSRD 35619
17-03-17 20:55:03.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:03.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:03.678 -07 000000462 INF: FPGA: Recv ZSGSRD 35622
17-03-17 20:55:03.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:03.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:03.688 -07 000000415 INF: FPGA: Recv ZSGSRD 35617
17-03-17 20:55:03.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:03.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:03.698 -07 000000458 INF: FPGA: Recv ZSGSRD 35620
17-03-17 20:55:03.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:03.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:03.708 -07 000000424 INF: FPGA: Recv ZSGSRD 35620
17-03-17 20:55:03.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:03.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:03.718 -07 000000608 INF: FPGA: Recv ZSGSRD 35617
17-03-17 20:55:03.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:03.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:03.728 -07 000000458 INF: FPGA: Recv ZSGSRD 35621
17-03-17 20:55:03.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:03.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:03.738 -07 000000462 INF: FPGA: Recv ZPIEZORD 31646
17-03-17 20:55:03.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:03.748 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.638 V. Piezo Error = -8.8 V.
17-03-17 20:55:03.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35619 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35620 (-168.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35615 (-168.2 uncal um), Max = 35622 (-168.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:55:03.748 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35619, posNoise = 3, negNoise = 4
17-03-17 20:55:03.748 -07 000000610 INF: Z Motor: After move to -0.169142, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:03.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:55:03.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:03.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:03.748 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:03.748 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:03.748 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:55:03.748 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:03.748 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:55:03.748 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:55:03.748 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:55:03.748 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:55:03.748 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:55:03.748 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:55:03.748 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:55:03.748 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:55:03.758 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:55:03.758 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:55:03.758 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:55:03.758 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:55:03.758 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:55:03.758 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:55:03.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37126 150\n [Camera]
17-03-17 20:55:03.968 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:55:04.388 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:55:04.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:55:04.388 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:04.388 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:55:04.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:55:04.388 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:04.398 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:04.398 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 20:55:04.398 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:04.398 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 20:55:04.578 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37126 809
17-03-17 20:55:04.728 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:55:04.768 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 20:55:04.778 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 20:55:04.778 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:04.778 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:55:04.778 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:55:04.778 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:04.778 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:04.778 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:55:04.778 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:04.788 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:55:04.938 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:55:04.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:55:04.938 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:05.048 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:55:05.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:55:05.058 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:05.058 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:05.058 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:55:05.058 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:05.058 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:55:05.128 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-17 20:55:05.128 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:55:05.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37126 150' command took 2 ms to send, 1352 ms to get response, and 1359 ms overall
17-03-17 20:55:05.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:55:05.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.169147364288518. ------
17-03-17 20:55:05.128 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:05.128 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17578 mm
17-03-17 20:55:05.128 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:55:05.138 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:55:05.138 -07 000000475 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 20:55:05.138 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:05.138 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:55:05.138 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:05.138 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38400, sync = True, waitForSettling = False)
17-03-17 20:55:05.138 -07 000000415 INF: Z Motor: Moving to -0.175784 mm, started at -0.169147 mm, distance = -6.64 um
17-03-17 20:55:05.138 -07 000000458 INF: FPGA: Recv YRDPOS 139685
17-03-17 20:55:05.148 -07 000000415 INF: FPGA: Xmit ZDACW 38400\n [Z Motor]
17-03-17 20:55:05.148 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:05.148 -07 000000475 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:05.148 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 20:55:05.148 -07 000000475 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:55:05.148 -07 000000475 INF: Y Motor: Moving 1339 steps-15
17-03-17 20:55:05.158 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:55:05.158 -07 000000415 INF: FPGA: 'ZDACW 38400' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:55:05.168 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:55:05.178 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:05.178 -07 000000448 INF: FPGA: Recv ZDACR 38400
17-03-17 20:55:05.188 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:55:05.188 -07 000000415 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 20:55:05.358 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:55:05.358 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 20:55:05.448 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 20:55:05.448 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:55:05.448 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:05.458 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:55:05.458 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:55:05.458 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:05.458 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:05.458 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:05.458 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 20:55:05.468 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:55:05.538 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 20:55:05.538 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 20:55:05.578 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:05.578 -07 000000415 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:55:05.588 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:55:05.588 -07 000000475 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:05.588 -07 000000475 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:55:05.588 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.838 mm, average velocity = 2.137 mm/sec
17-03-17 20:55:06.558 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:06.558 -07 000000458 INF: FPGA: Recv YRDPOS 141369
17-03-17 20:55:06.568 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:55:06.568 -07 000000475 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:06.588 -07 000000475 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:55:06.588 -07 000000475 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:55:06.588 -07 000000475 INF: Y Motor: Moved to 69.0278 after 1454 ms (table move)
17-03-17 20:55:06.588 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175784 mm (DAC = 38400)
17-03-17 20:55:06.598 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:06.598 -07 000000608 INF: FPGA: Recv ZSGSRD 36649
17-03-17 20:55:06.608 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:55:06.608 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:06.608 -07 000000608 INF: FPGA: Recv ZSGSRD 36645
17-03-17 20:55:06.618 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:06.618 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:06.618 -07 000000576 INF: FPGA: Recv ZSGSRD 36653
17-03-17 20:55:06.628 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:06.638 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:06.638 -07 000000475 INF: FPGA: Recv ZSGSRD 36652
17-03-17 20:55:06.648 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:55:06.648 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:06.648 -07 000000448 INF: FPGA: Recv ZSGSRD 36652
17-03-17 20:55:06.658 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:06.658 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:06.658 -07 000000576 INF: FPGA: Recv ZSGSRD 36655
17-03-17 20:55:06.668 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:06.668 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:06.668 -07 000000576 INF: FPGA: Recv ZSGSRD 36651
17-03-17 20:55:06.678 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:06.678 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:06.678 -07 000000475 INF: FPGA: Recv ZSGSRD 36654
17-03-17 20:55:06.688 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:06.688 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:06.688 -07 000000608 INF: FPGA: Recv ZSGSRD 36652
17-03-17 20:55:06.698 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:06.698 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:06.698 -07 000000576 INF: FPGA: Recv ZSGSRD 36650
17-03-17 20:55:06.708 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:06.708 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:06.708 -07 000000576 INF: FPGA: Recv ZPIEZORD 32978
17-03-17 20:55:06.718 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:06.718 -07 000000459 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.859 V. Piezo Error = -8.1 V.
17-03-17 20:55:06.718 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36651 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36652 (-174.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36645 (-174.9 uncal um), Max = 36655 (-174.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:55:06.718 -07 000000459 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36651, posNoise = 4, negNoise = 6
17-03-17 20:55:06.718 -07 000000459 INF: Z Motor: After move to -0.175784, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:06.718 -07 000000459 INF: Z Motor: Settle wait time = 1456 ms, measure time = 123 ms (allowed 150 ms), total time = 1579 ms
17-03-17 20:55:06.718 -07 000000459 INF: Z Motor: Waiting extra 27 ms after reading position to reach expected total of 150 ms
17-03-17 20:55:06.748 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-17 20:55:06.748 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:55:06.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:06.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:06.748 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:06.748 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:55:06.748 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:06.748 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:06.748 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:55:06.748 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:55:06.758 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:55:06.758 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:55:06.768 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:55:06.768 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:55:06.768 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:55:06.818 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:55:06.828 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:55:06.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:55:06.948 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.007176,
17-03-17 20:55:07.018 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:55:07.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:55:07.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:55:07.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:55:07.048 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:55:07.058 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:55:07.058 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 20:55:07.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:55:07.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:07.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:55:07.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:55:07.158 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:07.158 -07 000000459 INF: Autofocus start
17-03-17 20:55:07.158 -07 000000459 INF: MeasureProfile start
17-03-17 20:55:07.158 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:07.168 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:55:07.168 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:55:07.168 -07 000000459 INF: MeasureProfile done
17-03-17 20:55:07.168 -07 000000459 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:55:07.168 -07 000000459 INF: Autofocus finished
17-03-17 20:55:07.368 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:55:07.368 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:55:07.378 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.175777151218816. ----------
17-03-17 20:55:07.378 -07 000000610 INF: Cycle	44	Tile	12	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:55:07.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36933, sync = True, waitForSettling = True)
17-03-17 20:55:07.378 -07 000000610 INF: Z Motor: Moving to -0.169068 mm, started at -0.175777 mm, distance = 6.71 um
17-03-17 20:55:07.378 -07 000000610 INF: FPGA: Xmit ZDACW 36933\n [Z Motor]
17-03-17 20:55:07.378 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:55:07.388 -07 000000610 INF: FPGA: 'ZDACW 36933' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:55:07.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:07.388 -07 000000459 INF: FPGA: Recv ZDACR 36933
17-03-17 20:55:07.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:07.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:55:07.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:07.548 -07 000000576 INF: FPGA: Recv ZSGSRD 35612
17-03-17 20:55:07.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:07.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:07.558 -07 000000608 INF: FPGA: Recv ZSGSRD 35614
17-03-17 20:55:07.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:07.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:07.568 -07 000000541 INF: FPGA: Recv ZSGSRD 35603
17-03-17 20:55:07.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:07.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:07.578 -07 000000626 INF: FPGA: Recv ZSGSRD 35604
17-03-17 20:55:07.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:07.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:07.588 -07 000000576 INF: FPGA: Recv ZSGSRD 35608
17-03-17 20:55:07.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:07.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:07.598 -07 000000501 INF: FPGA: Recv ZSGSRD 35609
17-03-17 20:55:07.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:07.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:07.608 -07 000000448 INF: FPGA: Recv ZSGSRD 35603
17-03-17 20:55:07.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:07.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:07.618 -07 000000501 INF: FPGA: Recv ZSGSRD 35600
17-03-17 20:55:07.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:07.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:07.628 -07 000000541 INF: FPGA: Recv ZSGSRD 35609
17-03-17 20:55:07.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:07.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:07.638 -07 000000626 INF: FPGA: Recv ZSGSRD 35609
17-03-17 20:55:07.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:07.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:07.648 -07 000000448 INF: FPGA: Recv ZPIEZORD 31582
17-03-17 20:55:07.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:07.658 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -8.9 V.
17-03-17 20:55:07.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35607 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35608 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35600 (-168.2 uncal um), Max = 35614 (-168.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:55:07.658 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35607, posNoise = 7, negNoise = 7
17-03-17 20:55:07.658 -07 000000610 INF: Z Motor: After move to -0.169068, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:07.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:55:07.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:07.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:07.658 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:07.658 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:07.658 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:55:07.658 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:07.658 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:55:07.658 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:55:07.658 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:55:07.658 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:55:07.658 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:55:07.658 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:55:07.658 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:55:07.658 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:55:07.668 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:55:07.668 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:55:07.668 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:55:07.668 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:55:07.678 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:55:07.678 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:55:07.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 37109 150\n [Camera]
17-03-17 20:55:07.878 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:55:08.298 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:55:08.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:55:08.298 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:08.298 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:08.298 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:55:08.298 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:55:08.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:55:08.308 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:08.308 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:08.308 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1054806064, 0x0, 418435064) start.
17-03-17 20:55:08.488 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37109 807
17-03-17 20:55:08.638 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:55:08.678 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:55:08.678 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:55:08.678 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:08.688 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1054806064, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:55:08.688 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:55:08.688 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:08.688 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:55:08.688 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:55:08.688 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:08.698 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:55:08.848 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:55:08.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:55:08.848 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:08.958 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:55:08.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:55:08.958 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:08.968 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:08.968 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:55:08.968 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:08.968 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:55:09.038 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-17 20:55:09.038 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:55:09.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 37109 150' command took 2 ms to send, 1354 ms to get response, and 1359 ms overall
17-03-17 20:55:09.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:55:09.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.169070273742817. ------
17-03-17 20:55:09.038 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:09.038 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17555 mm
17-03-17 20:55:09.038 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:55:09.048 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:09.048 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:55:09.048 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38350, sync = True, waitForSettling = False)
17-03-17 20:55:09.048 -07 000000448 INF: Z Motor: Moving to -0.175555 mm, started at -0.169070 mm, distance = -6.48 um
17-03-17 20:55:09.048 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:55:09.048 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:55:09.048 -07 000000576 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 20:55:09.058 -07 000000448 INF: FPGA: Xmit ZDACW 38350\n [Z Motor]
17-03-17 20:55:09.058 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:55:09.068 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:09.068 -07 000000448 INF: FPGA: 'ZDACW 38350' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:55:09.068 -07 000000608 INF: FPGA: Recv YRDPOS 141369
17-03-17 20:55:09.078 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:09.078 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:55:09.078 -07 000000576 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:09.078 -07 000000576 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:55:09.078 -07 000000576 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:55:09.078 -07 000000433 INF: FPGA: Recv ZDACR 38350
17-03-17 20:55:09.088 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:55:09.088 -07 000000448 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 20:55:09.088 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:55:09.248 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:55:09.248 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 206 ms overall
17-03-17 20:55:09.348 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:55:09.348 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:55:09.348 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:09.348 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 20:55:09.348 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:55:09.348 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:09.358 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:09.358 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 20:55:09.358 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:09.368 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:55:09.458 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:55:09.458 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 20:55:09.498 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:09.498 -07 000000459 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:55:09.508 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:55:09.508 -07 000000576 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:09.508 -07 000000576 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:55:09.508 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.183 mm/sec
17-03-17 20:55:10.458 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:10.458 -07 000000448 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:55:10.468 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:10.468 -07 000000576 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:10.488 -07 000000576 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:55:10.488 -07 000000576 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:55:10.488 -07 000000576 INF: Y Motor: Moved to 69.8633 after 1440 ms (table move)
17-03-17 20:55:10.488 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175555 mm (DAC = 38350)
17-03-17 20:55:10.488 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:10.498 -07 000000608 INF: FPGA: Recv ZSGSRD 36617
17-03-17 20:55:10.498 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:55:10.498 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:10.498 -07 000000501 INF: FPGA: Recv ZSGSRD 36628
17-03-17 20:55:10.508 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:10.508 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:10.508 -07 000000433 INF: FPGA: Recv ZSGSRD 36618
17-03-17 20:55:10.518 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:10.518 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:10.518 -07 000000576 INF: FPGA: Recv ZSGSRD 36620
17-03-17 20:55:10.528 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:10.528 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:10.528 -07 000000608 INF: FPGA: Recv ZSGSRD 36617
17-03-17 20:55:10.538 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:10.538 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:10.538 -07 000000501 INF: FPGA: Recv ZSGSRD 36618
17-03-17 20:55:10.548 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:10.548 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:10.548 -07 000000433 INF: FPGA: Recv ZSGSRD 36620
17-03-17 20:55:10.558 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:10.558 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:10.558 -07 000000576 INF: FPGA: Recv ZSGSRD 36611
17-03-17 20:55:10.568 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:10.568 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:10.568 -07 000000626 INF: FPGA: Recv ZSGSRD 36615
17-03-17 20:55:10.578 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:10.578 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:10.578 -07 000000501 INF: FPGA: Recv ZSGSRD 36622
17-03-17 20:55:10.588 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:10.588 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:10.588 -07 000000433 INF: FPGA: Recv ZPIEZORD 32944
17-03-17 20:55:10.598 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:10.598 -07 000000541 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.852 V. Piezo Error = -8.1 V.
17-03-17 20:55:10.598 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36619 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36618 (-174.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36611 (-174.6 uncal um), Max = 36628 (-174.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:55:10.598 -07 000000541 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36619, posNoise = 9, negNoise = 8
17-03-17 20:55:10.598 -07 000000541 INF: Z Motor: After move to -0.175555, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:10.598 -07 000000541 INF: Z Motor: Settle wait time = 1444 ms, measure time = 103 ms (allowed 150 ms), total time = 1547 ms
17-03-17 20:55:10.598 -07 000000541 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:55:10.648 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 20:55:10.648 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:55:10.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:10.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:10.648 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:10.648 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:10.648 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:55:10.648 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:10.648 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:10.648 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:55:10.658 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:55:10.658 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:55:10.668 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:55:10.668 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:55:10.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:55:10.718 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:55:10.918 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:55:10.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:55:10.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:55:10.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:55:10.958 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:55:10.958 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 20:55:10.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 20:55:11.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:55:11.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:11.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:55:11.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:55:11.058 -07 000000382 INF: Autofocus start
17-03-17 20:55:11.058 -07 000000382 INF: MeasureProfile start
17-03-17 20:55:11.058 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:11.058 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:11.068 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:55:11.068 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:55:11.068 -07 000000382 INF: MeasureProfile done
17-03-17 20:55:11.068 -07 000000382 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 20:55:11.068 -07 000000382 INF: Autofocus finished
17-03-17 20:55:11.268 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:55:11.268 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:55:11.268 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.175571576430279. ----------
17-03-17 20:55:11.268 -07 000000610 INF: Cycle	44	Tile	13	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:55:11.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36793, sync = True, waitForSettling = True)
17-03-17 20:55:11.278 -07 000000610 INF: Z Motor: Moving to -0.168428 mm, started at -0.175572 mm, distance = 7.14 um
17-03-17 20:55:11.278 -07 000000610 INF: FPGA: Xmit ZDACW 36793\n [Z Motor]
17-03-17 20:55:11.278 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:55:11.288 -07 000000610 INF: FPGA: 'ZDACW 36793' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:11.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:11.288 -07 000000382 INF: FPGA: Recv ZDACR 36793
17-03-17 20:55:11.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:11.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:55:11.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:11.448 -07 000000433 INF: FPGA: Recv ZSGSRD 35505
17-03-17 20:55:11.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:11.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:11.458 -07 000000382 INF: FPGA: Recv ZSGSRD 35511
17-03-17 20:55:11.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:11.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:11.468 -07 000000502 INF: FPGA: Recv ZSGSRD 35512
17-03-17 20:55:11.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:11.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:11.478 -07 000000433 INF: FPGA: Recv ZSGSRD 35508
17-03-17 20:55:11.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:11.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:11.488 -07 000000502 INF: FPGA: Recv ZSGSRD 35502
17-03-17 20:55:11.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:11.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:11.498 -07 000000382 INF: FPGA: Recv ZSGSRD 35507
17-03-17 20:55:11.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:11.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:11.508 -07 000000502 INF: FPGA: Recv ZSGSRD 35510
17-03-17 20:55:11.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:11.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:11.518 -07 000000502 INF: FPGA: Recv ZSGSRD 35509
17-03-17 20:55:11.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:11.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:11.528 -07 000000382 INF: FPGA: Recv ZSGSRD 35506
17-03-17 20:55:11.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:11.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:11.538 -07 000000433 INF: FPGA: Recv ZSGSRD 35508
17-03-17 20:55:11.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:11.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:11.548 -07 000000448 INF: FPGA: Recv ZPIEZORD 31467
17-03-17 20:55:11.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:11.558 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.614 V. Piezo Error = -8.9 V.
17-03-17 20:55:11.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35508 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35508 (-167.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35502 (-167.5 uncal um), Max = 35512 (-167.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:55:11.558 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35508, posNoise = 4, negNoise = 6
17-03-17 20:55:11.558 -07 000000610 INF: Z Motor: After move to -0.168428, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:11.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:55:11.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:11.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:11.558 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:11.558 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:11.558 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:55:11.558 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:55:11.558 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:55:11.558 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:11.558 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:55:11.558 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:55:11.558 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:11.558 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:55:11.558 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:55:11.558 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:55:11.568 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:55:11.568 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:55:11.568 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:55:11.568 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:55:11.568 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:55:11.568 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:55:11.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 36969 150\n [Camera]
17-03-17 20:55:11.778 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:55:11.828 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:55:11.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:55:12.198 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:55:12.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:55:12.198 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:12.198 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:12.198 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:55:12.198 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:55:12.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:55:12.198 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:12.208 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:12.208 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:55:12.308 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.02213,
17-03-17 20:55:12.388 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36969 807
17-03-17 20:55:12.538 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:55:12.578 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:55:12.578 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:55:12.578 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:12.588 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:12.588 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:55:12.588 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:55:12.588 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:12.588 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:55:12.598 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:12.598 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:55:12.748 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:55:12.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:55:12.748 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:12.858 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:55:12.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:55:12.858 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:12.868 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:12.868 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:55:12.868 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:12.868 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:55:12.938 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-17 20:55:12.938 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:55:12.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 36969 150' command took 2 ms to send, 1354 ms to get response, and 1362 ms overall
17-03-17 20:55:12.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:55:12.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.168434276740783. ------
17-03-17 20:55:12.948 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:12.948 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17475 mm
17-03-17 20:55:12.948 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:55:12.948 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:12.948 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:55:12.948 -07 000000462 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 20:55:12.948 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38174, sync = True, waitForSettling = False)
17-03-17 20:55:12.948 -07 000000382 INF: Z Motor: Moving to -0.174749 mm, started at -0.168434 mm, distance = -6.32 um
17-03-17 20:55:12.958 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:55:12.958 -07 000000382 INF: FPGA: Xmit ZDACW 38174\n [Z Motor]
17-03-17 20:55:12.958 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:55:12.968 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:12.968 -07 000000382 INF: FPGA: 'ZDACW 38174' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:55:12.968 -07 000000512 INF: FPGA: Recv YRDPOS 143081
17-03-17 20:55:12.978 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:55:12.978 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:55:12.978 -07 000000462 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:12.988 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:12.988 -07 000000462 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:55:12.988 -07 000000462 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:55:12.988 -07 000000433 INF: FPGA: Recv ZDACR 38174
17-03-17 20:55:12.998 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:55:12.998 -07 000000382 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 20:55:12.998 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:55:13.178 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:55:13.178 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:55:13.248 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:55:13.258 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:55:13.258 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:13.258 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:55:13.258 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:55:13.258 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:13.258 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:55:13.258 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:55:13.258 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 20:55:13.268 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:55:13.368 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 20:55:13.368 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 387 ms overall
17-03-17 20:55:13.408 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:13.408 -07 000000429 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:55:13.418 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:55:13.418 -07 000000462 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:13.418 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:55:13.418 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.169 mm/sec
17-03-17 20:55:14.368 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:14.368 -07 000000415 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:55:14.378 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:14.378 -07 000000462 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:14.398 -07 000000462 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:55:14.398 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:55:14.398 -07 000000462 INF: Y Motor: Moved to 70.6890 after 1445 ms (table move)
17-03-17 20:55:14.398 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174749 mm (DAC = 38174)
17-03-17 20:55:14.398 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:14.398 -07 000000462 INF: FPGA: Recv ZSGSRD 36489
17-03-17 20:55:14.408 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:55:14.408 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:14.408 -07 000000462 INF: FPGA: Recv ZSGSRD 36499
17-03-17 20:55:14.418 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:14.418 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:14.418 -07 000000459 INF: FPGA: Recv ZSGSRD 36496
17-03-17 20:55:14.428 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:14.428 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:14.428 -07 000000462 INF: FPGA: Recv ZSGSRD 36492
17-03-17 20:55:14.438 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:14.438 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:14.438 -07 000000462 INF: FPGA: Recv ZSGSRD 36491
17-03-17 20:55:14.448 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:14.448 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:14.448 -07 000000462 INF: FPGA: Recv ZSGSRD 36497
17-03-17 20:55:14.458 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:14.458 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:14.458 -07 000000462 INF: FPGA: Recv ZSGSRD 36489
17-03-17 20:55:14.468 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:14.468 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:14.468 -07 000000462 INF: FPGA: Recv ZSGSRD 36486
17-03-17 20:55:14.478 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:14.478 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:14.478 -07 000000462 INF: FPGA: Recv ZSGSRD 36493
17-03-17 20:55:14.488 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:14.488 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:14.488 -07 000000462 INF: FPGA: Recv ZSGSRD 36493
17-03-17 20:55:14.498 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:14.498 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:14.498 -07 000000462 INF: FPGA: Recv ZPIEZORD 32764
17-03-17 20:55:14.508 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:14.508 -07 000000448 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.825 V. Piezo Error = -8.3 V.
17-03-17 20:55:14.508 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36492 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36492 (-173.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36486 (-173.8 uncal um), Max = 36499 (-173.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:55:14.508 -07 000000448 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36492, posNoise = 7, negNoise = 6
17-03-17 20:55:14.508 -07 000000448 INF: Z Motor: After move to -0.174749, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:14.508 -07 000000448 INF: Z Motor: Settle wait time = 1447 ms, measure time = 104 ms (allowed 150 ms), total time = 1551 ms
17-03-17 20:55:14.508 -07 000000448 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:55:14.558 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 20:55:14.558 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:55:14.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:14.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:14.558 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:14.558 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:55:14.558 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:14.558 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:14.558 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:14.558 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:55:14.568 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:55:14.568 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:55:14.578 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:55:14.578 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:55:14.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:55:14.628 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:55:14.828 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:55:14.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:55:14.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:55:14.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:55:14.868 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:55:14.868 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 20:55:14.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 20:55:14.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 20:55:14.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:14.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:55:14.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 20:55:14.968 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:14.968 -07 000000433 INF: Autofocus start
17-03-17 20:55:14.968 -07 000000433 INF: MeasureProfile start
17-03-17 20:55:14.968 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:14.978 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:55:14.978 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:55:14.978 -07 000000433 INF: MeasureProfile done
17-03-17 20:55:14.978 -07 000000433 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:55:14.978 -07 000000433 INF: Autofocus finished
17-03-17 20:55:15.178 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:55:15.178 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:55:15.178 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.174755701488276. ----------
17-03-17 20:55:15.178 -07 000000610 INF: Cycle	44	Tile	14	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:55:15.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36707, sync = True, waitForSettling = True)
17-03-17 20:55:15.188 -07 000000610 INF: Z Motor: Moving to -0.168034 mm, started at -0.174756 mm, distance = 6.72 um
17-03-17 20:55:15.188 -07 000000610 INF: FPGA: Xmit ZDACW 36707\n [Z Motor]
17-03-17 20:55:15.188 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:55:15.198 -07 000000610 INF: FPGA: 'ZDACW 36707' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:15.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:15.198 -07 000000433 INF: FPGA: Recv ZDACR 36707
17-03-17 20:55:15.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:15.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:55:15.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:15.358 -07 000000448 INF: FPGA: Recv ZSGSRD 35449
17-03-17 20:55:15.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:15.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:15.368 -07 000000448 INF: FPGA: Recv ZSGSRD 35451
17-03-17 20:55:15.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:15.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:15.378 -07 000000433 INF: FPGA: Recv ZSGSRD 35449
17-03-17 20:55:15.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:15.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:15.388 -07 000000433 INF: FPGA: Recv ZSGSRD 35447
17-03-17 20:55:15.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:15.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:15.398 -07 000000433 INF: FPGA: Recv ZSGSRD 35451
17-03-17 20:55:15.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:15.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:15.408 -07 000000433 INF: FPGA: Recv ZSGSRD 35448
17-03-17 20:55:15.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:15.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:15.418 -07 000000433 INF: FPGA: Recv ZSGSRD 35447
17-03-17 20:55:15.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:15.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:15.428 -07 000000459 INF: FPGA: Recv ZSGSRD 35448
17-03-17 20:55:15.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:15.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:15.438 -07 000000459 INF: FPGA: Recv ZSGSRD 35452
17-03-17 20:55:15.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:15.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:15.448 -07 000000433 INF: FPGA: Recv ZSGSRD 35446
17-03-17 20:55:15.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:15.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:15.458 -07 000000448 INF: FPGA: Recv ZPIEZORD 31441
17-03-17 20:55:15.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:15.468 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -8.8 V.
17-03-17 20:55:15.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35449 (-167.2 uncal um), Error = 0.8 uncal um, Median = 35448 (-167.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35446 (-167.2 uncal um), Max = 35452 (-167.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:55:15.468 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35449, posNoise = 3, negNoise = 3
17-03-17 20:55:15.468 -07 000000610 INF: Z Motor: After move to -0.168034, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:15.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:55:15.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:15.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:15.468 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:15.468 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:15.468 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:55:15.468 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:15.468 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:55:15.468 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:55:15.468 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:55:15.468 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:55:15.468 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:55:15.468 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:55:15.468 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:55:15.468 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:55:15.478 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:55:15.478 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:55:15.488 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 20:55:15.488 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:55:15.488 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:55:15.488 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:55:15.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 36883 150\n [Camera]
17-03-17 20:55:15.688 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:55:16.108 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:55:16.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:55:16.108 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:16.108 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:16.108 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:55:16.118 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:55:16.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:55:16.118 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:16.118 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:16.118 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:55:16.298 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36883 807
17-03-17 20:55:16.448 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:55:16.488 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:55:16.488 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:55:16.488 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:16.498 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:55:16.498 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:55:16.498 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:16.498 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:16.498 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:55:16.498 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:16.508 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:55:16.658 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:55:16.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:55:16.658 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:16.768 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:55:16.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:55:16.768 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:16.778 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:16.778 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:16.778 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:55:16.778 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:55:16.828 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:55:16.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:55:16.848 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-17 20:55:16.848 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:55:16.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 36883 150' command took 4 ms to send, 1353 ms to get response, and 1359 ms overall
17-03-17 20:55:16.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:55:16.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.168055248224419. ------
17-03-17 20:55:16.848 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:16.848 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17443 mm
17-03-17 20:55:16.848 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:55:16.858 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:16.858 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:55:16.858 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:55:16.858 -07 000000433 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 20:55:16.858 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:16.858 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 38104, sync = True, waitForSettling = False)
17-03-17 20:55:16.858 -07 000000541 INF: Z Motor: Moving to -0.174429 mm, started at -0.168055 mm, distance = -6.37 um
17-03-17 20:55:16.858 -07 000000424 INF: FPGA: Recv YRDPOS 144771
17-03-17 20:55:16.868 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:55:16.868 -07 000000433 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:16.868 -07 000000433 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:55:16.868 -07 000000433 INF: Y Motor: Moving 1350 steps-28
17-03-17 20:55:16.868 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:55:16.878 -07 000000541 INF: FPGA: Xmit ZDACW 38104\n [Z Motor]
17-03-17 20:55:16.878 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:55:16.888 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:55:16.888 -07 000000541 INF: FPGA: 'ZDACW 38104' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:55:16.898 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:16.898 -07 000000415 INF: FPGA: Recv ZDACR 38104
17-03-17 20:55:16.908 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:55:16.908 -07 000000541 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 20:55:17.068 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:55:17.068 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 195 ms to get response, and 213 ms overall
17-03-17 20:55:17.148 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:55:17.148 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:55:17.148 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:17.148 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:55:17.148 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:55:17.148 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:17.158 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:17.158 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:17.158 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 500 ms.
17-03-17 20:55:17.158 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 20:55:17.258 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 20:55:17.258 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:55:17.318 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:17.318 -07 000000541 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:55:17.328 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 20:55:17.328 -07 000000433 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:17.328 -07 000000433 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:55:17.328 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 20:55:17.668 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.015368,
17-03-17 20:55:18.278 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:18.278 -07 000000448 INF: FPGA: Recv YRDPOS 146471
17-03-17 20:55:18.288 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:18.288 -07 000000433 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:18.308 -07 000000433 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:55:18.308 -07 000000433 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:55:18.308 -07 000000433 INF: Y Motor: Moved to 71.5190 after 1451 ms (table move)
17-03-17 20:55:18.308 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174429 mm (DAC = 38104)
17-03-17 20:55:18.308 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:18.308 -07 000000433 INF: FPGA: Recv ZSGSRD 36436
17-03-17 20:55:18.318 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:55:18.318 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:18.318 -07 000000433 INF: FPGA: Recv ZSGSRD 36445
17-03-17 20:55:18.328 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:18.328 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:18.328 -07 000000424 INF: FPGA: Recv ZSGSRD 36447
17-03-17 20:55:18.338 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:18.338 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:18.338 -07 000000424 INF: FPGA: Recv ZSGSRD 36448
17-03-17 20:55:18.348 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:18.348 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:18.348 -07 000000459 INF: FPGA: Recv ZSGSRD 36443
17-03-17 20:55:18.358 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:18.358 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:18.358 -07 000000459 INF: FPGA: Recv ZSGSRD 36439
17-03-17 20:55:18.368 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:18.368 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:18.368 -07 000000459 INF: FPGA: Recv ZSGSRD 36438
17-03-17 20:55:18.378 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:18.378 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:18.378 -07 000000459 INF: FPGA: Recv ZSGSRD 36442
17-03-17 20:55:18.388 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:18.388 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:18.388 -07 000000459 INF: FPGA: Recv ZSGSRD 36442
17-03-17 20:55:18.398 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:18.398 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:18.398 -07 000000459 INF: FPGA: Recv ZSGSRD 36441
17-03-17 20:55:18.408 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:18.408 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:18.408 -07 000000459 INF: FPGA: Recv ZPIEZORD 32741
17-03-17 20:55:18.418 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:18.418 -07 000000608 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.814 V. Piezo Error = -8.2 V.
17-03-17 20:55:18.418 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36442 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36442 (-173.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36436 (-173.5 uncal um), Max = 36448 (-173.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:55:18.418 -07 000000608 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36442, posNoise = 6, negNoise = 6
17-03-17 20:55:18.418 -07 000000608 INF: Z Motor: After move to -0.174429, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:18.418 -07 000000608 INF: Z Motor: Settle wait time = 1454 ms, measure time = 105 ms (allowed 150 ms), total time = 1559 ms
17-03-17 20:55:18.418 -07 000000608 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:55:18.468 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-17 20:55:18.468 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:55:18.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:18.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:18.468 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:18.468 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:18.468 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:55:18.468 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:18.468 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:18.468 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:55:18.478 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:55:18.478 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:55:18.488 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 20:55:18.488 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:55:18.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:55:18.538 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:55:18.738 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:55:18.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:55:18.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:55:18.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:55:18.778 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:55:18.778 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 20:55:18.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:55:18.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 20:55:18.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:18.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:55:18.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 20:55:18.878 -07 000000608 INF: Autofocus start
17-03-17 20:55:18.878 -07 000000608 INF: MeasureProfile start
17-03-17 20:55:18.878 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:18.888 -07 000000608 INF: MeasureProfile done
17-03-17 20:55:18.888 -07 000000608 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:55:18.888 -07 000000608 INF: Autofocus finished
17-03-17 20:55:18.888 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:18.888 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 9 ms to get response, and 16 ms overall
17-03-17 20:55:18.898 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:55:19.098 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:55:19.098 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 20:55:19.098 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.174434490881188. ----------
17-03-17 20:55:19.098 -07 000000610 INF: Cycle	44	Tile	15	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:55:19.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36619, sync = True, waitForSettling = True)
17-03-17 20:55:19.098 -07 000000610 INF: Z Motor: Moving to -0.167631 mm, started at -0.174434 mm, distance = 6.80 um
17-03-17 20:55:19.098 -07 000000610 INF: FPGA: Xmit ZDACW 36619\n [Z Motor]
17-03-17 20:55:19.108 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 20:55:19.108 -07 000000610 INF: FPGA: 'ZDACW 36619' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 20:55:19.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:19.108 -07 000000459 INF: FPGA: Recv ZDACR 36619
17-03-17 20:55:19.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:55:19.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:55:19.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:19.268 -07 000000608 INF: FPGA: Recv ZSGSRD 35386
17-03-17 20:55:19.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:19.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:19.278 -07 000000608 INF: FPGA: Recv ZSGSRD 35388
17-03-17 20:55:19.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:19.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:19.288 -07 000000459 INF: FPGA: Recv ZSGSRD 35382
17-03-17 20:55:19.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:19.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:19.298 -07 000000608 INF: FPGA: Recv ZSGSRD 35386
17-03-17 20:55:19.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:19.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:19.308 -07 000000608 INF: FPGA: Recv ZSGSRD 35385
17-03-17 20:55:19.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:19.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:19.318 -07 000000459 INF: FPGA: Recv ZSGSRD 35381
17-03-17 20:55:19.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:19.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:19.328 -07 000000429 INF: FPGA: Recv ZSGSRD 35383
17-03-17 20:55:19.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:19.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:19.338 -07 000000448 INF: FPGA: Recv ZSGSRD 35382
17-03-17 20:55:19.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:19.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:19.348 -07 000000382 INF: FPGA: Recv ZSGSRD 35389
17-03-17 20:55:19.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:19.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:19.358 -07 000000429 INF: FPGA: Recv ZSGSRD 35387
17-03-17 20:55:19.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:19.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:19.368 -07 000000608 INF: FPGA: Recv ZPIEZORD 31366
17-03-17 20:55:19.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:19.378 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.588 V. Piezo Error = -8.9 V.
17-03-17 20:55:19.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35385 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35386 (-166.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35381 (-166.7 uncal um), Max = 35389 (-166.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:55:19.378 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35385, posNoise = 4, negNoise = 4
17-03-17 20:55:19.378 -07 000000610 INF: Z Motor: After move to -0.167631, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:19.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 271 ms)
17-03-17 20:55:19.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:19.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:19.378 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:19.378 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:19.378 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:55:19.378 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:55:19.378 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:19.378 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:55:19.378 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:19.378 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:55:19.378 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:55:19.378 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:55:19.378 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:55:19.378 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:55:19.378 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:55:19.378 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:55:19.388 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:55:19.388 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:55:19.388 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:55:19.388 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:55:19.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 36796 150\n [Camera]
17-03-17 20:55:19.598 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:55:20.018 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:55:20.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:55:20.018 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:20.018 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:20.018 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:55:20.018 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:55:20.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:55:20.018 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:20.018 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:20.018 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:55:20.218 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36796 807
17-03-17 20:55:20.358 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:55:20.398 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:55:20.398 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:55:20.398 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:20.398 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:55:20.398 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:55:20.398 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:20.408 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:20.408 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:55:20.408 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:20.408 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:55:20.568 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:55:20.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:55:20.568 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:20.678 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:55:20.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:55:20.678 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:20.688 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:20.688 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:20.688 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:55:20.688 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:55:20.758 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-17 20:55:20.758 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:55:20.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 36796 150' command took 2 ms to send, 1353 ms to get response, and 1360 ms overall
17-03-17 20:55:20.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:55:20.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167644098647346. ------
17-03-17 20:55:20.758 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:20.758 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17384 mm
17-03-17 20:55:20.768 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:55:20.768 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:55:20.768 -07 000000512 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 20:55:20.768 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 37975, sync = True, waitForSettling = False)
17-03-17 20:55:20.768 -07 000000429 INF: Z Motor: Moving to -0.173838 mm, started at -0.167644 mm, distance = -6.19 um
17-03-17 20:55:20.768 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:20.778 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:20.778 -07 000000429 INF: FPGA: Xmit ZDACW 37975\n [Z Motor]
17-03-17 20:55:20.778 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 20:55:20.788 -07 000000429 INF: FPGA: 'ZDACW 37975' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:55:20.788 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:20.788 -07 000000501 INF: FPGA: Recv YRDPOS 146472
17-03-17 20:55:20.798 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:55:20.798 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:55:20.798 -07 000000512 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:20.798 -07 000000512 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:55:20.798 -07 000000512 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:55:20.808 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:20.808 -07 000000608 INF: FPGA: Recv ZDACR 37975
17-03-17 20:55:20.818 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:55:20.818 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:55:20.818 -07 000000429 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 20:55:20.998 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:55:20.998 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:55:21.078 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 20:55:21.078 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 20:55:21.078 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:21.078 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:21.078 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 20:55:21.078 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:55:21.078 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:21.078 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:21.078 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 20:55:21.088 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:55:21.188 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:55:21.188 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 20:55:21.228 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:21.228 -07 000000448 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:55:21.238 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:55:21.238 -07 000000512 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:21.238 -07 000000512 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 20:55:21.238 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.157 mm/sec
17-03-17 20:55:21.828 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:55:21.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:55:22.188 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:22.188 -07 000000475 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:55:22.198 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:22.198 -07 000000512 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:22.218 -07 000000512 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:55:22.218 -07 000000512 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:55:22.218 -07 000000512 INF: Y Motor: Moved to 72.3496 after 1451 ms (table move)
17-03-17 20:55:22.218 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173838 mm (DAC = 37975)
17-03-17 20:55:22.218 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:22.218 -07 000000458 INF: FPGA: Recv ZSGSRD 36351
17-03-17 20:55:22.228 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:55:22.228 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:22.228 -07 000000458 INF: FPGA: Recv ZSGSRD 36354
17-03-17 20:55:22.238 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:22.238 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:22.238 -07 000000608 INF: FPGA: Recv ZSGSRD 36347
17-03-17 20:55:22.248 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:22.248 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:22.248 -07 000000458 INF: FPGA: Recv ZSGSRD 36354
17-03-17 20:55:22.258 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:22.258 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:22.258 -07 000000512 INF: FPGA: Recv ZSGSRD 36354
17-03-17 20:55:22.268 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:22.268 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:22.268 -07 000000382 INF: FPGA: Recv ZSGSRD 36353
17-03-17 20:55:22.278 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:22.278 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:22.868 -07 000000462 INF: FPGA: Recv ZSGSRD 36347
17-03-17 20:55:22.868 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 580 ms to get response, and 590 ms overall
17-03-17 20:55:22.868 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:22.868 -07 000000382 INF: FPGA: Recv ZSGSRD 36352
17-03-17 20:55:22.878 -07 000000541 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:55:22.878 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:22.878 -07 000000475 INF: FPGA: Recv ZSGSRD 36349
17-03-17 20:55:22.888 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:22.888 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:22.888 -07 000000382 INF: FPGA: Recv ZSGSRD 36352
17-03-17 20:55:22.898 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:22.898 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:22.898 -07 000000462 INF: FPGA: Recv ZPIEZORD 32638
17-03-17 20:55:22.908 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:22.908 -07 000000541 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.795 V. Piezo Error = -8.2 V.
17-03-17 20:55:22.908 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.8 um, Read 10 ADC samples: Avg = 36351 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36352 (-173.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36347 (-172.9 uncal um), Max = 36354 (-173.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:55:22.908 -07 000000541 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36351, posNoise = 3, negNoise = 4
17-03-17 20:55:22.908 -07 000000541 INF: Z Motor: After move to -0.173838, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:22.908 -07 000000541 INF: Z Motor: Settle wait time = 1453 ms, measure time = 684 ms (allowed 150 ms), total time = 2137 ms
17-03-17 20:55:22.908 -07 000000541 INF: Z Motor: Warning: Actual position measuring time = 684 ms, longer than max expected time of 150 ms
17-03-17 20:55:22.908 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2141 ms
17-03-17 20:55:22.908 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:55:22.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:22.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:22.908 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:22.908 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:22.908 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:55:22.908 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:22.908 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:22.908 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:55:22.918 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:55:22.918 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:55:22.918 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:55:22.918 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:55:22.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:55:22.968 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:55:23.168 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:55:23.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:55:23.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:55:23.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:55:23.178 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.001704,
17-03-17 20:55:23.208 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:55:23.208 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 20:55:23.208 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:55:23.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:55:23.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:23.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:55:23.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:55:23.308 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:23.308 -07 000000458 INF: Autofocus start
17-03-17 20:55:23.308 -07 000000458 INF: MeasureProfile start
17-03-17 20:55:23.318 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:23.318 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:55:23.318 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:55:23.328 -07 000000458 INF: MeasureProfile done
17-03-17 20:55:23.328 -07 000000458 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:55:23.328 -07 000000458 INF: Autofocus finished
17-03-17 20:55:23.518 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:55:23.518 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:55:23.518 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173849887576288. ----------
17-03-17 20:55:23.518 -07 000000610 INF: Cycle	44	Tile	16	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:55:23.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36490, sync = True, waitForSettling = True)
17-03-17 20:55:23.528 -07 000000610 INF: Z Motor: Moving to -0.167041 mm, started at -0.173850 mm, distance = 6.81 um
17-03-17 20:55:23.528 -07 000000610 INF: FPGA: Xmit ZDACW 36490\n [Z Motor]
17-03-17 20:55:23.528 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:55:23.538 -07 000000610 INF: FPGA: 'ZDACW 36490' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:55:23.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:23.538 -07 000000382 INF: FPGA: Recv ZDACR 36490
17-03-17 20:55:23.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:23.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:55:23.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:23.698 -07 000000541 INF: FPGA: Recv ZSGSRD 35295
17-03-17 20:55:23.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:23.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:23.708 -07 000000429 INF: FPGA: Recv ZSGSRD 35293
17-03-17 20:55:23.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:23.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:23.718 -07 000000382 INF: FPGA: Recv ZSGSRD 35288
17-03-17 20:55:23.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:23.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:23.728 -07 000000608 INF: FPGA: Recv ZSGSRD 35288
17-03-17 20:55:23.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:23.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:23.738 -07 000000501 INF: FPGA: Recv ZSGSRD 35298
17-03-17 20:55:23.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:23.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:23.748 -07 000000475 INF: FPGA: Recv ZSGSRD 35299
17-03-17 20:55:23.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:23.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:23.758 -07 000000462 INF: FPGA: Recv ZSGSRD 35294
17-03-17 20:55:23.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:23.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:23.768 -07 000000458 INF: FPGA: Recv ZSGSRD 35294
17-03-17 20:55:23.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:23.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:23.778 -07 000000501 INF: FPGA: Recv ZSGSRD 35289
17-03-17 20:55:23.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:23.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:23.788 -07 000000475 INF: FPGA: Recv ZSGSRD 35288
17-03-17 20:55:23.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:23.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:23.798 -07 000000382 INF: FPGA: Recv ZPIEZORD 31236
17-03-17 20:55:23.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:23.808 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.568 V. Piezo Error = -9.0 V.
17-03-17 20:55:23.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35293 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35294 (-166.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35288 (-166.2 uncal um), Max = 35299 (-166.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:55:23.808 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35293, posNoise = 6, negNoise = 5
17-03-17 20:55:23.808 -07 000000610 INF: Z Motor: After move to -0.167041, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:23.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 20:55:23.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:23.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:23.808 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:23.808 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:23.808 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:55:23.808 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:23.808 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:55:23.808 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:55:23.808 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:23.808 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:55:23.808 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:55:23.808 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:55:23.818 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:55:23.818 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:55:23.818 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:55:23.818 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:55:23.828 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:55:23.828 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:55:23.828 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:55:23.828 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:55:23.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 36667 150\n [Camera]
17-03-17 20:55:24.028 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:55:24.448 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:55:24.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:55:24.448 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:24.448 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:24.448 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:55:24.448 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:55:24.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:55:24.448 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:24.448 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:24.448 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:55:24.638 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36667 807
17-03-17 20:55:24.788 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:55:24.848 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:55:24.848 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:55:24.848 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:24.848 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:24.848 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:55:24.848 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:55:24.848 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:55:24.848 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:24.858 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:24.858 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:55:24.998 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:55:24.998 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:55:24.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:55:24.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:55:24.998 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:24.998 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:25.008 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:25.008 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:55:25.008 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:25.008 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:55:25.188 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1355
17-03-17 20:55:25.188 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:55:25.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 36667 150' command took 2 ms to send, 1354 ms to get response, and 1362 ms overall
17-03-17 20:55:25.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:55:25.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.167053071130304. ------
17-03-17 20:55:25.188 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:25.188 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17360 mm
17-03-17 20:55:25.198 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:55:25.198 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:25.198 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:55:25.198 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:55:25.198 -07 000000475 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 20:55:25.198 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:55:25.198 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 37923, sync = True, waitForSettling = False)
17-03-17 20:55:25.198 -07 000000501 INF: Z Motor: Moving to -0.173600 mm, started at -0.167053 mm, distance = -6.55 um
17-03-17 20:55:25.208 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:25.208 -07 000000458 INF: FPGA: Recv YRDPOS 148173
17-03-17 20:55:25.218 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:55:25.218 -07 000000475 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:25.218 -07 000000501 INF: FPGA: Xmit ZDACW 37923\n [Z Motor]
17-03-17 20:55:25.218 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:55:25.218 -07 000000475 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:55:25.218 -07 000000475 INF: Y Motor: Moving 1348 steps-27
17-03-17 20:55:25.228 -07 000000501 INF: FPGA: 'ZDACW 37923' command took 2 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:55:25.228 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:55:25.238 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:25.238 -07 000000608 INF: FPGA: Recv ZDACR 37923
17-03-17 20:55:25.248 -07 000000501 INF: FPGA: 'ZDACR' command took 6 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:55:25.248 -07 000000501 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 20:55:25.398 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:55:25.398 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 20:55:25.408 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 20:55:25.408 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:55:25.408 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:25.408 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:55:25.408 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:55:25.408 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:25.408 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:25.408 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:25.408 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:55:25.418 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 20:55:25.598 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 20:55:25.598 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 20:55:25.638 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:25.638 -07 000000429 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:55:25.648 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:55:25.648 -07 000000475 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:25.648 -07 000000475 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 20:55:25.648 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.843 mm, average velocity = 2.213 mm/sec
17-03-17 20:55:26.598 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:26.598 -07 000000458 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:55:26.608 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:26.608 -07 000000475 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:26.628 -07 000000475 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:55:26.628 -07 000000475 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:55:26.628 -07 000000475 INF: Y Motor: Moved to 73.1763 after 1430 ms (table move)
17-03-17 20:55:26.628 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173600 mm (DAC = 37923)
17-03-17 20:55:26.628 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:26.628 -07 000000429 INF: FPGA: Recv ZSGSRD 36319
17-03-17 20:55:26.638 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:55:26.638 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:26.638 -07 000000501 INF: FPGA: Recv ZSGSRD 36312
17-03-17 20:55:26.648 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:26.648 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:26.648 -07 000000458 INF: FPGA: Recv ZSGSRD 36313
17-03-17 20:55:26.658 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:26.658 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:26.658 -07 000000475 INF: FPGA: Recv ZSGSRD 36319
17-03-17 20:55:26.668 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:26.668 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:26.668 -07 000000382 INF: FPGA: Recv ZSGSRD 36322
17-03-17 20:55:26.678 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:26.678 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:26.678 -07 000000541 INF: FPGA: Recv ZSGSRD 36319
17-03-17 20:55:26.688 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:26.688 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:26.688 -07 000000458 INF: FPGA: Recv ZSGSRD 36313
17-03-17 20:55:26.698 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:26.698 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:26.698 -07 000000502 INF: FPGA: Recv ZSGSRD 36306
17-03-17 20:55:26.708 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:26.708 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:26.708 -07 000000382 INF: FPGA: Recv ZSGSRD 36316
17-03-17 20:55:26.718 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:26.718 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:26.718 -07 000000458 INF: FPGA: Recv ZSGSRD 36310
17-03-17 20:55:26.728 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:26.728 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:26.728 -07 000000382 INF: FPGA: Recv ZPIEZORD 32594
17-03-17 20:55:26.738 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:26.738 -07 000000462 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.787 V. Piezo Error = -8.2 V.
17-03-17 20:55:26.738 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36315 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36314 (-172.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36306 (-172.7 uncal um), Max = 36322 (-172.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:55:26.738 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36315, posNoise = 7, negNoise = 9
17-03-17 20:55:26.738 -07 000000462 INF: Z Motor: After move to -0.173600, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:26.738 -07 000000462 INF: Z Motor: Settle wait time = 1433 ms, measure time = 103 ms (allowed 150 ms), total time = 1536 ms
17-03-17 20:55:26.738 -07 000000462 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:55:26.788 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 20:55:26.788 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:55:26.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:26.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:26.788 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:26.788 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:26.788 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:55:26.788 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:26.788 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:26.788 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:55:26.798 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:55:26.798 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:55:26.798 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:55:26.798 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:55:26.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:55:26.828 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:55:26.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:55:26.848 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:55:27.048 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:55:27.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:55:27.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:55:27.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:55:27.088 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:55:27.088 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 20:55:27.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:55:27.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:55:27.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:27.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:55:27.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:55:27.188 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:27.188 -07 000000541 INF: Autofocus start
17-03-17 20:55:27.188 -07 000000541 INF: MeasureProfile start
17-03-17 20:55:27.188 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:27.198 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:55:27.198 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:55:27.198 -07 000000541 INF: MeasureProfile done
17-03-17 20:55:27.198 -07 000000541 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 20:55:27.198 -07 000000541 INF: Autofocus finished
17-03-17 20:55:27.398 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:55:27.398 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:55:27.398 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.173618615939184. ----------
17-03-17 20:55:27.408 -07 000000610 INF: Cycle	44	Tile	17	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:55:27.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36403, sync = True, waitForSettling = True)
17-03-17 20:55:27.408 -07 000000610 INF: Z Motor: Moving to -0.166642 mm, started at -0.173619 mm, distance = 6.98 um
17-03-17 20:55:27.408 -07 000000610 INF: FPGA: Xmit ZDACW 36403\n [Z Motor]
17-03-17 20:55:27.408 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:55:27.418 -07 000000610 INF: FPGA: 'ZDACW 36403' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:55:27.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:27.418 -07 000000502 INF: FPGA: Recv ZDACR 36403
17-03-17 20:55:27.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:27.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:55:27.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:27.578 -07 000000462 INF: FPGA: Recv ZSGSRD 35232
17-03-17 20:55:27.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:27.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:27.588 -07 000000501 INF: FPGA: Recv ZSGSRD 35229
17-03-17 20:55:27.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:27.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:27.598 -07 000000462 INF: FPGA: Recv ZSGSRD 35233
17-03-17 20:55:27.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:27.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:27.608 -07 000000608 INF: FPGA: Recv ZSGSRD 35230
17-03-17 20:55:27.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:27.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:27.618 -07 000000462 INF: FPGA: Recv ZSGSRD 35226
17-03-17 20:55:27.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:27.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:27.628 -07 000000382 INF: FPGA: Recv ZSGSRD 35237
17-03-17 20:55:27.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:27.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:27.638 -07 000000501 INF: FPGA: Recv ZSGSRD 35235
17-03-17 20:55:27.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:55:27.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:27.648 -07 000000462 INF: FPGA: Recv ZSGSRD 35229
17-03-17 20:55:27.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:27.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:27.658 -07 000000501 INF: FPGA: Recv ZSGSRD 35227
17-03-17 20:55:27.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:27.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:27.668 -07 000000429 INF: FPGA: Recv ZSGSRD 35230
17-03-17 20:55:27.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:27.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:27.678 -07 000000502 INF: FPGA: Recv ZPIEZORD 31149
17-03-17 20:55:27.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:27.688 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.555 V. Piezo Error = -9.0 V.
17-03-17 20:55:27.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35231 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35230 (-165.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35226 (-165.8 uncal um), Max = 35237 (-165.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:55:27.688 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35231, posNoise = 6, negNoise = 5
17-03-17 20:55:27.688 -07 000000610 INF: Z Motor: After move to -0.166642, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:27.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:55:27.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:27.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:27.688 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:27.688 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:27.688 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:55:27.688 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:27.688 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:55:27.688 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:55:27.688 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:27.688 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:55:27.688 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:55:27.688 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:55:27.688 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:55:27.688 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:55:27.688 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:55:27.688 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:55:27.698 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:55:27.698 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:55:27.698 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:55:27.698 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:55:27.708 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 36580 150\n [Camera]
17-03-17 20:55:27.908 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:55:28.328 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:55:28.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:55:28.328 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:28.328 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:28.328 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:55:28.328 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:55:28.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:55:28.328 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:28.328 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:28.328 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:55:28.518 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36580 807
17-03-17 20:55:28.538 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.996267,
17-03-17 20:55:28.668 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:55:28.718 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:55:28.718 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:55:28.718 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:28.718 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 20:55:28.718 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:55:28.718 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:28.718 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:28.718 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:28.718 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:55:28.728 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:55:28.868 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:55:28.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:55:28.878 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:28.978 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:55:28.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:55:28.978 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:28.988 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:28.988 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:55:28.988 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:28.988 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:55:29.068 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-17 20:55:29.068 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:55:29.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 36580 150' command took 2 ms to send, 1351 ms to get response, and 1360 ms overall
17-03-17 20:55:29.068 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:55:29.068 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166654769977515. ------
17-03-17 20:55:29.068 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:29.068 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17305 mm
17-03-17 20:55:29.068 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:55:29.078 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:29.078 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:55:29.078 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:55:29.078 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:55:29.078 -07 000000475 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 20:55:29.078 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 37803, sync = True, waitForSettling = False)
17-03-17 20:55:29.078 -07 000000541 INF: Z Motor: Moving to -0.173051 mm, started at -0.166655 mm, distance = -6.40 um
17-03-17 20:55:29.088 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:29.088 -07 000000502 INF: FPGA: Recv YRDPOS 149865
17-03-17 20:55:29.098 -07 000000541 INF: FPGA: Xmit ZDACW 37803\n [Z Motor]
17-03-17 20:55:29.098 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:55:29.098 -07 000000475 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:29.098 -07 000000475 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:55:29.098 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:55:29.098 -07 000000475 INF: Y Motor: Moving 1354 steps-33
17-03-17 20:55:29.108 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:55:29.108 -07 000000541 INF: FPGA: 'ZDACW 37803' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:55:29.118 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:29.118 -07 000000448 INF: FPGA: Recv ZDACR 37803
17-03-17 20:55:29.128 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:55:29.128 -07 000000541 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 20:55:29.278 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:55:29.278 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:55:29.388 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 20:55:29.388 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 20:55:29.388 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:29.388 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 20:55:29.388 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:55:29.388 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:29.388 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:29.388 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-17 20:55:29.388 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:29.398 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:55:29.478 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 20:55:29.478 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 20:55:29.508 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:29.518 -07 000000501 INF: FPGA: Recv YRDPOS 151568
17-03-17 20:55:29.518 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 20:55:29.518 -07 000000475 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:29.518 -07 000000475 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 20:55:29.518 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.846 mm, average velocity = 2.198 mm/sec
17-03-17 20:55:30.468 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:30.468 -07 000000608 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:55:30.478 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:30.478 -07 000000475 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:30.488 -07 000000475 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:55:30.488 -07 000000475 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:55:30.488 -07 000000475 INF: Y Motor: Moved to 74.0083 after 1415 ms (table move)
17-03-17 20:55:30.498 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173051 mm (DAC = 37803)
17-03-17 20:55:30.498 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:30.498 -07 000000541 INF: FPGA: Recv ZSGSRD 36228
17-03-17 20:55:30.508 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:55:30.508 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:30.508 -07 000000475 INF: FPGA: Recv ZSGSRD 36227
17-03-17 20:55:30.518 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:30.518 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:30.518 -07 000000541 INF: FPGA: Recv ZSGSRD 36226
17-03-17 20:55:30.528 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:30.528 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:30.528 -07 000000608 INF: FPGA: Recv ZSGSRD 36225
17-03-17 20:55:30.538 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:30.538 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:30.538 -07 000000541 INF: FPGA: Recv ZSGSRD 36235
17-03-17 20:55:30.548 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:30.548 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:30.548 -07 000000448 INF: FPGA: Recv ZSGSRD 36237
17-03-17 20:55:30.558 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:30.558 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:30.558 -07 000000501 INF: FPGA: Recv ZSGSRD 36233
17-03-17 20:55:30.568 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:30.568 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:30.568 -07 000000608 INF: FPGA: Recv ZSGSRD 36228
17-03-17 20:55:30.578 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:30.578 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:30.578 -07 000000501 INF: FPGA: Recv ZSGSRD 36224
17-03-17 20:55:30.588 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:30.588 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:30.588 -07 000000462 INF: FPGA: Recv ZSGSRD 36232
17-03-17 20:55:30.598 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:30.598 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:30.598 -07 000000501 INF: FPGA: Recv ZPIEZORD 32496
17-03-17 20:55:30.608 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:30.608 -07 000000458 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.768 V. Piezo Error = -8.3 V.
17-03-17 20:55:30.608 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36230 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36228 (-172.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36224 (-172.2 uncal um), Max = 36237 (-172.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:55:30.608 -07 000000458 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36230, posNoise = 7, negNoise = 6
17-03-17 20:55:30.608 -07 000000458 INF: Z Motor: After move to -0.173051, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:30.608 -07 000000458 INF: Z Motor: Settle wait time = 1418 ms, measure time = 109 ms (allowed 150 ms), total time = 1527 ms
17-03-17 20:55:30.608 -07 000000458 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 20:55:30.658 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-17 20:55:30.658 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:55:30.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:30.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:30.658 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:30.658 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:30.658 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:55:30.658 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:30.668 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:55:30.668 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:55:30.668 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:55:30.668 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:55:30.668 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:55:30.668 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:55:30.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:55:30.718 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:55:30.918 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:55:30.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:55:30.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:55:30.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:55:30.958 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:55:30.958 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 20:55:30.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:55:31.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:55:31.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:31.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:55:31.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:55:31.058 -07 000000458 INF: Autofocus start
17-03-17 20:55:31.058 -07 000000458 INF: MeasureProfile start
17-03-17 20:55:31.058 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:31.058 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:31.068 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:55:31.068 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:55:31.068 -07 000000458 INF: MeasureProfile done
17-03-17 20:55:31.068 -07 000000458 INF: X=32  Z correction [um]=0.09220707
17-03-17 20:55:31.068 -07 000000458 INF: Autofocus finished
17-03-17 20:55:31.268 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:55:31.268 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:55:31.268 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.173072557907134. ----------
17-03-17 20:55:31.278 -07 000000610 INF: Cycle	44	Tile	18	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:55:31.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36336, sync = True, waitForSettling = True)
17-03-17 20:55:31.278 -07 000000610 INF: Z Motor: Moving to -0.166336 mm, started at -0.173073 mm, distance = 6.74 um
17-03-17 20:55:31.278 -07 000000610 INF: FPGA: Xmit ZDACW 36336\n [Z Motor]
17-03-17 20:55:31.278 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:55:31.288 -07 000000610 INF: FPGA: 'ZDACW 36336' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:55:31.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:31.288 -07 000000462 INF: FPGA: Recv ZDACR 36336
17-03-17 20:55:31.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:31.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:55:31.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:31.448 -07 000000541 INF: FPGA: Recv ZSGSRD 35178
17-03-17 20:55:31.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:31.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:31.458 -07 000000501 INF: FPGA: Recv ZSGSRD 35184
17-03-17 20:55:31.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:31.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:31.468 -07 000000462 INF: FPGA: Recv ZSGSRD 35189
17-03-17 20:55:31.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:31.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:31.478 -07 000000501 INF: FPGA: Recv ZSGSRD 35185
17-03-17 20:55:31.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:31.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:31.488 -07 000000448 INF: FPGA: Recv ZSGSRD 35180
17-03-17 20:55:31.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:31.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:31.498 -07 000000608 INF: FPGA: Recv ZSGSRD 35185
17-03-17 20:55:31.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:31.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:31.508 -07 000000501 INF: FPGA: Recv ZSGSRD 35182
17-03-17 20:55:31.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:31.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:31.518 -07 000000541 INF: FPGA: Recv ZSGSRD 35185
17-03-17 20:55:31.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:31.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:31.528 -07 000000448 INF: FPGA: Recv ZSGSRD 35186
17-03-17 20:55:31.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:31.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:31.538 -07 000000458 INF: FPGA: Recv ZSGSRD 35181
17-03-17 20:55:31.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:31.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:31.548 -07 000000541 INF: FPGA: Recv ZPIEZORD 31083
17-03-17 20:55:31.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:31.558 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.545 V. Piezo Error = -9.0 V.
17-03-17 20:55:31.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35184 (-165.5 uncal um), Error = 0.8 uncal um, Median = 35184 (-165.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35178 (-165.4 uncal um), Max = 35189 (-165.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:55:31.558 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35184, posNoise = 5, negNoise = 6
17-03-17 20:55:31.558 -07 000000610 INF: Z Motor: After move to -0.166336, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:31.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:55:31.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:31.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:31.558 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:31.558 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:31.558 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:55:31.558 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:31.558 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:55:31.558 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:55:31.558 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:31.558 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:55:31.558 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:55:31.558 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:55:31.568 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:55:31.568 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:55:31.568 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:55:31.568 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:55:31.578 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:55:31.578 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:55:31.578 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:55:31.578 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 20:55:31.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 36513 150\n [Camera]
17-03-17 20:55:31.778 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:55:31.828 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:55:31.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:55:32.208 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:55:32.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:55:32.208 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:32.208 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:32.208 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:55:32.208 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:55:32.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:55:32.208 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:32.208 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:32.208 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:55:32.398 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36513 807
17-03-17 20:55:32.548 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:55:32.578 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 20:55:32.578 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 20:55:32.578 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:32.588 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:32.588 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:55:32.588 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:55:32.588 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:32.588 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:32.588 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:55:32.588 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:55:32.748 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:55:32.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:55:32.748 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:32.858 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:55:32.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:55:32.858 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:32.868 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:32.868 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:32.868 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:55:32.868 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:55:32.938 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-17 20:55:32.938 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:55:32.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 36513 150' command took 3 ms to send, 1359 ms to get response, and 1363 ms overall
17-03-17 20:55:32.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 20:55:32.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.166352832006852. ------
17-03-17 20:55:32.948 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:32.948 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17267 mm
17-03-17 20:55:32.948 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:55:32.948 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:55:32.948 -07 000000541 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 20:55:32.948 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:32.948 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 37721, sync = True, waitForSettling = False)
17-03-17 20:55:32.948 -07 000000448 INF: Z Motor: Moving to -0.172676 mm, started at -0.166353 mm, distance = -6.32 um
17-03-17 20:55:32.958 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:55:32.958 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:32.958 -07 000000462 INF: FPGA: Recv YRDPOS 151569
17-03-17 20:55:32.968 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:55:32.968 -07 000000541 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:32.968 -07 000000541 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:55:32.968 -07 000000541 INF: Y Motor: Moving 1351 steps-30
17-03-17 20:55:32.968 -07 000000448 INF: FPGA: Xmit ZDACW 37721\n [Z Motor]
17-03-17 20:55:32.968 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:55:32.978 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:55:32.978 -07 000000448 INF: FPGA: 'ZDACW 37721' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:55:32.988 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:55:32.998 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:32.998 -07 000000576 INF: FPGA: Recv ZDACR 37721
17-03-17 20:55:33.008 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:55:33.008 -07 000000448 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 20:55:33.178 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:55:33.178 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:55:33.268 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:55:33.268 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:55:33.268 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:33.268 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:55:33.268 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:55:33.268 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:33.278 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:33.278 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:33.278 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 20:55:33.278 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 20:55:33.368 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 20:55:33.368 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 400 ms overall
17-03-17 20:55:33.388 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:33.388 -07 000000448 INF: FPGA: Recv YRDPOS 153256
17-03-17 20:55:33.398 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:55:33.398 -07 000000541 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:33.398 -07 000000541 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 20:55:33.398 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.844 mm, average velocity = 2.111 mm/sec
17-03-17 20:55:33.908 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.02213,
17-03-17 20:55:34.348 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:34.348 -07 000000576 INF: FPGA: Recv YRDPOS 153256
17-03-17 20:55:34.358 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:34.358 -07 000000541 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:34.368 -07 000000541 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:55:34.368 -07 000000541 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:55:34.368 -07 000000541 INF: Y Motor: Moved to 74.8320 after 1419 ms (table move)
17-03-17 20:55:34.368 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172676 mm (DAC = 37721)
17-03-17 20:55:34.378 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:34.378 -07 000000424 INF: FPGA: Recv ZSGSRD 36175
17-03-17 20:55:34.388 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:34.388 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:34.388 -07 000000458 INF: FPGA: Recv ZSGSRD 36164
17-03-17 20:55:34.398 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:34.398 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:34.398 -07 000000462 INF: FPGA: Recv ZSGSRD 36174
17-03-17 20:55:34.408 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:34.408 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:34.408 -07 000000459 INF: FPGA: Recv ZSGSRD 36172
17-03-17 20:55:34.418 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:34.418 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:34.418 -07 000000512 INF: FPGA: Recv ZSGSRD 36176
17-03-17 20:55:34.428 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:34.428 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:34.428 -07 000000458 INF: FPGA: Recv ZSGSRD 36165
17-03-17 20:55:34.438 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:34.438 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:34.438 -07 000000382 INF: FPGA: Recv ZSGSRD 36162
17-03-17 20:55:34.448 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:34.448 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:34.448 -07 000000512 INF: FPGA: Recv ZSGSRD 36172
17-03-17 20:55:34.458 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:34.458 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:34.458 -07 000000626 INF: FPGA: Recv ZSGSRD 36170
17-03-17 20:55:34.468 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:34.468 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:34.468 -07 000000608 INF: FPGA: Recv ZSGSRD 36169
17-03-17 20:55:34.478 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:34.478 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:34.478 -07 000000459 INF: FPGA: Recv ZPIEZORD 32396
17-03-17 20:55:34.488 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:34.488 -07 000000475 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.756 V. Piezo Error = -8.4 V.
17-03-17 20:55:34.488 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36170 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36171 (-171.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36162 (-171.8 uncal um), Max = 36176 (-171.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:55:34.488 -07 000000475 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36170, posNoise = 6, negNoise = 8
17-03-17 20:55:34.488 -07 000000475 INF: Z Motor: After move to -0.172676, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:34.488 -07 000000475 INF: Z Motor: Settle wait time = 1421 ms, measure time = 111 ms (allowed 150 ms), total time = 1532 ms
17-03-17 20:55:34.488 -07 000000475 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 20:55:34.528 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 20:55:34.528 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:55:34.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:34.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:34.528 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:34.528 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:34.528 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:55:34.528 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:34.528 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:34.528 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:55:34.538 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:55:34.538 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:55:34.548 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:55:34.548 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 20:55:34.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:55:34.598 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:55:34.798 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:55:34.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:55:34.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:55:34.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:55:34.838 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:55:34.838 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 20:55:34.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 20:55:34.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:55:34.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:34.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:55:34.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:55:34.938 -07 000000541 INF: Autofocus start
17-03-17 20:55:34.938 -07 000000541 INF: MeasureProfile start
17-03-17 20:55:34.938 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:34.948 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:34.948 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:55:34.948 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:55:34.958 -07 000000541 INF: MeasureProfile done
17-03-17 20:55:34.958 -07 000000541 INF: X=16  Z correction [um]=0.01042744
17-03-17 20:55:34.958 -07 000000541 INF: Autofocus finished
17-03-17 20:55:35.148 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:55:35.148 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:55:35.148 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.172687105178629. ----------
17-03-17 20:55:35.158 -07 000000610 INF: Cycle	44	Tile	19	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:55:35.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36236, sync = True, waitForSettling = True)
17-03-17 20:55:35.158 -07 000000610 INF: Z Motor: Moving to -0.165878 mm, started at -0.172687 mm, distance = 6.81 um
17-03-17 20:55:35.158 -07 000000610 INF: FPGA: Xmit ZDACW 36236\n [Z Motor]
17-03-17 20:55:35.158 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:55:35.168 -07 000000610 INF: FPGA: 'ZDACW 36236' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:55:35.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:35.168 -07 000000459 INF: FPGA: Recv ZDACR 36236
17-03-17 20:55:35.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:35.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:55:35.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:35.328 -07 000000608 INF: FPGA: Recv ZSGSRD 35104
17-03-17 20:55:35.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:35.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:35.338 -07 000000429 INF: FPGA: Recv ZSGSRD 35116
17-03-17 20:55:35.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:35.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:35.348 -07 000000475 INF: FPGA: Recv ZSGSRD 35104
17-03-17 20:55:35.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:35.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:35.358 -07 000000459 INF: FPGA: Recv ZSGSRD 35110
17-03-17 20:55:35.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:35.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:35.368 -07 000000541 INF: FPGA: Recv ZSGSRD 35117
17-03-17 20:55:35.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:35.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:35.378 -07 000000475 INF: FPGA: Recv ZSGSRD 35106
17-03-17 20:55:35.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:35.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:35.388 -07 000000576 INF: FPGA: Recv ZSGSRD 35111
17-03-17 20:55:35.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:35.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:35.398 -07 000000459 INF: FPGA: Recv ZSGSRD 35108
17-03-17 20:55:35.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:35.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:35.408 -07 000000541 INF: FPGA: Recv ZSGSRD 35111
17-03-17 20:55:35.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:35.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:35.418 -07 000000475 INF: FPGA: Recv ZSGSRD 35109
17-03-17 20:55:35.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:35.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:35.428 -07 000000429 INF: FPGA: Recv ZPIEZORD 31030
17-03-17 20:55:35.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:35.438 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.529 V. Piezo Error = -9.0 V.
17-03-17 20:55:35.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35110 (-165.0 uncal um), Error = 0.9 uncal um, Median = 35110 (-165.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35104 (-165.0 uncal um), Max = 35117 (-165.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:55:35.438 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35110, posNoise = 7, negNoise = 6
17-03-17 20:55:35.438 -07 000000610 INF: Z Motor: After move to -0.165878, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:35.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:55:35.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:35.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:35.438 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:35.438 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:35.438 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:55:35.438 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:35.438 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:55:35.438 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:55:35.448 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:55:35.448 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:55:35.448 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:35.448 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:55:35.448 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:55:35.448 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:55:35.448 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:55:35.448 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:55:35.458 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:55:35.458 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:55:35.458 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 20:55:35.458 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:55:35.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 36412 150\n [Camera]
17-03-17 20:55:35.658 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:55:36.078 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:55:36.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:55:36.088 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:36.088 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:36.088 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:55:36.088 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:55:36.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:55:36.088 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:36.088 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:36.088 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:55:36.278 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36412 807
17-03-17 20:55:36.428 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:55:36.468 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:55:36.468 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:55:36.468 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:36.468 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:55:36.468 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 20:55:36.468 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:36.468 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:36.468 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:36.468 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:55:36.478 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:55:36.628 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:55:36.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:55:36.628 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:36.628 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:55:36.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:55:36.628 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:36.638 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:36.638 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:55:36.638 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:36.638 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:55:36.818 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-17 20:55:36.818 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:55:36.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 36412 150' command took 2 ms to send, 1356 ms to get response, and 1359 ms overall
17-03-17 20:55:36.828 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:55:36.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:55:37.028 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 20:55:37.028 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:55:37.028 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:37.028 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 20:55:37.028 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:55:37.028 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:37.038 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:37.038 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:37.038 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:55:37.038 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:55:37.038 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 20:55:37.078 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:55:37.078 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:55:37.118 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 20:55:37.118 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 20:55:37.118 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 20:55:37.128 -07 000000502 INF: FPGA: Recv EMCUR 
17-03-17 20:55:37.128 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:55:37.128 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 20:55:37.628 -07 000000608 INF: FPGA: Recv EMIN
17-03-17 20:55:37.628 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 494 ms to get response, and 502 ms overall
17-03-17 20:55:37.628 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 20:55:37.628 -07 000000429 INF: FPGA: Recv EMCUR 
17-03-17 20:55:37.638 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:55:37.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:55:37.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.165877440308362. ------
17-03-17 20:55:37.638 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:37.638 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14037 mm
17-03-17 20:55:37.638 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:55:37.638 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 20:55:37.638 -07 000000433 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-17 20:55:37.638 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30663, sync = True, waitForSettling = False)
17-03-17 20:55:37.638 -07 000000502 INF: Z Motor: Moving to -0.140366 mm, started at -0.165877 mm, distance = 25.51 um
17-03-17 20:55:37.638 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:37.648 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:55:37.648 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:37.648 -07 000000608 INF: FPGA: Recv YRDPOS 153258
17-03-17 20:55:37.658 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:55:37.658 -07 000000433 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:37.658 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:55:37.658 -07 000000433 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 20:55:37.658 -07 000000433 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 20:55:37.668 -07 000000502 INF: FPGA: Xmit ZDACW 30663\n [Z Motor]
17-03-17 20:55:37.668 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:55:37.678 -07 000000502 INF: FPGA: 'ZDACW 30663' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 20:55:37.678 -07 000000433 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 20:55:37.688 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:37.688 -07 000000608 INF: FPGA: Recv ZDACR 30663
17-03-17 20:55:37.698 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:55:37.698 -07 000000502 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 20:55:37.858 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:55:37.858 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-17 20:55:39.268 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.007176,
17-03-17 20:55:39.298 -07 000000415 INF: FPGA: Recv YMVTO 122703 23905
17-03-17 20:55:39.298 -07 000000433 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1645 ms overall
17-03-17 20:55:39.298 -07 000000433 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 20:55:39.298 -07 000000433 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23873 steps, but required 23905 steps (14.941 mm). Slippage = 0.020 mm (0.00%).
17-03-17 20:55:39.298 -07 000000433 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1645 ms, distance = 14.919 mm, average velocity = 9.070 mm/sec
17-03-17 20:55:41.828 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:55:41.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:55:42.148 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:42.148 -07 000000429 INF: FPGA: Recv YRDPOS 122697
17-03-17 20:55:42.158 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:42.158 -07 000000433 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:42.188 -07 000000433 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:55:42.188 -07 000000433 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 20:55:42.188 -07 000000433 INF: Y Motor: Moved to 59.9106 after 4541 ms
17-03-17 20:55:42.188 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140366 mm (DAC = 30663)
17-03-17 20:55:42.188 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:42.188 -07 000000512 INF: FPGA: Recv ZSGSRD 31139
17-03-17 20:55:42.198 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:55:42.198 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:42.198 -07 000000608 INF: FPGA: Recv ZSGSRD 31138
17-03-17 20:55:42.208 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:42.208 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:42.208 -07 000000433 INF: FPGA: Recv ZSGSRD 31140
17-03-17 20:55:42.218 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:42.218 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:42.218 -07 000000512 INF: FPGA: Recv ZSGSRD 31137
17-03-17 20:55:42.228 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:42.228 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:42.228 -07 000000433 INF: FPGA: Recv ZSGSRD 31140
17-03-17 20:55:42.238 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:42.238 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:42.238 -07 000000608 INF: FPGA: Recv ZSGSRD 31136
17-03-17 20:55:42.248 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:42.248 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:42.248 -07 000000576 INF: FPGA: Recv ZSGSRD 31143
17-03-17 20:55:42.258 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:42.258 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:42.258 -07 000000576 INF: FPGA: Recv ZSGSRD 31144
17-03-17 20:55:42.268 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:42.268 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:42.268 -07 000000433 INF: FPGA: Recv ZSGSRD 31138
17-03-17 20:55:42.278 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:42.278 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:42.278 -07 000000608 INF: FPGA: Recv ZSGSRD 31141
17-03-17 20:55:42.288 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:42.288 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:42.288 -07 000000433 INF: FPGA: Recv ZPIEZORD 26810
17-03-17 20:55:42.298 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:42.298 -07 000000475 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.679 V. Piezo Error = -9.5 V.
17-03-17 20:55:42.298 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.4 um, Read 10 ADC samples: Avg = 31140 (-139.6 uncal um), Error = 0.8 uncal um, Median = 31140 (-139.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 31136 (-139.5 uncal um), Max = 31144 (-139.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:55:42.298 -07 000000475 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31140, posNoise = 4, negNoise = 4
17-03-17 20:55:42.298 -07 000000475 INF: Z Motor: After move to -0.140366, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:42.298 -07 000000475 INF: Z Motor: Settle wait time = 4545 ms, measure time = 106 ms (allowed 150 ms), total time = 4651 ms
17-03-17 20:55:42.298 -07 000000475 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 20:55:42.348 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4703 ms
17-03-17 20:55:42.348 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:55:42.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:42.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:42.348 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:42.348 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:42.348 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:55:42.348 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:42.348 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:42.348 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 20:55:42.378 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 20:55:42.378 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:55:42.378 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 20:55:42.378 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:55:42.398 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:55:42.398 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 20:55:42.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:55:42.438 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:55:42.638 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:55:42.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:55:42.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:55:42.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:55:42.678 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:55:42.678 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 20:55:42.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 20:55:42.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:55:42.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:42.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:55:42.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:55:42.878 -07 000000415 INF: Image SNR check: start
17-03-17 20:55:42.878 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:42.878 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:42.888 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:55:42.888 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:55:42.888 -07 000000415 INF: Image SNR check: pass  [peak (Max-Min)=61.94]
17-03-17 20:55:42.888 -07 000000415 INF: Autofocus start
17-03-17 20:55:42.888 -07 000000415 INF: MeasureProfile start
17-03-17 20:55:42.898 -07 000000415 INF: MeasureProfile done
17-03-17 20:55:42.898 -07 000000415 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:55:42.898 -07 000000415 INF: Autofocus finished
17-03-17 20:55:43.088 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:55:43.088 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:55:43.088 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.140373318105571. ----------
17-03-17 20:55:43.088 -07 000000610 INF: Cycle	44	Tile	1	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:55:43.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29158, sync = True, waitForSettling = True)
17-03-17 20:55:43.098 -07 000000610 INF: Z Motor: Moving to -0.133477 mm, started at -0.140373 mm, distance = 6.90 um
17-03-17 20:55:43.098 -07 000000610 INF: FPGA: Xmit ZDACW 29158\n [Z Motor]
17-03-17 20:55:43.098 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:55:43.108 -07 000000610 INF: FPGA: 'ZDACW 29158' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:55:43.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:43.108 -07 000000512 INF: FPGA: Recv ZDACR 29158
17-03-17 20:55:43.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:43.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:55:43.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:43.268 -07 000000512 INF: FPGA: Recv ZSGSRD 30067
17-03-17 20:55:43.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:43.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:43.278 -07 000000415 INF: FPGA: Recv ZSGSRD 30072
17-03-17 20:55:43.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:43.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:43.288 -07 000000415 INF: FPGA: Recv ZSGSRD 30067
17-03-17 20:55:43.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:43.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:43.298 -07 000000415 INF: FPGA: Recv ZSGSRD 30066
17-03-17 20:55:43.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:43.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:43.308 -07 000000512 INF: FPGA: Recv ZSGSRD 30074
17-03-17 20:55:43.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:43.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:43.318 -07 000000512 INF: FPGA: Recv ZSGSRD 30059
17-03-17 20:55:43.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:43.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:43.328 -07 000000512 INF: FPGA: Recv ZSGSRD 30064
17-03-17 20:55:43.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:43.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:43.338 -07 000000415 INF: FPGA: Recv ZSGSRD 30070
17-03-17 20:55:43.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:43.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:43.348 -07 000000429 INF: FPGA: Recv ZSGSRD 30072
17-03-17 20:55:43.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:43.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:43.358 -07 000000512 INF: FPGA: Recv ZSGSRD 30070
17-03-17 20:55:43.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:43.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:43.368 -07 000000429 INF: FPGA: Recv ZPIEZORD 25688
17-03-17 20:55:43.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:43.378 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.449 V. Piezo Error = -9.6 V.
17-03-17 20:55:43.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.5 um, Read 10 ADC samples: Avg = 30068 (-132.7 uncal um), Error = 0.8 uncal um, Median = 30068 (-132.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30059 (-132.6 uncal um), Max = 30074 (-132.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:55:43.378 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30068, posNoise = 6, negNoise = 9
17-03-17 20:55:43.378 -07 000000610 INF: Z Motor: After move to -0.133477, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:43.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:55:43.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:43.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:43.378 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:43.378 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:43.378 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:55:43.378 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:43.388 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:43.388 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:55:43.388 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:55:43.388 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:55:43.388 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:55:43.388 -07 000000415 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 20:55:43.388 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:55:43.388 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:55:43.398 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 20:55:43.398 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:55:43.408 -07 000000415 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 20:55:43.408 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:55:43.408 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:55:43.408 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:55:43.418 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:55:43.418 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 20:55:43.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 29335 150\n [Camera]
17-03-17 20:55:43.618 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 20:55:44.038 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:55:44.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:55:44.048 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:55:44.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:55:44.048 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:44.048 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:44.048 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:44.048 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:44.048 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:55:44.048 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:55:44.238 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29335 807
17-03-17 20:55:44.388 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:55:44.418 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:55:44.418 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:55:44.418 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:44.428 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:55:44.428 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:55:44.428 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:55:44.428 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:44.438 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:55:44.438 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:55:44.448 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:55:44.588 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:55:44.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:55:44.588 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:44.698 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:55:44.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:55:44.698 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:44.708 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.011254,
17-03-17 20:55:44.708 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:44.708 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:55:44.708 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:44.708 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:55:44.778 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-17 20:55:44.778 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:55:44.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 29335 150' command took 2 ms to send, 1356 ms to get response, and 1359 ms overall
17-03-17 20:55:44.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:55:44.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.133486562689603. ------
17-03-17 20:55:44.788 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:44.788 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13997 mm
17-03-17 20:55:44.788 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:55:44.788 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:44.788 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 20:55:44.788 -07 000000448 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 20:55:44.788 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30575, sync = True, waitForSettling = False)
17-03-17 20:55:44.788 -07 000000429 INF: Z Motor: Moving to -0.139963 mm, started at -0.133487 mm, distance = -6.48 um
17-03-17 20:55:44.798 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:55:44.798 -07 000000429 INF: FPGA: Xmit ZDACW 30575\n [Z Motor]
17-03-17 20:55:44.798 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:55:44.808 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:44.808 -07 000000429 INF: FPGA: 'ZDACW 30575' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:55:44.808 -07 000000462 INF: FPGA: Recv YRDPOS 122697
17-03-17 20:55:44.818 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:55:44.818 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:55:44.818 -07 000000448 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:44.818 -07 000000448 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:55:44.818 -07 000000448 INF: Y Motor: Moving 1331 steps2
17-03-17 20:55:44.828 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:44.828 -07 000000415 INF: FPGA: Recv ZDACR 30575
17-03-17 20:55:44.838 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:55:44.838 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:55:44.838 -07 000000429 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:55:45.018 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:55:45.018 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 20:55:45.098 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 20:55:45.098 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:55:45.098 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:45.098 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:55:45.098 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 20:55:45.098 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:45.098 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:45.098 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:45.098 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 20:55:45.108 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:55:45.208 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:55:45.208 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 20:55:45.238 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:45.248 -07 000000541 INF: FPGA: Recv YRDPOS 124380
17-03-17 20:55:45.248 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:55:45.248 -07 000000448 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:45.248 -07 000000448 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 20:55:45.248 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-17 20:55:46.198 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:46.198 -07 000000501 INF: FPGA: Recv YRDPOS 124380
17-03-17 20:55:46.208 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:46.208 -07 000000448 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:46.228 -07 000000448 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:55:46.228 -07 000000448 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:55:46.228 -07 000000448 INF: Y Motor: Moved to 60.7324 after 1439 ms (table move)
17-03-17 20:55:46.228 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139963 mm (DAC = 30575)
17-03-17 20:55:46.228 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:46.238 -07 000000462 INF: FPGA: Recv ZSGSRD 31087
17-03-17 20:55:46.238 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:55:46.238 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:46.238 -07 000000501 INF: FPGA: Recv ZSGSRD 31077
17-03-17 20:55:46.248 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:55:46.248 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:46.248 -07 000000415 INF: FPGA: Recv ZSGSRD 31073
17-03-17 20:55:46.258 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:46.258 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:46.258 -07 000000415 INF: FPGA: Recv ZSGSRD 31087
17-03-17 20:55:46.268 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:46.268 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:46.268 -07 000000424 INF: FPGA: Recv ZSGSRD 31084
17-03-17 20:55:46.278 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:46.278 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:46.278 -07 000000424 INF: FPGA: Recv ZSGSRD 31073
17-03-17 20:55:46.288 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:46.288 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:46.288 -07 000000415 INF: FPGA: Recv ZSGSRD 31078
17-03-17 20:55:46.298 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:46.298 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:46.298 -07 000000415 INF: FPGA: Recv ZSGSRD 31075
17-03-17 20:55:46.308 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:46.308 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:46.308 -07 000000415 INF: FPGA: Recv ZSGSRD 31075
17-03-17 20:55:46.318 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:46.318 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:46.318 -07 000000415 INF: FPGA: Recv ZSGSRD 31072
17-03-17 20:55:46.328 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:46.328 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:46.328 -07 000000415 INF: FPGA: Recv ZPIEZORD 27041
17-03-17 20:55:46.338 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:46.338 -07 000000382 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.665 V. Piezo Error = -8.9 V.
17-03-17 20:55:46.338 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31078 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31076 (-139.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 31072 (-139.1 uncal um), Max = 31087 (-139.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:55:46.338 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31078, posNoise = 9, negNoise = 6
17-03-17 20:55:46.338 -07 000000382 INF: Z Motor: After move to -0.139963, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:46.338 -07 000000382 INF: Z Motor: Settle wait time = 1442 ms, measure time = 103 ms (allowed 150 ms), total time = 1545 ms
17-03-17 20:55:46.338 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:55:46.388 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 20:55:46.388 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:55:46.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:46.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:46.388 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:46.388 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:46.398 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:55:46.398 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:46.398 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:46.398 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:55:46.398 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:55:46.398 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:55:46.408 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:55:46.408 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:55:46.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:55:46.458 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:55:46.658 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:55:46.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:55:46.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:55:46.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:55:46.698 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:55:46.698 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:55:46.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 286 ms overall
17-03-17 20:55:46.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:55:46.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:46.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:55:46.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:55:46.828 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:55:46.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:55:46.898 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:46.898 -07 000000382 INF: Autofocus start
17-03-17 20:55:46.898 -07 000000382 INF: MeasureProfile start
17-03-17 20:55:46.908 -07 000000382 INF: MeasureProfile done
17-03-17 20:55:46.908 -07 000000382 INF: X=32  Z correction [um]=0.1299841
17-03-17 20:55:46.908 -07 000000382 INF: Autofocus finished
17-03-17 20:55:46.908 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:46.908 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 9 ms to get response, and 14 ms overall
17-03-17 20:55:46.908 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:55:47.118 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:55:47.118 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 202 ms to get response, and 202 ms overall
17-03-17 20:55:47.118 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.139975016952782. ----------
17-03-17 20:55:47.118 -07 000000610 INF: Cycle	44	Tile	2	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:55:47.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29116, sync = True, waitForSettling = True)
17-03-17 20:55:47.128 -07 000000610 INF: Z Motor: Moving to -0.133285 mm, started at -0.139975 mm, distance = 6.69 um
17-03-17 20:55:47.128 -07 000000610 INF: FPGA: Xmit ZDACW 29116\n [Z Motor]
17-03-17 20:55:47.128 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:55:47.138 -07 000000610 INF: FPGA: 'ZDACW 29116' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:47.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:47.138 -07 000000382 INF: FPGA: Recv ZDACR 29116
17-03-17 20:55:47.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:47.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:55:47.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:47.298 -07 000000382 INF: FPGA: Recv ZSGSRD 30036
17-03-17 20:55:47.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:47.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:47.308 -07 000000415 INF: FPGA: Recv ZSGSRD 30041
17-03-17 20:55:47.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:47.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:47.318 -07 000000382 INF: FPGA: Recv ZSGSRD 30040
17-03-17 20:55:47.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:47.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:47.328 -07 000000382 INF: FPGA: Recv ZSGSRD 30035
17-03-17 20:55:47.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:47.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:47.338 -07 000000415 INF: FPGA: Recv ZSGSRD 30039
17-03-17 20:55:47.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:47.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:47.348 -07 000000382 INF: FPGA: Recv ZSGSRD 30036
17-03-17 20:55:47.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:47.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:47.358 -07 000000415 INF: FPGA: Recv ZSGSRD 30036
17-03-17 20:55:47.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:47.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:47.368 -07 000000382 INF: FPGA: Recv ZSGSRD 30040
17-03-17 20:55:47.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:47.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:47.378 -07 000000415 INF: FPGA: Recv ZSGSRD 30032
17-03-17 20:55:47.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:47.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:47.388 -07 000000415 INF: FPGA: Recv ZSGSRD 30034
17-03-17 20:55:47.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:47.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:47.398 -07 000000382 INF: FPGA: Recv ZPIEZORD 25701
17-03-17 20:55:47.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:47.408 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.443 V. Piezo Error = -9.5 V.
17-03-17 20:55:47.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30037 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30036 (-132.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30032 (-132.5 uncal um), Max = 30041 (-132.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:55:47.408 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30037, posNoise = 4, negNoise = 5
17-03-17 20:55:47.408 -07 000000610 INF: Z Motor: After move to -0.133285, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:47.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:55:47.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:47.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:47.408 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:47.408 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:47.408 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:55:47.408 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:47.408 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:55:47.408 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:55:47.408 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:47.408 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:55:47.408 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:55:47.408 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:55:47.418 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:55:47.418 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:55:47.418 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:55:47.418 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:55:47.428 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:55:47.428 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:55:47.428 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:55:47.428 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:55:47.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 29293 150\n [Camera]
17-03-17 20:55:47.638 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:55:48.058 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:55:48.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:55:48.058 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:48.058 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:48.058 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:55:48.058 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:55:48.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:55:48.058 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:48.058 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:48.058 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:55:48.248 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29293 807
17-03-17 20:55:48.398 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:55:48.458 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:55:48.458 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:55:48.458 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:48.558 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 498 ms.
17-03-17 20:55:48.558 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 499 ms.
17-03-17 20:55:48.558 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:48.568 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 108 ms.
17-03-17 20:55:48.568 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-17 20:55:48.568 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:48.568 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 20:55:48.598 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:55:48.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:55:48.598 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:48.608 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:55:48.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:55:48.608 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:48.608 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:48.608 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:55:48.608 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:48.608 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:55:48.798 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-17 20:55:48.798 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:55:48.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 29293 150' command took 2 ms to send, 1351 ms to get response, and 1361 ms overall
17-03-17 20:55:48.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:55:48.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.133287412113209. ------
17-03-17 20:55:48.798 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:48.798 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13969 mm
17-03-17 20:55:48.798 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:55:48.808 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:48.808 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 20:55:48.808 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:55:48.808 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 20:55:48.808 -07 000000576 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 20:55:48.808 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 30515, sync = True, waitForSettling = False)
17-03-17 20:55:48.808 -07 000000475 INF: Z Motor: Moving to -0.139689 mm, started at -0.133287 mm, distance = -6.40 um
17-03-17 20:55:48.818 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:48.818 -07 000000541 INF: FPGA: Recv YRDPOS 124381
17-03-17 20:55:48.828 -07 000000475 INF: FPGA: Xmit ZDACW 30515\n [Z Motor]
17-03-17 20:55:48.828 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 20:55:48.828 -07 000000576 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:48.828 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:55:48.828 -07 000000576 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:55:48.828 -07 000000576 INF: Y Motor: Moving 1344 steps-21
17-03-17 20:55:48.838 -07 000000475 INF: FPGA: 'ZDACW 30515' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:55:48.838 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:55:48.848 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:48.848 -07 000000541 INF: FPGA: Recv ZDACR 30515
17-03-17 20:55:48.858 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:55:48.858 -07 000000475 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 20:55:49.008 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:55:49.008 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:55:49.008 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:49.008 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:55:49.008 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:55:49.008 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:55:49.008 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:49.008 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 20:55:49.018 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:49.018 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:55:49.018 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:49.018 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:55:49.208 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:55:49.208 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 20:55:49.248 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:49.248 -07 000000458 INF: FPGA: Recv YRDPOS 126082
17-03-17 20:55:49.258 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:55:49.258 -07 000000576 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:49.258 -07 000000576 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:55:49.258 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.840 mm, average velocity = 2.188 mm/sec
17-03-17 20:55:50.078 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.011254,
17-03-17 20:55:50.208 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:50.208 -07 000000608 INF: FPGA: Recv YRDPOS 126082
17-03-17 20:55:50.218 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:50.218 -07 000000576 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:50.238 -07 000000576 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:55:50.238 -07 000000576 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:55:50.238 -07 000000576 INF: Y Motor: Moved to 61.5635 after 1429 ms (table move)
17-03-17 20:55:50.238 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139689 mm (DAC = 30515)
17-03-17 20:55:50.238 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:50.238 -07 000000415 INF: FPGA: Recv ZSGSRD 31035
17-03-17 20:55:50.248 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:55:50.248 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:50.248 -07 000000415 INF: FPGA: Recv ZSGSRD 31037
17-03-17 20:55:50.258 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:50.258 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:50.258 -07 000000415 INF: FPGA: Recv ZSGSRD 31032
17-03-17 20:55:50.268 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:50.268 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:50.268 -07 000000415 INF: FPGA: Recv ZSGSRD 31045
17-03-17 20:55:50.278 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:50.278 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:50.278 -07 000000415 INF: FPGA: Recv ZSGSRD 31037
17-03-17 20:55:50.288 -07 000000433 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:50.288 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:50.288 -07 000000415 INF: FPGA: Recv ZSGSRD 31041
17-03-17 20:55:50.298 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:50.298 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:50.298 -07 000000415 INF: FPGA: Recv ZSGSRD 31035
17-03-17 20:55:50.308 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:50.308 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:50.308 -07 000000415 INF: FPGA: Recv ZSGSRD 31029
17-03-17 20:55:50.318 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:50.318 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:50.318 -07 000000415 INF: FPGA: Recv ZSGSRD 31028
17-03-17 20:55:50.328 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:50.328 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:50.328 -07 000000415 INF: FPGA: Recv ZSGSRD 31033
17-03-17 20:55:50.338 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:50.338 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:50.338 -07 000000415 INF: FPGA: Recv ZPIEZORD 27025
17-03-17 20:55:50.348 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:50.348 -07 000000433 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.656 V. Piezo Error = -8.8 V.
17-03-17 20:55:50.348 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31035 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31035 (-138.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 31028 (-138.9 uncal um), Max = 31045 (-139.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:55:50.348 -07 000000433 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31035, posNoise = 10, negNoise = 7
17-03-17 20:55:50.348 -07 000000433 INF: Z Motor: After move to -0.139689, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:50.348 -07 000000433 INF: Z Motor: Settle wait time = 1432 ms, measure time = 104 ms (allowed 150 ms), total time = 1536 ms
17-03-17 20:55:50.348 -07 000000433 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:55:50.398 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 20:55:50.398 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:55:50.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:50.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:50.398 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:50.398 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:50.398 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:55:50.398 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:50.408 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:50.408 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:55:50.408 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:55:50.408 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:55:50.418 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:55:50.418 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:55:50.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:55:50.488 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:55:50.688 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:55:50.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:55:50.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:55:50.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:55:50.728 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:55:50.728 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 20:55:50.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 305 ms overall
17-03-17 20:55:50.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:55:50.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:50.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:55:50.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:55:50.828 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:50.828 -07 000000512 INF: Autofocus start
17-03-17 20:55:50.828 -07 000000512 INF: MeasureProfile start
17-03-17 20:55:50.828 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:50.838 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:55:50.838 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:55:50.838 -07 000000512 INF: MeasureProfile done
17-03-17 20:55:50.838 -07 000000512 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:55:50.838 -07 000000512 INF: Autofocus finished
17-03-17 20:55:51.038 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:55:51.038 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:55:51.038 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.139698775830686. ----------
17-03-17 20:55:51.038 -07 000000610 INF: Cycle	44	Tile	3	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:55:51.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29022, sync = True, waitForSettling = True)
17-03-17 20:55:51.048 -07 000000610 INF: Z Motor: Moving to -0.132854 mm, started at -0.139699 mm, distance = 6.84 um
17-03-17 20:55:51.048 -07 000000610 INF: FPGA: Xmit ZDACW 29022\n [Z Motor]
17-03-17 20:55:51.048 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:55:51.058 -07 000000610 INF: FPGA: 'ZDACW 29022' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:51.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:51.058 -07 000000415 INF: FPGA: Recv ZDACR 29022
17-03-17 20:55:51.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:51.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:55:51.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:51.218 -07 000000415 INF: FPGA: Recv ZSGSRD 29970
17-03-17 20:55:51.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:51.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:51.228 -07 000000415 INF: FPGA: Recv ZSGSRD 29970
17-03-17 20:55:51.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:51.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:51.238 -07 000000462 INF: FPGA: Recv ZSGSRD 29969
17-03-17 20:55:51.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:51.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:51.248 -07 000000462 INF: FPGA: Recv ZSGSRD 29965
17-03-17 20:55:51.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:51.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:51.258 -07 000000462 INF: FPGA: Recv ZSGSRD 29972
17-03-17 20:55:51.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:51.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:51.268 -07 000000462 INF: FPGA: Recv ZSGSRD 29971
17-03-17 20:55:51.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:51.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:51.278 -07 000000626 INF: FPGA: Recv ZSGSRD 29970
17-03-17 20:55:51.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:51.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:51.288 -07 000000475 INF: FPGA: Recv ZSGSRD 29971
17-03-17 20:55:51.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:51.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:51.298 -07 000000475 INF: FPGA: Recv ZSGSRD 29971
17-03-17 20:55:51.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:51.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:51.308 -07 000000415 INF: FPGA: Recv ZSGSRD 29967
17-03-17 20:55:51.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:51.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:51.318 -07 000000415 INF: FPGA: Recv ZPIEZORD 25690
17-03-17 20:55:51.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:51.328 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.428 V. Piezo Error = -9.4 V.
17-03-17 20:55:51.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29970 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29970 (-132.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29965 (-132.0 uncal um), Max = 29972 (-132.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:55:51.328 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29970, posNoise = 2, negNoise = 5
17-03-17 20:55:51.328 -07 000000610 INF: Z Motor: After move to -0.132854, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:51.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:55:51.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:51.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:51.328 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:51.328 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:55:51.328 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:51.328 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:51.328 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:55:51.328 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:55:51.328 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:51.328 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:55:51.328 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:55:51.328 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:55:51.328 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:55:51.328 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:55:51.338 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:55:51.338 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:55:51.338 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:55:51.338 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:55:51.338 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:55:51.338 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:55:51.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 29199 150\n [Camera]
17-03-17 20:55:51.548 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:55:51.828 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:55:51.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:55:51.968 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:55:51.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:55:51.968 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:51.968 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:51.968 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 20:55:51.968 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:55:51.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:55:51.968 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:51.968 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:51.968 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 20:55:52.158 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29199 807
17-03-17 20:55:52.308 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:55:52.348 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:55:52.348 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:55:52.348 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:52.348 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:55:52.348 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:55:52.348 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:52.348 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:52.348 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:52.358 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:55:52.358 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 20:55:52.508 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:55:52.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:55:52.508 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:52.508 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:52.508 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 20:55:52.518 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:55:52.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:55:52.518 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:52.518 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:52.518 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 20:55:52.698 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-17 20:55:52.708 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:55:52.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 29199 150' command took 2 ms to send, 1350 ms to get response, and 1359 ms overall
17-03-17 20:55:52.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:55:52.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.132856989899711. ------
17-03-17 20:55:52.708 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:52.708 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13922 mm
17-03-17 20:55:52.708 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:55:52.718 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:52.718 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:55:52.718 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:55:52.718 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 20:55:52.718 -07 000000501 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 20:55:52.718 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30413, sync = True, waitForSettling = False)
17-03-17 20:55:52.718 -07 000000415 INF: Z Motor: Moving to -0.139222 mm, started at -0.132857 mm, distance = -6.36 um
17-03-17 20:55:52.728 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:52.728 -07 000000433 INF: FPGA: Recv YRDPOS 126082
17-03-17 20:55:52.738 -07 000000415 INF: FPGA: Xmit ZDACW 30413\n [Z Motor]
17-03-17 20:55:52.738 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:55:52.738 -07 000000501 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:52.738 -07 000000501 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:55:52.738 -07 000000501 INF: Y Motor: Moving 1343 steps-19
17-03-17 20:55:52.738 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:55:52.748 -07 000000415 INF: FPGA: 'ZDACW 30413' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:55:52.748 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:55:52.758 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:52.758 -07 000000512 INF: FPGA: Recv ZDACR 30413
17-03-17 20:55:52.768 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:55:52.768 -07 000000415 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 20:55:52.908 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:55:52.908 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:55:52.908 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:52.908 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:55:52.908 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:55:52.908 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:52.908 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:52.908 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:55:52.908 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:55:52.918 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:55:52.918 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:55:52.918 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:55:53.118 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 20:55:53.118 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:55:53.158 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:53.738 -07 000000424 INF: FPGA: Recv YRDPOS 127785
17-03-17 20:55:53.738 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 570 ms to get response, and 574 ms overall
17-03-17 20:55:53.738 -07 000000501 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:53.738 -07 000000501 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 20:55:53.738 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.168 mm/sec
17-03-17 20:55:54.688 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:54.688 -07 000000541 INF: FPGA: Recv YRDPOS 127785
17-03-17 20:55:54.698 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:54.698 -07 000000501 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:54.718 -07 000000501 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:55:54.718 -07 000000501 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:55:54.718 -07 000000501 INF: Y Motor: Moved to 62.3950 after 2003 ms (table move)
17-03-17 20:55:54.718 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139222 mm (DAC = 30413)
17-03-17 20:55:54.718 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:54.728 -07 000000541 INF: FPGA: Recv ZSGSRD 30962
17-03-17 20:55:54.728 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:55:54.728 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:54.728 -07 000000415 INF: FPGA: Recv ZSGSRD 30963
17-03-17 20:55:54.738 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:55:54.738 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:54.738 -07 000000541 INF: FPGA: Recv ZSGSRD 30959
17-03-17 20:55:54.748 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:54.748 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:54.748 -07 000000429 INF: FPGA: Recv ZSGSRD 30959
17-03-17 20:55:54.758 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:54.758 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:54.758 -07 000000415 INF: FPGA: Recv ZSGSRD 30959
17-03-17 20:55:54.768 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:54.768 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:54.768 -07 000000429 INF: FPGA: Recv ZSGSRD 30962
17-03-17 20:55:54.778 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:54.778 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:54.778 -07 000000424 INF: FPGA: Recv ZSGSRD 30969
17-03-17 20:55:54.788 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:54.788 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:54.788 -07 000000501 INF: FPGA: Recv ZSGSRD 30962
17-03-17 20:55:54.798 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:54.798 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:54.798 -07 000000501 INF: FPGA: Recv ZSGSRD 30957
17-03-17 20:55:54.808 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:54.808 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:54.808 -07 000000415 INF: FPGA: Recv ZSGSRD 30958
17-03-17 20:55:54.818 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:54.818 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:54.818 -07 000000541 INF: FPGA: Recv ZPIEZORD 27009
17-03-17 20:55:54.828 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:54.828 -07 000000626 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.641 V. Piezo Error = -8.7 V.
17-03-17 20:55:54.828 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30961 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30960 (-138.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30957 (-138.4 uncal um), Max = 30969 (-138.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:55:54.828 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30961, posNoise = 8, negNoise = 4
17-03-17 20:55:54.828 -07 000000626 INF: Z Motor: After move to -0.139222, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:54.828 -07 000000626 INF: Z Motor: Settle wait time = 2005 ms, measure time = 104 ms (allowed 150 ms), total time = 2109 ms
17-03-17 20:55:54.828 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:55:54.878 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2164 ms
17-03-17 20:55:54.878 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:55:54.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:54.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:54.878 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:54.878 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:54.878 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:55:54.878 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:54.878 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:55:54.878 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:55:54.888 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:55:54.888 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:55:54.888 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:55:54.888 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:55:54.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:55:54.938 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:55:55.138 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:55:55.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:55:55.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:55:55.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) start.
17-03-17 20:55:55.178 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:55:55.178 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 20:55:55.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:55:55.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 682359904, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:55:55.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:55.278 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:55.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 132 ms.
17-03-17 20:55:55.378 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:55.378 -07 000000424 INF: Autofocus start
17-03-17 20:55:55.378 -07 000000424 INF: MeasureProfile start
17-03-17 20:55:55.378 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:55.388 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:55:55.388 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:55:55.388 -07 000000424 INF: MeasureProfile done
17-03-17 20:55:55.388 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:55:55.388 -07 000000424 INF: Autofocus finished
17-03-17 20:55:55.448 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.977204,
17-03-17 20:55:55.588 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:55:55.588 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 20:55:55.588 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.139223384132196. ----------
17-03-17 20:55:55.588 -07 000000610 INF: Cycle	44	Tile	4	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:55:55.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28920, sync = True, waitForSettling = True)
17-03-17 20:55:55.598 -07 000000610 INF: Z Motor: Moving to -0.132387 mm, started at -0.139223 mm, distance = 6.84 um
17-03-17 20:55:55.598 -07 000000610 INF: FPGA: Xmit ZDACW 28920\n [Z Motor]
17-03-17 20:55:55.598 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:55:55.608 -07 000000610 INF: FPGA: 'ZDACW 28920' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:55:55.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:55.608 -07 000000541 INF: FPGA: Recv ZDACR 28920
17-03-17 20:55:55.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:55.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:55:55.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:55.768 -07 000000501 INF: FPGA: Recv ZSGSRD 29895
17-03-17 20:55:55.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:55.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:55.788 -07 000000576 INF: FPGA: Recv ZSGSRD 29899
17-03-17 20:55:55.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:55:55.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:55.818 -07 000000459 INF: FPGA: Recv ZSGSRD 29893
17-03-17 20:55:55.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:55:55.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:55.838 -07 000000424 INF: FPGA: Recv ZSGSRD 29899
17-03-17 20:55:55.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:55:55.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:55.848 -07 000000576 INF: FPGA: Recv ZSGSRD 29898
17-03-17 20:55:55.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:55.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:55.858 -07 000000424 INF: FPGA: Recv ZSGSRD 29895
17-03-17 20:55:55.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:55.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:55.868 -07 000000459 INF: FPGA: Recv ZSGSRD 29900
17-03-17 20:55:55.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:55.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:55.878 -07 000000429 INF: FPGA: Recv ZSGSRD 29900
17-03-17 20:55:55.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:55.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:55.888 -07 000000459 INF: FPGA: Recv ZSGSRD 29895
17-03-17 20:55:55.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:55.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:55.898 -07 000000415 INF: FPGA: Recv ZSGSRD 29899
17-03-17 20:55:55.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:55.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:55.908 -07 000000501 INF: FPGA: Recv ZPIEZORD 25594
17-03-17 20:55:55.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:55.918 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.413 V. Piezo Error = -9.5 V.
17-03-17 20:55:55.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29897 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29898 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29893 (-131.6 uncal um), Max = 29900 (-131.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:55:55.918 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29897, posNoise = 3, negNoise = 4
17-03-17 20:55:55.918 -07 000000610 INF: Z Motor: After move to -0.132387, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:55.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 319 ms)
17-03-17 20:55:55.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:55.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:55.918 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:55.918 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:55.918 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:55:55.918 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:55:55.918 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:55:55.918 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:55.918 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:55.918 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:55:55.918 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 20:55:55.918 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:55:55.918 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:55:55.918 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:55:55.928 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:55:55.928 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:55:55.938 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 20:55:55.938 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:55:55.938 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 20:55:55.938 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:55:55.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 29097 150\n [Camera]
17-03-17 20:55:56.138 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:55:56.568 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:55:56.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:55:56.568 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:56.568 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:56.568 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 20:55:56.568 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:55:56.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:55:56.568 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:56.568 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:56.568 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 20:55:56.758 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29097 807
17-03-17 20:55:56.828 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:55:56.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:55:56.908 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:55:56.968 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 20:55:56.968 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:55:56.968 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:56.968 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 20:55:56.968 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:55:56.968 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:56.978 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:56.978 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 20:55:56.978 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:55:56.978 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:55:57.108 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:55:57.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:55:57.108 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:55:57.108 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:55:57.108 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 20:55:57.108 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:55:57.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:55:57.118 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:55:57.118 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:55:57.118 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 20:55:57.298 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-17 20:55:57.298 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:55:57.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 29097 150' command took 2 ms to send, 1348 ms to get response, and 1359 ms overall
17-03-17 20:55:57.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:55:57.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.132388022413362. ------
17-03-17 20:55:57.308 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:57.308 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13905 mm
17-03-17 20:55:57.308 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:55:57.308 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30376, sync = True, waitForSettling = False)
17-03-17 20:55:57.308 -07 000000429 INF: Z Motor: Moving to -0.139052 mm, started at -0.132388 mm, distance = -6.66 um
17-03-17 20:55:57.308 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 20:55:57.308 -07 000000459 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 20:55:57.308 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:57.318 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:55:57.318 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:57.318 -07 000000415 INF: FPGA: Recv YRDPOS 127785
17-03-17 20:55:57.328 -07 000000429 INF: FPGA: Xmit ZDACW 30376\n [Z Motor]
17-03-17 20:55:57.328 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:55:57.328 -07 000000459 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:57.328 -07 000000459 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:55:57.328 -07 000000459 INF: Y Motor: Moving 1340 steps-16
17-03-17 20:55:57.328 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:55:57.338 -07 000000429 INF: FPGA: 'ZDACW 30376' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:55:57.338 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:55:57.348 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:55:57.358 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:57.358 -07 000000424 INF: FPGA: Recv ZDACR 30376
17-03-17 20:55:57.368 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:55:57.368 -07 000000429 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 20:55:57.518 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 20:55:57.518 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:55:57.518 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:57.518 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 20:55:57.518 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 20:55:57.518 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:57.518 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:55:57.528 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:55:57.528 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 20:55:57.528 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:55:57.538 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:55:57.538 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:55:57.718 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 20:55:57.728 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 396 ms overall
17-03-17 20:55:57.758 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:57.768 -07 000000512 INF: FPGA: Recv YRDPOS 129482
17-03-17 20:55:57.768 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:55:57.768 -07 000000459 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:57.768 -07 000000459 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 20:55:57.768 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 20:55:58.718 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:55:58.718 -07 000000382 INF: FPGA: Recv YRDPOS 129482
17-03-17 20:55:58.728 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:58.728 -07 000000459 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:55:58.748 -07 000000459 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:55:58.748 -07 000000459 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:55:58.748 -07 000000459 INF: Y Motor: Moved to 63.2236 after 1436 ms (table move)
17-03-17 20:55:58.748 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139052 mm (DAC = 30376)
17-03-17 20:55:58.748 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:58.748 -07 000000502 INF: FPGA: Recv ZSGSRD 30943
17-03-17 20:55:58.758 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:55:58.758 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:58.758 -07 000000448 INF: FPGA: Recv ZSGSRD 30932
17-03-17 20:55:58.768 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:58.768 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:58.768 -07 000000415 INF: FPGA: Recv ZSGSRD 30934
17-03-17 20:55:58.778 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:58.778 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:58.778 -07 000000608 INF: FPGA: Recv ZSGSRD 30939
17-03-17 20:55:58.788 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:58.788 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:58.788 -07 000000424 INF: FPGA: Recv ZSGSRD 30937
17-03-17 20:55:58.798 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:58.798 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:58.798 -07 000000608 INF: FPGA: Recv ZSGSRD 30947
17-03-17 20:55:58.808 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:58.808 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:58.808 -07 000000424 INF: FPGA: Recv ZSGSRD 30935
17-03-17 20:55:58.818 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:58.818 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:58.818 -07 000000382 INF: FPGA: Recv ZSGSRD 30935
17-03-17 20:55:58.828 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:58.828 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:58.828 -07 000000608 INF: FPGA: Recv ZSGSRD 30931
17-03-17 20:55:58.838 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:58.838 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:58.838 -07 000000501 INF: FPGA: Recv ZSGSRD 30931
17-03-17 20:55:58.848 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:58.848 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:58.848 -07 000000424 INF: FPGA: Recv ZPIEZORD 26950
17-03-17 20:55:58.858 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:58.858 -07 000000576 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.635 V. Piezo Error = -8.8 V.
17-03-17 20:55:58.858 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30936 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30935 (-138.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30931 (-138.2 uncal um), Max = 30947 (-138.3 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:55:58.858 -07 000000576 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30936, posNoise = 11, negNoise = 5
17-03-17 20:55:58.858 -07 000000576 INF: Z Motor: After move to -0.139052, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:58.858 -07 000000576 INF: Z Motor: Settle wait time = 1440 ms, measure time = 103 ms (allowed 150 ms), total time = 1543 ms
17-03-17 20:55:58.858 -07 000000576 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:55:58.908 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 20:55:58.908 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:55:58.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:58.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:58.908 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:58.908 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:55:58.908 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:58.908 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:58.908 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:58.908 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:55:58.918 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:55:58.918 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:55:58.918 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:55:58.918 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:55:58.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:55:58.968 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:55:59.168 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:55:59.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:55:59.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:55:59.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 20:55:59.208 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:55:59.208 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 20:55:59.208 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 20:55:59.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:55:59.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:55:59.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:55:59.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:55:59.308 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:55:59.308 -07 000000608 INF: Autofocus start
17-03-17 20:55:59.308 -07 000000608 INF: MeasureProfile start
17-03-17 20:55:59.308 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:55:59.318 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:55:59.318 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:55:59.328 -07 000000608 INF: MeasureProfile done
17-03-17 20:55:59.328 -07 000000608 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:55:59.328 -07 000000608 INF: Autofocus finished
17-03-17 20:55:59.518 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:55:59.518 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:55:59.518 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.139062778828652. ----------
17-03-17 20:55:59.518 -07 000000610 INF: Cycle	44	Tile	5	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:55:59.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28901, sync = True, waitForSettling = True)
17-03-17 20:55:59.528 -07 000000610 INF: Z Motor: Moving to -0.132300 mm, started at -0.139063 mm, distance = 6.76 um
17-03-17 20:55:59.528 -07 000000610 INF: FPGA: Xmit ZDACW 28901\n [Z Motor]
17-03-17 20:55:59.528 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 20:55:59.538 -07 000000610 INF: FPGA: 'ZDACW 28901' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:55:59.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:55:59.538 -07 000000501 INF: FPGA: Recv ZDACR 28901
17-03-17 20:55:59.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:59.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:55:59.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:59.698 -07 000000576 INF: FPGA: Recv ZSGSRD 29879
17-03-17 20:55:59.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:55:59.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:59.708 -07 000000382 INF: FPGA: Recv ZSGSRD 29883
17-03-17 20:55:59.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:59.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:59.718 -07 000000424 INF: FPGA: Recv ZSGSRD 29885
17-03-17 20:55:59.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:59.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:59.728 -07 000000424 INF: FPGA: Recv ZSGSRD 29886
17-03-17 20:55:59.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:59.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:59.738 -07 000000608 INF: FPGA: Recv ZSGSRD 29888
17-03-17 20:55:59.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:59.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:59.748 -07 000000576 INF: FPGA: Recv ZSGSRD 29884
17-03-17 20:55:59.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:59.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:59.758 -07 000000501 INF: FPGA: Recv ZSGSRD 29879
17-03-17 20:55:59.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:59.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:59.768 -07 000000576 INF: FPGA: Recv ZSGSRD 29887
17-03-17 20:55:59.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:59.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:59.778 -07 000000576 INF: FPGA: Recv ZSGSRD 29879
17-03-17 20:55:59.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:59.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:55:59.788 -07 000000501 INF: FPGA: Recv ZSGSRD 29885
17-03-17 20:55:59.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:59.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:55:59.798 -07 000000501 INF: FPGA: Recv ZPIEZORD 25598
17-03-17 20:55:59.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:55:59.808 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.410 V. Piezo Error = -9.4 V.
17-03-17 20:55:59.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29884 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29884 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29879 (-131.5 uncal um), Max = 29888 (-131.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:55:59.808 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29884, posNoise = 4, negNoise = 5
17-03-17 20:55:59.808 -07 000000610 INF: Z Motor: After move to -0.132300, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:55:59.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:55:59.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:55:59.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:55:59.808 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:55:59.808 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:55:59.808 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:55:59.808 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:55:59.808 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:55:59.808 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:55:59.808 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:55:59.808 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:55:59.808 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:55:59.808 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:55:59.818 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:55:59.818 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:55:59.818 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:55:59.818 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:55:59.818 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:55:59.818 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:55:59.828 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:55:59.828 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:55:59.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 29077 150\n [Camera]
17-03-17 20:56:00.028 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:56:00.448 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:56:00.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:56:00.448 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:00.448 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:00.448 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 20:56:00.458 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:56:00.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:56:00.458 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:00.458 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:00.458 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 20:56:00.648 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29077 807
17-03-17 20:56:00.798 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:56:00.818 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.990831,
17-03-17 20:56:00.838 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:56:00.838 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:56:00.838 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:00.838 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:56:00.838 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 20:56:00.838 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:56:00.838 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:00.848 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:56:00.848 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:56:00.848 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:56:00.998 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1162
17-03-17 20:56:00.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1162
17-03-17 20:56:00.998 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:00.998 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:00.998 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 20:56:00.998 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1162
17-03-17 20:56:00.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1162
17-03-17 20:56:00.998 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:00.998 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:00.998 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 20:56:01.188 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-17 20:56:01.188 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:56:01.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 29077 150' command took 2 ms to send, 1356 ms to get response, and 1359 ms overall
17-03-17 20:56:01.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:56:01.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.132304507655519. ------
17-03-17 20:56:01.198 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:01.198 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13881 mm
17-03-17 20:56:01.198 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:56:01.198 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30323, sync = True, waitForSettling = False)
17-03-17 20:56:01.198 -07 000000415 INF: Z Motor: Moving to -0.138810 mm, started at -0.132305 mm, distance = -6.51 um
17-03-17 20:56:01.198 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 20:56:01.198 -07 000000501 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 20:56:01.198 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:01.208 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:56:01.208 -07 000000415 INF: FPGA: Xmit ZDACW 30323\n [Z Motor]
17-03-17 20:56:01.208 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:56:01.218 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:01.218 -07 000000415 INF: FPGA: 'ZDACW 30323' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:56:01.218 -07 000000424 INF: FPGA: Recv YRDPOS 129483
17-03-17 20:56:01.228 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 20:56:01.228 -07 000000501 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:01.228 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:56:01.228 -07 000000501 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:56:01.228 -07 000000501 INF: Y Motor: Moving 1342 steps-18
17-03-17 20:56:01.238 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:01.238 -07 000000608 INF: FPGA: Recv ZDACR 30323
17-03-17 20:56:01.248 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:56:01.248 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:56:01.248 -07 000000415 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 20:56:01.408 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 20:56:01.408 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 20:56:01.408 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:01.408 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:56:01.408 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:56:01.408 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:01.408 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:01.408 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:56:01.408 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 20:56:01.418 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:56:01.428 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:56:01.428 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 20:56:01.628 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 20:56:01.628 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 397 ms overall
17-03-17 20:56:01.658 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:01.668 -07 000000382 INF: FPGA: Recv YRDPOS 131187
17-03-17 20:56:01.668 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:56:01.668 -07 000000501 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:01.668 -07 000000501 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 20:56:01.668 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.108 mm/sec
17-03-17 20:56:01.828 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:56:01.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:56:02.618 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:02.618 -07 000000576 INF: FPGA: Recv YRDPOS 131188
17-03-17 20:56:02.628 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:02.628 -07 000000501 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:02.648 -07 000000501 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:56:02.648 -07 000000501 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:56:02.648 -07 000000501 INF: Y Motor: Moved to 64.0566 after 1445 ms (table move)
17-03-17 20:56:02.648 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138810 mm (DAC = 30323)
17-03-17 20:56:02.648 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:02.648 -07 000000501 INF: FPGA: Recv ZSGSRD 30897
17-03-17 20:56:02.658 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:56:02.658 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:02.658 -07 000000501 INF: FPGA: Recv ZSGSRD 30898
17-03-17 20:56:02.668 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:02.668 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:02.668 -07 000000501 INF: FPGA: Recv ZSGSRD 30902
17-03-17 20:56:02.678 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:02.678 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:02.678 -07 000000608 INF: FPGA: Recv ZSGSRD 30902
17-03-17 20:56:02.688 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:02.688 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:02.688 -07 000000608 INF: FPGA: Recv ZSGSRD 30895
17-03-17 20:56:02.698 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:02.698 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:02.698 -07 000000608 INF: FPGA: Recv ZSGSRD 30900
17-03-17 20:56:02.708 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:02.708 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:02.708 -07 000000608 INF: FPGA: Recv ZSGSRD 30893
17-03-17 20:56:02.718 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:02.718 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:02.718 -07 000000448 INF: FPGA: Recv ZSGSRD 30900
17-03-17 20:56:02.728 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:02.728 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:02.728 -07 000000382 INF: FPGA: Recv ZSGSRD 30890
17-03-17 20:56:02.738 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:02.738 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:02.738 -07 000000382 INF: FPGA: Recv ZSGSRD 30901
17-03-17 20:56:02.748 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:02.748 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:02.748 -07 000000448 INF: FPGA: Recv ZPIEZORD 26915
17-03-17 20:56:02.758 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:02.758 -07 000000429 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.627 V. Piezo Error = -8.8 V.
17-03-17 20:56:02.758 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30898 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30899 (-138.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30890 (-138.0 uncal um), Max = 30902 (-138.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:56:02.758 -07 000000429 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30898, posNoise = 4, negNoise = 8
17-03-17 20:56:02.758 -07 000000429 INF: Z Motor: After move to -0.138810, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:02.758 -07 000000429 INF: Z Motor: Settle wait time = 1450 ms, measure time = 104 ms (allowed 150 ms), total time = 1554 ms
17-03-17 20:56:02.758 -07 000000429 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:56:02.808 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 20:56:02.808 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:56:02.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:02.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:02.808 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:02.808 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:56:02.808 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:02.808 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:02.808 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:02.808 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:56:02.818 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 20:56:02.818 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:56:02.828 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 20:56:02.828 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 20:56:02.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:56:02.878 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:56:03.078 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:56:03.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:56:03.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:56:03.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) start.
17-03-17 20:56:03.118 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:56:03.118 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 20:56:03.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 285 ms overall
17-03-17 20:56:03.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 20:56:03.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:03.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:56:03.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 20:56:03.218 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:03.218 -07 000000382 INF: Autofocus start
17-03-17 20:56:03.218 -07 000000382 INF: MeasureProfile start
17-03-17 20:56:03.218 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:03.228 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:56:03.228 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:56:03.238 -07 000000382 INF: MeasureProfile done
17-03-17 20:56:03.238 -07 000000382 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 20:56:03.238 -07 000000382 INF: Autofocus finished
17-03-17 20:56:03.428 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:56:03.428 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:56:03.428 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.138818658767265. ----------
17-03-17 20:56:03.428 -07 000000610 INF: Cycle	44	Tile	6	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:56:03.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28818, sync = True, waitForSettling = True)
17-03-17 20:56:03.438 -07 000000610 INF: Z Motor: Moving to -0.131920 mm, started at -0.138819 mm, distance = 6.90 um
17-03-17 20:56:03.438 -07 000000610 INF: FPGA: Xmit ZDACW 28818\n [Z Motor]
17-03-17 20:56:03.438 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:56:03.448 -07 000000610 INF: FPGA: 'ZDACW 28818' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:56:03.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:03.448 -07 000000448 INF: FPGA: Recv ZDACR 28818
17-03-17 20:56:03.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:03.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:56:03.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:03.608 -07 000000433 INF: FPGA: Recv ZSGSRD 29825
17-03-17 20:56:03.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:03.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:03.618 -07 000000448 INF: FPGA: Recv ZSGSRD 29819
17-03-17 20:56:03.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:03.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:03.628 -07 000000433 INF: FPGA: Recv ZSGSRD 29827
17-03-17 20:56:03.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:03.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:03.638 -07 000000429 INF: FPGA: Recv ZSGSRD 29824
17-03-17 20:56:03.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:03.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:03.648 -07 000000429 INF: FPGA: Recv ZSGSRD 29822
17-03-17 20:56:03.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:03.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:03.658 -07 000000433 INF: FPGA: Recv ZSGSRD 29825
17-03-17 20:56:03.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:03.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:03.668 -07 000000382 INF: FPGA: Recv ZSGSRD 29823
17-03-17 20:56:03.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:03.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:03.678 -07 000000429 INF: FPGA: Recv ZSGSRD 29829
17-03-17 20:56:03.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:03.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:03.688 -07 000000448 INF: FPGA: Recv ZSGSRD 29822
17-03-17 20:56:03.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:03.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:03.698 -07 000000433 INF: FPGA: Recv ZSGSRD 29828
17-03-17 20:56:03.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:03.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:03.708 -07 000000429 INF: FPGA: Recv ZPIEZORD 25566
17-03-17 20:56:03.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:03.718 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -9.4 V.
17-03-17 20:56:03.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29824 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29824 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29819 (-131.1 uncal um), Max = 29829 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:56:03.718 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29824, posNoise = 5, negNoise = 5
17-03-17 20:56:03.718 -07 000000610 INF: Z Motor: After move to -0.131920, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:03.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:56:03.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:03.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:03.718 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:56:03.718 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:03.718 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:03.718 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:03.718 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:56:03.718 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:56:03.718 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:03.718 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:56:03.718 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:56:03.718 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:56:03.728 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:56:03.728 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:56:03.728 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:56:03.728 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:56:03.728 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:56:03.728 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:56:03.738 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:56:03.738 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:56:03.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28995 150\n [Camera]
17-03-17 20:56:03.938 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:56:04.358 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:56:04.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:56:04.358 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:04.358 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:04.358 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 20:56:04.358 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:56:04.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:56:04.358 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:04.358 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:04.358 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 20:56:04.548 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28995 807
17-03-17 20:56:04.698 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:56:04.738 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:56:04.738 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:56:04.738 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:04.738 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:56:04.738 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 20:56:04.738 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:04.748 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:56:04.748 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:56:04.748 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:56:04.758 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 20:56:04.908 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:56:04.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:56:04.908 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:05.038 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:56:05.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:56:05.038 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:05.038 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 20:56:05.048 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:05.048 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:05.048 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 20:56:05.098 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1355
17-03-17 20:56:05.098 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:56:05.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28995 150' command took 2 ms to send, 1356 ms to get response, and 1362 ms overall
17-03-17 20:56:05.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:56:05.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.131919054927014. ------
17-03-17 20:56:05.108 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:05.108 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13854 mm
17-03-17 20:56:05.108 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:56:05.108 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 20:56:05.108 -07 000000475 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 20:56:05.108 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30264, sync = True, waitForSettling = False)
17-03-17 20:56:05.108 -07 000000458 INF: Z Motor: Moving to -0.138540 mm, started at -0.131919 mm, distance = -6.62 um
17-03-17 20:56:05.108 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:05.118 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:05.118 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:05.118 -07 000000462 INF: FPGA: Recv YRDPOS 131188
17-03-17 20:56:05.128 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:56:05.128 -07 000000475 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:05.128 -07 000000475 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:56:05.128 -07 000000475 INF: Y Motor: Moving 1338 steps-13
17-03-17 20:56:05.128 -07 000000458 INF: FPGA: Xmit ZDACW 30264\n [Z Motor]
17-03-17 20:56:05.128 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:56:05.138 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:56:05.138 -07 000000458 INF: FPGA: 'ZDACW 30264' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:56:05.148 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:56:05.158 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:05.158 -07 000000502 INF: FPGA: Recv ZDACR 30264
17-03-17 20:56:05.168 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:56:05.168 -07 000000458 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 20:56:05.338 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:56:05.338 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:56:05.428 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:56:05.428 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 20:56:05.428 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:05.428 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:56:05.428 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 20:56:05.428 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 20:56:05.438 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:05.438 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:56:05.438 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 531 ms.
17-03-17 20:56:05.438 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 20:56:05.528 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 20:56:05.528 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 372 ms to get response, and 401 ms overall
17-03-17 20:56:05.568 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:05.568 -07 000000382 INF: FPGA: Recv YRDPOS 132871
17-03-17 20:56:05.578 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:05.578 -07 000000475 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:05.578 -07 000000475 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:56:05.578 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.836 mm, average velocity = 2.085 mm/sec
17-03-17 20:56:06.188 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.98264,
17-03-17 20:56:06.528 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:06.528 -07 000000502 INF: FPGA: Recv YRDPOS 132871
17-03-17 20:56:06.538 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:06.538 -07 000000475 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:06.558 -07 000000475 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:56:06.558 -07 000000475 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:56:06.558 -07 000000475 INF: Y Motor: Moved to 64.8784 after 1452 ms (table move)
17-03-17 20:56:06.558 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138540 mm (DAC = 30264)
17-03-17 20:56:06.568 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:06.568 -07 000000415 INF: FPGA: Recv ZSGSRD 30855
17-03-17 20:56:06.578 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:06.578 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:06.578 -07 000000382 INF: FPGA: Recv ZSGSRD 30856
17-03-17 20:56:06.588 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:06.588 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:06.588 -07 000000415 INF: FPGA: Recv ZSGSRD 30855
17-03-17 20:56:06.598 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:06.598 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:06.598 -07 000000458 INF: FPGA: Recv ZSGSRD 30857
17-03-17 20:56:06.608 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:06.608 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:06.608 -07 000000475 INF: FPGA: Recv ZSGSRD 30852
17-03-17 20:56:06.618 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:06.618 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:06.618 -07 000000541 INF: FPGA: Recv ZSGSRD 30860
17-03-17 20:56:06.628 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:06.628 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:06.628 -07 000000541 INF: FPGA: Recv ZSGSRD 30860
17-03-17 20:56:06.638 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:06.638 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:06.638 -07 000000415 INF: FPGA: Recv ZSGSRD 30857
17-03-17 20:56:06.648 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:06.648 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:06.648 -07 000000541 INF: FPGA: Recv ZSGSRD 30854
17-03-17 20:56:06.658 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:06.658 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:06.658 -07 000000415 INF: FPGA: Recv ZSGSRD 30858
17-03-17 20:56:06.668 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:06.668 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:06.668 -07 000000541 INF: FPGA: Recv ZPIEZORD 26891
17-03-17 20:56:06.678 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:06.678 -07 000000429 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -8.7 V.
17-03-17 20:56:06.678 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30856 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30856 (-137.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30852 (-137.7 uncal um), Max = 30860 (-137.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:56:06.678 -07 000000429 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30856, posNoise = 4, negNoise = 4
17-03-17 20:56:06.678 -07 000000429 INF: Z Motor: After move to -0.138540, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:06.678 -07 000000429 INF: Z Motor: Settle wait time = 1455 ms, measure time = 111 ms (allowed 150 ms), total time = 1566 ms
17-03-17 20:56:06.678 -07 000000429 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 20:56:06.718 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 20:56:06.718 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:56:06.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:06.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:06.718 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:06.718 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:56:06.718 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:06.718 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:06.718 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:06.718 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:56:06.728 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:56:06.728 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:56:06.738 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 20:56:06.738 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 20:56:06.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:56:06.788 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:56:06.828 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:56:06.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:56:06.978 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:56:06.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:56:06.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:56:06.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:56:07.028 -07 000000541 INF: FPGA: Recv @CAMSNAP 284
17-03-17 20:56:07.028 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 20:56:07.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 288 ms overall
17-03-17 20:56:07.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 20:56:07.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:07.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:56:07.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 20:56:07.128 -07 000000415 INF: Autofocus start
17-03-17 20:56:07.128 -07 000000415 INF: MeasureProfile start
17-03-17 20:56:07.128 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:07.128 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:07.138 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:56:07.138 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:56:07.138 -07 000000415 INF: MeasureProfile done
17-03-17 20:56:07.138 -07 000000415 INF: X=19  Z correction [um]=0.06744906
17-03-17 20:56:07.138 -07 000000415 INF: Autofocus finished
17-03-17 20:56:07.338 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:56:07.338 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:56:07.338 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.138548841857311. ----------
17-03-17 20:56:07.338 -07 000000610 INF: Cycle	44	Tile	7	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:56:07.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28791, sync = True, waitForSettling = True)
17-03-17 20:56:07.348 -07 000000610 INF: Z Motor: Moving to -0.131797 mm, started at -0.138549 mm, distance = 6.75 um
17-03-17 20:56:07.348 -07 000000610 INF: FPGA: Xmit ZDACW 28791\n [Z Motor]
17-03-17 20:56:07.348 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:56:07.358 -07 000000610 INF: FPGA: 'ZDACW 28791' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:07.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:07.358 -07 000000429 INF: FPGA: Recv ZDACR 28791
17-03-17 20:56:07.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:07.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:56:07.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:07.518 -07 000000415 INF: FPGA: Recv ZSGSRD 29811
17-03-17 20:56:07.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:07.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:07.528 -07 000000429 INF: FPGA: Recv ZSGSRD 29805
17-03-17 20:56:07.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:07.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:07.538 -07 000000415 INF: FPGA: Recv ZSGSRD 29803
17-03-17 20:56:07.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:07.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:07.548 -07 000000541 INF: FPGA: Recv ZSGSRD 29801
17-03-17 20:56:07.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:56:07.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:07.558 -07 000000429 INF: FPGA: Recv ZSGSRD 29810
17-03-17 20:56:07.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:07.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:07.568 -07 000000541 INF: FPGA: Recv ZSGSRD 29806
17-03-17 20:56:07.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:07.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:07.578 -07 000000512 INF: FPGA: Recv ZSGSRD 29805
17-03-17 20:56:07.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:07.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:07.588 -07 000000541 INF: FPGA: Recv ZSGSRD 29802
17-03-17 20:56:07.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:07.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:07.598 -07 000000512 INF: FPGA: Recv ZSGSRD 29810
17-03-17 20:56:07.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:07.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:07.608 -07 000000512 INF: FPGA: Recv ZSGSRD 29808
17-03-17 20:56:07.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:07.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:07.618 -07 000000512 INF: FPGA: Recv ZPIEZORD 25529
17-03-17 20:56:07.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:07.628 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -9.4 V.
17-03-17 20:56:07.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29806 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29806 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29801 (-131.0 uncal um), Max = 29811 (-131.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:56:07.628 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29806, posNoise = 5, negNoise = 5
17-03-17 20:56:07.628 -07 000000610 INF: Z Motor: After move to -0.131797, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:07.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:56:07.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:07.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:07.628 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:07.628 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:07.628 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:56:07.628 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:07.628 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:56:07.628 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:56:07.628 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:56:07.628 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:56:07.628 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:56:07.628 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:56:07.628 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:56:07.628 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:56:07.628 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:56:07.628 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:56:07.638 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:56:07.638 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 11 ms.
17-03-17 20:56:07.638 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:56:07.638 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 20:56:07.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28968 150\n [Camera]
17-03-17 20:56:07.848 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:56:08.268 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:56:08.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:56:08.268 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:08.268 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:56:08.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:56:08.268 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:08.278 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:08.278 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 20:56:08.278 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:08.278 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 20:56:08.458 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28968 807
17-03-17 20:56:08.608 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:56:08.658 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 20:56:08.658 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:56:08.658 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:08.658 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:56:08.658 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:56:08.658 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:08.658 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:08.658 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:56:08.658 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:08.668 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:56:08.808 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:56:08.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:56:08.818 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:08.928 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:56:08.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:56:08.928 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:08.938 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:08.938 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:08.938 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:56:08.938 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:56:09.008 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-17 20:56:09.008 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:56:09.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28968 150' command took 2 ms to send, 1351 ms to get response, and 1360 ms overall
17-03-17 20:56:09.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:56:09.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.131803419108462. ------
17-03-17 20:56:09.008 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:09.008 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13838 mm
17-03-17 20:56:09.008 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:56:09.008 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:09.018 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:56:09.018 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30230, sync = True, waitForSettling = False)
17-03-17 20:56:09.018 -07 000000415 INF: Z Motor: Moving to -0.138384 mm, started at -0.131803 mm, distance = -6.58 um
17-03-17 20:56:09.018 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 20:56:09.018 -07 000000501 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 20:56:09.018 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:56:09.028 -07 000000415 INF: FPGA: Xmit ZDACW 30230\n [Z Motor]
17-03-17 20:56:09.028 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:56:09.038 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:09.038 -07 000000415 INF: FPGA: 'ZDACW 30230' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:56:09.038 -07 000000433 INF: FPGA: Recv YRDPOS 132871
17-03-17 20:56:09.048 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:56:09.048 -07 000000501 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:09.048 -07 000000501 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:56:09.048 -07 000000501 INF: Y Motor: Moving 1351 steps-29
17-03-17 20:56:09.048 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:09.048 -07 000000576 INF: FPGA: Recv ZDACR 30230
17-03-17 20:56:09.058 -07 000000415 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:56:09.058 -07 000000415 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 20:56:09.058 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:56:09.218 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:56:09.218 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 20:56:09.328 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:56:09.328 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 20:56:09.328 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:09.328 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 20:56:09.328 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:56:09.338 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:09.338 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:09.338 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 20:56:09.338 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:09.348 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 20:56:09.428 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 20:56:09.428 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 20:56:09.468 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:09.468 -07 000000576 INF: FPGA: Recv YRDPOS 134581
17-03-17 20:56:09.478 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:56:09.478 -07 000000501 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:09.478 -07 000000501 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 20:56:09.478 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.844 mm, average velocity = 2.193 mm/sec
17-03-17 20:56:10.428 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:10.428 -07 000000415 INF: FPGA: Recv YRDPOS 134582
17-03-17 20:56:10.438 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:10.438 -07 000000501 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:10.458 -07 000000501 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:56:10.458 -07 000000501 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:56:10.458 -07 000000501 INF: Y Motor: Moved to 65.7139 after 1445 ms (table move)
17-03-17 20:56:10.458 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138384 mm (DAC = 30230)
17-03-17 20:56:10.458 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:10.468 -07 000000502 INF: FPGA: Recv ZSGSRD 30843
17-03-17 20:56:10.478 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:10.478 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:10.478 -07 000000501 INF: FPGA: Recv ZSGSRD 30833
17-03-17 20:56:10.488 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:10.488 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:10.488 -07 000000501 INF: FPGA: Recv ZSGSRD 30829
17-03-17 20:56:10.498 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:10.498 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:10.498 -07 000000502 INF: FPGA: Recv ZSGSRD 30823
17-03-17 20:56:10.508 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:10.508 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:10.508 -07 000000501 INF: FPGA: Recv ZSGSRD 30832
17-03-17 20:56:10.518 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:10.518 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:10.518 -07 000000502 INF: FPGA: Recv ZSGSRD 30827
17-03-17 20:56:10.528 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:10.528 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:10.528 -07 000000501 INF: FPGA: Recv ZSGSRD 30824
17-03-17 20:56:10.538 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:10.538 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:10.538 -07 000000502 INF: FPGA: Recv ZSGSRD 30831
17-03-17 20:56:10.548 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:10.548 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:10.548 -07 000000501 INF: FPGA: Recv ZSGSRD 30832
17-03-17 20:56:10.558 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:10.558 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:10.558 -07 000000502 INF: FPGA: Recv ZSGSRD 30835
17-03-17 20:56:10.568 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:10.568 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:10.568 -07 000000501 INF: FPGA: Recv ZPIEZORD 26874
17-03-17 20:56:10.578 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:10.578 -07 000000626 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.613 V. Piezo Error = -8.7 V.
17-03-17 20:56:10.578 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30831 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30832 (-137.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30823 (-137.5 uncal um), Max = 30843 (-137.7 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:56:10.578 -07 000000626 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30831, posNoise = 12, negNoise = 8
17-03-17 20:56:10.578 -07 000000626 INF: Z Motor: After move to -0.138384, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:10.578 -07 000000626 INF: Z Motor: Settle wait time = 1449 ms, measure time = 112 ms (allowed 150 ms), total time = 1561 ms
17-03-17 20:56:10.578 -07 000000626 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 20:56:10.618 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 20:56:10.618 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:56:10.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:10.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:10.618 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:10.618 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:10.628 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:56:10.628 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:10.628 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:10.628 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:56:10.628 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:56:10.628 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:56:10.638 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 20:56:10.638 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 20:56:10.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:56:10.688 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:56:10.888 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:56:10.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:56:10.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:56:10.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:56:10.928 -07 000000429 INF: FPGA: Recv @CAMSNAP 282
17-03-17 20:56:10.928 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 20:56:10.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 286 ms overall
17-03-17 20:56:11.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:56:11.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:11.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:56:11.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:56:11.028 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:11.738 -07 000000424 INF: Autofocus start
17-03-17 20:56:11.738 -07 000000424 INF: MeasureProfile start
17-03-17 20:56:11.748 -07 000000424 INF: MeasureProfile done
17-03-17 20:56:11.748 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:56:11.748 -07 000000424 INF: Autofocus finished
17-03-17 20:56:11.748 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:11.748 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 716 ms to get response, and 723 ms overall
17-03-17 20:56:11.748 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:56:11.828 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:56:11.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:56:11.958 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:56:11.958 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-17 20:56:11.958 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.138388236553767. ----------
17-03-17 20:56:11.958 -07 000000610 INF: Cycle	44	Tile	8	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:56:11.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28737, sync = True, waitForSettling = True)
17-03-17 20:56:11.958 -07 000000610 INF: Z Motor: Moving to -0.131550 mm, started at -0.138388 mm, distance = 6.84 um
17-03-17 20:56:11.958 -07 000000610 INF: FPGA: Xmit ZDACW 28737\n [Z Motor]
17-03-17 20:56:11.968 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:56:11.968 -07 000000610 INF: FPGA: 'ZDACW 28737' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:56:11.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:11.968 -07 000000429 INF: FPGA: Recv ZDACR 28737
17-03-17 20:56:11.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:56:11.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:56:12.058 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.020806,
17-03-17 20:56:12.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:12.128 -07 000000459 INF: FPGA: Recv ZSGSRD 29761
17-03-17 20:56:12.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:12.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:12.138 -07 000000459 INF: FPGA: Recv ZSGSRD 29760
17-03-17 20:56:12.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:12.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:12.148 -07 000000424 INF: FPGA: Recv ZSGSRD 29773
17-03-17 20:56:12.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:12.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:12.158 -07 000000429 INF: FPGA: Recv ZSGSRD 29760
17-03-17 20:56:12.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:12.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:12.168 -07 000000424 INF: FPGA: Recv ZSGSRD 29769
17-03-17 20:56:12.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:12.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:12.178 -07 000000459 INF: FPGA: Recv ZSGSRD 29770
17-03-17 20:56:12.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:12.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:12.188 -07 000000424 INF: FPGA: Recv ZSGSRD 29761
17-03-17 20:56:12.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:12.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:12.198 -07 000000459 INF: FPGA: Recv ZSGSRD 29763
17-03-17 20:56:12.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:12.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:12.208 -07 000000429 INF: FPGA: Recv ZSGSRD 29768
17-03-17 20:56:12.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:12.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:12.218 -07 000000458 INF: FPGA: Recv ZSGSRD 29765
17-03-17 20:56:12.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:12.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:12.228 -07 000000424 INF: FPGA: Recv ZPIEZORD 25460
17-03-17 20:56:12.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:12.238 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.385 V. Piezo Error = -9.5 V.
17-03-17 20:56:12.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29765 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29764 (-130.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29760 (-130.7 uncal um), Max = 29773 (-130.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:56:12.238 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29765, posNoise = 8, negNoise = 5
17-03-17 20:56:12.238 -07 000000610 INF: Z Motor: After move to -0.131550, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:12.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 20:56:12.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:12.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:12.238 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:12.238 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:12.238 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:56:12.238 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:12.248 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:56:12.248 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:56:12.248 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 20:56:12.248 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:56:12.248 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:56:12.248 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:56:12.248 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:56:12.248 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:56:12.248 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:56:12.248 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:56:12.258 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:56:12.258 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:56:12.258 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:56:12.258 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:56:12.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28914 150\n [Camera]
17-03-17 20:56:12.458 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:56:12.878 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:56:12.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:56:12.888 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:12.888 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:12.888 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:56:12.888 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:56:12.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:56:12.888 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:12.888 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:12.888 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:56:13.078 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28914 807
17-03-17 20:56:13.228 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:56:13.268 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 20:56:13.268 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 20:56:13.268 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:13.268 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 20:56:13.268 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:56:13.268 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:13.268 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:13.268 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:13.268 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:56:13.388 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 497 ms.
17-03-17 20:56:13.428 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1162
17-03-17 20:56:13.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1162
17-03-17 20:56:13.428 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:13.428 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1162
17-03-17 20:56:13.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1162
17-03-17 20:56:13.438 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:13.438 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:13.438 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:56:13.438 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:13.438 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:56:13.618 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-17 20:56:13.618 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:56:13.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28914 150' command took 2 ms to send, 1356 ms to get response, and 1359 ms overall
17-03-17 20:56:13.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:56:13.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.13154002641065. ------
17-03-17 20:56:13.628 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:13.628 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13795 mm
17-03-17 20:56:13.628 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:56:13.628 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:13.628 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 20:56:13.628 -07 000000382 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 20:56:13.628 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30135, sync = True, waitForSettling = False)
17-03-17 20:56:13.628 -07 000000458 INF: Z Motor: Moving to -0.137949 mm, started at -0.131540 mm, distance = -6.41 um
17-03-17 20:56:13.638 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:56:13.638 -07 000000458 INF: FPGA: Xmit ZDACW 30135\n [Z Motor]
17-03-17 20:56:13.648 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:13.658 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:56:13.838 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:56:13.838 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:56:13.838 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:13.838 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:56:13.838 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:56:13.838 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:13.848 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:13.848 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 20:56:13.848 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:13.848 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 20:56:14.738 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:56:14.738 -07 000000429 INF: FPGA: Recv YRDPOS 134582
17-03-17 20:56:14.738 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:56:14.738 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1070 ms to get response, and 1100 ms overall
17-03-17 20:56:14.738 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1080 ms to get response, and 1102 ms overall
17-03-17 20:56:14.738 -07 000000382 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:14.738 -07 000000382 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:56:14.738 -07 000000382 INF: Y Motor: Moving 1342 steps-19
17-03-17 20:56:14.738 -07 000000458 INF: FPGA: 'ZDACW 30135' command took 0 ms to send, 1090 ms to get response, and 1101 ms overall
17-03-17 20:56:14.738 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:56:14.748 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:14.748 -07 000000448 INF: FPGA: Recv ZDACR 30135
17-03-17 20:56:14.758 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:56:14.758 -07 000000458 INF: Z Motor: MoveAbsStepped took 1121 ms (did NOT wait for settling yet))
17-03-17 20:56:15.118 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 20:56:15.118 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-17 20:56:15.148 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:15.158 -07 000000448 INF: FPGA: Recv YRDPOS 136271
17-03-17 20:56:15.158 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:56:15.158 -07 000000382 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:15.158 -07 000000382 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:56:15.158 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.839 mm, average velocity = 2.219 mm/sec
17-03-17 20:56:16.108 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:16.108 -07 000000429 INF: FPGA: Recv YRDPOS 136271
17-03-17 20:56:16.118 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:16.118 -07 000000382 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:16.138 -07 000000382 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:56:16.138 -07 000000382 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:56:16.138 -07 000000382 INF: Y Motor: Moved to 66.5386 after 2506 ms (table move)
17-03-17 20:56:16.138 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137949 mm (DAC = 30135)
17-03-17 20:56:16.138 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:16.148 -07 000000462 INF: FPGA: Recv ZSGSRD 30760
17-03-17 20:56:16.148 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:56:16.148 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:16.148 -07 000000462 INF: FPGA: Recv ZSGSRD 30759
17-03-17 20:56:16.158 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:56:16.158 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:16.158 -07 000000458 INF: FPGA: Recv ZSGSRD 30766
17-03-17 20:56:16.168 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:16.168 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:16.168 -07 000000382 INF: FPGA: Recv ZSGSRD 30762
17-03-17 20:56:16.178 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:16.178 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:16.178 -07 000000462 INF: FPGA: Recv ZSGSRD 30758
17-03-17 20:56:16.188 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:16.188 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:16.188 -07 000000429 INF: FPGA: Recv ZSGSRD 30759
17-03-17 20:56:16.198 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:16.198 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:16.198 -07 000000458 INF: FPGA: Recv ZSGSRD 30764
17-03-17 20:56:16.208 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:16.208 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:16.208 -07 000000448 INF: FPGA: Recv ZSGSRD 30769
17-03-17 20:56:16.218 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:16.218 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:16.218 -07 000000448 INF: FPGA: Recv ZSGSRD 30765
17-03-17 20:56:16.228 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:16.228 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:16.228 -07 000000448 INF: FPGA: Recv ZSGSRD 30758
17-03-17 20:56:16.238 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:16.238 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:16.238 -07 000000448 INF: FPGA: Recv ZPIEZORD 26795
17-03-17 20:56:16.248 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:16.248 -07 000000608 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.598 V. Piezo Error = -8.7 V.
17-03-17 20:56:16.248 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30762 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30761 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30758 (-137.1 uncal um), Max = 30769 (-137.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:56:16.248 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30762, posNoise = 7, negNoise = 4
17-03-17 20:56:16.248 -07 000000608 INF: Z Motor: After move to -0.137949, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:16.248 -07 000000608 INF: Z Motor: Settle wait time = 2509 ms, measure time = 104 ms (allowed 150 ms), total time = 2613 ms
17-03-17 20:56:16.248 -07 000000608 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:56:16.298 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2667 ms
17-03-17 20:56:16.298 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:56:16.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:16.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:16.298 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:16.298 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:16.298 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:56:16.298 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:16.298 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:56:16.298 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:56:16.308 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:56:16.308 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:56:16.308 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:56:16.308 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:56:16.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:56:16.358 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:56:16.558 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:56:16.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:56:16.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:56:16.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:56:16.598 -07 000000458 INF: FPGA: Recv @CAMSNAP 281
17-03-17 20:56:16.598 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 20:56:16.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 20:56:16.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 20:56:16.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:16.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:56:16.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 20:56:16.698 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:16.698 -07 000000458 INF: Autofocus start
17-03-17 20:56:16.698 -07 000000458 INF: MeasureProfile start
17-03-17 20:56:16.698 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:16.708 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:56:16.708 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:56:16.708 -07 000000458 INF: MeasureProfile done
17-03-17 20:56:16.708 -07 000000458 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:56:16.708 -07 000000458 INF: Autofocus finished
17-03-17 20:56:16.828 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:56:16.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:56:16.908 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:56:16.908 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:56:16.908 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.137944965915986. ----------
17-03-17 20:56:16.908 -07 000000610 INF: Cycle	44	Tile	9	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:56:16.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28642, sync = True, waitForSettling = True)
17-03-17 20:56:16.908 -07 000000610 INF: Z Motor: Moving to -0.131115 mm, started at -0.137945 mm, distance = 6.83 um
17-03-17 20:56:16.918 -07 000000610 INF: FPGA: Xmit ZDACW 28642\n [Z Motor]
17-03-17 20:56:16.918 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:56:16.928 -07 000000610 INF: FPGA: 'ZDACW 28642' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:16.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:16.928 -07 000000608 INF: FPGA: Recv ZDACR 28642
17-03-17 20:56:16.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:16.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:56:17.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:17.088 -07 000000608 INF: FPGA: Recv ZSGSRD 29705
17-03-17 20:56:17.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:17.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:17.108 -07 000000448 INF: FPGA: Recv ZSGSRD 29698
17-03-17 20:56:17.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:56:17.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:17.118 -07 000000382 INF: FPGA: Recv ZSGSRD 29693
17-03-17 20:56:17.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:17.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:17.128 -07 000000429 INF: FPGA: Recv ZSGSRD 29707
17-03-17 20:56:17.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:17.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:17.138 -07 000000458 INF: FPGA: Recv ZSGSRD 29705
17-03-17 20:56:17.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:17.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:17.148 -07 000000429 INF: FPGA: Recv ZSGSRD 29700
17-03-17 20:56:17.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:17.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:17.158 -07 000000382 INF: FPGA: Recv ZSGSRD 29698
17-03-17 20:56:17.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:17.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:17.168 -07 000000448 INF: FPGA: Recv ZSGSRD 29702
17-03-17 20:56:17.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:17.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:17.178 -07 000000382 INF: FPGA: Recv ZSGSRD 29704
17-03-17 20:56:17.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:17.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:17.188 -07 000000448 INF: FPGA: Recv ZSGSRD 29694
17-03-17 20:56:17.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:17.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:17.198 -07 000000382 INF: FPGA: Recv ZPIEZORD 25374
17-03-17 20:56:17.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:17.208 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -9.5 V.
17-03-17 20:56:17.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29701 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29701 (-130.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29693 (-130.3 uncal um), Max = 29707 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:56:17.208 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29701, posNoise = 6, negNoise = 8
17-03-17 20:56:17.208 -07 000000610 INF: Z Motor: After move to -0.131115, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:17.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-17 20:56:17.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:17.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:17.208 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:17.208 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:17.208 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:56:17.208 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:56:17.208 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:56:17.208 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:17.208 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:56:17.208 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:56:17.208 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:17.208 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:56:17.218 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:56:17.218 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:56:17.218 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:56:17.218 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:56:17.228 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:56:17.228 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:56:17.228 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 20:56:17.228 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:56:17.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28819 150\n [Camera]
17-03-17 20:56:17.418 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.026244,
17-03-17 20:56:17.428 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:56:17.858 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:56:17.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:56:17.858 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:17.858 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:17.858 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:56:17.858 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:56:17.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:56:17.858 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:17.858 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:17.858 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:56:18.048 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28819 807
17-03-17 20:56:18.198 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:56:18.258 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 20:56:18.258 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 20:56:18.258 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:18.258 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 20:56:18.258 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:56:18.258 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:18.258 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:56:18.258 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 20:56:18.258 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:56:18.268 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 20:56:18.398 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:56:18.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:56:18.508 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:56:18.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:56:18.508 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:18.508 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:18.518 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:18.518 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:56:18.518 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:18.518 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:56:18.588 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-17 20:56:18.588 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:56:18.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28819 150' command took 2 ms to send, 1348 ms to get response, and 1359 ms overall
17-03-17 20:56:18.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:56:18.598 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.131128876833577. ------
17-03-17 20:56:18.598 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:18.598 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13786 mm
17-03-17 20:56:18.598 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:56:18.598 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 20:56:18.598 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30114, sync = True, waitForSettling = False)
17-03-17 20:56:18.598 -07 000000448 INF: Z Motor: Moving to -0.137853 mm, started at -0.131129 mm, distance = -6.72 um
17-03-17 20:56:18.598 -07 000000626 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 20:56:18.598 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:18.608 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:56:18.608 -07 000000448 INF: FPGA: Xmit ZDACW 30114\n [Z Motor]
17-03-17 20:56:18.608 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:56:18.618 -07 000000448 INF: FPGA: 'ZDACW 30114' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 20:56:18.618 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:18.618 -07 000000415 INF: FPGA: Recv YRDPOS 136272
17-03-17 20:56:18.628 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:56:18.628 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 20:56:18.628 -07 000000626 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:18.628 -07 000000626 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:56:18.628 -07 000000626 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:56:18.638 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:18.638 -07 000000502 INF: FPGA: Recv ZDACR 30114
17-03-17 20:56:18.648 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:56:18.648 -07 000000448 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 20:56:18.648 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:56:18.828 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:56:18.828 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 20:56:18.898 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:56:18.898 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:56:18.898 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:18.908 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:56:18.908 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 20:56:18.908 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:56:18.908 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:18.908 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:56:18.908 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 20:56:18.908 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:56:19.018 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 20:56:19.018 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 20:56:19.058 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:19.058 -07 000000382 INF: FPGA: Recv YRDPOS 137977
17-03-17 20:56:19.068 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:56:19.068 -07 000000626 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:19.068 -07 000000626 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 20:56:19.068 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.159 mm/sec
17-03-17 20:56:20.018 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:20.018 -07 000000608 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:56:20.028 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:20.028 -07 000000626 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:20.048 -07 000000626 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:56:20.048 -07 000000626 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:56:20.048 -07 000000626 INF: Y Motor: Moved to 67.3721 after 1447 ms (table move)
17-03-17 20:56:20.048 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137853 mm (DAC = 30114)
17-03-17 20:56:20.048 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:20.058 -07 000000382 INF: FPGA: Recv ZSGSRD 30749
17-03-17 20:56:20.058 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 20:56:20.058 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:20.058 -07 000000382 INF: FPGA: Recv ZSGSRD 30746
17-03-17 20:56:20.068 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:56:20.068 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:20.068 -07 000000415 INF: FPGA: Recv ZSGSRD 30742
17-03-17 20:56:20.078 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:20.078 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:20.078 -07 000000608 INF: FPGA: Recv ZSGSRD 30757
17-03-17 20:56:20.088 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:20.088 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:20.088 -07 000000415 INF: FPGA: Recv ZSGSRD 30754
17-03-17 20:56:20.098 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:20.098 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:20.098 -07 000000626 INF: FPGA: Recv ZSGSRD 30742
17-03-17 20:56:20.108 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:20.108 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:20.108 -07 000000415 INF: FPGA: Recv ZSGSRD 30748
17-03-17 20:56:20.118 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:20.118 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:20.118 -07 000000608 INF: FPGA: Recv ZSGSRD 30744
17-03-17 20:56:20.128 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:20.128 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:20.128 -07 000000608 INF: FPGA: Recv ZSGSRD 30754
17-03-17 20:56:20.138 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:20.138 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:20.138 -07 000000382 INF: FPGA: Recv ZSGSRD 30747
17-03-17 20:56:20.148 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:20.148 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:20.148 -07 000000626 INF: FPGA: Recv ZPIEZORD 26781
17-03-17 20:56:20.158 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:20.158 -07 000000541 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.595 V. Piezo Error = -8.7 V.
17-03-17 20:56:20.158 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30748 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30748 (-137.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30742 (-137.0 uncal um), Max = 30757 (-137.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:56:20.158 -07 000000541 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30748, posNoise = 9, negNoise = 6
17-03-17 20:56:20.158 -07 000000541 INF: Z Motor: After move to -0.137853, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:20.158 -07 000000541 INF: Z Motor: Settle wait time = 1450 ms, measure time = 104 ms (allowed 150 ms), total time = 1554 ms
17-03-17 20:56:20.158 -07 000000541 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:56:20.208 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 20:56:20.208 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:56:20.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:20.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:20.208 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:20.208 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:20.208 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:56:20.208 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:20.208 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:20.208 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:56:20.218 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:56:20.218 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:56:20.218 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:56:20.218 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 20:56:20.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:56:20.268 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:56:20.468 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:56:20.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:56:20.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:56:20.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:56:20.508 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:56:20.508 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 20:56:20.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:56:20.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 20:56:20.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:20.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:56:20.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 20:56:20.608 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:20.608 -07 000000541 INF: Autofocus start
17-03-17 20:56:20.608 -07 000000541 INF: MeasureProfile start
17-03-17 20:56:20.608 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:20.618 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:56:20.618 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:56:20.618 -07 000000541 INF: MeasureProfile done
17-03-17 20:56:20.618 -07 000000541 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:56:20.618 -07 000000541 INF: Autofocus finished
17-03-17 20:56:20.818 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:56:20.818 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:56:20.818 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137855026946001. ----------
17-03-17 20:56:20.818 -07 000000610 INF: Cycle	44	Tile	10	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:56:20.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28639, sync = True, waitForSettling = True)
17-03-17 20:56:20.828 -07 000000610 INF: Z Motor: Moving to -0.131101 mm, started at -0.137855 mm, distance = 6.75 um
17-03-17 20:56:20.828 -07 000000610 INF: FPGA: Xmit ZDACW 28639\n [Z Motor]
17-03-17 20:56:20.828 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:56:20.838 -07 000000610 INF: FPGA: 'ZDACW 28639' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:20.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:20.838 -07 000000382 INF: FPGA: Recv ZDACR 28639
17-03-17 20:56:20.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:20.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:56:20.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:20.998 -07 000000608 INF: FPGA: Recv ZSGSRD 29695
17-03-17 20:56:21.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:21.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:21.008 -07 000000541 INF: FPGA: Recv ZSGSRD 29698
17-03-17 20:56:21.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:21.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:21.018 -07 000000608 INF: FPGA: Recv ZSGSRD 29700
17-03-17 20:56:21.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:21.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:21.028 -07 000000382 INF: FPGA: Recv ZSGSRD 29689
17-03-17 20:56:21.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:21.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:21.038 -07 000000626 INF: FPGA: Recv ZSGSRD 29700
17-03-17 20:56:21.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:56:21.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:21.048 -07 000000608 INF: FPGA: Recv ZSGSRD 29699
17-03-17 20:56:21.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:21.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:21.058 -07 000000608 INF: FPGA: Recv ZSGSRD 29696
17-03-17 20:56:21.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:21.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:21.068 -07 000000415 INF: FPGA: Recv ZSGSRD 29701
17-03-17 20:56:21.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:21.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:21.078 -07 000000608 INF: FPGA: Recv ZSGSRD 29694
17-03-17 20:56:21.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:21.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:21.088 -07 000000541 INF: FPGA: Recv ZSGSRD 29695
17-03-17 20:56:21.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:21.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:21.098 -07 000000382 INF: FPGA: Recv ZPIEZORD 25390
17-03-17 20:56:21.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:21.108 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.370 V. Piezo Error = -9.5 V.
17-03-17 20:56:21.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29697 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29697 (-130.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29689 (-130.3 uncal um), Max = 29701 (-130.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:56:21.108 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29697, posNoise = 4, negNoise = 8
17-03-17 20:56:21.108 -07 000000610 INF: Z Motor: After move to -0.131101, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:21.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 20:56:21.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:21.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:21.108 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:21.108 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:21.108 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:56:21.108 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:21.108 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:56:21.108 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:56:21.108 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:21.108 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:56:21.108 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:56:21.108 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:56:21.108 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:56:21.108 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:56:21.118 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:56:21.118 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:56:21.128 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:56:21.128 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 20:56:21.128 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 20:56:21.128 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:56:21.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28815 150\n [Camera]
17-03-17 20:56:21.328 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:56:21.758 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:56:21.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:56:21.758 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:21.758 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:21.758 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:56:21.758 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:56:21.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:56:21.758 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:21.758 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:21.758 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:56:21.828 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:56:21.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:56:21.948 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28815 807
17-03-17 20:56:22.098 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:56:22.148 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 20:56:22.148 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 20:56:22.148 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:22.158 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:56:22.158 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:56:22.158 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:56:22.158 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 20:56:22.158 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:22.158 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:56:22.168 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 20:56:22.298 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:56:22.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:56:22.298 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:22.408 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:56:22.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:56:22.408 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:22.418 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:22.418 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:56:22.418 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:22.418 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:56:22.488 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-17 20:56:22.488 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:56:22.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28815 150' command took 2 ms to send, 1348 ms to get response, and 1359 ms overall
17-03-17 20:56:22.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:56:22.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.13110317998501. ------
17-03-17 20:56:22.498 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:22.498 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13755 mm
17-03-17 20:56:22.498 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:56:22.498 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 20:56:22.498 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30048, sync = True, waitForSettling = False)
17-03-17 20:56:22.498 -07 000000382 INF: Z Motor: Moving to -0.137551 mm, started at -0.131103 mm, distance = -6.45 um
17-03-17 20:56:22.498 -07 000000626 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 20:56:22.508 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:22.508 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:22.508 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:56:22.508 -07 000000459 INF: FPGA: Recv YRDPOS 137978
17-03-17 20:56:22.518 -07 000000382 INF: FPGA: Xmit ZDACW 30048\n [Z Motor]
17-03-17 20:56:22.518 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:56:22.518 -07 000000626 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:22.518 -07 000000626 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:56:22.518 -07 000000626 INF: Y Motor: Moving 1345 steps-23
17-03-17 20:56:22.518 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:56:22.528 -07 000000382 INF: FPGA: 'ZDACW 30048' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 20:56:22.528 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:56:22.538 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:56:22.548 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:22.548 -07 000000429 INF: FPGA: Recv ZDACR 30048
17-03-17 20:56:22.558 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:56:22.558 -07 000000382 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 20:56:22.728 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:56:22.728 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 20:56:22.788 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.043918,
17-03-17 20:56:22.818 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 20:56:22.818 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 20:56:22.818 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:22.818 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 20:56:22.818 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 20:56:22.818 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:22.818 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:22.818 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:22.828 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 20:56:22.828 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 20:56:22.908 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 20:56:22.908 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:56:22.948 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:22.948 -07 000000424 INF: FPGA: Recv YRDPOS 139683
17-03-17 20:56:22.958 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:56:22.958 -07 000000626 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:22.958 -07 000000626 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 20:56:22.958 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.841 mm, average velocity = 2.123 mm/sec
17-03-17 20:56:23.908 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:23.908 -07 000000415 INF: FPGA: Recv YRDPOS 139683
17-03-17 20:56:23.918 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:23.918 -07 000000626 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:23.938 -07 000000626 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:56:23.938 -07 000000626 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:56:23.938 -07 000000626 INF: Y Motor: Moved to 68.2046 after 1434 ms (table move)
17-03-17 20:56:23.938 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137551 mm (DAC = 30048)
17-03-17 20:56:23.938 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:23.938 -07 000000576 INF: FPGA: Recv ZSGSRD 30698
17-03-17 20:56:23.948 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:56:23.948 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:23.948 -07 000000576 INF: FPGA: Recv ZSGSRD 30702
17-03-17 20:56:23.958 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:23.958 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:23.958 -07 000000576 INF: FPGA: Recv ZSGSRD 30708
17-03-17 20:56:23.968 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:23.968 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:23.968 -07 000000576 INF: FPGA: Recv ZSGSRD 30705
17-03-17 20:56:23.978 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:23.978 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:23.978 -07 000000415 INF: FPGA: Recv ZSGSRD 30703
17-03-17 20:56:23.988 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:23.988 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:23.988 -07 000000415 INF: FPGA: Recv ZSGSRD 30703
17-03-17 20:56:23.998 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:23.998 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:23.998 -07 000000415 INF: FPGA: Recv ZSGSRD 30702
17-03-17 20:56:24.008 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:24.008 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:24.008 -07 000000415 INF: FPGA: Recv ZSGSRD 30697
17-03-17 20:56:24.018 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:24.018 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:24.018 -07 000000415 INF: FPGA: Recv ZSGSRD 30697
17-03-17 20:56:24.028 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:24.028 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:24.028 -07 000000415 INF: FPGA: Recv ZSGSRD 30701
17-03-17 20:56:24.038 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:24.038 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:24.038 -07 000000576 INF: FPGA: Recv ZPIEZORD 26712
17-03-17 20:56:24.048 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:24.048 -07 000000541 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.585 V. Piezo Error = -8.8 V.
17-03-17 20:56:24.048 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30702 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30702 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30697 (-136.7 uncal um), Max = 30708 (-136.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:56:24.048 -07 000000541 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30702, posNoise = 6, negNoise = 5
17-03-17 20:56:24.048 -07 000000541 INF: Z Motor: After move to -0.137551, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:24.048 -07 000000541 INF: Z Motor: Settle wait time = 1437 ms, measure time = 105 ms (allowed 150 ms), total time = 1542 ms
17-03-17 20:56:24.048 -07 000000541 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 20:56:24.098 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 20:56:24.098 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:56:24.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:24.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:24.098 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:24.098 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:24.098 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:56:24.098 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:24.098 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:56:24.098 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:56:24.108 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:56:24.108 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:56:24.118 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:56:24.118 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:56:24.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:56:24.168 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:56:24.368 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:56:24.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:56:24.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:56:24.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:56:24.408 -07 000000541 INF: FPGA: Recv @CAMSNAP 281
17-03-17 20:56:24.408 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 20:56:24.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 20:56:24.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 20:56:24.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:24.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:56:24.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 20:56:24.508 -07 000000626 INF: Autofocus start
17-03-17 20:56:24.508 -07 000000626 INF: MeasureProfile start
17-03-17 20:56:24.508 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:24.508 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:24.518 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:56:24.518 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:56:24.518 -07 000000626 INF: MeasureProfile done
17-03-17 20:56:24.518 -07 000000626 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:56:24.518 -07 000000626 INF: Autofocus finished
17-03-17 20:56:24.718 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:56:24.718 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 20:56:24.718 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.13755951318748. ----------
17-03-17 20:56:24.718 -07 000000610 INF: Cycle	44	Tile	11	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:56:24.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28572, sync = True, waitForSettling = True)
17-03-17 20:56:24.728 -07 000000610 INF: Z Motor: Moving to -0.130794 mm, started at -0.137560 mm, distance = 6.77 um
17-03-17 20:56:24.728 -07 000000610 INF: FPGA: Xmit ZDACW 28572\n [Z Motor]
17-03-17 20:56:24.728 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 20:56:24.738 -07 000000610 INF: FPGA: 'ZDACW 28572' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:24.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:24.738 -07 000000541 INF: FPGA: Recv ZDACR 28572
17-03-17 20:56:24.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:24.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:56:24.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:24.898 -07 000000541 INF: FPGA: Recv ZSGSRD 29655
17-03-17 20:56:24.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:24.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:24.908 -07 000000415 INF: FPGA: Recv ZSGSRD 29653
17-03-17 20:56:24.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:24.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:24.918 -07 000000626 INF: FPGA: Recv ZSGSRD 29655
17-03-17 20:56:24.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:24.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:24.928 -07 000000576 INF: FPGA: Recv ZSGSRD 29657
17-03-17 20:56:24.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:24.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:24.938 -07 000000415 INF: FPGA: Recv ZSGSRD 29647
17-03-17 20:56:24.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:24.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:24.948 -07 000000576 INF: FPGA: Recv ZSGSRD 29645
17-03-17 20:56:24.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:24.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:24.958 -07 000000626 INF: FPGA: Recv ZSGSRD 29649
17-03-17 20:56:24.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:24.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:24.968 -07 000000415 INF: FPGA: Recv ZSGSRD 29651
17-03-17 20:56:24.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:24.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:24.978 -07 000000541 INF: FPGA: Recv ZSGSRD 29653
17-03-17 20:56:24.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:24.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:24.988 -07 000000541 INF: FPGA: Recv ZSGSRD 29647
17-03-17 20:56:24.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:24.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:24.998 -07 000000433 INF: FPGA: Recv ZPIEZORD 25362
17-03-17 20:56:25.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:25.008 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.360 V. Piezo Error = -9.4 V.
17-03-17 20:56:25.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29651 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29652 (-130.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29645 (-130.0 uncal um), Max = 29657 (-130.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:56:25.008 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29651, posNoise = 6, negNoise = 6
17-03-17 20:56:25.008 -07 000000610 INF: Z Motor: After move to -0.130794, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:25.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:56:25.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:25.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:25.008 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:25.008 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:25.008 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:56:25.008 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:25.008 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:56:25.008 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:56:25.008 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:25.008 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:56:25.008 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:56:25.008 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:56:25.008 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:56:25.008 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:56:25.008 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:56:25.008 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:56:25.018 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:56:25.018 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:56:25.018 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:56:25.018 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:56:25.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28749 150\n [Camera]
17-03-17 20:56:25.228 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:56:25.648 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:56:25.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:56:25.648 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:25.648 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:25.648 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:56:25.648 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:56:25.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:56:25.648 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:25.648 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:25.648 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:56:25.838 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28749 807
17-03-17 20:56:25.988 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:56:26.028 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 20:56:26.028 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:56:26.028 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:56:26.028 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:26.028 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:56:26.028 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:26.038 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:56:26.038 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 20:56:26.038 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 20:56:26.048 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:56:26.198 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:56:26.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:56:26.198 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:26.308 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:56:26.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:56:26.308 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:26.318 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:26.318 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:26.318 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:56:26.318 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:56:26.388 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-17 20:56:26.388 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:56:26.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28749 150' command took 2 ms to send, 1353 ms to get response, and 1359 ms overall
17-03-17 20:56:26.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:56:26.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.130807666226489. ------
17-03-17 20:56:26.388 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:26.388 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13739 mm
17-03-17 20:56:26.388 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:56:26.398 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:26.398 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 30013, sync = True, waitForSettling = False)
17-03-17 20:56:26.398 -07 000000433 INF: Z Motor: Moving to -0.137391 mm, started at -0.130808 mm, distance = -6.58 um
17-03-17 20:56:26.398 -07 000000433 INF: FPGA: Xmit ZDACW 30013\n [Z Motor]
17-03-17 20:56:26.398 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 20:56:26.398 -07 000000475 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 20:56:26.398 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:56:26.398 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:56:26.408 -07 000000433 INF: FPGA: 'ZDACW 30013' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:56:26.408 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:56:26.418 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:26.418 -07 000000512 INF: FPGA: Recv YRDPOS 139684
17-03-17 20:56:26.428 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:26.428 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 20:56:26.428 -07 000000475 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:26.428 -07 000000382 INF: FPGA: Recv ZDACR 30013
17-03-17 20:56:26.428 -07 000000475 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:56:26.428 -07 000000475 INF: Y Motor: Moving 1340 steps-16
17-03-17 20:56:26.438 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:56:26.438 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:56:26.438 -07 000000433 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 20:56:26.608 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:56:26.608 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 20:56:26.688 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:56:26.688 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:56:26.688 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:26.688 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 20:56:26.688 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 20:56:26.688 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:26.698 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:56:26.698 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:56:26.698 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-17 20:56:26.708 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:56:26.808 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 20:56:26.808 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 20:56:26.828 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:56:26.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:56:26.848 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:26.858 -07 000000448 INF: FPGA: Recv YRDPOS 141367
17-03-17 20:56:26.858 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:56:26.858 -07 000000475 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:26.858 -07 000000475 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 20:56:26.858 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.838 mm, average velocity = 2.194 mm/sec
17-03-17 20:56:27.808 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:27.808 -07 000000626 INF: FPGA: Recv YRDPOS 141367
17-03-17 20:56:27.818 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:27.818 -07 000000475 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:27.838 -07 000000475 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:56:27.838 -07 000000475 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:56:27.838 -07 000000475 INF: Y Motor: Moved to 69.0269 after 1440 ms (table move)
17-03-17 20:56:27.838 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137391 mm (DAC = 30013)
17-03-17 20:56:27.848 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:27.848 -07 000000448 INF: FPGA: Recv ZSGSRD 30689
17-03-17 20:56:27.858 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 20:56:27.858 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:27.858 -07 000000458 INF: FPGA: Recv ZSGSRD 30672
17-03-17 20:56:27.868 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:27.868 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:27.868 -07 000000541 INF: FPGA: Recv ZSGSRD 30678
17-03-17 20:56:27.878 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:27.878 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:27.878 -07 000000458 INF: FPGA: Recv ZSGSRD 30677
17-03-17 20:56:27.888 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:27.888 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:27.888 -07 000000448 INF: FPGA: Recv ZSGSRD 30676
17-03-17 20:56:27.898 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:27.898 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:27.898 -07 000000458 INF: FPGA: Recv ZSGSRD 30676
17-03-17 20:56:27.908 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:27.908 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:27.908 -07 000000448 INF: FPGA: Recv ZSGSRD 30672
17-03-17 20:56:27.918 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:27.918 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:27.918 -07 000000458 INF: FPGA: Recv ZSGSRD 30681
17-03-17 20:56:27.928 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:27.928 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:27.928 -07 000000541 INF: FPGA: Recv ZSGSRD 30686
17-03-17 20:56:27.938 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:27.938 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:27.938 -07 000000382 INF: FPGA: Recv ZSGSRD 30675
17-03-17 20:56:27.948 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:27.948 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:27.948 -07 000000475 INF: FPGA: Recv ZPIEZORD 26694
17-03-17 20:56:27.958 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:27.958 -07 000000608 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.580 V. Piezo Error = -8.8 V.
17-03-17 20:56:27.958 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30678 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30676 (-136.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30672 (-136.6 uncal um), Max = 30689 (-136.7 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:56:27.958 -07 000000608 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30678, posNoise = 11, negNoise = 6
17-03-17 20:56:27.958 -07 000000608 INF: Z Motor: After move to -0.137391, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:27.958 -07 000000608 INF: Z Motor: Settle wait time = 1445 ms, measure time = 113 ms (allowed 150 ms), total time = 1558 ms
17-03-17 20:56:27.958 -07 000000608 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-17 20:56:27.998 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 20:56:27.998 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:56:27.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:27.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:27.998 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:27.998 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:27.998 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:56:27.998 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:27.998 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:27.998 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:56:28.008 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:56:28.008 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:56:28.018 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:56:28.018 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 20:56:28.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:56:28.058 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:56:28.158 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.007176,
17-03-17 20:56:28.258 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:56:28.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:56:28.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:56:28.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:56:28.298 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:56:28.308 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 20:56:28.308 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 287 ms overall
17-03-17 20:56:28.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:56:28.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:28.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:56:28.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:56:28.408 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:28.408 -07 000000382 INF: Autofocus start
17-03-17 20:56:28.408 -07 000000382 INF: MeasureProfile start
17-03-17 20:56:28.408 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:28.418 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:56:28.418 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:56:28.418 -07 000000382 INF: MeasureProfile done
17-03-17 20:56:28.418 -07 000000382 INF: X=10  Z correction [um]=0.02415557
17-03-17 20:56:28.418 -07 000000382 INF: Autofocus finished
17-03-17 20:56:28.618 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:56:28.618 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:56:28.628 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.137405332096078. ----------
17-03-17 20:56:28.628 -07 000000610 INF: Cycle	44	Tile	12	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:56:28.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28531, sync = True, waitForSettling = True)
17-03-17 20:56:28.628 -07 000000610 INF: Z Motor: Moving to -0.130607 mm, started at -0.137405 mm, distance = 6.80 um
17-03-17 20:56:28.628 -07 000000610 INF: FPGA: Xmit ZDACW 28531\n [Z Motor]
17-03-17 20:56:28.628 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 20:56:28.638 -07 000000610 INF: FPGA: 'ZDACW 28531' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:56:28.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:28.638 -07 000000475 INF: FPGA: Recv ZDACR 28531
17-03-17 20:56:28.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:28.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:56:28.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:28.798 -07 000000458 INF: FPGA: Recv ZSGSRD 29621
17-03-17 20:56:28.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:28.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:28.808 -07 000000475 INF: FPGA: Recv ZSGSRD 29629
17-03-17 20:56:28.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:28.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:28.818 -07 000000458 INF: FPGA: Recv ZSGSRD 29619
17-03-17 20:56:28.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:28.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:28.828 -07 000000459 INF: FPGA: Recv ZSGSRD 29619
17-03-17 20:56:28.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:28.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:28.838 -07 000000459 INF: FPGA: Recv ZSGSRD 29622
17-03-17 20:56:28.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:28.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:28.848 -07 000000415 INF: FPGA: Recv ZSGSRD 29622
17-03-17 20:56:28.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:28.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:28.858 -07 000000459 INF: FPGA: Recv ZSGSRD 29614
17-03-17 20:56:28.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:28.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:28.868 -07 000000459 INF: FPGA: Recv ZSGSRD 29618
17-03-17 20:56:28.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:28.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:28.878 -07 000000415 INF: FPGA: Recv ZSGSRD 29626
17-03-17 20:56:28.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:28.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:28.888 -07 000000429 INF: FPGA: Recv ZSGSRD 29620
17-03-17 20:56:28.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:28.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:28.898 -07 000000415 INF: FPGA: Recv ZPIEZORD 25333
17-03-17 20:56:28.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:28.908 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.354 V. Piezo Error = -9.4 V.
17-03-17 20:56:28.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29621 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29620 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29614 (-129.8 uncal um), Max = 29629 (-129.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:56:28.908 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29621, posNoise = 8, negNoise = 7
17-03-17 20:56:28.908 -07 000000610 INF: Z Motor: After move to -0.130607, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:28.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 20:56:28.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:28.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:28.908 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:28.908 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:28.908 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:56:28.908 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:56:28.908 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:56:28.908 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:28.908 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:56:28.908 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:56:28.908 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:28.908 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:56:28.908 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:56:28.908 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:56:28.908 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 20:56:28.908 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:56:28.918 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:56:28.918 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 20:56:28.918 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 20:56:28.918 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:56:28.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28708 150\n [Camera]
17-03-17 20:56:29.128 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:56:29.548 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:56:29.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:56:29.548 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:29.548 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:29.548 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:56:29.548 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:56:29.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:56:29.548 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:29.558 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:29.558 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:56:29.738 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28708 807
17-03-17 20:56:29.888 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:56:29.928 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 20:56:29.928 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 20:56:29.928 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:29.938 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:29.938 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:56:29.938 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 20:56:29.938 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:56:29.938 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:29.938 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:29.948 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 20:56:30.098 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:56:30.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:56:30.098 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:30.208 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:56:30.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:56:30.208 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:30.218 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:30.218 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:56:30.218 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:30.218 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:56:30.288 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-17 20:56:30.288 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:56:30.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28708 150' command took 2 ms to send, 1354 ms to get response, and 1359 ms overall
17-03-17 20:56:30.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:56:30.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.130614939862236. ------
17-03-17 20:56:30.288 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13710 mm
17-03-17 20:56:30.288 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:56:30.288 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:30.298 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 20:56:30.298 -07 000000459 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 20:56:30.298 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:30.298 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29950, sync = True, waitForSettling = False)
17-03-17 20:56:30.298 -07 000000424 INF: Z Motor: Moving to -0.137102 mm, started at -0.130615 mm, distance = -6.49 um
17-03-17 20:56:30.298 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:30.298 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:56:30.298 -07 000000576 INF: FPGA: Recv YRDPOS 141368
17-03-17 20:56:30.308 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:56:30.308 -07 000000459 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:30.308 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:56:30.308 -07 000000459 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:56:30.308 -07 000000459 INF: Y Motor: Moving 1352 steps-32
17-03-17 20:56:30.318 -07 000000424 INF: FPGA: Xmit ZDACW 29950\n [Z Motor]
17-03-17 20:56:30.318 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 20:56:30.328 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:56:30.328 -07 000000424 INF: FPGA: 'ZDACW 29950' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 20:56:30.338 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:30.338 -07 000000576 INF: FPGA: Recv ZDACR 29950
17-03-17 20:56:30.348 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:56:30.348 -07 000000424 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 20:56:30.508 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:56:30.508 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 20:56:30.608 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 20:56:30.608 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 20:56:30.608 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:30.608 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 20:56:30.608 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 20:56:30.608 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:30.608 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:30.608 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:30.608 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-17 20:56:30.618 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 20:56:30.698 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 20:56:30.698 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 20:56:30.738 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:30.738 -07 000000626 INF: FPGA: Recv YRDPOS 143079
17-03-17 20:56:30.748 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:56:30.748 -07 000000459 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:30.748 -07 000000459 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 20:56:30.748 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.846 mm, average velocity = 2.158 mm/sec
17-03-17 20:56:31.698 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:31.698 -07 000000433 INF: FPGA: Recv YRDPOS 143079
17-03-17 20:56:31.708 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:31.708 -07 000000459 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:31.728 -07 000000459 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:56:31.728 -07 000000459 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:56:31.728 -07 000000459 INF: Y Motor: Moved to 69.8628 after 1432 ms (table move)
17-03-17 20:56:31.728 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137102 mm (DAC = 29950)
17-03-17 20:56:31.728 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:31.728 -07 000000459 INF: FPGA: Recv ZSGSRD 30635
17-03-17 20:56:31.738 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:56:31.738 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:31.738 -07 000000459 INF: FPGA: Recv ZSGSRD 30634
17-03-17 20:56:31.748 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:31.748 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:31.748 -07 000000459 INF: FPGA: Recv ZSGSRD 30637
17-03-17 20:56:31.758 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:31.758 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:31.758 -07 000000459 INF: FPGA: Recv ZSGSRD 30633
17-03-17 20:56:31.768 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:31.768 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:31.768 -07 000000459 INF: FPGA: Recv ZSGSRD 30635
17-03-17 20:56:31.778 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:31.778 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:31.778 -07 000000475 INF: FPGA: Recv ZSGSRD 30629
17-03-17 20:56:31.788 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:31.788 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:31.788 -07 000000475 INF: FPGA: Recv ZSGSRD 30627
17-03-17 20:56:31.798 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:31.798 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:31.798 -07 000000475 INF: FPGA: Recv ZSGSRD 30631
17-03-17 20:56:31.808 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:31.808 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:31.808 -07 000000475 INF: FPGA: Recv ZSGSRD 30623
17-03-17 20:56:31.818 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:31.818 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:31.818 -07 000000475 INF: FPGA: Recv ZSGSRD 30632
17-03-17 20:56:31.828 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:31.828 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:31.828 -07 000000576 INF: FPGA: Recv ZPIEZORD 26653
17-03-17 20:56:31.828 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:56:31.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:56:31.838 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:31.838 -07 000000458 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.570 V. Piezo Error = -8.8 V.
17-03-17 20:56:31.838 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30632 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30632 (-136.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30623 (-136.3 uncal um), Max = 30637 (-136.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 20:56:31.838 -07 000000458 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30632, posNoise = 5, negNoise = 9
17-03-17 20:56:31.838 -07 000000458 INF: Z Motor: After move to -0.137102, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:31.838 -07 000000458 INF: Z Motor: Settle wait time = 1435 ms, measure time = 104 ms (allowed 150 ms), total time = 1539 ms
17-03-17 20:56:31.838 -07 000000458 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 20:56:31.888 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 20:56:31.888 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:56:31.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:31.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:31.888 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:31.888 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:56:31.888 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:31.888 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:31.888 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:31.888 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:56:31.898 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:56:31.898 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:56:31.908 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 20:56:31.908 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 20:56:31.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:56:31.948 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:56:32.148 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:56:32.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:56:32.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:56:32.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:56:32.188 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:56:32.188 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:56:32.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 20:56:32.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 20:56:32.268 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:32.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:56:32.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 20:56:32.288 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:32.288 -07 000000458 INF: Autofocus start
17-03-17 20:56:32.288 -07 000000458 INF: MeasureProfile start
17-03-17 20:56:32.288 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:32.298 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:56:32.298 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:56:32.298 -07 000000458 INF: MeasureProfile done
17-03-17 20:56:32.298 -07 000000458 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:56:32.298 -07 000000458 INF: Autofocus finished
17-03-17 20:56:32.498 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:56:32.498 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:56:32.498 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.137109818337557. ----------
17-03-17 20:56:32.508 -07 000000610 INF: Cycle	44	Tile	13	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:56:32.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28474, sync = True, waitForSettling = True)
17-03-17 20:56:32.508 -07 000000610 INF: Z Motor: Moving to -0.130346 mm, started at -0.137110 mm, distance = 6.76 um
17-03-17 20:56:32.508 -07 000000610 INF: FPGA: Xmit ZDACW 28474\n [Z Motor]
17-03-17 20:56:32.508 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:56:32.518 -07 000000610 INF: FPGA: 'ZDACW 28474' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:56:32.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:32.518 -07 000000576 INF: FPGA: Recv ZDACR 28474
17-03-17 20:56:32.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:32.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:56:32.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:32.678 -07 000000458 INF: FPGA: Recv ZSGSRD 29581
17-03-17 20:56:32.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:32.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:32.688 -07 000000458 INF: FPGA: Recv ZSGSRD 29578
17-03-17 20:56:32.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:32.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:32.698 -07 000000458 INF: FPGA: Recv ZSGSRD 29575
17-03-17 20:56:32.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:32.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:32.708 -07 000000458 INF: FPGA: Recv ZSGSRD 29582
17-03-17 20:56:32.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:32.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:32.718 -07 000000458 INF: FPGA: Recv ZSGSRD 29575
17-03-17 20:56:32.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:32.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:32.728 -07 000000458 INF: FPGA: Recv ZSGSRD 29585
17-03-17 20:56:32.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:32.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:32.738 -07 000000458 INF: FPGA: Recv ZSGSRD 29580
17-03-17 20:56:32.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:32.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:32.748 -07 000000458 INF: FPGA: Recv ZSGSRD 29578
17-03-17 20:56:32.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:32.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:32.758 -07 000000424 INF: FPGA: Recv ZSGSRD 29581
17-03-17 20:56:32.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:32.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:32.768 -07 000000424 INF: FPGA: Recv ZSGSRD 29575
17-03-17 20:56:32.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:32.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:32.778 -07 000000576 INF: FPGA: Recv ZPIEZORD 25314
17-03-17 20:56:32.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:32.788 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.345 V. Piezo Error = -9.4 V.
17-03-17 20:56:32.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29579 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29579 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29575 (-129.5 uncal um), Max = 29585 (-129.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:56:32.788 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29579, posNoise = 6, negNoise = 4
17-03-17 20:56:32.788 -07 000000610 INF: Z Motor: After move to -0.130346, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:32.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:56:32.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:32.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:32.788 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:32.788 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:32.788 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:56:32.788 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:32.788 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:56:32.788 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:56:32.788 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:56:32.788 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:56:32.788 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:56:32.788 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:56:32.798 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:56:32.798 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:56:32.798 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 20:56:32.798 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:56:32.808 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:56:32.808 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:56:32.808 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:56:32.808 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:56:32.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28650 150\n [Camera]
17-03-17 20:56:33.008 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 20:56:33.428 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:56:33.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:56:33.428 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:33.428 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:33.428 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:56:33.438 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:56:33.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:56:33.438 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:33.438 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:33.438 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:56:33.528 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.997626,
17-03-17 20:56:33.618 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28650 807
17-03-17 20:56:33.768 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:56:33.808 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:56:33.808 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:56:33.808 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:33.808 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:56:33.808 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:56:33.808 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:33.808 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:56:33.808 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 20:56:33.818 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:56:33.818 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:56:33.978 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:56:33.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:56:33.978 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:34.088 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:56:34.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:56:34.088 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:34.098 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:34.098 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:56:34.098 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:34.098 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:56:34.168 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-17 20:56:34.168 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:56:34.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28650 150' command took 3 ms to send, 1352 ms to get response, and 1359 ms overall
17-03-17 20:56:34.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:56:34.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.130345122952282. ------
17-03-17 20:56:34.168 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:34.168 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13664 mm
17-03-17 20:56:34.168 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:56:34.178 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:34.178 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 20:56:34.178 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29848, sync = True, waitForSettling = False)
17-03-17 20:56:34.178 -07 000000502 INF: Z Motor: Moving to -0.136635 mm, started at -0.130345 mm, distance = -6.29 um
17-03-17 20:56:34.178 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:56:34.178 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 20:56:34.178 -07 000000424 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 20:56:34.188 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:34.188 -07 000000462 INF: FPGA: Recv YRDPOS 143080
17-03-17 20:56:34.198 -07 000000502 INF: FPGA: Xmit ZDACW 29848\n [Z Motor]
17-03-17 20:56:34.198 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 20:56:34.198 -07 000000424 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:34.198 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 20:56:34.198 -07 000000424 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:56:34.198 -07 000000424 INF: Y Motor: Moving 1343 steps-20
17-03-17 20:56:34.208 -07 000000502 INF: FPGA: 'ZDACW 29848' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:56:34.208 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:56:34.218 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:34.218 -07 000000448 INF: FPGA: Recv ZDACR 29848
17-03-17 20:56:34.228 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:56:34.228 -07 000000502 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 20:56:34.378 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:56:34.378 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 20:56:34.488 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 20:56:34.488 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 20:56:34.488 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:34.488 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 20:56:34.488 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:56:34.488 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:34.498 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:34.498 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-17 20:56:34.498 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:34.498 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 20:56:34.578 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 20:56:34.578 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 383 ms overall
17-03-17 20:56:34.618 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:34.618 -07 000000502 INF: FPGA: Recv YRDPOS 144769
17-03-17 20:56:34.628 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:56:34.628 -07 000000424 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:34.628 -07 000000424 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 20:56:34.628 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.840 mm, average velocity = 2.193 mm/sec
17-03-17 20:56:35.578 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:35.578 -07 000000448 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:56:35.588 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:35.588 -07 000000424 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:35.608 -07 000000424 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:56:35.608 -07 000000424 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:56:35.608 -07 000000424 INF: Y Motor: Moved to 70.6885 after 1430 ms (table move)
17-03-17 20:56:35.608 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136635 mm (DAC = 29848)
17-03-17 20:56:35.608 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:35.608 -07 000000458 INF: FPGA: Recv ZSGSRD 30554
17-03-17 20:56:35.618 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:56:35.618 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:35.618 -07 000000424 INF: FPGA: Recv ZSGSRD 30564
17-03-17 20:56:35.628 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:35.628 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:35.628 -07 000000458 INF: FPGA: Recv ZSGSRD 30560
17-03-17 20:56:35.638 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:35.638 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:35.638 -07 000000502 INF: FPGA: Recv ZSGSRD 30563
17-03-17 20:56:35.648 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:35.648 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:35.648 -07 000000501 INF: FPGA: Recv ZSGSRD 30555
17-03-17 20:56:35.658 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:35.658 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:35.658 -07 000000424 INF: FPGA: Recv ZSGSRD 30551
17-03-17 20:56:35.668 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:35.668 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:35.668 -07 000000501 INF: FPGA: Recv ZSGSRD 30556
17-03-17 20:56:35.678 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:35.678 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:35.678 -07 000000424 INF: FPGA: Recv ZSGSRD 30552
17-03-17 20:56:35.688 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:35.688 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:35.688 -07 000000424 INF: FPGA: Recv ZSGSRD 30563
17-03-17 20:56:35.698 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:35.698 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:35.698 -07 000000424 INF: FPGA: Recv ZSGSRD 30564
17-03-17 20:56:35.708 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:35.708 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:35.708 -07 000000424 INF: FPGA: Recv ZPIEZORD 26581
17-03-17 20:56:35.718 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:35.718 -07 000000512 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.555 V. Piezo Error = -8.8 V.
17-03-17 20:56:35.718 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30558 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30558 (-135.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30551 (-135.8 uncal um), Max = 30564 (-135.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:56:35.718 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30558, posNoise = 6, negNoise = 7
17-03-17 20:56:35.718 -07 000000512 INF: Z Motor: After move to -0.136635, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:35.718 -07 000000512 INF: Z Motor: Settle wait time = 1434 ms, measure time = 103 ms (allowed 150 ms), total time = 1537 ms
17-03-17 20:56:35.718 -07 000000512 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:56:35.768 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 20:56:35.768 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:56:35.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:35.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:35.768 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:35.768 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:35.768 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:56:35.768 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:35.768 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:35.768 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:56:35.778 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:56:35.778 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:56:35.788 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:56:35.788 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 20:56:35.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:56:35.838 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:56:36.038 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:56:36.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:56:36.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:56:36.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:56:36.078 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:56:36.078 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 20:56:36.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 20:56:36.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:56:36.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:36.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:56:36.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:56:36.178 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:36.178 -07 000000424 INF: Autofocus start
17-03-17 20:56:36.178 -07 000000424 INF: MeasureProfile start
17-03-17 20:56:36.178 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:36.188 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:56:36.188 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:56:36.188 -07 000000424 INF: MeasureProfile done
17-03-17 20:56:36.188 -07 000000424 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:56:36.188 -07 000000424 INF: Autofocus finished
17-03-17 20:56:36.388 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:56:36.388 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:56:36.388 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.136634426639066. ----------
17-03-17 20:56:36.388 -07 000000610 INF: Cycle	44	Tile	14	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:56:36.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28356, sync = True, waitForSettling = True)
17-03-17 20:56:36.398 -07 000000610 INF: Z Motor: Moving to -0.129805 mm, started at -0.136634 mm, distance = 6.83 um
17-03-17 20:56:36.398 -07 000000610 INF: FPGA: Xmit ZDACW 28356\n [Z Motor]
17-03-17 20:56:36.398 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 20:56:36.408 -07 000000610 INF: FPGA: 'ZDACW 28356' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:36.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:36.408 -07 000000512 INF: FPGA: Recv ZDACR 28356
17-03-17 20:56:36.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:36.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:56:36.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:36.568 -07 000000512 INF: FPGA: Recv ZSGSRD 29498
17-03-17 20:56:36.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:36.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:36.578 -07 000000501 INF: FPGA: Recv ZSGSRD 29499
17-03-17 20:56:36.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:36.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:36.588 -07 000000501 INF: FPGA: Recv ZSGSRD 29492
17-03-17 20:56:36.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:36.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:36.598 -07 000000501 INF: FPGA: Recv ZSGSRD 29489
17-03-17 20:56:36.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:36.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:36.608 -07 000000501 INF: FPGA: Recv ZSGSRD 29492
17-03-17 20:56:36.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:36.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:36.618 -07 000000424 INF: FPGA: Recv ZSGSRD 29497
17-03-17 20:56:36.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:36.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:36.628 -07 000000501 INF: FPGA: Recv ZSGSRD 29493
17-03-17 20:56:36.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:36.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:36.638 -07 000000424 INF: FPGA: Recv ZSGSRD 29495
17-03-17 20:56:36.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:36.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:36.648 -07 000000424 INF: FPGA: Recv ZSGSRD 29495
17-03-17 20:56:36.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:36.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:36.658 -07 000000501 INF: FPGA: Recv ZSGSRD 29498
17-03-17 20:56:36.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:36.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:36.668 -07 000000501 INF: FPGA: Recv ZPIEZORD 25209
17-03-17 20:56:36.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:36.678 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -9.4 V.
17-03-17 20:56:36.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29495 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29495 (-129.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29489 (-129.0 uncal um), Max = 29499 (-129.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:56:36.678 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29495, posNoise = 4, negNoise = 6
17-03-17 20:56:36.678 -07 000000610 INF: Z Motor: After move to -0.129805, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:36.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:56:36.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:36.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:36.678 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:36.678 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:36.678 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:56:36.678 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:56:36.678 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:56:36.678 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:36.678 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:56:36.678 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:56:36.678 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:36.678 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:56:36.678 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:56:36.678 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:56:36.688 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:56:36.688 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:56:36.688 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:56:36.688 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:56:36.698 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:56:36.698 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:56:36.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28532 150\n [Camera]
17-03-17 20:56:36.828 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:56:36.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:56:36.898 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:56:37.318 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:56:37.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:56:37.318 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:37.318 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:37.318 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:56:37.318 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:56:37.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:56:37.318 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:37.318 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:37.318 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:56:37.508 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28532 807
17-03-17 20:56:37.658 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:56:37.708 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 20:56:37.708 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:56:37.708 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:37.708 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 20:56:37.708 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 20:56:37.708 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:37.708 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:37.708 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:56:37.708 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:56:37.718 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 20:56:37.868 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:56:37.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:56:37.868 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:37.988 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:56:37.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:56:37.988 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:37.988 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:37.988 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:56:37.988 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:37.988 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:56:38.058 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-17 20:56:38.058 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:56:38.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28532 150' command took 2 ms to send, 1353 ms to get response, and 1359 ms overall
17-03-17 20:56:38.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:56:38.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.129805489132374. ------
17-03-17 20:56:38.058 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:38.058 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13621 mm
17-03-17 20:56:38.058 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:56:38.068 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:38.068 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 20:56:38.068 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29755, sync = True, waitForSettling = False)
17-03-17 20:56:38.068 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:56:38.068 -07 000000501 INF: Z Motor: Moving to -0.136210 mm, started at -0.129805 mm, distance = -6.40 um
17-03-17 20:56:38.068 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 20:56:38.068 -07 000000429 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 20:56:38.078 -07 000000501 INF: FPGA: Xmit ZDACW 29755\n [Z Motor]
17-03-17 20:56:38.078 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:56:38.088 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:38.088 -07 000000501 INF: FPGA: 'ZDACW 29755' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 20:56:38.088 -07 000000424 INF: FPGA: Recv YRDPOS 144770
17-03-17 20:56:38.098 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 20:56:38.098 -07 000000429 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:38.098 -07 000000429 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:56:38.098 -07 000000429 INF: Y Motor: Moving 1351 steps-30
17-03-17 20:56:38.098 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:38.098 -07 000000424 INF: FPGA: Recv ZDACR 29755
17-03-17 20:56:38.108 -07 000000501 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:56:38.108 -07 000000501 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 20:56:38.108 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:56:38.268 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:56:38.268 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:56:38.368 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 20:56:38.368 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:56:38.368 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:38.368 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 20:56:38.378 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 20:56:38.378 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:38.378 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:38.378 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:38.378 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-17 20:56:38.388 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:56:38.488 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 20:56:38.488 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 20:56:38.518 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:38.528 -07 000000448 INF: FPGA: Recv YRDPOS 146470
17-03-17 20:56:38.528 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:56:38.528 -07 000000429 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:38.528 -07 000000429 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 20:56:38.528 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.844 mm, average velocity = 2.170 mm/sec
17-03-17 20:56:38.898 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.986717,
17-03-17 20:56:39.478 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:39.738 -07 000000626 INF: FPGA: Recv YRDPOS 146470
17-03-17 20:56:39.738 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 250 ms to get response, and 260 ms overall
17-03-17 20:56:39.738 -07 000000429 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:39.758 -07 000000429 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:56:39.758 -07 000000429 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:56:39.758 -07 000000429 INF: Y Motor: Moved to 71.5186 after 1693 ms (table move)
17-03-17 20:56:39.758 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136210 mm (DAC = 29755)
17-03-17 20:56:39.768 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:39.768 -07 000000512 INF: FPGA: Recv ZSGSRD 30500
17-03-17 20:56:39.778 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:39.778 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:39.778 -07 000000429 INF: FPGA: Recv ZSGSRD 30488
17-03-17 20:56:39.788 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:39.788 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:39.788 -07 000000424 INF: FPGA: Recv ZSGSRD 30488
17-03-17 20:56:39.798 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:39.798 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:39.798 -07 000000433 INF: FPGA: Recv ZSGSRD 30493
17-03-17 20:56:39.808 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:39.808 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:39.808 -07 000000626 INF: FPGA: Recv ZSGSRD 30495
17-03-17 20:56:39.818 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:39.818 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:39.818 -07 000000541 INF: FPGA: Recv ZSGSRD 30498
17-03-17 20:56:39.828 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:39.828 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:39.828 -07 000000512 INF: FPGA: Recv ZSGSRD 30488
17-03-17 20:56:39.838 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:39.838 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:39.838 -07 000000541 INF: FPGA: Recv ZSGSRD 30497
17-03-17 20:56:39.848 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:39.848 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:39.848 -07 000000429 INF: FPGA: Recv ZSGSRD 30495
17-03-17 20:56:39.858 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:39.858 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:39.858 -07 000000433 INF: FPGA: Recv ZSGSRD 30492
17-03-17 20:56:39.868 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:39.868 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:39.868 -07 000000576 INF: FPGA: Recv ZPIEZORD 26521
17-03-17 20:56:39.878 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:39.878 -07 000000382 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.540 V. Piezo Error = -8.7 V.
17-03-17 20:56:39.878 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30493 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30494 (-135.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30488 (-135.4 uncal um), Max = 30500 (-135.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 20:56:39.878 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30493, posNoise = 7, negNoise = 5
17-03-17 20:56:39.878 -07 000000382 INF: Z Motor: After move to -0.136210, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:39.878 -07 000000382 INF: Z Motor: Settle wait time = 1697 ms, measure time = 112 ms (allowed 150 ms), total time = 1809 ms
17-03-17 20:56:39.878 -07 000000382 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 20:56:39.918 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1851 ms
17-03-17 20:56:39.918 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:56:39.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:39.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:39.918 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:39.918 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:39.918 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:56:39.918 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:39.918 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:39.918 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:56:39.918 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:56:39.918 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:56:39.938 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:56:39.938 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:56:39.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:56:39.988 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:56:40.188 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:56:40.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:56:40.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:56:40.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:56:40.228 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:56:40.228 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 20:56:40.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 20:56:40.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 20:56:40.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:40.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:56:40.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 20:56:40.328 -07 000000433 INF: Autofocus start
17-03-17 20:56:40.328 -07 000000433 INF: MeasureProfile start
17-03-17 20:56:40.328 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:40.328 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:40.338 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:56:40.338 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:56:40.348 -07 000000433 INF: MeasureProfile done
17-03-17 20:56:40.348 -07 000000433 INF: X=-22  Z correction [um]=-0.110495
17-03-17 20:56:40.348 -07 000000433 INF: Autofocus finished
17-03-17 20:56:40.538 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:56:40.538 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:56:40.538 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.136216852849852. ----------
17-03-17 20:56:40.538 -07 000000610 INF: Cycle	44	Tile	15	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:56:40.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28243, sync = True, waitForSettling = True)
17-03-17 20:56:40.548 -07 000000610 INF: Z Motor: Moving to -0.129288 mm, started at -0.136217 mm, distance = 6.93 um
17-03-17 20:56:40.548 -07 000000610 INF: FPGA: Xmit ZDACW 28243\n [Z Motor]
17-03-17 20:56:40.548 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 20:56:40.558 -07 000000610 INF: FPGA: 'ZDACW 28243' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:56:40.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:40.558 -07 000000424 INF: FPGA: Recv ZDACR 28243
17-03-17 20:56:40.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:40.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:56:40.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:40.718 -07 000000429 INF: FPGA: Recv ZSGSRD 29417
17-03-17 20:56:40.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:40.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:40.728 -07 000000429 INF: FPGA: Recv ZSGSRD 29416
17-03-17 20:56:40.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:40.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:40.738 -07 000000382 INF: FPGA: Recv ZSGSRD 29415
17-03-17 20:56:40.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:40.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:40.748 -07 000000382 INF: FPGA: Recv ZSGSRD 29414
17-03-17 20:56:40.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:40.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:40.758 -07 000000429 INF: FPGA: Recv ZSGSRD 29414
17-03-17 20:56:40.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:40.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:40.768 -07 000000382 INF: FPGA: Recv ZSGSRD 29422
17-03-17 20:56:40.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:40.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:40.778 -07 000000512 INF: FPGA: Recv ZSGSRD 29417
17-03-17 20:56:40.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:40.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:40.788 -07 000000501 INF: FPGA: Recv ZSGSRD 29415
17-03-17 20:56:40.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:40.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:40.798 -07 000000626 INF: FPGA: Recv ZSGSRD 29414
17-03-17 20:56:40.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:40.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:40.808 -07 000000626 INF: FPGA: Recv ZSGSRD 29418
17-03-17 20:56:40.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:40.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:40.818 -07 000000501 INF: FPGA: Recv ZPIEZORD 25138
17-03-17 20:56:40.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:40.828 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.310 V. Piezo Error = -9.4 V.
17-03-17 20:56:40.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29416 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29416 (-128.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29414 (-128.5 uncal um), Max = 29422 (-128.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 20:56:40.828 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29416, posNoise = 6, negNoise = 2
17-03-17 20:56:40.828 -07 000000610 INF: Z Motor: After move to -0.129288, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:40.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:56:40.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:40.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:40.828 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:40.828 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:56:40.828 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:40.828 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:56:40.828 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:40.828 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:56:40.828 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:40.828 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:56:40.828 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:56:40.828 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:56:40.838 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:56:40.838 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:56:40.838 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:56:40.838 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:56:40.838 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:56:40.838 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:56:40.848 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:56:40.848 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:56:40.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28420 150\n [Camera]
17-03-17 20:56:41.048 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:56:41.468 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:56:41.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:56:41.468 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:41.468 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:41.468 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:56:41.468 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:56:41.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:56:41.468 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:41.468 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:41.468 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:56:41.658 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28420 807
17-03-17 20:56:41.808 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:56:41.828 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:56:41.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:56:41.848 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:56:41.848 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:56:41.848 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:41.848 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 20:56:41.848 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 20:56:41.848 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:41.858 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:56:41.858 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:56:41.858 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:56:41.858 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 20:56:42.018 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:56:42.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:56:42.018 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:42.128 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:56:42.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:56:42.128 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:42.138 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:42.138 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:42.138 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:56:42.138 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:56:42.208 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-17 20:56:42.208 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:56:42.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28420 150' command took 2 ms to send, 1355 ms to get response, and 1362 ms overall
17-03-17 20:56:42.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:56:42.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.129297976373175. ------
17-03-17 20:56:42.218 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:42.218 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13548 mm
17-03-17 20:56:42.218 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:56:42.218 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:42.218 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 20:56:42.218 -07 000000424 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 20:56:42.218 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29596, sync = True, waitForSettling = False)
17-03-17 20:56:42.218 -07 000000512 INF: Z Motor: Moving to -0.135482 mm, started at -0.129298 mm, distance = -6.18 um
17-03-17 20:56:42.228 -07 000000512 INF: FPGA: Xmit ZDACW 29596\n [Z Motor]
17-03-17 20:56:42.228 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:42.228 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 20:56:42.238 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:42.238 -07 000000512 INF: FPGA: 'ZDACW 29596' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 20:56:42.238 -07 000000626 INF: FPGA: Recv YRDPOS 146470
17-03-17 20:56:42.248 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:56:42.248 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 20:56:42.248 -07 000000424 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:42.248 -07 000000424 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:56:42.248 -07 000000424 INF: Y Motor: Moving 1350 steps-29
17-03-17 20:56:42.258 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:42.258 -07 000000382 INF: FPGA: Recv ZDACR 29596
17-03-17 20:56:42.268 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:56:42.268 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:56:42.268 -07 000000512 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 20:56:42.448 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:56:42.448 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:56:42.518 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 20:56:42.518 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 20:56:42.518 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:42.518 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:56:42.518 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:56:42.518 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 20:56:42.518 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:42.518 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:56:42.518 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-17 20:56:42.528 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:56:42.638 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 20:56:42.638 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:56:42.678 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:42.678 -07 000000462 INF: FPGA: Recv YRDPOS 148171
17-03-17 20:56:42.688 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:56:42.688 -07 000000424 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:42.688 -07 000000424 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 20:56:42.688 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.844 mm, average velocity = 2.131 mm/sec
17-03-17 20:56:43.638 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:43.638 -07 000000541 INF: FPGA: Recv YRDPOS 148171
17-03-17 20:56:43.648 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:43.648 -07 000000424 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:43.668 -07 000000424 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:56:43.668 -07 000000424 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:56:43.668 -07 000000424 INF: Y Motor: Moved to 72.3491 after 1449 ms (table move)
17-03-17 20:56:43.668 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135482 mm (DAC = 29596)
17-03-17 20:56:43.668 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:43.678 -07 000000448 INF: FPGA: Recv ZSGSRD 30381
17-03-17 20:56:43.678 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:56:43.678 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:43.678 -07 000000429 INF: FPGA: Recv ZSGSRD 30385
17-03-17 20:56:43.688 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:43.688 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:43.688 -07 000000429 INF: FPGA: Recv ZSGSRD 30386
17-03-17 20:56:43.698 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:43.698 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:43.698 -07 000000429 INF: FPGA: Recv ZSGSRD 30383
17-03-17 20:56:43.708 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:43.708 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:43.708 -07 000000429 INF: FPGA: Recv ZSGSRD 30379
17-03-17 20:56:43.718 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:43.718 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:43.718 -07 000000429 INF: FPGA: Recv ZSGSRD 30380
17-03-17 20:56:43.728 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:43.728 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:43.728 -07 000000512 INF: FPGA: Recv ZSGSRD 30376
17-03-17 20:56:43.738 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:43.738 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:43.738 -07 000000512 INF: FPGA: Recv ZSGSRD 30374
17-03-17 20:56:43.748 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:43.748 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:43.748 -07 000000512 INF: FPGA: Recv ZSGSRD 30376
17-03-17 20:56:43.758 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:43.758 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:43.758 -07 000000512 INF: FPGA: Recv ZSGSRD 30383
17-03-17 20:56:43.768 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:43.768 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:43.768 -07 000000512 INF: FPGA: Recv ZPIEZORD 26406
17-03-17 20:56:43.778 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:43.778 -07 000000576 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.516 V. Piezo Error = -8.8 V.
17-03-17 20:56:43.778 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30380 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30380 (-134.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30374 (-134.7 uncal um), Max = 30386 (-134.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 20:56:43.778 -07 000000576 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30380, posNoise = 6, negNoise = 6
17-03-17 20:56:43.778 -07 000000576 INF: Z Motor: After move to -0.135482, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:43.778 -07 000000576 INF: Z Motor: Settle wait time = 1452 ms, measure time = 103 ms (allowed 150 ms), total time = 1555 ms
17-03-17 20:56:43.778 -07 000000576 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:56:43.828 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 20:56:43.828 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:56:43.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:43.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:43.828 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:43.828 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:43.828 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:56:43.828 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:43.828 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:43.828 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:56:43.838 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:56:43.838 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:56:43.848 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 20:56:43.848 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 20:56:43.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:56:43.888 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:56:44.088 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:56:44.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:56:44.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:56:44.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:56:44.128 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:56:44.128 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 20:56:44.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 20:56:44.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 20:56:44.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:44.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:56:44.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 20:56:44.228 -07 000000501 INF: Autofocus start
17-03-17 20:56:44.228 -07 000000501 INF: MeasureProfile start
17-03-17 20:56:44.228 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:44.228 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:44.238 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:56:44.238 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:56:44.238 -07 000000501 INF: MeasureProfile done
17-03-17 20:56:44.238 -07 000000501 INF: X=27  Z correction [um]=0.1059322
17-03-17 20:56:44.238 -07 000000501 INF: Autofocus finished
17-03-17 20:56:44.268 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.971733,
17-03-17 20:56:44.438 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:56:44.438 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 20:56:44.438 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.135490916877833. ----------
17-03-17 20:56:44.438 -07 000000610 INF: Cycle	44	Tile	16	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:56:44.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28132, sync = True, waitForSettling = True)
17-03-17 20:56:44.448 -07 000000610 INF: Z Motor: Moving to -0.128780 mm, started at -0.135491 mm, distance = 6.71 um
17-03-17 20:56:44.448 -07 000000610 INF: FPGA: Xmit ZDACW 28132\n [Z Motor]
17-03-17 20:56:44.448 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 20:56:44.458 -07 000000610 INF: FPGA: 'ZDACW 28132' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:44.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:44.458 -07 000000462 INF: FPGA: Recv ZDACR 28132
17-03-17 20:56:44.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:44.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:56:44.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:44.618 -07 000000448 INF: FPGA: Recv ZSGSRD 29338
17-03-17 20:56:44.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:44.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:44.628 -07 000000462 INF: FPGA: Recv ZSGSRD 29337
17-03-17 20:56:44.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:44.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:44.638 -07 000000429 INF: FPGA: Recv ZSGSRD 29340
17-03-17 20:56:44.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:44.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:44.648 -07 000000448 INF: FPGA: Recv ZSGSRD 29337
17-03-17 20:56:44.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:44.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:44.658 -07 000000429 INF: FPGA: Recv ZSGSRD 29338
17-03-17 20:56:44.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:44.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:44.668 -07 000000448 INF: FPGA: Recv ZSGSRD 29329
17-03-17 20:56:44.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:44.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:44.678 -07 000000429 INF: FPGA: Recv ZSGSRD 29341
17-03-17 20:56:44.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:44.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:44.688 -07 000000382 INF: FPGA: Recv ZSGSRD 29331
17-03-17 20:56:44.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:56:44.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:44.698 -07 000000501 INF: FPGA: Recv ZSGSRD 29334
17-03-17 20:56:44.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:44.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:44.708 -07 000000576 INF: FPGA: Recv ZSGSRD 29336
17-03-17 20:56:44.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:44.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:44.718 -07 000000501 INF: FPGA: Recv ZPIEZORD 25045
17-03-17 20:56:44.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:44.728 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.293 V. Piezo Error = -9.4 V.
17-03-17 20:56:44.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29336 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29337 (-128.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29329 (-128.0 uncal um), Max = 29341 (-128.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:56:44.728 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29336, posNoise = 5, negNoise = 7
17-03-17 20:56:44.728 -07 000000610 INF: Z Motor: After move to -0.128780, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:44.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 20:56:44.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:44.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:44.728 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:44.728 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:44.728 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:56:44.728 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:56:44.728 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:56:44.728 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:44.728 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 20:56:44.728 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:56:44.728 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:44.728 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:56:44.738 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 20:56:44.738 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:56:44.738 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:56:44.738 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:56:44.748 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 20:56:44.748 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 20:56:44.748 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 20:56:44.748 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 20:56:44.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28309 150\n [Camera]
17-03-17 20:56:44.958 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:56:45.378 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:56:45.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:56:45.378 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:45.378 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:45.378 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:56:45.378 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:56:45.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:56:45.378 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:45.378 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:45.378 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:56:45.568 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28309 807
17-03-17 20:56:45.718 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:56:45.778 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 20:56:45.778 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:56:45.778 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:45.778 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 20:56:45.778 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:56:45.778 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:45.778 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:45.778 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:45.778 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 20:56:45.788 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 20:56:45.918 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:56:45.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:56:45.928 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:46.028 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:56:46.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:56:46.028 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:46.038 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:46.038 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:56:46.038 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:46.038 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:56:46.118 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1353
17-03-17 20:56:46.118 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:56:46.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28309 150' command took 2 ms to send, 1351 ms to get response, and 1360 ms overall
17-03-17 20:56:46.118 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:56:46.118 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.128784039401834. ------
17-03-17 20:56:46.118 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:46.118 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13529 mm
17-03-17 20:56:46.118 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:56:46.118 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 20:56:46.118 -07 000000501 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 20:56:46.118 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:46.128 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:56:46.128 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:46.128 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 29555, sync = True, waitForSettling = False)
17-03-17 20:56:46.128 -07 000000433 INF: Z Motor: Moving to -0.135294 mm, started at -0.128784 mm, distance = -6.51 um
17-03-17 20:56:46.128 -07 000000462 INF: FPGA: Recv YRDPOS 148172
17-03-17 20:56:46.138 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 20:56:46.138 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:56:46.138 -07 000000501 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:46.138 -07 000000501 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:56:46.138 -07 000000501 INF: Y Motor: Moving 1349 steps-28
17-03-17 20:56:46.148 -07 000000433 INF: FPGA: Xmit ZDACW 29555\n [Z Motor]
17-03-17 20:56:46.148 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:56:46.158 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:56:46.158 -07 000000433 INF: FPGA: 'ZDACW 29555' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:56:46.168 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:46.168 -07 000000448 INF: FPGA: Recv ZDACR 29555
17-03-17 20:56:46.178 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 20:56:46.178 -07 000000433 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 20:56:46.338 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:56:46.338 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 20:56:46.438 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 20:56:46.438 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 20:56:46.438 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:46.438 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 20:56:46.438 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 20:56:46.438 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:46.438 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:46.438 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-17 20:56:46.438 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:46.448 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 20:56:46.528 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 20:56:46.528 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 20:56:46.568 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:46.568 -07 000000424 INF: FPGA: Recv YRDPOS 149864
17-03-17 20:56:46.578 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:56:46.578 -07 000000501 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:46.578 -07 000000501 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 20:56:46.578 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.843 mm, average velocity = 2.152 mm/sec
17-03-17 20:56:46.828 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:56:46.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:56:47.528 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:47.528 -07 000000382 INF: FPGA: Recv YRDPOS 149864
17-03-17 20:56:47.538 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:47.538 -07 000000501 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:47.558 -07 000000501 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:56:47.558 -07 000000501 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:56:47.558 -07 000000501 INF: Y Motor: Moved to 73.1758 after 1434 ms (table move)
17-03-17 20:56:47.558 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135294 mm (DAC = 29555)
17-03-17 20:56:47.558 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:47.558 -07 000000512 INF: FPGA: Recv ZSGSRD 30356
17-03-17 20:56:47.568 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 20:56:47.568 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:47.568 -07 000000576 INF: FPGA: Recv ZSGSRD 30353
17-03-17 20:56:47.578 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:47.578 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:47.578 -07 000000512 INF: FPGA: Recv ZSGSRD 30343
17-03-17 20:56:47.588 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:47.588 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:47.588 -07 000000424 INF: FPGA: Recv ZSGSRD 30356
17-03-17 20:56:47.598 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:47.598 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:47.598 -07 000000382 INF: FPGA: Recv ZSGSRD 30355
17-03-17 20:56:47.608 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:47.608 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:47.608 -07 000000448 INF: FPGA: Recv ZSGSRD 30352
17-03-17 20:56:47.618 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:47.618 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:47.618 -07 000000382 INF: FPGA: Recv ZSGSRD 30352
17-03-17 20:56:47.628 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:47.628 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:47.628 -07 000000462 INF: FPGA: Recv ZSGSRD 30347
17-03-17 20:56:47.638 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:47.638 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:47.638 -07 000000382 INF: FPGA: Recv ZSGSRD 30345
17-03-17 20:56:47.648 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:47.648 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:47.648 -07 000000424 INF: FPGA: Recv ZSGSRD 30348
17-03-17 20:56:47.658 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:47.658 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:47.658 -07 000000433 INF: FPGA: Recv ZPIEZORD 26414
17-03-17 20:56:47.668 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:47.668 -07 000000541 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.510 V. Piezo Error = -8.7 V.
17-03-17 20:56:47.668 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30351 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30352 (-134.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30343 (-134.5 uncal um), Max = 30356 (-134.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:56:47.668 -07 000000541 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30351, posNoise = 5, negNoise = 8
17-03-17 20:56:47.668 -07 000000541 INF: Z Motor: After move to -0.135294, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:47.668 -07 000000541 INF: Z Motor: Settle wait time = 1436 ms, measure time = 103 ms (allowed 150 ms), total time = 1539 ms
17-03-17 20:56:47.668 -07 000000541 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 20:56:47.718 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 20:56:47.718 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:56:47.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:47.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:47.718 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:47.718 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:56:47.718 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:47.718 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:47.728 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:47.728 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:56:47.728 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:56:47.728 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:56:47.738 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:56:47.738 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 20:56:47.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:56:47.788 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:56:47.988 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:56:47.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:56:47.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:56:47.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:56:48.028 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:56:48.028 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 20:56:48.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 20:56:48.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 20:56:48.118 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:48.118 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:56:48.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 20:56:48.128 -07 000000501 INF: Autofocus start
17-03-17 20:56:48.128 -07 000000501 INF: MeasureProfile start
17-03-17 20:56:48.128 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:48.128 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:48.138 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:56:48.138 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:56:48.138 -07 000000501 INF: MeasureProfile done
17-03-17 20:56:48.138 -07 000000501 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:56:48.138 -07 000000501 INF: Autofocus finished
17-03-17 20:56:48.338 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:56:48.338 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 20:56:48.338 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.135304614725722. ----------
17-03-17 20:56:48.338 -07 000000610 INF: Cycle	44	Tile	17	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:56:48.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28062, sync = True, waitForSettling = True)
17-03-17 20:56:48.348 -07 000000610 INF: Z Motor: Moving to -0.128460 mm, started at -0.135305 mm, distance = 6.85 um
17-03-17 20:56:48.348 -07 000000610 INF: FPGA: Xmit ZDACW 28062\n [Z Motor]
17-03-17 20:56:48.348 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:56:48.358 -07 000000610 INF: FPGA: 'ZDACW 28062' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:56:48.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:48.358 -07 000000382 INF: FPGA: Recv ZDACR 28062
17-03-17 20:56:48.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:48.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:56:48.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:48.518 -07 000000382 INF: FPGA: Recv ZSGSRD 29287
17-03-17 20:56:48.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:48.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:48.528 -07 000000462 INF: FPGA: Recv ZSGSRD 29290
17-03-17 20:56:48.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:48.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:48.538 -07 000000382 INF: FPGA: Recv ZSGSRD 29278
17-03-17 20:56:48.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:48.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:48.548 -07 000000462 INF: FPGA: Recv ZSGSRD 29285
17-03-17 20:56:48.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:48.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:48.558 -07 000000433 INF: FPGA: Recv ZSGSRD 29283
17-03-17 20:56:48.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:48.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:48.568 -07 000000512 INF: FPGA: Recv ZSGSRD 29286
17-03-17 20:56:48.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:48.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:48.578 -07 000000433 INF: FPGA: Recv ZSGSRD 29288
17-03-17 20:56:48.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:48.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:48.588 -07 000000576 INF: FPGA: Recv ZSGSRD 29284
17-03-17 20:56:48.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:48.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:48.598 -07 000000462 INF: FPGA: Recv ZSGSRD 29286
17-03-17 20:56:48.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:48.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:48.608 -07 000000424 INF: FPGA: Recv ZSGSRD 29291
17-03-17 20:56:48.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:48.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:48.618 -07 000000501 INF: FPGA: Recv ZPIEZORD 25008
17-03-17 20:56:48.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:48.628 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.282 V. Piezo Error = -9.4 V.
17-03-17 20:56:48.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29286 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29286 (-127.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29278 (-127.6 uncal um), Max = 29291 (-127.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 20:56:48.628 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29286, posNoise = 5, negNoise = 8
17-03-17 20:56:48.628 -07 000000610 INF: Z Motor: After move to -0.128460, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:48.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:56:48.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:48.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:48.628 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:48.628 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:56:48.628 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:56:48.628 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:56:48.628 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:48.628 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:48.628 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:56:48.628 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:56:48.628 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:48.628 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:56:48.638 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:56:48.638 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:56:48.638 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 20:56:48.638 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:56:48.648 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 20:56:48.648 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 20:56:48.648 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 20:56:48.648 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 20:56:48.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28239 150\n [Camera]
17-03-17 20:56:48.848 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:56:49.278 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:56:49.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:56:49.278 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:49.278 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:49.278 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:56:49.278 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:56:49.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:56:49.278 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:49.278 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:49.278 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:56:49.468 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28239 807
17-03-17 20:56:49.618 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:56:49.628 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 3.96762,
17-03-17 20:56:49.658 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:56:49.658 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:56:49.658 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:49.658 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:49.658 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 20:56:49.658 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:56:49.658 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:49.668 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 20:56:49.668 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 20:56:49.668 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 20:56:49.818 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:56:49.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:56:49.818 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:49.938 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:56:49.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:56:49.938 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:49.938 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:49.938 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:49.938 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:56:49.938 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:56:50.018 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1354
17-03-17 20:56:50.018 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:56:50.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28239 150' command took 2 ms to send, 1350 ms to get response, and 1361 ms overall
17-03-17 20:56:50.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:56:50.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.128462828794746. ------
17-03-17 20:56:50.018 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:50.018 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13483 mm
17-03-17 20:56:50.018 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:56:50.028 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:50.028 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:56:50.028 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 20:56:50.028 -07 000000576 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 20:56:50.028 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:50.028 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29454, sync = True, waitForSettling = False)
17-03-17 20:56:50.028 -07 000000512 INF: Z Motor: Moving to -0.134832 mm, started at -0.128463 mm, distance = -6.37 um
17-03-17 20:56:50.028 -07 000000448 INF: FPGA: Recv YRDPOS 149864
17-03-17 20:56:50.038 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:50.038 -07 000000576 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:50.038 -07 000000576 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:56:50.038 -07 000000576 INF: Y Motor: Moving 1355 steps-34
17-03-17 20:56:50.038 -07 000000512 INF: FPGA: Xmit ZDACW 29454\n [Z Motor]
17-03-17 20:56:50.038 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 20:56:50.048 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:56:50.048 -07 000000512 INF: FPGA: 'ZDACW 29454' command took 3 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 20:56:50.058 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:56:50.068 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:50.068 -07 000000448 INF: FPGA: Recv ZDACR 29454
17-03-17 20:56:50.078 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:56:50.078 -07 000000512 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 20:56:50.248 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:56:50.248 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 20:56:50.328 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 20:56:50.328 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 20:56:50.328 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:50.328 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:56:50.328 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 20:56:50.328 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:50.328 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:50.328 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:50.328 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-17 20:56:50.338 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 20:56:50.428 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 20:56:50.428 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 20:56:50.488 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:50.488 -07 000000382 INF: FPGA: Recv YRDPOS 151567
17-03-17 20:56:50.498 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 20:56:50.498 -07 000000576 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:50.498 -07 000000576 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 20:56:50.498 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.847 mm, average velocity = 2.144 mm/sec
17-03-17 20:56:51.448 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:51.448 -07 000000448 INF: FPGA: Recv YRDPOS 151568
17-03-17 20:56:51.458 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:51.458 -07 000000576 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:51.468 -07 000000576 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:56:51.468 -07 000000576 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 20:56:51.468 -07 000000576 INF: Y Motor: Moved to 74.0078 after 1446 ms (table move)
17-03-17 20:56:51.478 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134832 mm (DAC = 29454)
17-03-17 20:56:51.478 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:51.478 -07 000000502 INF: FPGA: Recv ZSGSRD 30289
17-03-17 20:56:51.488 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:51.488 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:51.488 -07 000000576 INF: FPGA: Recv ZSGSRD 30283
17-03-17 20:56:51.498 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:51.498 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:51.498 -07 000000424 INF: FPGA: Recv ZSGSRD 30273
17-03-17 20:56:51.508 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:51.508 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:51.508 -07 000000576 INF: FPGA: Recv ZSGSRD 30276
17-03-17 20:56:51.518 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:51.518 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:51.518 -07 000000502 INF: FPGA: Recv ZSGSRD 30278
17-03-17 20:56:51.528 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:51.528 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:51.528 -07 000000608 INF: FPGA: Recv ZSGSRD 30275
17-03-17 20:56:51.538 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:51.538 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:51.538 -07 000000502 INF: FPGA: Recv ZSGSRD 30272
17-03-17 20:56:51.548 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:51.548 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:51.548 -07 000000608 INF: FPGA: Recv ZSGSRD 30285
17-03-17 20:56:51.558 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:51.558 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:51.558 -07 000000502 INF: FPGA: Recv ZSGSRD 30281
17-03-17 20:56:51.568 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:51.568 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:51.568 -07 000000424 INF: FPGA: Recv ZSGSRD 30282
17-03-17 20:56:51.578 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:51.578 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:51.578 -07 000000448 INF: FPGA: Recv ZPIEZORD 26330
17-03-17 20:56:51.588 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:51.588 -07 000000433 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.494 V. Piezo Error = -8.7 V.
17-03-17 20:56:51.588 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30279 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30280 (-134.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30272 (-134.0 uncal um), Max = 30289 (-134.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 20:56:51.588 -07 000000433 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30279, posNoise = 10, negNoise = 7
17-03-17 20:56:51.588 -07 000000433 INF: Z Motor: After move to -0.134832, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:51.588 -07 000000433 INF: Z Motor: Settle wait time = 1449 ms, measure time = 110 ms (allowed 150 ms), total time = 1559 ms
17-03-17 20:56:51.588 -07 000000433 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 20:56:51.628 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 20:56:51.628 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:56:51.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:51.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:51.628 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:51.628 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:51.628 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:56:51.628 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:51.628 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:51.628 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:56:51.638 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:56:51.638 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:56:51.638 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 20:56:51.638 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 20:56:51.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:56:51.688 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:56:51.828 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:56:51.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:56:51.888 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:56:51.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:56:51.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:56:51.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:56:51.928 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:56:51.928 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 20:56:51.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 20:56:52.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 20:56:52.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:52.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 20:56:52.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 20:56:52.028 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:52.028 -07 000000502 INF: Autofocus start
17-03-17 20:56:52.028 -07 000000502 INF: MeasureProfile start
17-03-17 20:56:52.028 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:52.038 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 20:56:52.038 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:56:52.048 -07 000000502 INF: MeasureProfile done
17-03-17 20:56:52.048 -07 000000502 INF: X=0  Z correction [um]=-0.02394831
17-03-17 20:56:52.048 -07 000000502 INF: Autofocus finished
17-03-17 20:56:52.238 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:56:52.238 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 204 ms overall
17-03-17 20:56:52.238 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.134842071451515. ----------
17-03-17 20:56:52.238 -07 000000610 INF: Cycle	44	Tile	18	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:56:52.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27962, sync = True, waitForSettling = True)
17-03-17 20:56:52.248 -07 000000610 INF: Z Motor: Moving to -0.128002 mm, started at -0.134842 mm, distance = 6.84 um
17-03-17 20:56:52.248 -07 000000610 INF: FPGA: Xmit ZDACW 27962\n [Z Motor]
17-03-17 20:56:52.248 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 20:56:52.258 -07 000000610 INF: FPGA: 'ZDACW 27962' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:56:52.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:52.258 -07 000000448 INF: FPGA: Recv ZDACR 27962
17-03-17 20:56:52.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:52.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:56:52.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:52.418 -07 000000433 INF: FPGA: Recv ZSGSRD 29214
17-03-17 20:56:52.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:52.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:52.428 -07 000000502 INF: FPGA: Recv ZSGSRD 29215
17-03-17 20:56:52.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:52.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:52.438 -07 000000424 INF: FPGA: Recv ZSGSRD 29212
17-03-17 20:56:52.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:52.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:52.448 -07 000000541 INF: FPGA: Recv ZSGSRD 29214
17-03-17 20:56:52.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:52.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:52.458 -07 000000462 INF: FPGA: Recv ZSGSRD 29214
17-03-17 20:56:52.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:52.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:52.468 -07 000000541 INF: FPGA: Recv ZSGSRD 29217
17-03-17 20:56:52.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:52.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:52.478 -07 000000541 INF: FPGA: Recv ZSGSRD 29218
17-03-17 20:56:52.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:52.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:52.488 -07 000000433 INF: FPGA: Recv ZSGSRD 29215
17-03-17 20:56:52.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:52.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:52.498 -07 000000608 INF: FPGA: Recv ZSGSRD 29216
17-03-17 20:56:52.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:52.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:52.508 -07 000000433 INF: FPGA: Recv ZSGSRD 29214
17-03-17 20:56:52.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:52.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:52.518 -07 000000502 INF: FPGA: Recv ZPIEZORD 24923
17-03-17 20:56:52.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:52.528 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.267 V. Piezo Error = -9.4 V.
17-03-17 20:56:52.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29215 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29214 (-127.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29212 (-127.2 uncal um), Max = 29218 (-127.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 20:56:52.528 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29215, posNoise = 3, negNoise = 3
17-03-17 20:56:52.528 -07 000000610 INF: Z Motor: After move to -0.128002, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:52.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 20:56:52.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:52.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:52.528 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:52.528 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:52.528 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:56:52.528 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:52.528 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:56:52.528 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:56:52.528 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 20:56:52.528 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:56:52.528 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:56:52.528 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:56:52.538 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:56:52.538 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:56:52.538 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:56:52.538 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:56:52.538 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 20:56:52.548 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:56:52.548 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 20:56:52.548 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 20:56:52.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28138 150\n [Camera]
17-03-17 20:56:52.748 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:56:53.168 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:56:53.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:56:53.168 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:53.168 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:53.168 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:56:53.168 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:56:53.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:56:53.168 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:53.168 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:53.168 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:56:53.358 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28138 807
17-03-17 20:56:53.508 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:56:53.558 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 20:56:53.558 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 20:56:53.558 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:53.558 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 20:56:53.558 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 20:56:53.558 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:53.558 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:56:53.558 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 20:56:53.558 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 20:56:53.568 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 20:56:53.718 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1162
17-03-17 20:56:53.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1162
17-03-17 20:56:53.718 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:53.828 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1162
17-03-17 20:56:53.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1162
17-03-17 20:56:53.828 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:53.828 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:53.828 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:56:53.838 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:53.838 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:56:53.908 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-17 20:56:53.908 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:56:53.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28138 150' command took 2 ms to send, 1352 ms to get response, and 1359 ms overall
17-03-17 20:56:53.908 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 20:56:53.908 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.128006709732681. ------
17-03-17 20:56:53.908 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:53.908 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13435 mm
17-03-17 20:56:53.908 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 20:56:53.908 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 20:56:53.908 -07 000000448 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 20:56:53.908 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29349, sync = True, waitForSettling = False)
17-03-17 20:56:53.908 -07 000000541 INF: Z Motor: Moving to -0.134351 mm, started at -0.128007 mm, distance = -6.34 um
17-03-17 20:56:53.918 -07 000000541 INF: FPGA: Xmit ZDACW 29349\n [Z Motor]
17-03-17 20:56:53.918 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:53.918 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 20:56:53.918 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 20:56:53.928 -07 000000541 INF: FPGA: 'ZDACW 29349' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:53.928 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:53.928 -07 000000576 INF: FPGA: Recv ZDACR 29349
17-03-17 20:56:53.938 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:53.938 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:53.938 -07 000000541 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 20:56:53.938 -07 000000576 INF: FPGA: Recv YRDPOS 151568
17-03-17 20:56:53.948 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 20:56:53.948 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 20:56:53.948 -07 000000448 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:53.948 -07 000000448 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 20:56:53.948 -07 000000448 INF: Y Motor: Moving 1352 steps-31
17-03-17 20:56:53.958 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 20:56:54.148 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 20:56:54.148 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-17 20:56:54.238 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 20:56:54.238 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 20:56:54.238 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:54.238 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 20:56:54.238 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 20:56:54.238 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:54.238 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:54.238 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:54.238 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 20:56:54.248 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 20:56:54.328 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 20:56:54.328 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 20:56:54.358 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:54.358 -07 000000608 INF: FPGA: Recv YRDPOS 153255
17-03-17 20:56:54.368 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 20:56:54.368 -07 000000448 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:54.368 -07 000000448 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 20:56:54.368 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.183 mm/sec
17-03-17 20:56:54.988 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.011254,
17-03-17 20:56:55.318 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 20:56:55.318 -07 000000502 INF: FPGA: Recv YRDPOS 153255
17-03-17 20:56:55.328 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:55.328 -07 000000448 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 20:56:55.338 -07 000000448 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 20:56:55.338 -07 000000448 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 20:56:55.338 -07 000000448 INF: Y Motor: Moved to 74.8315 after 1427 ms (table move)
17-03-17 20:56:55.348 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134351 mm (DAC = 29349)
17-03-17 20:56:55.348 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:55.348 -07 000000448 INF: FPGA: Recv ZSGSRD 30207
17-03-17 20:56:55.358 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:55.358 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:55.358 -07 000000415 INF: FPGA: Recv ZSGSRD 30201
17-03-17 20:56:55.368 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:55.368 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:55.368 -07 000000475 INF: FPGA: Recv ZSGSRD 30194
17-03-17 20:56:55.378 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:55.378 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:55.378 -07 000000459 INF: FPGA: Recv ZSGSRD 30206
17-03-17 20:56:55.388 -07 000000424 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:55.388 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:55.388 -07 000000459 INF: FPGA: Recv ZSGSRD 30207
17-03-17 20:56:55.398 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:55.398 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:55.398 -07 000000459 INF: FPGA: Recv ZSGSRD 30208
17-03-17 20:56:55.408 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:55.408 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:55.408 -07 000000541 INF: FPGA: Recv ZSGSRD 30204
17-03-17 20:56:55.418 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:55.418 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:55.418 -07 000000433 INF: FPGA: Recv ZSGSRD 30205
17-03-17 20:56:55.428 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:55.428 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:55.428 -07 000000459 INF: FPGA: Recv ZSGSRD 30204
17-03-17 20:56:55.438 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:55.438 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:55.438 -07 000000415 INF: FPGA: Recv ZSGSRD 30209
17-03-17 20:56:55.448 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:55.448 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:55.448 -07 000000415 INF: FPGA: Recv ZPIEZORD 26187
17-03-17 20:56:55.458 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:55.458 -07 000000424 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.478 V. Piezo Error = -8.8 V.
17-03-17 20:56:55.458 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30204 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30206 (-133.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30194 (-133.5 uncal um), Max = 30209 (-133.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 20:56:55.458 -07 000000424 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30204, posNoise = 5, negNoise = 10
17-03-17 20:56:55.458 -07 000000424 INF: Z Motor: After move to -0.134351, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:55.458 -07 000000424 INF: Z Motor: Settle wait time = 1430 ms, measure time = 110 ms (allowed 150 ms), total time = 1540 ms
17-03-17 20:56:55.458 -07 000000424 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 20:56:55.498 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 20:56:55.498 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 20:56:55.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:55.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:55.498 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:55.498 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:55.498 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 20:56:55.498 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:55.508 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 20:56:55.508 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 20:56:55.508 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 20:56:55.508 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 20:56:55.518 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 20:56:55.518 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 20:56:55.518 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 20:56:55.568 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 20:56:55.768 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 20:56:55.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 20:56:55.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 20:56:55.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 20:56:55.808 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 20:56:55.808 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 20:56:55.808 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 20:56:55.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 20:56:55.898 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:55.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 20:56:55.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 20:56:55.908 -07 000000429 INF: Autofocus start
17-03-17 20:56:55.908 -07 000000429 INF: MeasureProfile start
17-03-17 20:56:55.908 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 20:56:55.918 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 20:56:55.918 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 20:56:55.918 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 20:56:55.918 -07 000000429 INF: MeasureProfile done
17-03-17 20:56:55.918 -07 000000429 INF: X=16  Z correction [um]=0.0530179
17-03-17 20:56:55.918 -07 000000429 INF: Autofocus finished
17-03-17 20:56:56.118 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 20:56:56.118 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 20:56:56.118 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.134360255540883. ----------
17-03-17 20:56:56.128 -07 000000610 INF: Cycle	44	Tile	19	Exposure Settings		A	422	G	203	T	203	C	422
17-03-17 20:56:56.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27873, sync = True, waitForSettling = True)
17-03-17 20:56:56.128 -07 000000610 INF: Z Motor: Moving to -0.127594 mm, started at -0.134360 mm, distance = 6.77 um
17-03-17 20:56:56.128 -07 000000610 INF: FPGA: Xmit ZDACW 27873\n [Z Motor]
17-03-17 20:56:56.128 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 20:56:56.138 -07 000000610 INF: FPGA: 'ZDACW 27873' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 20:56:56.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 20:56:56.138 -07 000000415 INF: FPGA: Recv ZDACR 27873
17-03-17 20:56:56.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:56.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 20:56:56.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:56.298 -07 000000448 INF: FPGA: Recv ZSGSRD 29153
17-03-17 20:56:56.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 20:56:56.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:56.308 -07 000000448 INF: FPGA: Recv ZSGSRD 29150
17-03-17 20:56:56.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:56.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:56.318 -07 000000415 INF: FPGA: Recv ZSGSRD 29152
17-03-17 20:56:56.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:56.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:56.328 -07 000000415 INF: FPGA: Recv ZSGSRD 29146
17-03-17 20:56:56.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:56.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:56.338 -07 000000462 INF: FPGA: Recv ZSGSRD 29150
17-03-17 20:56:56.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:56.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:56.348 -07 000000415 INF: FPGA: Recv ZSGSRD 29149
17-03-17 20:56:56.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:56.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:56.358 -07 000000424 INF: FPGA: Recv ZSGSRD 29148
17-03-17 20:56:56.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:56.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:56.368 -07 000000448 INF: FPGA: Recv ZSGSRD 29156
17-03-17 20:56:56.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:56.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:56.378 -07 000000424 INF: FPGA: Recv ZSGSRD 29152
17-03-17 20:56:56.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:56.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 20:56:56.388 -07 000000424 INF: FPGA: Recv ZSGSRD 29149
17-03-17 20:56:56.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:56.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 20:56:56.398 -07 000000459 INF: FPGA: Recv ZPIEZORD 24840
17-03-17 20:56:56.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 20:56:56.408 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.253 V. Piezo Error = -9.5 V.
17-03-17 20:56:56.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29150 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29150 (-126.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29146 (-126.8 uncal um), Max = 29156 (-126.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 20:56:56.408 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29150, posNoise = 6, negNoise = 4
17-03-17 20:56:56.408 -07 000000610 INF: Z Motor: After move to -0.127594, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 20:56:56.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 20:56:56.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 20:56:56.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 20:56:56.408 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 20:56:56.408 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 20:56:56.408 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 20:56:56.408 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 20:56:56.408 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 20:56:56.408 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 20:56:56.408 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 20:56:56.408 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 20:56:56.408 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 20:56:56.408 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 20:56:56.418 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 20:56:56.418 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 20:56:56.418 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 20:56:56.418 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 20:56:56.428 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 20:56:56.428 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:56:56.428 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 20:56:56.428 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 20:56:56.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 422 422 203 203 28050 150\n [Camera]
17-03-17 20:56:56.628 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 20:56:56.828 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 20:56:56.828 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 43. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=646, R2=670, Total=1316. Warn if over 250 bubbles per interval.
17-03-17 20:56:57.048 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 614
17-03-17 20:56:57.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 614
17-03-17 20:56:57.048 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:57.048 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:57.048 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 20:56:57.048 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 614
17-03-17 20:56:57.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 614
17-03-17 20:56:57.048 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:57.048 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:57.048 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 20:56:57.238 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28050 808
17-03-17 20:56:57.388 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 957
17-03-17 20:56:57.428 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 20:56:57.428 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 20:56:57.428 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:57.428 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 20:56:57.428 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 20:56:57.428 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:57.428 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:57.428 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:57.428 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 20:56:57.548 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 499 ms.
17-03-17 20:56:57.598 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1160
17-03-17 20:56:57.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1160
17-03-17 20:56:57.598 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 20:56:57.598 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1160
17-03-17 20:56:57.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1160
17-03-17 20:56:57.598 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 20:56:57.598 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 20:56:57.608 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 20:56:57.608 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 20:56:57.608 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 20:56:57.788 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1352
17-03-17 20:56:57.788 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 20:56:57.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 422 422 203 203 28050 150' command took 2 ms to send, 1352 ms to get response, and 1359 ms overall
17-03-17 20:56:57.978 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 20:56:57.978 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 20:56:57.978 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:57.978 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 20:56:57.978 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 20:56:57.978 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 20:56:57.988 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 20:56:57.988 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 20:56:57.988 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 20:56:57.988 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 20:56:57.988 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 20:56:58.028 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 20:56:58.028 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 20:56:58.068 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 20:56:58.088 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 20:56:58.088 -07 000000610 INF: Imaging Cycle 44: ScanTilesCommand Cycle 44 time end. Duration was 160563 ms.
17-03-17 20:56:58.088 -07 000000610 INF: =================== Cycle #44 ===================
17-03-17 20:56:58.088 -07 000000610 INF: ===================  ===================
17-03-17 20:56:58.088 -07 000000459 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 20:56:58.088 -07 000000433 INF: FPGA: Recv EXLED1ADCR 22
17-03-17 20:56:58.098 -07 000000459 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 20:56:58.098 -07 000000459 INF: GreenLED: Using Green data: Photodiode ADC 22 --> 0.0 mW (old method), or 1.6 mW (new method). Difference = 1.6 mW
17-03-17 20:56:58.098 -07 000000459 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 44, FrontChillerTemperature: 4.011254, FrontChillerHeatSinkTemperature: 0.550775, AmbientTemperature: 19.03709, FlowCellCompartmentTemperature: 21.99399, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.8415, GreenLEDSensorTemperature: 26.51962, PhotodiodePowerAdcGreen: 22, PhotodiodePowerMwGreen: 1.562308
17-03-17 20:56:58.128 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.