17-03-17 21:01:35.458 -07 000000610 INF: =================== Cycle #46 ===================
17-03-17 21:01:35.458 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 21:01:35.458 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 21:01:35.458 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:01:35.468 -07 000000626 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:01:35.478 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:01:35.478 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:01:35.478 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 21:01:35.478 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 21:01:35.478 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 21:01:35.588 -07 000000576 INF: FPGA: Recv YMVTO 154377 871
17-03-17 21:01:35.588 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 21:01:35.588 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 21:01:35.588 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 21:01:35.588 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 21:01:35.878 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.019446,
17-03-17 21:01:36.838 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:01:36.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=667, R2=692, Total=1359. Warn if over 250 bubbles per interval.
17-03-17 21:01:38.588 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:01:38.588 -07 000000438 INF: FPGA: Recv YRDPOS 154380
17-03-17 21:01:38.598 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:01:38.598 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:01:38.618 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:01:38.618 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 21:01:38.618 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3151 ms
17-03-17 21:01:38.618 -07 000000610 INF: =================== Cycle #46, Flow Cell Temp 60° ===================
17-03-17 21:01:38.618 -07 000000610 INF: =================== Cycle #46, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 21:01:38.618 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 21:01:38.628 -07 000000618 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:01:38.628 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:01:38.628 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:01:38.628 -07 000000438 INF: FPGA: Recv TEC2EN 
17-03-17 21:01:38.638 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:01:38.638 -07 000000610 INF: =================== Cycle #46, Flow Cell Temp 60° ===================
17-03-17 21:01:38.638 -07 000000610 INF: =================== Cycle #46 ===================
17-03-17 21:01:38.638 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:01:38.638 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:01:38.668 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:01:38.668 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 21:01:38.668 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:01:38.968 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:01:38.988 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:01:38.988 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:01:39.038 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:01:39.058 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:01:39.058 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:01:39.158 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3) ===================
17-03-17 21:01:39.158 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:01:39.188 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:01:39.218 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:01:39.218 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:01:39.218 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:01:39.348 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:01:39.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:01:41.238 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.007176,
17-03-17 21:01:41.838 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 21:01:41.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=668, R2=693, Total=1361. Warn if over 250 bubbles per interval.
17-03-17 21:01:42.518 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:01:42.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:01:42.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:01:42.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:01:43.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:01:43.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:01:43.448 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:01:43.448 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3) ===================
17-03-17 21:01:43.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:01:43.608 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:01:43.608 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:01:43.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:01:43.768 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:01:43.768 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:01:43.768 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:01:43.898 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:01:43.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:01:44.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:01:44.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:01:44.388 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:01:44.388 -07 000000610 INF: =================== Cycle #46 ===================
17-03-17 21:01:45.608 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 21:01:45.608 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 21:01:45.608 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:01:45.628 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:01:45.628 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 21:01:45.628 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 21:01:45.768 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:01:45.788 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 21:01:45.788 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 21:01:45.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:01:45.858 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:01:45.858 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:01:45.958 -07 000000610 INF: =================== Cycle #46, Pumping Reagent CMS (4) ===================
17-03-17 21:01:45.958 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:01:45.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:01:45.988 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:01:45.988 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:01:45.988 -07 000000610 INF: =================== Cycle #46, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 21:01:46.118 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:01:46.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:01:46.598 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.045313,
17-03-17 21:01:46.838 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 21:01:46.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=670, R2=694, Total=1364. Warn if over 250 bubbles per interval.
17-03-17 21:01:47.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:01:47.628 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:01:48.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:01:48.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:01:48.078 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:01:48.078 -07 000000610 INF: =================== Cycle #46, Pumping Reagent CMS (4) ===================
17-03-17 21:01:48.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:01:48.238 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:01:48.238 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:01:48.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:01:48.398 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:01:48.398 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:01:48.398 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:01:48.528 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:01:48.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:01:48.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:01:49.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:01:49.018 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:01:49.018 -07 000000610 INF: =================== Cycle #46 ===================
17-03-17 21:01:50.238 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:01:50.238 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:01:50.238 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:01:50.258 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:01:50.258 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 21:01:50.258 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 21:01:50.408 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:01:50.428 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 21:01:50.428 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 21:01:50.478 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:01:50.498 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:01:50.498 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:01:50.598 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3) ===================
17-03-17 21:01:50.598 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:01:50.598 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:01:50.628 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:01:50.628 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:01:50.628 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:01:50.758 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:01:50.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:01:51.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:01:51.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:01:51.698 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:01:51.698 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3) ===================
17-03-17 21:01:51.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:01:51.838 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 10
17-03-17 21:01:51.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=10, R2=4, Total=14. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=680, R2=698, Total=1378. Warn if over 250 bubbles per interval.
17-03-17 21:01:51.858 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:01:51.858 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:01:51.958 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.026244,
17-03-17 21:01:51.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:01:52.018 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:01:52.018 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:01:52.018 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:01:52.148 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:01:52.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:01:52.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:01:52.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:01:52.638 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:01:52.638 -07 000000610 INF: =================== Cycle #46 ===================
17-03-17 21:01:52.638 -07 000000627 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:01:52.638 -07 000000627 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:01:52.638 -07 000000576 INF: WaitCommand(10000) start
17-03-17 21:01:53.858 -07 000000627 INF: AsyncDelayTimer waited 1215ms
17-03-17 21:01:53.858 -07 000000627 INF: LanePump: Xmit /1?\r
17-03-17 21:01:53.888 -07 000000627 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:01:53.888 -07 000000627 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:01:54.018 -07 000000627 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:01:54.058 -07 000000627 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:01:55.588 -07 000000627 INF: LanePump: Xmit /1Q\r
17-03-17 21:01:55.618 -07 000000627 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:01:56.038 -07 000000627 INF: LanePump: Xmit /1Q\r
17-03-17 21:01:56.068 -07 000000627 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:01:56.068 -07 000000627 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 21:01:56.068 -07 000000627 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:01:56.068 -07 000000627 INF: ===================  ===================
17-03-17 21:01:56.838 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 21:01:56.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=682, R2=700, Total=1382. Warn if over 250 bubbles per interval.
17-03-17 21:01:57.318 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.979922,
17-03-17 21:02:01.838 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 21:02:01.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=682, R2=702, Total=1384. Warn if over 250 bubbles per interval.
17-03-17 21:02:02.648 -07 000000576 INF: WaitCommand(10000) end
17-03-17 21:02:02.648 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3) ===================
17-03-17 21:02:02.648 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 21:02:02.648 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:02:02.678 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:02:02.678 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:02:02.678 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:02:02.678 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.973092,
17-03-17 21:02:02.808 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 21:02:02.848 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:02:06.838 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 6
17-03-17 21:02:06.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=6, R2=3, Total=9. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=688, R2=705, Total=1393. Warn if over 250 bubbles per interval.
17-03-17 21:02:08.038 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.990831,
17-03-17 21:02:08.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:02:09.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:02:09.428 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:02:09.458 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:02:09.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:02:09.908 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:02:10.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:02:10.358 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:02:10.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:02:10.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:02:10.808 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 21:02:10.808 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3) ===================
17-03-17 21:02:10.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:02:10.968 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:02:10.968 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:02:11.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:02:11.128 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:02:11.128 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:02:11.128 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:02:11.258 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:02:11.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:02:11.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:02:11.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:02:11.748 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:02:11.748 -07 000000610 INF: =================== Cycle #46 ===================
17-03-17 21:02:11.838 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 8
17-03-17 21:02:11.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=8, R2=7, Total=15. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:02:12.968 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:02:12.968 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 21:02:12.968 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:02:12.988 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:02:12.988 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 21:02:12.988 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 21:02:13.198 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:02:13.218 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 21:02:13.218 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 21:02:13.268 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:02:13.288 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:02:13.288 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:02:13.388 -07 000000610 INF: =================== Cycle #46, Pumping Reagent IMT (1) ===================
17-03-17 21:02:13.388 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:02:13.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:02:13.398 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.997626,
17-03-17 21:02:13.418 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:02:13.418 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:02:13.418 -07 000000610 INF: =================== Cycle #46, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 21:02:13.548 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:02:13.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:02:15.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:02:15.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:02:15.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:02:15.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:02:15.508 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:02:15.508 -07 000000610 INF: =================== Cycle #46, Pumping Reagent IMT (1) ===================
17-03-17 21:02:15.638 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:02:15.668 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:02:15.668 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:02:15.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:02:15.828 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:02:15.828 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:02:15.828 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:02:15.958 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:02:15.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:02:16.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:02:16.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:02:16.448 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:02:16.448 -07 000000610 INF: =================== Cycle #46 ===================
17-03-17 21:02:16.838 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:02:16.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:02:17.668 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 21:02:17.668 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:02:17.668 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:02:17.688 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:02:17.688 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 21:02:17.688 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:02:17.918 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:02:17.938 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 21:02:17.938 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 21:02:17.988 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:02:18.008 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:02:18.008 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:02:18.108 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3) ===================
17-03-17 21:02:18.108 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:02:18.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:02:18.138 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:02:18.138 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:02:18.138 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:02:18.268 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:02:18.308 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:02:18.758 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.024884,
17-03-17 21:02:19.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:02:19.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:02:19.208 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:02:19.208 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3) ===================
17-03-17 21:02:19.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:02:19.368 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:02:19.368 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:02:19.498 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:02:19.528 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:02:19.528 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:02:19.528 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:02:19.658 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:02:19.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:02:20.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:02:20.148 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:02:20.148 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:02:20.148 -07 000000610 INF: =================== Cycle #46 ===================
17-03-17 21:02:20.148 -07 000000610 INF: =================== Cycle #46, Flow Cell Temp 65° ===================
17-03-17 21:02:20.148 -07 000000610 INF: =================== Cycle #46, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 21:02:20.148 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 21:02:20.148 -07 000000501 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:02:20.158 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:02:20.158 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:02:20.158 -07 000000501 INF: FPGA: Recv TEC2EN 
17-03-17 21:02:20.168 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:02:20.168 -07 000000610 INF: =================== Cycle #46, Flow Cell Temp 65° ===================
17-03-17 21:02:20.168 -07 000000610 INF: =================== Cycle #46 ===================
17-03-17 21:02:20.168 -07 000000610 INF: WaitCommand(30000) start
17-03-17 21:02:21.838 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:02:21.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:02:24.118 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.024884,
17-03-17 21:02:26.838 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:02:26.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:02:29.478 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.997626,
17-03-17 21:02:31.838 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:02:31.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:02:34.838 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.011254,
17-03-17 21:02:36.838 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:02:36.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:02:40.198 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.011254,
17-03-17 21:02:41.838 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:02:41.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:02:45.558 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.015368,
17-03-17 21:02:46.838 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:02:46.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:02:50.178 -07 000000610 INF: WaitCommand(30000) end
17-03-17 21:02:50.178 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3) ===================
17-03-17 21:02:50.178 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 21:02:50.278 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:02:50.308 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:02:50.308 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:02:50.308 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:02:50.438 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 21:02:50.478 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:02:50.918 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.988112,
17-03-17 21:02:51.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:02:51.048 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:02:51.048 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 21:02:51.048 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3) ===================
17-03-17 21:02:51.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:02:51.208 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:02:51.208 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:02:51.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:02:51.368 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:02:51.368 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:02:51.368 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:02:51.498 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:02:51.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:02:51.838 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:02:51.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:02:51.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:02:51.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:02:51.988 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:02:51.988 -07 000000610 INF: =================== Cycle #46 ===================
17-03-17 21:02:51.988 -07 000000476 INF: WaitCommand(30000) start
17-03-17 21:02:51.988 -07 000000541 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:02:51.988 -07 000000541 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:02:53.208 -07 000000541 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:02:53.208 -07 000000541 INF: LanePump: Xmit /1?\r
17-03-17 21:02:53.238 -07 000000541 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:02:53.238 -07 000000541 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:02:53.368 -07 000000541 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:02:53.408 -07 000000541 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:02:55.748 -07 000000541 INF: LanePump: Xmit /1Q\r
17-03-17 21:02:55.778 -07 000000541 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:02:56.198 -07 000000541 INF: LanePump: Xmit /1Q\r
17-03-17 21:02:56.228 -07 000000541 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:02:56.228 -07 000000541 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 21:02:56.228 -07 000000541 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:02:56.228 -07 000000541 INF: ===================  ===================
17-03-17 21:02:56.278 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.974486,
17-03-17 21:02:56.838 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:02:56.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:03:01.638 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.989471,
17-03-17 21:03:01.838 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:03:01.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:03:06.838 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:03:06.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:03:06.998 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.979922,
17-03-17 21:03:11.838 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:03:11.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:03:12.358 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.986717,
17-03-17 21:03:16.838 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:03:16.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:03:17.718 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.009895,
17-03-17 21:03:21.838 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:03:21.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:03:21.998 -07 000000476 INF: WaitCommand(30000) end
17-03-17 21:03:21.998 -07 000000610 INF: =================== Cycle #46, Flow Cell Temp 22° ===================
17-03-17 21:03:21.998 -07 000000610 INF: =================== Cycle #46, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 21:03:21.998 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 21:03:22.008 -07 000000626 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:03:22.008 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:03:22.008 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:03:22.008 -07 000000618 INF: FPGA: Recv TEC2EN 
17-03-17 21:03:22.018 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:22.018 -07 000000610 INF: =================== Cycle #46, Flow Cell Temp 22° ===================
17-03-17 21:03:22.018 -07 000000610 INF: =================== Cycle #46 ===================
17-03-17 21:03:22.018 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3) ===================
17-03-17 21:03:22.018 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:03:22.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:03:22.058 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:03:22.058 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:03:22.058 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:03:22.188 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:03:22.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:03:23.078 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.001704,
17-03-17 21:03:25.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:03:25.388 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:03:25.808 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:03:25.838 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:03:26.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:03:26.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:03:26.288 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:03:26.288 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3) ===================
17-03-17 21:03:26.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:03:26.448 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:03:26.448 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:03:26.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:03:26.608 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:03:26.608 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:03:26.608 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:03:26.738 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:03:26.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:03:26.838 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:03:26.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:03:27.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:03:27.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:03:27.228 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:03:27.228 -07 000000610 INF: =================== Cycle #46 ===================
17-03-17 21:03:28.438 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.007176,
17-03-17 21:03:28.448 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 21:03:28.448 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 21:03:28.448 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:03:28.468 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:03:28.468 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 21:03:28.468 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 21:03:28.618 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:03:28.638 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:03:28.638 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:03:28.688 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:03:28.708 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:03:28.708 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:03:28.808 -07 000000610 INF: =================== Cycle #46, Pumping Reagent USM (2) ===================
17-03-17 21:03:28.808 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:03:28.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:03:28.838 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:03:28.838 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:03:28.838 -07 000000610 INF: =================== Cycle #46, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 21:03:28.968 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:03:29.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:03:30.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:03:30.478 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:03:30.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:03:30.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:03:30.928 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:03:30.928 -07 000000610 INF: =================== Cycle #46, Pumping Reagent USM (2) ===================
17-03-17 21:03:31.058 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:03:31.088 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:03:31.088 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:03:31.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:03:31.248 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:03:31.248 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:03:31.248 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:03:31.378 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:03:31.408 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:03:31.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:03:31.838 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:03:31.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:03:31.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:03:31.868 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:03:31.868 -07 000000610 INF: =================== Cycle #46 ===================
17-03-17 21:03:33.088 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 21:03:33.088 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:03:33.088 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:03:33.108 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:03:33.108 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 21:03:33.108 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:03:33.258 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:03:33.278 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:03:33.278 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:03:33.328 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:03:33.348 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:03:33.348 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:03:33.448 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3) ===================
17-03-17 21:03:33.448 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:03:33.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:03:33.478 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:03:33.478 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:03:33.478 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:03:33.608 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:03:33.648 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:03:33.798 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.978563,
17-03-17 21:03:34.518 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:03:34.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:03:34.548 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 21:03:34.548 -07 000000610 INF: =================== Cycle #46, Pumping Reagent PR2 (3) ===================
17-03-17 21:03:34.678 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:03:34.708 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:03:34.708 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:03:34.838 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:03:34.868 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:03:34.868 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:03:34.868 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:03:34.998 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:03:35.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:03:35.458 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:03:35.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:03:35.488 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:03:35.488 -07 000000610 INF: =================== Cycle #46 ===================
17-03-17 21:03:35.488 -07 000000433 INF: WaitCommand(10000) start
17-03-17 21:03:35.488 -07 000000627 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:03:35.488 -07 000000627 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:03:36.708 -07 000000627 INF: AsyncDelayTimer waited 1215ms
17-03-17 21:03:36.708 -07 000000627 INF: LanePump: Xmit /1?\r
17-03-17 21:03:36.738 -07 000000627 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:03:36.738 -07 000000627 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:03:36.838 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:03:36.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:03:36.868 -07 000000627 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:03:36.908 -07 000000627 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:03:38.438 -07 000000627 INF: LanePump: Xmit /1Q\r
17-03-17 21:03:38.468 -07 000000627 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:03:38.888 -07 000000627 INF: LanePump: Xmit /1Q\r
17-03-17 21:03:38.918 -07 000000627 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:03:38.918 -07 000000627 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 21:03:38.918 -07 000000627 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:03:38.918 -07 000000627 INF: ===================  ===================
17-03-17 21:03:39.158 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.993549,
17-03-17 21:03:41.838 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:03:41.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:03:44.518 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.005817,
17-03-17 21:03:45.498 -07 000000433 INF: WaitCommand(10000) end
17-03-17 21:03:45.498 -07 000000610 INF: =================== Cycle #46, Imaging ===================
17-03-17 21:03:45.498 -07 000000610 INF: Imaging Cycle 46: ScanTilesCommand Cycle 46 time start.
17-03-17 21:03:45.508 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 21:03:45.508 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:03:45.528 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:03:45.528 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 21:03:45.528 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 21:03:45.828 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:03:45.848 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:03:45.848 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:03:45.898 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:03:45.918 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:03:45.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:03:45.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:03:45.918 -07 000000433 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 21:03:45.918 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:03:45.918 -07 000000433 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 21:03:45.928 -07 000000476 INF: FPGA: Recv EXLED1ON 
17-03-17 21:03:45.928 -07 000000433 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:03:45.928 -07 000000433 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 21:03:45.928 -07 000000424 INF: FPGA: Recv EXLED1ADCR 23168
17-03-17 21:03:45.938 -07 000000433 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:45.938 -07 000000433 INF: RedLED: Using Red data: Photodiode ADC 23168 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.9 mW
17-03-17 21:03:45.938 -07 000000433 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 21:03:45.938 -07 000000476 INF: FPGA: Recv EXLED1OFF 
17-03-17 21:03:45.948 -07 000000433 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:45.948 -07 000000433 INF: RedLED: LED was on for 19 ms
17-03-17 21:03:45.948 -07 000000433 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 21:03:45.948 -07 000000433 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 21:03:45.948 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:03:45.948 -07 000000433 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 21:03:45.948 -07 000000424 INF: FPGA: Recv EXLED2ON 
17-03-17 21:03:45.958 -07 000000433 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:03:45.958 -07 000000433 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:03:45.958 -07 000000424 INF: FPGA: Recv EXLED1ADCR 2097
17-03-17 21:03:45.968 -07 000000433 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:45.968 -07 000000433 INF: GreenLED: Using Green data: Photodiode ADC 2097 --> 0.9 mW (old method), or 182.2 mW (new method). Difference = 181.3 mW
17-03-17 21:03:45.968 -07 000000433 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 21:03:45.968 -07 000000476 INF: FPGA: Recv EXLED2OFF 
17-03-17 21:03:45.978 -07 000000433 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:45.978 -07 000000433 INF: GreenLED: LED was on for 19 ms
17-03-17 21:03:45.978 -07 000000433 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 21:03:45.978 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:03:45.978 -07 000000459 INF: FPGA: Recv EMCUR 
17-03-17 21:03:45.988 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:03:45.988 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 21:03:46.488 -07 000000618 INF: FPGA: Recv EMOUT
17-03-17 21:03:46.488 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 21:03:46.488 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 21:03:46.488 -07 000000627 INF: FPGA: Recv EMCUR 
17-03-17 21:03:46.498 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:03:46.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:03:46.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127512045397766. ------
17-03-17 21:03:46.498 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:03:46.498 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17949 mm
17-03-17 21:03:46.498 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:03:46.498 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:03:46.498 -07 000000476 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 21:03:46.498 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:03:46.508 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:03:46.508 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 39209, sync = True, waitForSettling = False)
17-03-17 21:03:46.508 -07 000000438 INF: Z Motor: Moving to -0.179487 mm, started at -0.127512 mm, distance = -51.98 um
17-03-17 21:03:46.508 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:03:46.508 -07 000000424 INF: FPGA: Recv YRDPOS 154379
17-03-17 21:03:46.518 -07 000000476 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:03:46.518 -07 000000476 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:03:46.518 -07 000000438 INF: FPGA: Xmit ZDACW 39209\n [Z Motor]
17-03-17 21:03:46.518 -07 000000476 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 21:03:46.518 -07 000000476 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:03:46.518 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:03:46.528 -07 000000438 INF: FPGA: 'ZDACW 39209' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:03:46.528 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:03:46.538 -07 000000476 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:03:46.548 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:03:46.548 -07 000000541 INF: FPGA: Recv ZDACR 39209
17-03-17 21:03:46.558 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:03:46.558 -07 000000438 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 21:03:46.728 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:03:46.728 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:03:46.838 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:03:46.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:03:48.218 -07 000000438 INF: FPGA: Recv YMVTO 122703 24776
17-03-17 21:03:48.218 -07 000000476 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1703 ms overall
17-03-17 21:03:48.218 -07 000000476 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:03:48.218 -07 000000476 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24776 steps (15.485 mm). Slippage = 0.018 mm (0.00%).
17-03-17 21:03:48.218 -07 000000476 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1703 ms, distance = 15.468 mm, average velocity = 9.083 mm/sec
17-03-17 21:03:49.878 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.0344,
17-03-17 21:03:51.068 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:03:51.068 -07 000000626 INF: FPGA: Recv YRDPOS 122696
17-03-17 21:03:51.078 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:51.078 -07 000000476 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:03:51.098 -07 000000476 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:03:51.098 -07 000000476 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-17 21:03:51.098 -07 000000476 INF: Y Motor: Moved to 59.9102 after 4595 ms
17-03-17 21:03:51.098 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179487 mm (DAC = 39209)
17-03-17 21:03:51.098 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:51.108 -07 000000424 INF: FPGA: Recv ZSGSRD 37235
17-03-17 21:03:51.108 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:03:51.108 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:51.108 -07 000000476 INF: FPGA: Recv ZSGSRD 37233
17-03-17 21:03:51.118 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:51.118 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:51.118 -07 000000424 INF: FPGA: Recv ZSGSRD 37226
17-03-17 21:03:51.128 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:51.128 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:51.128 -07 000000476 INF: FPGA: Recv ZSGSRD 37229
17-03-17 21:03:51.138 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:51.138 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:51.138 -07 000000424 INF: FPGA: Recv ZSGSRD 37231
17-03-17 21:03:51.148 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:51.148 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:51.148 -07 000000424 INF: FPGA: Recv ZSGSRD 37226
17-03-17 21:03:51.158 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:51.158 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:51.158 -07 000000476 INF: FPGA: Recv ZSGSRD 37226
17-03-17 21:03:51.168 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:51.168 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:51.168 -07 000000501 INF: FPGA: Recv ZSGSRD 37233
17-03-17 21:03:51.178 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:51.178 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:51.178 -07 000000476 INF: FPGA: Recv ZSGSRD 37228
17-03-17 21:03:51.188 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:51.188 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:51.188 -07 000000501 INF: FPGA: Recv ZSGSRD 37234
17-03-17 21:03:51.198 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:51.198 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:03:51.198 -07 000000501 INF: FPGA: Recv ZPIEZORD 33703
17-03-17 21:03:51.208 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:51.208 -07 000000576 INF: Z Motor: Piezo is near 52.0 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.983 V. Piezo Error = -7.8 V.
17-03-17 21:03:51.208 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37230 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37230 (-178.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37226 (-178.6 uncal um), Max = 37235 (-178.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:03:51.208 -07 000000576 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37230, posNoise = 5, negNoise = 4
17-03-17 21:03:51.208 -07 000000576 INF: Z Motor: After move to -0.179487, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:03:51.208 -07 000000576 INF: Z Motor: Settle wait time = 4597 ms, measure time = 103 ms (allowed 150 ms), total time = 4700 ms
17-03-17 21:03:51.208 -07 000000576 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:03:51.258 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4753 ms
17-03-17 21:03:51.258 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:03:51.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:03:51.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:03:51.258 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:03:51.258 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:03:51.258 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:03:51.258 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:03:51.258 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:03:51.258 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:03:51.288 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 21:03:51.288 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:03:51.288 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:03:51.288 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:03:51.298 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:03:51.298 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-17 21:03:51.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:03:51.348 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:03:51.548 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:03:51.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:03:51.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:03:51.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:03:51.588 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:03:51.588 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 21:03:51.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 21:03:51.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:03:51.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:03:51.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:03:51.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:03:51.788 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:03:51.788 -07 000000424 INF: Image SNR check: start
17-03-17 21:03:51.788 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:03:51.798 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:03:51.798 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:03:51.798 -07 000000424 INF: Image SNR check: pass  [peak (Max-Min)=63.02]
17-03-17 21:03:51.798 -07 000000424 INF: Autofocus start
17-03-17 21:03:51.798 -07 000000424 INF: MeasureProfile start
17-03-17 21:03:51.818 -07 000000424 INF: MeasureProfile done
17-03-17 21:03:51.818 -07 000000424 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:03:51.818 -07 000000424 INF: Autofocus finished
17-03-17 21:03:51.838 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:03:51.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:03:51.998 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:03:51.998 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:03:51.998 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.179496770048895. ----------
17-03-17 21:03:51.998 -07 000000610 INF: Cycle	46	Tile	1	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:03:52.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37724, sync = True, waitForSettling = True)
17-03-17 21:03:52.008 -07 000000610 INF: Z Motor: Moving to -0.172689 mm, started at -0.179497 mm, distance = 6.81 um
17-03-17 21:03:52.008 -07 000000610 INF: FPGA: Xmit ZDACW 37724\n [Z Motor]
17-03-17 21:03:52.008 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:03:52.018 -07 000000610 INF: FPGA: 'ZDACW 37724' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:52.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:03:52.018 -07 000000438 INF: FPGA: Recv ZDACR 37724
17-03-17 21:03:52.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:52.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:03:52.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:52.178 -07 000000438 INF: FPGA: Recv ZSGSRD 36167
17-03-17 21:03:52.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:03:52.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:52.188 -07 000000541 INF: FPGA: Recv ZSGSRD 36180
17-03-17 21:03:52.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:03:52.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:52.198 -07 000000618 INF: FPGA: Recv ZSGSRD 36177
17-03-17 21:03:52.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:52.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:52.208 -07 000000618 INF: FPGA: Recv ZSGSRD 36170
17-03-17 21:03:52.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:52.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:52.218 -07 000000618 INF: FPGA: Recv ZSGSRD 36169
17-03-17 21:03:52.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:52.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:52.228 -07 000000424 INF: FPGA: Recv ZSGSRD 36174
17-03-17 21:03:52.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:52.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:52.238 -07 000000424 INF: FPGA: Recv ZSGSRD 36175
17-03-17 21:03:52.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:52.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:52.248 -07 000000424 INF: FPGA: Recv ZSGSRD 36171
17-03-17 21:03:52.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:52.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:52.258 -07 000000541 INF: FPGA: Recv ZSGSRD 36167
17-03-17 21:03:52.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:52.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:52.268 -07 000000541 INF: FPGA: Recv ZSGSRD 36176
17-03-17 21:03:52.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:52.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:03:52.278 -07 000000626 INF: FPGA: Recv ZPIEZORD 32276
17-03-17 21:03:52.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:52.288 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.756 V. Piezo Error = -8.6 V.
17-03-17 21:03:52.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36173 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36172 (-171.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36167 (-171.8 uncal um), Max = 36180 (-171.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:03:52.288 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36173, posNoise = 7, negNoise = 6
17-03-17 21:03:52.288 -07 000000610 INF: Z Motor: After move to -0.172689, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:03:52.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:03:52.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:03:52.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:03:52.288 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:03:52.288 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:03:52.288 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:03:52.288 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:03:52.288 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:03:52.288 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:03:52.288 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:03:52.288 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:03:52.288 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:03:52.288 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:03:52.298 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:03:52.298 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:03:52.308 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:03:52.308 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:03:52.308 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 21:03:52.318 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:03:52.318 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:03:52.318 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:03:52.328 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 21:03:52.328 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-17 21:03:52.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37901 150\n [Camera]
17-03-17 21:03:52.528 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:03:52.958 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:03:52.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:03:52.958 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:03:52.958 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:03:52.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:03:52.958 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:03:52.968 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:03:52.968 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:03:52.968 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:03:52.968 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:03:53.148 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37901 810
17-03-17 21:03:53.298 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:03:53.358 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:03:53.358 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:03:53.358 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:03:53.358 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:03:53.358 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:03:53.358 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:03:53.368 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:03:53.368 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:03:53.368 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:03:53.368 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 21:03:53.508 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:03:53.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:03:53.508 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:03:53.508 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:03:53.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:03:53.508 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:03:53.508 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:03:53.508 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:03:53.508 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:03:53.508 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:03:53.698 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:03:53.698 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:03:53.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37901 150' command took 2 ms to send, 1353 ms to get response, and 1365 ms overall
17-03-17 21:03:53.698 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.173065
17-03-17 21:03:53.698 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17307 mm
17-03-17 21:03:53.698 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:03:53.698 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37806, sync = True, waitForSettling = False)
17-03-17 21:03:53.698 -07 000000618 INF: Z Motor: Moving to -0.173065 mm, started at -0.172706 mm, distance = -0.36 um
17-03-17 21:03:53.698 -07 000000618 INF: FPGA: Xmit ZDACW 37806\n [Z Motor]
17-03-17 21:03:53.708 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:03:53.708 -07 000000438 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-17 21:03:53.708 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:03:53.708 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 21:03:53.708 -07 000000618 INF: FPGA: 'ZDACW 37806' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:03:53.708 -07 000000627 INF: FPGA: Recv YRDPOS 122696
17-03-17 21:03:53.718 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:53.718 -07 000000438 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:03:53.718 -07 000000438 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:03:53.718 -07 000000438 INF: Y Motor: Moving 1332 steps2
17-03-17 21:03:53.718 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:03:53.718 -07 000000576 INF: FPGA: Recv ZDACR 37806
17-03-17 21:03:53.728 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:03:53.728 -07 000000618 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 21:03:53.728 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:03:53.918 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 21:03:53.918 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:03:53.918 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:03:53.918 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 21:03:53.918 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 21:03:53.918 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:03:53.918 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:03:53.918 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:03:53.918 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 21:03:53.928 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 21:03:54.098 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:03:54.098 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:03:54.128 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:03:54.138 -07 000000541 INF: FPGA: Recv YRDPOS 124380
17-03-17 21:03:54.138 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:03:54.138 -07 000000438 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:03:54.138 -07 000000438 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 21:03:54.138 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.832 mm, average velocity = 2.145 mm/sec
17-03-17 21:03:55.088 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:03:55.088 -07 000000576 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:03:55.098 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:03:55.098 -07 000000438 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:03:55.118 -07 000000438 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:03:55.118 -07 000000438 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:03:55.118 -07 000000438 INF: Y Motor: Moved to 60.7329 after 1414 ms (table move)
17-03-17 21:03:55.118 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173065 mm (DAC = 37806)
17-03-17 21:03:55.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.118 -07 000000438 INF: FPGA: Recv ZSGSRD 36227
17-03-17 21:03:55.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:03:55.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.128 -07 000000438 INF: FPGA: Recv ZSGSRD 36226
17-03-17 21:03:55.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.138 -07 000000438 INF: FPGA: Recv ZSGSRD 36232
17-03-17 21:03:55.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.148 -07 000000541 INF: FPGA: Recv ZSGSRD 36237
17-03-17 21:03:55.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.158 -07 000000459 INF: FPGA: Recv ZSGSRD 36229
17-03-17 21:03:55.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.168 -07 000000459 INF: FPGA: Recv ZSGSRD 36232
17-03-17 21:03:55.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.178 -07 000000459 INF: FPGA: Recv ZSGSRD 36230
17-03-17 21:03:55.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.188 -07 000000459 INF: FPGA: Recv ZSGSRD 36230
17-03-17 21:03:55.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.198 -07 000000459 INF: FPGA: Recv ZSGSRD 36226
17-03-17 21:03:55.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.208 -07 000000459 INF: FPGA: Recv ZSGSRD 36228
17-03-17 21:03:55.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:03:55.218 -07 000000459 INF: FPGA: Recv ZPIEZORD 32395
17-03-17 21:03:55.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.228 -07 000000610 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.769 V. Piezo Error = -8.5 V.
17-03-17 21:03:55.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36230 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36230 (-172.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36226 (-172.2 uncal um), Max = 36237 (-172.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:03:55.228 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36230, posNoise = 7, negNoise = 4
17-03-17 21:03:55.228 -07 000000610 INF: Z Motor: After move to -0.173065, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:03:55.228 -07 000000610 INF: Z Motor: Settle wait time = 1417 ms, measure time = 104 ms (allowed 150 ms), total time = 1521 ms
17-03-17 21:03:55.228 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:03:55.238 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.015368,
17-03-17 21:03:55.278 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 21:03:55.278 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:03:55.278 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.173072557907134. ----------
17-03-17 21:03:55.278 -07 000000610 INF: Cycle	46	Tile	2	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:03:55.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37629, sync = True, waitForSettling = True)
17-03-17 21:03:55.278 -07 000000610 INF: Z Motor: Moving to -0.172255 mm, started at -0.173073 mm, distance = 0.82 um
17-03-17 21:03:55.278 -07 000000610 INF: FPGA: Xmit ZDACW 37629\n [Z Motor]
17-03-17 21:03:55.278 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:03:55.288 -07 000000610 INF: FPGA: 'ZDACW 37629' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:03:55.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:03:55.288 -07 000000424 INF: FPGA: Recv ZDACR 37629
17-03-17 21:03:55.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:03:55.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.448 -07 000000476 INF: FPGA: Recv ZSGSRD 36101
17-03-17 21:03:55.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:03:55.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.458 -07 000000626 INF: FPGA: Recv ZSGSRD 36105
17-03-17 21:03:55.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.468 -07 000000424 INF: FPGA: Recv ZSGSRD 36106
17-03-17 21:03:55.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.478 -07 000000424 INF: FPGA: Recv ZSGSRD 36107
17-03-17 21:03:55.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.488 -07 000000424 INF: FPGA: Recv ZSGSRD 36104
17-03-17 21:03:55.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.498 -07 000000459 INF: FPGA: Recv ZSGSRD 36105
17-03-17 21:03:55.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.508 -07 000000459 INF: FPGA: Recv ZSGSRD 36107
17-03-17 21:03:55.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.518 -07 000000459 INF: FPGA: Recv ZSGSRD 36101
17-03-17 21:03:55.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.528 -07 000000459 INF: FPGA: Recv ZSGSRD 36098
17-03-17 21:03:55.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:55.538 -07 000000459 INF: FPGA: Recv ZSGSRD 36102
17-03-17 21:03:55.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:03:55.548 -07 000000459 INF: FPGA: Recv ZPIEZORD 32215
17-03-17 21:03:55.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:55.558 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.742 V. Piezo Error = -8.6 V.
17-03-17 21:03:55.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36104 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36104 (-171.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36098 (-171.3 uncal um), Max = 36107 (-171.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:03:55.558 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36104, posNoise = 3, negNoise = 6
17-03-17 21:03:55.558 -07 000000610 INF: Z Motor: After move to -0.172255, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:03:55.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 21:03:55.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:03:55.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:03:55.558 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:03:55.558 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:03:55.558 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:03:55.558 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:03:55.558 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:03:55.558 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:03:55.558 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:03:55.558 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:03:55.558 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:03:55.558 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:03:55.568 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:03:55.568 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:03:55.568 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:03:55.568 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:03:55.578 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:03:55.578 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:03:55.578 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:03:55.578 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:03:55.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37806 150\n [Camera]
17-03-17 21:03:55.778 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:03:56.208 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:03:56.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:03:56.208 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:03:56.208 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:03:56.208 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 21:03:56.208 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:03:56.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:03:56.208 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:03:56.208 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:03:56.208 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 21:03:56.508 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37806 810
17-03-17 21:03:56.548 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:03:56.598 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 21:03:56.598 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:03:56.598 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:03:56.598 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:03:56.598 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:03:56.608 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:03:56.608 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:03:56.608 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:03:56.608 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:03:56.618 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:03:56.758 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:03:56.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:03:56.758 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:03:56.758 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:03:56.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:03:56.758 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:03:56.758 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:03:56.768 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:03:56.768 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:03:56.768 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:03:56.838 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:03:56.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:03:56.948 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-17 21:03:56.948 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:03:56.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37806 150' command took 2 ms to send, 1353 ms to get response, and 1363 ms overall
17-03-17 21:03:56.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:03:56.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.172263107177273. ------
17-03-17 21:03:56.948 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:03:56.948 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17841 mm
17-03-17 21:03:56.948 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:03:56.958 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:03:56.958 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:03:56.958 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:03:56.958 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:03:56.958 -07 000000433 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 21:03:56.958 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38974, sync = True, waitForSettling = False)
17-03-17 21:03:56.958 -07 000000501 INF: Z Motor: Moving to -0.178412 mm, started at -0.172263 mm, distance = -6.15 um
17-03-17 21:03:56.968 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:03:56.968 -07 000000459 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:03:56.978 -07 000000501 INF: FPGA: Xmit ZDACW 38974\n [Z Motor]
17-03-17 21:03:56.978 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:03:56.978 -07 000000433 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:03:56.978 -07 000000433 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:03:56.978 -07 000000433 INF: Y Motor: Moving 1344 steps-21
17-03-17 21:03:56.978 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:03:56.988 -07 000000501 INF: FPGA: 'ZDACW 38974' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:03:56.988 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:03:56.988 -07 000000618 INF: FPGA: Recv ZDACR 38974
17-03-17 21:03:56.998 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:56.998 -07 000000501 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 21:03:56.998 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:03:57.158 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:03:57.158 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 21:03:57.168 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:03:57.168 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:03:57.168 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:03:57.168 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 21:03:57.168 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:03:57.168 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:03:57.168 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:03:57.168 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:03:57.168 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 21:03:57.178 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 21:03:57.368 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 21:03:57.378 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-17 21:03:57.408 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:03:57.418 -07 000000429 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:03:57.418 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:03:57.418 -07 000000433 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:03:57.418 -07 000000433 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:03:57.418 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.840 mm, average velocity = 2.094 mm/sec
17-03-17 21:03:58.368 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:03:58.368 -07 000000576 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:03:58.378 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:03:58.378 -07 000000433 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:03:58.398 -07 000000433 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:03:58.398 -07 000000433 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:03:58.398 -07 000000433 INF: Y Motor: Moved to 61.5635 after 1439 ms (table move)
17-03-17 21:03:58.398 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178412 mm (DAC = 38974)
17-03-17 21:03:58.398 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:58.398 -07 000000429 INF: FPGA: Recv ZSGSRD 37062
17-03-17 21:03:58.408 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:03:58.408 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:58.408 -07 000000501 INF: FPGA: Recv ZSGSRD 37065
17-03-17 21:03:58.418 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:58.418 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:58.418 -07 000000576 INF: FPGA: Recv ZSGSRD 37058
17-03-17 21:03:58.428 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:58.428 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:58.428 -07 000000382 INF: FPGA: Recv ZSGSRD 37063
17-03-17 21:03:58.438 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:58.438 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:58.438 -07 000000424 INF: FPGA: Recv ZSGSRD 37064
17-03-17 21:03:58.448 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:58.448 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:58.448 -07 000000576 INF: FPGA: Recv ZSGSRD 37067
17-03-17 21:03:58.458 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:58.458 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:58.458 -07 000000382 INF: FPGA: Recv ZSGSRD 37068
17-03-17 21:03:58.468 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:58.468 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:58.468 -07 000000431 INF: FPGA: Recv ZSGSRD 37064
17-03-17 21:03:58.478 -07 000000541 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:58.478 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:58.478 -07 000000433 INF: FPGA: Recv ZSGSRD 37060
17-03-17 21:03:58.488 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:58.488 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:58.488 -07 000000476 INF: FPGA: Recv ZSGSRD 37059
17-03-17 21:03:58.498 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:58.498 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:03:58.498 -07 000000431 INF: FPGA: Recv ZPIEZORD 33543
17-03-17 21:03:58.508 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:58.508 -07 000000541 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.947 V. Piezo Error = -7.8 V.
17-03-17 21:03:58.508 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37063 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37064 (-177.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37058 (-177.5 uncal um), Max = 37068 (-177.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:03:58.508 -07 000000541 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37063, posNoise = 5, negNoise = 5
17-03-17 21:03:58.508 -07 000000541 INF: Z Motor: After move to -0.178412, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:03:58.508 -07 000000541 INF: Z Motor: Settle wait time = 1441 ms, measure time = 104 ms (allowed 150 ms), total time = 1545 ms
17-03-17 21:03:58.508 -07 000000541 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:03:58.558 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 21:03:58.558 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:03:58.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:03:58.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:03:58.558 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:03:58.558 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:03:58.558 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:03:58.558 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:03:58.558 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:03:58.558 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:03:58.568 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:03:58.568 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:03:58.578 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:03:58.578 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 21:03:58.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:03:58.628 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:03:58.828 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:03:58.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:03:58.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:03:58.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591925008, 0x0, 559484976) start.
17-03-17 21:03:58.868 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:03:58.868 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:03:58.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 21:03:58.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591925008, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:03:58.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:03:58.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:03:58.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:03:58.968 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:03:58.968 -07 000000541 INF: Autofocus start
17-03-17 21:03:58.968 -07 000000541 INF: MeasureProfile start
17-03-17 21:03:58.968 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:03:58.978 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:03:58.978 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:03:58.978 -07 000000541 INF: MeasureProfile done
17-03-17 21:03:58.978 -07 000000541 INF: X=48  Z correction [um]=0.1739867
17-03-17 21:03:58.978 -07 000000541 INF: Autofocus finished
17-03-17 21:03:59.178 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:03:59.178 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:03:59.178 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.178423926621221. ----------
17-03-17 21:03:59.178 -07 000000610 INF: Cycle	46	Tile	3	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:03:59.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37524, sync = True, waitForSettling = True)
17-03-17 21:03:59.188 -07 000000610 INF: Z Motor: Moving to -0.171774 mm, started at -0.178424 mm, distance = 6.65 um
17-03-17 21:03:59.188 -07 000000610 INF: FPGA: Xmit ZDACW 37524\n [Z Motor]
17-03-17 21:03:59.188 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:03:59.198 -07 000000610 INF: FPGA: 'ZDACW 37524' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:03:59.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:03:59.198 -07 000000626 INF: FPGA: Recv ZDACR 37524
17-03-17 21:03:59.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:59.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:03:59.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:59.358 -07 000000431 INF: FPGA: Recv ZSGSRD 36029
17-03-17 21:03:59.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:03:59.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:59.368 -07 000000429 INF: FPGA: Recv ZSGSRD 36026
17-03-17 21:03:59.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:59.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:59.378 -07 000000459 INF: FPGA: Recv ZSGSRD 36032
17-03-17 21:03:59.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:59.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:59.388 -07 000000576 INF: FPGA: Recv ZSGSRD 36031
17-03-17 21:03:59.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:59.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:59.398 -07 000000431 INF: FPGA: Recv ZSGSRD 36031
17-03-17 21:03:59.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:59.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:59.408 -07 000000433 INF: FPGA: Recv ZSGSRD 36035
17-03-17 21:03:59.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:59.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:59.418 -07 000000627 INF: FPGA: Recv ZSGSRD 36023
17-03-17 21:03:59.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:59.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:59.428 -07 000000382 INF: FPGA: Recv ZSGSRD 36028
17-03-17 21:03:59.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:59.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:59.438 -07 000000431 INF: FPGA: Recv ZSGSRD 36030
17-03-17 21:03:59.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:59.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:03:59.448 -07 000000433 INF: FPGA: Recv ZSGSRD 36029
17-03-17 21:03:59.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:59.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:03:59.458 -07 000000541 INF: FPGA: Recv ZPIEZORD 32145
17-03-17 21:03:59.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:03:59.468 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.726 V. Piezo Error = -8.6 V.
17-03-17 21:03:59.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36029 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36030 (-170.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36023 (-170.9 uncal um), Max = 36035 (-170.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:03:59.468 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36029, posNoise = 6, negNoise = 6
17-03-17 21:03:59.468 -07 000000610 INF: Z Motor: After move to -0.171774, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:03:59.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:03:59.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:03:59.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:03:59.468 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:03:59.468 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:03:59.468 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:03:59.468 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:03:59.468 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:03:59.468 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:03:59.468 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:03:59.468 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:03:59.468 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:03:59.468 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:03:59.478 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:03:59.478 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:03:59.478 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:03:59.478 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:03:59.488 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:03:59.488 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 21:03:59.488 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:03:59.488 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 21:03:59.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37701 150\n [Camera]
17-03-17 21:03:59.698 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:04:00.118 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:04:00.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:04:00.118 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:00.118 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:00.118 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:04:00.118 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:04:00.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:04:00.118 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:00.118 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:00.118 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:04:00.308 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37701 810
17-03-17 21:04:00.458 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:04:00.498 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:04:00.498 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:04:00.498 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:00.498 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:04:00.498 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:04:00.498 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:00.498 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:04:00.498 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:04:00.508 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:04:00.508 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:04:00.598 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.986717,
17-03-17 21:04:00.668 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:04:00.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:04:00.668 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:00.668 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:00.668 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:04:00.668 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:04:00.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:04:00.668 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:00.668 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:00.668 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:04:00.858 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-17 21:04:00.858 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:04:00.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37701 150' command took 2 ms to send, 1354 ms to get response, and 1363 ms overall
17-03-17 21:04:00.858 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.172078
17-03-17 21:04:00.858 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17208 mm
17-03-17 21:04:00.858 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:04:00.858 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:04:00.858 -07 000000476 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 21:04:00.858 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 37590, sync = True, waitForSettling = False)
17-03-17 21:04:00.858 -07 000000627 INF: Z Motor: Moving to -0.172076 mm, started at -0.171781 mm, distance = -0.29 um
17-03-17 21:04:00.858 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:00.868 -07 000000627 INF: FPGA: Xmit ZDACW 37590\n [Z Motor]
17-03-17 21:04:00.868 -07 000000433 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:04:00.868 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 21:04:00.868 -07 000000476 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:00.868 -07 000000476 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:04:00.868 -07 000000476 INF: Y Motor: Moving 1343 steps-19
17-03-17 21:04:00.868 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:04:00.878 -07 000000627 INF: FPGA: 'ZDACW 37590' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:00.878 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:00.878 -07 000000438 INF: FPGA: Recv ZDACR 37590
17-03-17 21:04:00.888 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:04:00.888 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:00.888 -07 000000627 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 21:04:01.048 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:04:01.048 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:04:01.048 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:01.048 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:04:01.048 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:04:01.048 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:01.058 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:01.058 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:04:01.058 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:04:01.058 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:04:01.258 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:04:01.268 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 376 ms to get response, and 404 ms overall
17-03-17 21:04:01.308 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:01.308 -07 000000382 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:04:01.318 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:04:01.318 -07 000000476 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:01.318 -07 000000476 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 21:04:01.318 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.839 mm, average velocity = 2.077 mm/sec
17-03-17 21:04:01.838 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:04:01.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:04:02.268 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:02.268 -07 000000576 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:04:02.278 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:02.278 -07 000000476 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:02.298 -07 000000476 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:04:02.298 -07 000000476 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:04:02.298 -07 000000476 INF: Y Motor: Moved to 62.3950 after 1433 ms (table move)
17-03-17 21:04:02.298 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172076 mm (DAC = 37590)
17-03-17 21:04:02.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.298 -07 000000459 INF: FPGA: Recv ZSGSRD 36079
17-03-17 21:04:02.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:04:02.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.308 -07 000000424 INF: FPGA: Recv ZSGSRD 36072
17-03-17 21:04:02.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:04:02.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.318 -07 000000459 INF: FPGA: Recv ZSGSRD 36077
17-03-17 21:04:02.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.328 -07 000000576 INF: FPGA: Recv ZSGSRD 36082
17-03-17 21:04:02.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.338 -07 000000429 INF: FPGA: Recv ZSGSRD 36077
17-03-17 21:04:02.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.348 -07 000000433 INF: FPGA: Recv ZSGSRD 36075
17-03-17 21:04:02.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.358 -07 000000459 INF: FPGA: Recv ZSGSRD 36077
17-03-17 21:04:02.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.368 -07 000000576 INF: FPGA: Recv ZSGSRD 36076
17-03-17 21:04:02.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.378 -07 000000541 INF: FPGA: Recv ZSGSRD 36076
17-03-17 21:04:02.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.388 -07 000000626 INF: FPGA: Recv ZSGSRD 36080
17-03-17 21:04:02.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:02.398 -07 000000501 INF: FPGA: Recv ZPIEZORD 32236
17-03-17 21:04:02.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.408 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.736 V. Piezo Error = -8.5 V.
17-03-17 21:04:02.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36077 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36077 (-171.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36072 (-171.2 uncal um), Max = 36082 (-171.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:04:02.408 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36077, posNoise = 5, negNoise = 5
17-03-17 21:04:02.408 -07 000000610 INF: Z Motor: After move to -0.172076, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:02.408 -07 000000610 INF: Z Motor: Settle wait time = 1435 ms, measure time = 106 ms (allowed 150 ms), total time = 1541 ms
17-03-17 21:04:02.408 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 21:04:02.458 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 21:04:02.458 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:04:02.458 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.172089653449445. ----------
17-03-17 21:04:02.458 -07 000000610 INF: Cycle	46	Tile	4	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:04:02.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37414, sync = True, waitForSettling = True)
17-03-17 21:04:02.458 -07 000000610 INF: Z Motor: Moving to -0.171270 mm, started at -0.172090 mm, distance = 0.82 um
17-03-17 21:04:02.458 -07 000000610 INF: FPGA: Xmit ZDACW 37414\n [Z Motor]
17-03-17 21:04:02.458 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 21:04:02.468 -07 000000610 INF: FPGA: 'ZDACW 37414' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:04:02.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:02.468 -07 000000476 INF: FPGA: Recv ZDACR 37414
17-03-17 21:04:02.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:04:02.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.628 -07 000000424 INF: FPGA: Recv ZSGSRD 35957
17-03-17 21:04:02.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.638 -07 000000576 INF: FPGA: Recv ZSGSRD 35952
17-03-17 21:04:02.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.648 -07 000000459 INF: FPGA: Recv ZSGSRD 35954
17-03-17 21:04:02.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.658 -07 000000626 INF: FPGA: Recv ZSGSRD 35952
17-03-17 21:04:02.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.668 -07 000000459 INF: FPGA: Recv ZSGSRD 35947
17-03-17 21:04:02.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.678 -07 000000618 INF: FPGA: Recv ZSGSRD 35952
17-03-17 21:04:02.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.688 -07 000000429 INF: FPGA: Recv ZSGSRD 35952
17-03-17 21:04:02.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.698 -07 000000501 INF: FPGA: Recv ZSGSRD 35953
17-03-17 21:04:02.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.708 -07 000000459 INF: FPGA: Recv ZSGSRD 35958
17-03-17 21:04:02.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:02.718 -07 000000541 INF: FPGA: Recv ZSGSRD 35948
17-03-17 21:04:02.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:02.728 -07 000000431 INF: FPGA: Recv ZPIEZORD 32037
17-03-17 21:04:02.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:02.738 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.709 V. Piezo Error = -8.7 V.
17-03-17 21:04:02.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35952 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35952 (-170.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35947 (-170.4 uncal um), Max = 35958 (-170.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:04:02.738 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35952, posNoise = 6, negNoise = 5
17-03-17 21:04:02.738 -07 000000610 INF: Z Motor: After move to -0.171270, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:02.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:04:02.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:02.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:02.738 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:02.738 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:02.738 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:04:02.738 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:02.738 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:04:02.738 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:04:02.738 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:04:02.738 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:04:02.738 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:04:02.738 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:04:02.748 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:04:02.748 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:04:02.748 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:04:02.748 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:04:02.758 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:04:02.758 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:04:02.758 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:04:02.758 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:04:02.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37590 150\n [Camera]
17-03-17 21:04:02.968 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:04:03.388 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:04:03.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:04:03.388 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:03.388 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:03.388 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 21:04:03.388 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:04:03.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:04:03.398 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:03.398 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:03.398 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 21:04:03.578 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37590 810
17-03-17 21:04:03.728 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:04:03.768 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:04:03.768 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:04:03.768 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:03.768 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:04:03.768 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:04:03.768 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:03.778 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:03.778 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:04:03.778 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:03.778 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:04:03.938 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:04:03.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:04:03.938 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:03.938 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:03.938 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:04:03.938 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:04:03.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:04:03.948 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:03.948 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:03.948 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:04:04.128 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-17 21:04:04.128 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:04:04.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37590 150' command took 2 ms to send, 1355 ms to get response, and 1363 ms overall
17-03-17 21:04:04.128 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171823
17-03-17 21:04:04.138 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17182 mm
17-03-17 21:04:04.138 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:04:04.138 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:04:04.138 -07 000000433 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 21:04:04.138 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:04.138 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 37535, sync = True, waitForSettling = False)
17-03-17 21:04:04.138 -07 000000476 INF: Z Motor: Moving to -0.171824 mm, started at -0.171287 mm, distance = -0.54 um
17-03-17 21:04:04.138 -07 000000618 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:04:04.148 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:04:04.148 -07 000000433 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:04.148 -07 000000433 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:04:04.148 -07 000000433 INF: Y Motor: Moving 1340 steps-16
17-03-17 21:04:04.148 -07 000000476 INF: FPGA: Xmit ZDACW 37535\n [Z Motor]
17-03-17 21:04:04.148 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:04:04.158 -07 000000476 INF: FPGA: 'ZDACW 37535' command took 1 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:04:04.158 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:04.158 -07 000000459 INF: FPGA: Recv ZDACR 37535
17-03-17 21:04:04.168 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:04:04.168 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:04.168 -07 000000476 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 21:04:04.328 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 21:04:04.328 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:04:04.328 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:04.328 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 21:04:04.328 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:04:04.328 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:04.328 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:04.328 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:04:04.338 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:04.338 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:04:04.538 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:04:04.538 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:04:04.578 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:04.578 -07 000000382 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:04:04.588 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:04:04.588 -07 000000433 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:04.588 -07 000000433 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:04:04.588 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 21:04:05.538 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:05.538 -07 000000459 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:04:05.548 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:05.548 -07 000000433 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:05.568 -07 000000433 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:04:05.568 -07 000000433 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:04:05.568 -07 000000433 INF: Y Motor: Moved to 63.2236 after 1430 ms (table move)
17-03-17 21:04:05.568 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171824 mm (DAC = 37535)
17-03-17 21:04:05.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:05.578 -07 000000476 INF: FPGA: Recv ZSGSRD 36025
17-03-17 21:04:05.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 21:04:05.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:05.578 -07 000000438 INF: FPGA: Recv ZSGSRD 36044
17-03-17 21:04:05.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:04:05.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:05.588 -07 000000541 INF: FPGA: Recv ZSGSRD 36033
17-03-17 21:04:05.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:05.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:05.598 -07 000000433 INF: FPGA: Recv ZSGSRD 36035
17-03-17 21:04:05.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:05.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:05.608 -07 000000429 INF: FPGA: Recv ZSGSRD 36041
17-03-17 21:04:05.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:05.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:05.618 -07 000000424 INF: FPGA: Recv ZSGSRD 36040
17-03-17 21:04:05.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:05.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:05.628 -07 000000626 INF: FPGA: Recv ZSGSRD 36031
17-03-17 21:04:05.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:05.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:05.648 -07 000000618 INF: FPGA: Recv ZSGSRD 36040
17-03-17 21:04:05.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:04:05.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:05.658 -07 000000431 INF: FPGA: Recv ZSGSRD 36032
17-03-17 21:04:05.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:05.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:05.668 -07 000000012 INF: FPGA: Recv ZSGSRD 36034
17-03-17 21:04:05.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:05.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:05.678 -07 000000429 INF: FPGA: Recv ZPIEZORD 32178
17-03-17 21:04:05.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:05.688 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.727 V. Piezo Error = -8.5 V.
17-03-17 21:04:05.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36036 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36034 (-170.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36025 (-170.9 uncal um), Max = 36044 (-171.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 21:04:05.688 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36036, posNoise = 8, negNoise = 11
17-03-17 21:04:05.688 -07 000000610 INF: Z Motor: After move to -0.171824, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:05.688 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 114 ms (allowed 150 ms), total time = 1545 ms
17-03-17 21:04:05.688 -07 000000610 INF: Z Motor: Waiting extra 36 ms after reading position to reach expected total of 150 ms
17-03-17 21:04:05.728 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 21:04:05.728 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:04:05.728 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.171826260751633. ----------
17-03-17 21:04:05.728 -07 000000610 INF: Cycle	46	Tile	5	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:04:05.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37358, sync = True, waitForSettling = True)
17-03-17 21:04:05.728 -07 000000610 INF: Z Motor: Moving to -0.171014 mm, started at -0.171826 mm, distance = 0.81 um
17-03-17 21:04:05.728 -07 000000610 INF: FPGA: Xmit ZDACW 37358\n [Z Motor]
17-03-17 21:04:05.728 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 21:04:05.738 -07 000000610 INF: FPGA: 'ZDACW 37358' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:04:05.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:05.738 -07 000000459 INF: FPGA: Recv ZDACR 37358
17-03-17 21:04:05.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:05.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:04:05.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:05.898 -07 000000424 INF: FPGA: Recv ZSGSRD 35911
17-03-17 21:04:05.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:05.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:05.908 -07 000000541 INF: FPGA: Recv ZSGSRD 35912
17-03-17 21:04:05.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:05.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:05.918 -07 000000438 INF: FPGA: Recv ZSGSRD 35915
17-03-17 21:04:05.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:05.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:05.928 -07 000000476 INF: FPGA: Recv ZSGSRD 35909
17-03-17 21:04:05.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:05.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:05.938 -07 000000424 INF: FPGA: Recv ZSGSRD 35914
17-03-17 21:04:05.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:05.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:05.958 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.98264,
17-03-17 21:04:05.958 -07 000000459 INF: FPGA: Recv ZSGSRD 35909
17-03-17 21:04:05.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:04:05.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:05.988 -07 000000626 INF: FPGA: Recv ZSGSRD 35915
17-03-17 21:04:05.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:04:06.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:06.018 -07 000000424 INF: FPGA: Recv ZSGSRD 35915
17-03-17 21:04:06.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:04:06.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:06.028 -07 000000433 INF: FPGA: Recv ZSGSRD 35912
17-03-17 21:04:06.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:06.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:06.048 -07 000000627 INF: FPGA: Recv ZSGSRD 35914
17-03-17 21:04:06.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:04:06.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:06.058 -07 000000501 INF: FPGA: Recv ZPIEZORD 31985
17-03-17 21:04:06.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:06.068 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -8.7 V.
17-03-17 21:04:06.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35913 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35913 (-170.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35909 (-170.1 uncal um), Max = 35915 (-170.2 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:04:06.068 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35913, posNoise = 2, negNoise = 4
17-03-17 21:04:06.068 -07 000000610 INF: Z Motor: After move to -0.171014, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:06.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 338 ms)
17-03-17 21:04:06.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:06.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:06.068 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:06.068 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:06.068 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:04:06.068 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:04:06.068 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:04:06.068 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:06.068 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:04:06.068 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:04:06.068 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:04:06.068 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:04:06.078 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:04:06.078 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:04:06.078 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:04:06.078 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:04:06.088 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:04:06.088 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:04:06.088 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:04:06.088 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:04:06.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37535 150\n [Camera]
17-03-17 21:04:06.298 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:04:06.718 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:04:06.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:04:06.718 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:06.718 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:06.718 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 21:04:06.718 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:04:06.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:04:06.728 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:06.728 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:06.728 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 21:04:06.848 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:04:06.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:04:06.908 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37535 810
17-03-17 21:04:07.058 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:04:07.118 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:04:07.118 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:04:07.118 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:07.118 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:07.118 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:04:07.128 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 21:04:07.128 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:04:07.128 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:07.128 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:04:07.138 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 21:04:07.268 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:04:07.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:04:07.268 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:07.268 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:07.268 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 21:04:07.268 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:04:07.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:04:07.268 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:07.268 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:07.268 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 21:04:07.458 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:04:07.458 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:04:07.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37535 150' command took 2 ms to send, 1355 ms to get response, and 1364 ms overall
17-03-17 21:04:07.468 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.171428
17-03-17 21:04:07.468 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17143 mm
17-03-17 21:04:07.468 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:04:07.468 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 37448, sync = True, waitForSettling = False)
17-03-17 21:04:07.468 -07 000000476 INF: Z Motor: Moving to -0.171426 mm, started at -0.171036 mm, distance = -0.39 um
17-03-17 21:04:07.468 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:04:07.478 -07 000000433 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 21:04:07.478 -07 000000476 INF: FPGA: Xmit ZDACW 37448\n [Z Motor]
17-03-17 21:04:07.478 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:04:07.488 -07 000000476 INF: FPGA: 'ZDACW 37448' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:07.488 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:07.488 -07 000000431 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:04:07.498 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:04:07.498 -07 000000433 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:07.498 -07 000000433 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:04:07.498 -07 000000433 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:04:07.498 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:07.498 -07 000000618 INF: FPGA: Recv ZDACR 37448
17-03-17 21:04:07.508 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:04:07.508 -07 000000476 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:04:07.508 -07 000000476 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 21:04:07.648 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:04:07.648 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:04:07.648 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:07.648 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:04:07.648 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:04:07.648 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:07.658 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:07.658 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:07.658 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:04:07.658 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:04:07.878 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 21:04:07.878 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:04:07.918 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:07.928 -07 000000618 INF: FPGA: Recv YRDPOS 131187
17-03-17 21:04:07.928 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:04:07.928 -07 000000433 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:07.928 -07 000000433 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 21:04:07.928 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.168 mm/sec
17-03-17 21:04:08.878 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:08.878 -07 000000431 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:04:08.888 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:08.888 -07 000000433 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:08.908 -07 000000433 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:04:08.908 -07 000000433 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:04:08.908 -07 000000433 INF: Y Motor: Moved to 64.0566 after 1432 ms (table move)
17-03-17 21:04:08.908 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171426 mm (DAC = 37448)
17-03-17 21:04:08.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:08.908 -07 000000012 INF: FPGA: Recv ZSGSRD 35972
17-03-17 21:04:08.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:04:08.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:08.918 -07 000000627 INF: FPGA: Recv ZSGSRD 35981
17-03-17 21:04:08.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:08.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:08.928 -07 000000382 INF: FPGA: Recv ZSGSRD 35977
17-03-17 21:04:08.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:08.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:08.938 -07 000000541 INF: FPGA: Recv ZSGSRD 35980
17-03-17 21:04:08.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:08.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:08.948 -07 000000012 INF: FPGA: Recv ZSGSRD 35981
17-03-17 21:04:08.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:08.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:08.958 -07 000000627 INF: FPGA: Recv ZSGSRD 35979
17-03-17 21:04:08.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:08.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:08.968 -07 000000382 INF: FPGA: Recv ZSGSRD 35976
17-03-17 21:04:08.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:08.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:08.978 -07 000000429 INF: FPGA: Recv ZSGSRD 35970
17-03-17 21:04:08.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:08.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:08.988 -07 000000627 INF: FPGA: Recv ZSGSRD 35974
17-03-17 21:04:08.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:08.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:08.998 -07 000000459 INF: FPGA: Recv ZSGSRD 35979
17-03-17 21:04:09.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:09.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:09.008 -07 000000382 INF: FPGA: Recv ZPIEZORD 32116
17-03-17 21:04:09.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:09.018 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.714 V. Piezo Error = -8.5 V.
17-03-17 21:04:09.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35977 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35978 (-170.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35970 (-170.5 uncal um), Max = 35981 (-170.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:04:09.018 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35977, posNoise = 4, negNoise = 7
17-03-17 21:04:09.018 -07 000000610 INF: Z Motor: After move to -0.171426, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:09.018 -07 000000610 INF: Z Motor: Settle wait time = 1435 ms, measure time = 106 ms (allowed 150 ms), total time = 1541 ms
17-03-17 21:04:09.018 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 21:04:09.068 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 21:04:09.068 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:04:09.068 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.171447232235269. ----------
17-03-17 21:04:09.068 -07 000000610 INF: Cycle	46	Tile	6	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:04:09.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37272, sync = True, waitForSettling = True)
17-03-17 21:04:09.068 -07 000000610 INF: Z Motor: Moving to -0.170620 mm, started at -0.171447 mm, distance = 0.83 um
17-03-17 21:04:09.068 -07 000000610 INF: FPGA: Xmit ZDACW 37272\n [Z Motor]
17-03-17 21:04:09.068 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:04:09.078 -07 000000610 INF: FPGA: 'ZDACW 37272' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:04:09.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:09.078 -07 000000433 INF: FPGA: Recv ZDACR 37272
17-03-17 21:04:09.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:09.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:04:09.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:09.248 -07 000000576 INF: FPGA: Recv ZSGSRD 35851
17-03-17 21:04:09.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 4 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:09.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:09.248 -07 000000501 INF: FPGA: Recv ZSGSRD 35858
17-03-17 21:04:09.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:09.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:09.258 -07 000000424 INF: FPGA: Recv ZSGSRD 35849
17-03-17 21:04:09.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:09.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:09.268 -07 000000541 INF: FPGA: Recv ZSGSRD 35848
17-03-17 21:04:09.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:09.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:09.278 -07 000000627 INF: FPGA: Recv ZSGSRD 35848
17-03-17 21:04:09.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:09.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:09.288 -07 000000429 INF: FPGA: Recv ZSGSRD 35855
17-03-17 21:04:09.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:09.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:09.298 -07 000000424 INF: FPGA: Recv ZSGSRD 35844
17-03-17 21:04:09.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:09.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:09.308 -07 000000541 INF: FPGA: Recv ZSGSRD 35849
17-03-17 21:04:09.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:09.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:09.318 -07 000000431 INF: FPGA: Recv ZSGSRD 35853
17-03-17 21:04:09.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:09.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:09.328 -07 000000501 INF: FPGA: Recv ZSGSRD 35857
17-03-17 21:04:09.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:09.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:09.338 -07 000000576 INF: FPGA: Recv ZPIEZORD 31920
17-03-17 21:04:09.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:09.348 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -8.7 V.
17-03-17 21:04:09.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35851 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35850 (-169.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35844 (-169.7 uncal um), Max = 35858 (-169.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:04:09.348 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35851, posNoise = 7, negNoise = 7
17-03-17 21:04:09.348 -07 000000610 INF: Z Motor: After move to -0.170620, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:09.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 21:04:09.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:09.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:09.348 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:09.348 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:09.348 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:04:09.348 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:09.348 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:04:09.348 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:04:09.348 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:04:09.348 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:04:09.348 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:04:09.348 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:04:09.358 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:04:09.358 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:04:09.358 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:04:09.358 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:04:09.368 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:04:09.368 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:04:09.368 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:04:09.368 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:04:09.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37448 150\n [Camera]
17-03-17 21:04:09.568 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:04:09.998 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:04:09.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:04:09.998 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:09.998 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:09.998 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 21:04:09.998 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:04:09.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:04:09.998 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:09.998 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:09.998 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 21:04:10.188 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37448 810
17-03-17 21:04:10.338 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:04:10.378 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:04:10.378 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:04:10.378 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:10.378 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:04:10.378 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:04:10.378 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:10.378 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:10.388 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:10.388 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:04:10.388 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:04:10.548 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1165
17-03-17 21:04:10.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1165
17-03-17 21:04:10.548 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:10.548 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:10.548 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 21:04:10.548 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1165
17-03-17 21:04:10.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1165
17-03-17 21:04:10.548 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:10.548 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:10.548 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 21:04:10.738 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-17 21:04:10.738 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:04:10.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37448 150' command took 2 ms to send, 1353 ms to get response, and 1363 ms overall
17-03-17 21:04:10.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:04:10.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.170637781505407. ------
17-03-17 21:04:10.738 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:04:10.738 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17712 mm
17-03-17 21:04:10.738 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:04:10.748 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:04:10.748 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:04:10.748 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:04:10.748 -07 000000459 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 21:04:10.748 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:10.748 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38691, sync = True, waitForSettling = False)
17-03-17 21:04:10.748 -07 000000012 INF: Z Motor: Moving to -0.177116 mm, started at -0.170638 mm, distance = -6.48 um
17-03-17 21:04:10.748 -07 000000429 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:04:10.758 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:04:10.758 -07 000000459 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:10.758 -07 000000459 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:04:10.758 -07 000000459 INF: Y Motor: Moving 1338 steps-13
17-03-17 21:04:10.758 -07 000000012 INF: FPGA: Xmit ZDACW 38691\n [Z Motor]
17-03-17 21:04:10.758 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:04:10.768 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:04:10.768 -07 000000012 INF: FPGA: 'ZDACW 38691' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:04:10.778 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:04:10.788 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:10.788 -07 000000382 INF: FPGA: Recv ZDACR 38691
17-03-17 21:04:10.798 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:04:10.798 -07 000000012 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 21:04:10.928 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:04:10.928 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:04:10.928 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:10.928 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:04:10.928 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:04:10.928 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:10.928 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:10.928 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:10.928 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:04:10.938 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:04:10.968 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:04:10.968 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 21:04:11.148 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:04:11.148 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 21:04:11.188 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:11.198 -07 000000618 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:04:11.198 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:04:11.198 -07 000000459 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:11.198 -07 000000459 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:04:11.198 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.836 mm, average velocity = 2.095 mm/sec
17-03-17 21:04:11.338 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.975845,
17-03-17 21:04:11.848 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:04:11.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:04:12.148 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:12.148 -07 000000012 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:04:12.158 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:12.158 -07 000000459 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:12.178 -07 000000459 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:04:12.178 -07 000000459 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:04:12.178 -07 000000459 INF: Y Motor: Moved to 64.8784 after 1432 ms (table move)
17-03-17 21:04:12.178 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177116 mm (DAC = 38691)
17-03-17 21:04:12.178 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:12.188 -07 000000501 INF: FPGA: Recv ZSGSRD 36863
17-03-17 21:04:12.188 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:04:12.188 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:12.188 -07 000000424 INF: FPGA: Recv ZSGSRD 36865
17-03-17 21:04:12.198 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:12.198 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:12.198 -07 000000431 INF: FPGA: Recv ZSGSRD 36869
17-03-17 21:04:12.208 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:12.208 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:12.208 -07 000000459 INF: FPGA: Recv ZSGSRD 36862
17-03-17 21:04:12.218 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:12.218 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:12.218 -07 000000501 INF: FPGA: Recv ZSGSRD 36861
17-03-17 21:04:12.228 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:12.228 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:12.228 -07 000000424 INF: FPGA: Recv ZSGSRD 36858
17-03-17 21:04:12.238 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:12.238 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:12.238 -07 000000431 INF: FPGA: Recv ZSGSRD 36858
17-03-17 21:04:12.248 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:12.248 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:12.248 -07 000000618 INF: FPGA: Recv ZSGSRD 36859
17-03-17 21:04:12.258 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:12.258 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:12.258 -07 000000501 INF: FPGA: Recv ZSGSRD 36860
17-03-17 21:04:12.268 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:12.268 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:12.268 -07 000000424 INF: FPGA: Recv ZSGSRD 36864
17-03-17 21:04:12.278 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:12.278 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:12.278 -07 000000501 INF: FPGA: Recv ZPIEZORD 33261
17-03-17 21:04:12.288 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:12.288 -07 000000541 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.904 V. Piezo Error = -8.0 V.
17-03-17 21:04:12.288 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36862 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36862 (-176.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36858 (-176.2 uncal um), Max = 36869 (-176.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:04:12.288 -07 000000541 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36862, posNoise = 7, negNoise = 4
17-03-17 21:04:12.288 -07 000000541 INF: Z Motor: After move to -0.177116, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:12.288 -07 000000541 INF: Z Motor: Settle wait time = 1434 ms, measure time = 103 ms (allowed 150 ms), total time = 1537 ms
17-03-17 21:04:12.288 -07 000000541 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:04:12.338 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 21:04:12.338 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:04:12.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:12.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:12.338 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:12.338 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:12.338 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:04:12.338 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:12.338 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:04:12.338 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:04:12.348 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:04:12.348 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:04:12.358 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:04:12.358 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:04:12.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:04:12.408 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:04:12.608 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:04:12.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:04:12.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:04:12.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 21:04:12.648 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:04:12.648 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 21:04:12.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 21:04:12.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:04:12.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:12.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:04:12.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 21:04:12.748 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:04:12.748 -07 000000433 INF: Autofocus start
17-03-17 21:04:12.748 -07 000000433 INF: MeasureProfile start
17-03-17 21:04:12.748 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:04:12.758 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:04:12.758 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:04:12.758 -07 000000433 INF: MeasureProfile done
17-03-17 21:04:12.758 -07 000000433 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:04:12.758 -07 000000433 INF: Autofocus finished
17-03-17 21:04:12.958 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:04:12.958 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 21:04:12.958 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.177132659980727. ----------
17-03-17 21:04:12.958 -07 000000610 INF: Cycle	46	Tile	7	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:04:12.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37206, sync = True, waitForSettling = True)
17-03-17 21:04:12.968 -07 000000610 INF: Z Motor: Moving to -0.170318 mm, started at -0.177133 mm, distance = 6.81 um
17-03-17 21:04:12.968 -07 000000610 INF: FPGA: Xmit ZDACW 37206\n [Z Motor]
17-03-17 21:04:12.968 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:04:12.978 -07 000000610 INF: FPGA: 'ZDACW 37206' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:04:12.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:12.978 -07 000000429 INF: FPGA: Recv ZDACR 37206
17-03-17 21:04:12.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:12.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:04:13.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:13.138 -07 000000459 INF: FPGA: Recv ZSGSRD 35803
17-03-17 21:04:13.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:13.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:13.148 -07 000000429 INF: FPGA: Recv ZSGSRD 35800
17-03-17 21:04:13.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:13.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:13.158 -07 000000626 INF: FPGA: Recv ZSGSRD 35808
17-03-17 21:04:13.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:13.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:13.168 -07 000000382 INF: FPGA: Recv ZSGSRD 35807
17-03-17 21:04:13.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:13.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:13.178 -07 000000433 INF: FPGA: Recv ZSGSRD 35801
17-03-17 21:04:13.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:13.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:13.188 -07 000000618 INF: FPGA: Recv ZSGSRD 35801
17-03-17 21:04:13.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:13.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:13.198 -07 000000626 INF: FPGA: Recv ZSGSRD 35804
17-03-17 21:04:13.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:13.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:13.208 -07 000000438 INF: FPGA: Recv ZSGSRD 35805
17-03-17 21:04:13.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:13.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:13.218 -07 000000627 INF: FPGA: Recv ZSGSRD 35800
17-03-17 21:04:13.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:13.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:13.228 -07 000000433 INF: FPGA: Recv ZSGSRD 35801
17-03-17 21:04:13.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:13.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:13.238 -07 000000424 INF: FPGA: Recv ZPIEZORD 31876
17-03-17 21:04:13.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:13.248 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -8.7 V.
17-03-17 21:04:13.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35803 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35802 (-169.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35800 (-169.4 uncal um), Max = 35808 (-169.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:04:13.248 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35803, posNoise = 5, negNoise = 3
17-03-17 21:04:13.248 -07 000000610 INF: Z Motor: After move to -0.170318, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:13.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:04:13.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:13.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:13.248 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:13.248 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:13.248 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:04:13.248 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:13.248 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:04:13.248 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:04:13.248 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:04:13.248 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:04:13.248 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:04:13.248 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:04:13.248 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:04:13.258 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:04:13.258 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:04:13.258 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:04:13.268 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:04:13.268 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:04:13.268 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:04:13.268 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:04:13.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37383 150\n [Camera]
17-03-17 21:04:13.468 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:04:13.888 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:04:13.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:04:13.898 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:13.898 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:13.898 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 21:04:13.898 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:04:13.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:04:13.898 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:13.898 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:13.898 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-17 21:04:14.088 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37383 810
17-03-17 21:04:14.238 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:04:14.278 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:04:14.278 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:04:14.278 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:14.278 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:04:14.278 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:04:14.278 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:14.278 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:14.278 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:04:14.278 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:14.288 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:04:14.438 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:04:14.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:04:14.438 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:14.438 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:14.438 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start.
17-03-17 21:04:14.448 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:04:14.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:04:14.448 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:14.448 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:14.448 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) start.
17-03-17 21:04:14.628 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:04:14.628 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:04:14.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37383 150' command took 2 ms to send, 1357 ms to get response, and 1364 ms overall
17-03-17 21:04:14.638 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170969
17-03-17 21:04:14.638 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17097 mm
17-03-17 21:04:14.638 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:04:14.638 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:04:14.638 -07 000000424 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 21:04:14.638 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:14.638 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 37348, sync = True, waitForSettling = False)
17-03-17 21:04:14.638 -07 000000541 INF: Z Motor: Moving to -0.170968 mm, started at -0.170329 mm, distance = -0.64 um
17-03-17 21:04:14.638 -07 000000382 INF: FPGA: Recv YRDPOS 132872
17-03-17 21:04:14.648 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:04:14.648 -07 000000424 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:14.648 -07 000000541 INF: FPGA: Xmit ZDACW 37348\n [Z Motor]
17-03-17 21:04:14.648 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:04:14.648 -07 000000424 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:04:14.648 -07 000000424 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:04:14.658 -07 000000541 INF: FPGA: 'ZDACW 37348' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:04:14.658 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:14.658 -07 000000627 INF: FPGA: Recv ZDACR 37348
17-03-17 21:04:14.668 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:04:14.668 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:14.668 -07 000000541 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 21:04:14.828 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:04:14.828 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:04:14.828 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:14.828 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2988216424, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:04:14.828 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:04:14.828 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:14.828 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:14.828 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:04:14.828 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:04:14.838 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:04:15.048 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 21:04:15.048 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 397 ms overall
17-03-17 21:04:15.078 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:15.088 -07 000000459 INF: FPGA: Recv YRDPOS 134581
17-03-17 21:04:15.088 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:04:15.088 -07 000000424 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:15.088 -07 000000424 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:04:15.088 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 21:04:16.038 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:16.038 -07 000000476 INF: FPGA: Recv YRDPOS 134581
17-03-17 21:04:16.048 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:16.048 -07 000000424 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:16.068 -07 000000424 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:04:16.078 -07 000000424 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:04:16.078 -07 000000424 INF: Y Motor: Moved to 65.7134 after 1435 ms (table move)
17-03-17 21:04:16.078 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170968 mm (DAC = 37348)
17-03-17 21:04:16.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.078 -07 000000433 INF: FPGA: Recv ZSGSRD 35910
17-03-17 21:04:16.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:04:16.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.088 -07 000000429 INF: FPGA: Recv ZSGSRD 35909
17-03-17 21:04:16.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:16.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.098 -07 000000459 INF: FPGA: Recv ZSGSRD 35900
17-03-17 21:04:16.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:16.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.108 -07 000000541 INF: FPGA: Recv ZSGSRD 35912
17-03-17 21:04:16.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:16.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.118 -07 000000438 INF: FPGA: Recv ZSGSRD 35907
17-03-17 21:04:16.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:16.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.128 -07 000000626 INF: FPGA: Recv ZSGSRD 35898
17-03-17 21:04:16.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:16.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.138 -07 000000476 INF: FPGA: Recv ZSGSRD 35907
17-03-17 21:04:16.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:16.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.148 -07 000000501 INF: FPGA: Recv ZSGSRD 35902
17-03-17 21:04:16.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:16.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.158 -07 000000438 INF: FPGA: Recv ZSGSRD 35908
17-03-17 21:04:16.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:16.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.168 -07 000000431 INF: FPGA: Recv ZSGSRD 35904
17-03-17 21:04:16.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:16.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:16.178 -07 000000459 INF: FPGA: Recv ZPIEZORD 32016
17-03-17 21:04:16.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:16.188 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -8.6 V.
17-03-17 21:04:16.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35906 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35907 (-170.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35898 (-170.1 uncal um), Max = 35912 (-170.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:04:16.188 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35906, posNoise = 6, negNoise = 8
17-03-17 21:04:16.188 -07 000000610 INF: Z Motor: After move to -0.170968, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:16.188 -07 000000610 INF: Z Motor: Settle wait time = 1437 ms, measure time = 108 ms (allowed 150 ms), total time = 1545 ms
17-03-17 21:04:16.188 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 21:04:16.238 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 21:04:16.238 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:04:16.238 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.170991113173204. ----------
17-03-17 21:04:16.238 -07 000000610 INF: Cycle	46	Tile	8	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:04:16.238 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37172, sync = True, waitForSettling = True)
17-03-17 21:04:16.238 -07 000000610 INF: Z Motor: Moving to -0.170163 mm, started at -0.170991 mm, distance = 0.83 um
17-03-17 21:04:16.238 -07 000000610 INF: FPGA: Xmit ZDACW 37172\n [Z Motor]
17-03-17 21:04:16.248 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 21:04:16.248 -07 000000610 INF: FPGA: 'ZDACW 37172' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 21:04:16.248 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:16.248 -07 000000424 INF: FPGA: Recv ZDACR 37172
17-03-17 21:04:16.258 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:04:16.258 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:04:16.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.408 -07 000000438 INF: FPGA: Recv ZSGSRD 35781
17-03-17 21:04:16.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:16.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.418 -07 000000382 INF: FPGA: Recv ZSGSRD 35784
17-03-17 21:04:16.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:16.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.428 -07 000000433 INF: FPGA: Recv ZSGSRD 35783
17-03-17 21:04:16.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:16.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.438 -07 000000012 INF: FPGA: Recv ZSGSRD 35778
17-03-17 21:04:16.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:16.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.448 -07 000000438 INF: FPGA: Recv ZSGSRD 35774
17-03-17 21:04:16.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:16.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.458 -07 000000576 INF: FPGA: Recv ZSGSRD 35778
17-03-17 21:04:16.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:16.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.468 -07 000000012 INF: FPGA: Recv ZSGSRD 35778
17-03-17 21:04:16.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:16.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.478 -07 000000626 INF: FPGA: Recv ZSGSRD 35773
17-03-17 21:04:16.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:16.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.488 -07 000000431 INF: FPGA: Recv ZSGSRD 35782
17-03-17 21:04:16.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:16.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:16.498 -07 000000012 INF: FPGA: Recv ZSGSRD 35779
17-03-17 21:04:16.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:04:16.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:16.508 -07 000000433 INF: FPGA: Recv ZPIEZORD 31869
17-03-17 21:04:16.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:16.518 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.672 V. Piezo Error = -8.6 V.
17-03-17 21:04:16.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35779 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35778 (-169.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35773 (-169.3 uncal um), Max = 35784 (-169.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:04:16.518 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35779, posNoise = 5, negNoise = 6
17-03-17 21:04:16.518 -07 000000610 INF: Z Motor: After move to -0.170163, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:16.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:04:16.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:16.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:16.518 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:16.518 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:04:16.518 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:16.518 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:16.518 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:04:16.518 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:04:16.518 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:04:16.528 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:04:16.528 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:04:16.528 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:04:16.528 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 4 ms.
17-03-17 21:04:16.528 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:04:16.528 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:04:16.528 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:04:16.538 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:04:16.538 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:04:16.538 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:04:16.538 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:04:16.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37348 150\n [Camera]
17-03-17 21:04:16.698 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.966297,
17-03-17 21:04:16.748 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 21:04:16.838 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:04:16.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:04:17.168 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:04:17.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:04:17.168 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:17.168 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:17.168 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) start.
17-03-17 21:04:17.168 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:04:17.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:04:17.178 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:17.178 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:17.178 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1059065904, 0x0, 418435064) start.
17-03-17 21:04:17.358 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37348 810
17-03-17 21:04:17.508 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:04:17.558 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 3023638688, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:04:17.558 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:04:17.558 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:17.558 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1059065904, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 21:04:17.558 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:04:17.558 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:17.568 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:17.568 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:04:17.568 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:04:17.578 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:04:17.718 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:04:17.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:04:17.718 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:17.718 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:17.718 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1094488168, 0x0, 391868352) start.
17-03-17 21:04:17.718 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:04:17.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:04:17.718 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:17.718 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:17.718 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1129910432, 0x0, 418435064) start.
17-03-17 21:04:17.908 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:04:17.908 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:04:17.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37348 150' command took 2 ms to send, 1355 ms to get response, and 1363 ms overall
17-03-17 21:04:17.908 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.170519
17-03-17 21:04:17.908 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17052 mm
17-03-17 21:04:17.908 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:04:17.908 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:04:17.908 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 37250, sync = True, waitForSettling = False)
17-03-17 21:04:17.918 -07 000000627 INF: Z Motor: Moving to -0.170520 mm, started at -0.170175 mm, distance = -0.34 um
17-03-17 21:04:17.918 -07 000000627 INF: FPGA: Xmit ZDACW 37250\n [Z Motor]
17-03-17 21:04:17.918 -07 000000626 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-17 21:04:17.918 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:04:17.928 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:17.928 -07 000000627 INF: FPGA: 'ZDACW 37250' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:17.928 -07 000000424 INF: FPGA: Recv YRDPOS 134581
17-03-17 21:04:17.938 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:04:17.938 -07 000000626 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:17.938 -07 000000626 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:04:17.938 -07 000000626 INF: Y Motor: Moving 1343 steps-19
17-03-17 21:04:17.938 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:17.938 -07 000000429 INF: FPGA: Recv ZDACR 37250
17-03-17 21:04:17.948 -07 000000627 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:04:17.948 -07 000000627 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 21:04:17.948 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:04:18.098 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1129910432, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:04:18.098 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:04:18.098 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:18.098 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1094488168, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:04:18.098 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:04:18.098 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:18.108 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:18.108 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:18.108 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:04:18.108 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:04:18.328 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 21:04:18.328 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 390 ms overall
17-03-17 21:04:18.358 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:18.368 -07 000000438 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:04:18.368 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:04:18.368 -07 000000626 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:18.368 -07 000000626 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:04:18.368 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.839 mm, average velocity = 2.152 mm/sec
17-03-17 21:04:19.318 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:19.318 -07 000000429 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:04:19.328 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:19.328 -07 000000626 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:19.348 -07 000000626 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:04:19.348 -07 000000626 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:04:19.348 -07 000000626 INF: Y Motor: Moved to 66.5386 after 1433 ms (table move)
17-03-17 21:04:19.348 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170520 mm (DAC = 37250)
17-03-17 21:04:19.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.358 -07 000000431 INF: FPGA: Recv ZSGSRD 35836
17-03-17 21:04:19.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:04:19.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.358 -07 000000576 INF: FPGA: Recv ZSGSRD 35835
17-03-17 21:04:19.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.368 -07 000000618 INF: FPGA: Recv ZSGSRD 35830
17-03-17 21:04:19.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.378 -07 000000012 INF: FPGA: Recv ZSGSRD 35828
17-03-17 21:04:19.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.388 -07 000000429 INF: FPGA: Recv ZSGSRD 35831
17-03-17 21:04:19.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.398 -07 000000576 INF: FPGA: Recv ZSGSRD 35832
17-03-17 21:04:19.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.408 -07 000000382 INF: FPGA: Recv ZSGSRD 35835
17-03-17 21:04:19.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.418 -07 000000438 INF: FPGA: Recv ZSGSRD 35839
17-03-17 21:04:19.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.428 -07 000000476 INF: FPGA: Recv ZSGSRD 35836
17-03-17 21:04:19.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.438 -07 000000433 INF: FPGA: Recv ZSGSRD 35837
17-03-17 21:04:19.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:19.448 -07 000000382 INF: FPGA: Recv ZPIEZORD 31908
17-03-17 21:04:19.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.458 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.684 V. Piezo Error = -8.7 V.
17-03-17 21:04:19.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35834 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35835 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35828 (-169.6 uncal um), Max = 35839 (-169.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:04:19.458 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35834, posNoise = 5, negNoise = 6
17-03-17 21:04:19.458 -07 000000610 INF: Z Motor: After move to -0.170520, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:19.458 -07 000000610 INF: Z Motor: Settle wait time = 1437 ms, measure time = 103 ms (allowed 150 ms), total time = 1540 ms
17-03-17 21:04:19.458 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:04:19.508 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 21:04:19.508 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:04:19.508 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.170528569898997. ----------
17-03-17 21:04:19.508 -07 000000610 INF: Cycle	46	Tile	9	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:04:19.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37073, sync = True, waitForSettling = True)
17-03-17 21:04:19.508 -07 000000610 INF: Z Motor: Moving to -0.169709 mm, started at -0.170529 mm, distance = 0.82 um
17-03-17 21:04:19.508 -07 000000610 INF: FPGA: Xmit ZDACW 37073\n [Z Motor]
17-03-17 21:04:19.508 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:04:19.518 -07 000000610 INF: FPGA: 'ZDACW 37073' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:04:19.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:19.518 -07 000000012 INF: FPGA: Recv ZDACR 37073
17-03-17 21:04:19.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:19.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:04:19.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.678 -07 000000459 INF: FPGA: Recv ZSGSRD 35702
17-03-17 21:04:19.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:19.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.688 -07 000000618 INF: FPGA: Recv ZSGSRD 35705
17-03-17 21:04:19.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.698 -07 000000576 INF: FPGA: Recv ZSGSRD 35704
17-03-17 21:04:19.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.708 -07 000000012 INF: FPGA: Recv ZSGSRD 35708
17-03-17 21:04:19.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.718 -07 000000459 INF: FPGA: Recv ZSGSRD 35716
17-03-17 21:04:19.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.728 -07 000000431 INF: FPGA: Recv ZSGSRD 35707
17-03-17 21:04:19.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.738 -07 000000576 INF: FPGA: Recv ZSGSRD 35708
17-03-17 21:04:19.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.748 -07 000000438 INF: FPGA: Recv ZSGSRD 35707
17-03-17 21:04:19.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.758 -07 000000382 INF: FPGA: Recv ZSGSRD 35703
17-03-17 21:04:19.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:19.768 -07 000000459 INF: FPGA: Recv ZSGSRD 35706
17-03-17 21:04:19.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:19.778 -07 000000431 INF: FPGA: Recv ZPIEZORD 31726
17-03-17 21:04:19.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:19.788 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.657 V. Piezo Error = -8.8 V.
17-03-17 21:04:19.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35707 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35706 (-168.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35702 (-168.8 uncal um), Max = 35716 (-168.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:04:19.788 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35707, posNoise = 9, negNoise = 5
17-03-17 21:04:19.788 -07 000000610 INF: Z Motor: After move to -0.169709, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:19.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:04:19.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:19.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:19.788 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:19.788 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:19.788 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:04:19.788 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:04:19.788 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:04:19.788 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:19.788 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:04:19.788 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:04:19.788 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:04:19.788 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:04:19.788 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:04:19.788 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:04:19.798 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:04:19.798 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:04:19.808 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:04:19.808 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:04:19.808 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 21:04:19.808 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:04:19.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37250 150\n [Camera]
17-03-17 21:04:20.008 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:04:20.438 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:04:20.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:04:20.438 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:20.438 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:20.438 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) start.
17-03-17 21:04:20.438 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:04:20.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:04:20.438 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:20.598 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:20.598 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:04:20.628 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37250 810
17-03-17 21:04:20.778 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:04:20.838 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 21:04:20.838 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:04:20.838 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:20.848 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:20.848 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 21:04:20.968 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:04:20.968 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:04:20.968 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:20.978 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:20.978 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 541 ms.
17-03-17 21:04:20.978 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:04:20.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:04:20.988 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:20.988 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:04:20.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:04:20.988 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:20.998 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:20.998 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:04:20.998 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:20.998 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:04:21.178 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:04:21.178 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:04:21.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37250 150' command took 2 ms to send, 1351 ms to get response, and 1363 ms overall
17-03-17 21:04:21.178 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.170566
17-03-17 21:04:21.178 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17057 mm
17-03-17 21:04:21.178 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:04:21.178 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:04:21.178 -07 000000424 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 21:04:21.178 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:21.178 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37260, sync = True, waitForSettling = False)
17-03-17 21:04:21.178 -07 000000431 INF: Z Motor: Moving to -0.170565 mm, started at -0.169713 mm, distance = -0.85 um
17-03-17 21:04:21.178 -07 000000429 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:04:21.188 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:04:21.188 -07 000000424 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:21.188 -07 000000431 INF: FPGA: Xmit ZDACW 37260\n [Z Motor]
17-03-17 21:04:21.188 -07 000000424 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:04:21.188 -07 000000424 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:04:21.188 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:04:21.198 -07 000000431 INF: FPGA: 'ZDACW 37260' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:04:21.198 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:04:21.208 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:21.208 -07 000000012 INF: FPGA: Recv ZDACR 37260
17-03-17 21:04:21.218 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:04:21.218 -07 000000431 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 21:04:21.368 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:04:21.368 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:04:21.368 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:21.368 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 21:04:21.368 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 21:04:21.368 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:21.378 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:04:21.378 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:04:21.378 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:04:21.378 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:04:21.578 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:04:21.578 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 21:04:21.608 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:21.618 -07 000000433 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:04:21.618 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:04:21.618 -07 000000424 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:21.618 -07 000000424 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 21:04:21.618 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.844 mm, average velocity = 2.170 mm/sec
17-03-17 21:04:21.838 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:04:21.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:04:22.058 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.988112,
17-03-17 21:04:22.568 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:22.568 -07 000000382 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:04:22.578 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:22.578 -07 000000424 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:22.598 -07 000000424 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:04:22.598 -07 000000424 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:04:22.598 -07 000000424 INF: Y Motor: Moved to 67.3716 after 1419 ms (table move)
17-03-17 21:04:22.598 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170565 mm (DAC = 37260)
17-03-17 21:04:22.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:22.608 -07 000000618 INF: FPGA: Recv ZSGSRD 35831
17-03-17 21:04:22.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:04:22.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:22.608 -07 000000459 INF: FPGA: Recv ZSGSRD 35842
17-03-17 21:04:22.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:22.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:22.618 -07 000000438 INF: FPGA: Recv ZSGSRD 35840
17-03-17 21:04:22.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:22.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:22.628 -07 000000576 INF: FPGA: Recv ZSGSRD 35840
17-03-17 21:04:22.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:22.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:22.638 -07 000000541 INF: FPGA: Recv ZSGSRD 35838
17-03-17 21:04:22.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:22.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:22.648 -07 000000618 INF: FPGA: Recv ZSGSRD 35836
17-03-17 21:04:22.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:22.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:22.658 -07 000000433 INF: FPGA: Recv ZSGSRD 35843
17-03-17 21:04:22.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:22.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:22.668 -07 000000438 INF: FPGA: Recv ZSGSRD 35849
17-03-17 21:04:22.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:22.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:22.678 -07 000000431 INF: FPGA: Recv ZSGSRD 35843
17-03-17 21:04:22.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:22.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:22.688 -07 000000476 INF: FPGA: Recv ZSGSRD 35838
17-03-17 21:04:22.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:22.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:22.698 -07 000000433 INF: FPGA: Recv ZPIEZORD 31908
17-03-17 21:04:22.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:22.708 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -8.7 V.
17-03-17 21:04:22.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35840 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35840 (-169.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35831 (-169.6 uncal um), Max = 35849 (-169.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:04:22.708 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35840, posNoise = 9, negNoise = 9
17-03-17 21:04:22.708 -07 000000610 INF: Z Motor: After move to -0.170565, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:22.708 -07 000000610 INF: Z Motor: Settle wait time = 1421 ms, measure time = 103 ms (allowed 150 ms), total time = 1524 ms
17-03-17 21:04:22.708 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:04:22.758 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1576 ms
17-03-17 21:04:22.758 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:04:22.758 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.170567115171848. ----------
17-03-17 21:04:22.758 -07 000000610 INF: Cycle	46	Tile	10	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:04:22.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37083, sync = True, waitForSettling = True)
17-03-17 21:04:22.758 -07 000000610 INF: Z Motor: Moving to -0.169755 mm, started at -0.170567 mm, distance = 0.81 um
17-03-17 21:04:22.758 -07 000000610 INF: FPGA: Xmit ZDACW 37083\n [Z Motor]
17-03-17 21:04:22.758 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:04:22.768 -07 000000610 INF: FPGA: 'ZDACW 37083' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:04:22.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:22.768 -07 000000431 INF: FPGA: Recv ZDACR 37083
17-03-17 21:04:22.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:22.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:04:22.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:22.928 -07 000000476 INF: FPGA: Recv ZSGSRD 35718
17-03-17 21:04:22.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:22.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:22.938 -07 000000541 INF: FPGA: Recv ZSGSRD 35712
17-03-17 21:04:22.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:22.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:22.948 -07 000000576 INF: FPGA: Recv ZSGSRD 35711
17-03-17 21:04:22.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:22.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:22.958 -07 000000433 INF: FPGA: Recv ZSGSRD 35706
17-03-17 21:04:22.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:22.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:22.968 -07 000000459 INF: FPGA: Recv ZSGSRD 35712
17-03-17 21:04:22.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:22.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:22.978 -07 000000541 INF: FPGA: Recv ZSGSRD 35721
17-03-17 21:04:22.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:22.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:22.988 -07 000000576 INF: FPGA: Recv ZSGSRD 35716
17-03-17 21:04:22.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:22.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:22.998 -07 000000431 INF: FPGA: Recv ZSGSRD 35716
17-03-17 21:04:23.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:23.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:23.008 -07 000000459 INF: FPGA: Recv ZSGSRD 35715
17-03-17 21:04:23.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:23.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:23.018 -07 000000626 INF: FPGA: Recv ZSGSRD 35711
17-03-17 21:04:23.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:23.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:23.028 -07 000000382 INF: FPGA: Recv ZPIEZORD 31749
17-03-17 21:04:23.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:23.038 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.659 V. Piezo Error = -8.8 V.
17-03-17 21:04:23.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35714 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35714 (-168.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35706 (-168.8 uncal um), Max = 35721 (-168.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:04:23.038 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35714, posNoise = 7, negNoise = 8
17-03-17 21:04:23.038 -07 000000610 INF: Z Motor: After move to -0.169755, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:23.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 21:04:23.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:23.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:23.038 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:23.038 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:04:23.038 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:23.038 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:23.038 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:04:23.038 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:04:23.038 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:04:23.038 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:04:23.038 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:04:23.038 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:04:23.048 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:04:23.048 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:04:23.048 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:04:23.048 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:04:23.058 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:04:23.058 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:04:23.058 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:04:23.058 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:04:23.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37260 150\n [Camera]
17-03-17 21:04:23.268 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:04:23.688 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:04:23.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:04:23.688 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:23.688 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:04:23.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:04:23.808 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:23.808 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:23.808 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2352681176, 0x0, 391868352) start.
17-03-17 21:04:23.808 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:23.808 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:04:23.888 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37260 812
17-03-17 21:04:24.028 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:04:24.178 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2352681176, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 21:04:24.178 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 21:04:24.178 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:24.178 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:04:24.178 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:04:24.178 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:24.178 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:24.178 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 492 ms.
17-03-17 21:04:24.188 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:24.188 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:04:24.238 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:04:24.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:04:24.238 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:24.238 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:04:24.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:04:24.238 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:24.238 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:24.238 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:04:24.248 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:24.248 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:04:24.428 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-17 21:04:24.428 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:04:24.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37260 150' command took 2 ms to send, 1354 ms to get response, and 1364 ms overall
17-03-17 21:04:24.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:04:24.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169757664441986. ------
17-03-17 21:04:24.428 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:04:24.428 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17615 mm
17-03-17 21:04:24.428 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:04:24.438 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:04:24.438 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 5 ms to get response, and 5 ms overall
17-03-17 21:04:24.438 -07 000000626 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:04:24.448 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38479, sync = True, waitForSettling = False)
17-03-17 21:04:24.448 -07 000000012 INF: Z Motor: Moving to -0.176146 mm, started at -0.169758 mm, distance = -6.39 um
17-03-17 21:04:24.448 -07 000000012 INF: FPGA: Xmit ZDACW 38479\n [Z Motor]
17-03-17 21:04:24.448 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:04:24.448 -07 000000433 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 21:04:24.448 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:04:24.458 -07 000000012 INF: FPGA: 'ZDACW 38479' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:04:24.458 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:24.458 -07 000000627 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:04:24.468 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:04:24.468 -07 000000433 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:24.468 -07 000000433 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:04:24.468 -07 000000433 INF: Y Motor: Moving 1346 steps-23
17-03-17 21:04:24.468 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:24.468 -07 000000627 INF: FPGA: Recv ZDACR 38479
17-03-17 21:04:24.478 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:04:24.478 -07 000000012 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 21:04:24.478 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:04:24.618 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:04:24.618 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:04:24.618 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:24.618 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:04:24.618 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:04:24.618 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:24.618 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:24.628 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:24.628 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:04:24.628 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:04:24.638 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:04:24.638 -07 000000626 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 203 ms overall
17-03-17 21:04:24.848 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:04:24.848 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 21:04:24.888 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:24.888 -07 000000459 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:04:24.898 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:04:24.898 -07 000000433 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:24.898 -07 000000433 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 21:04:24.898 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.841 mm, average velocity = 2.168 mm/sec
17-03-17 21:04:25.848 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:25.848 -07 000000429 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:04:25.858 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:25.858 -07 000000433 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:25.878 -07 000000433 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:04:25.878 -07 000000433 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:04:25.878 -07 000000433 INF: Y Motor: Moved to 68.2046 after 1427 ms (table move)
17-03-17 21:04:25.878 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176146 mm (DAC = 38479)
17-03-17 21:04:25.878 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:25.878 -07 000000429 INF: FPGA: Recv ZSGSRD 36711
17-03-17 21:04:25.888 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:04:25.888 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:25.888 -07 000000627 INF: FPGA: Recv ZSGSRD 36712
17-03-17 21:04:25.898 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:25.898 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:25.898 -07 000000459 INF: FPGA: Recv ZSGSRD 36711
17-03-17 21:04:25.908 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:25.908 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:25.908 -07 000000541 INF: FPGA: Recv ZSGSRD 36708
17-03-17 21:04:25.918 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:25.918 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:25.918 -07 000000438 INF: FPGA: Recv ZSGSRD 36706
17-03-17 21:04:25.928 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:25.928 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:25.928 -07 000000431 INF: FPGA: Recv ZSGSRD 36713
17-03-17 21:04:25.938 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:25.938 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:25.938 -07 000000438 INF: FPGA: Recv ZSGSRD 36707
17-03-17 21:04:25.948 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:04:25.948 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:25.948 -07 000000382 INF: FPGA: Recv ZSGSRD 36711
17-03-17 21:04:25.958 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:25.958 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:25.958 -07 000000459 INF: FPGA: Recv ZSGSRD 36712
17-03-17 21:04:25.968 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:25.968 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:25.968 -07 000000476 INF: FPGA: Recv ZSGSRD 36706
17-03-17 21:04:25.978 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:25.978 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:25.978 -07 000000541 INF: FPGA: Recv ZPIEZORD 33062
17-03-17 21:04:25.988 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:25.988 -07 000000424 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.872 V. Piezo Error = -8.1 V.
17-03-17 21:04:25.988 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36710 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36711 (-175.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36706 (-175.2 uncal um), Max = 36713 (-175.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:04:25.988 -07 000000424 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36710, posNoise = 3, negNoise = 4
17-03-17 21:04:25.988 -07 000000424 INF: Z Motor: After move to -0.176146, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:25.988 -07 000000424 INF: Z Motor: Settle wait time = 1431 ms, measure time = 105 ms (allowed 150 ms), total time = 1536 ms
17-03-17 21:04:25.988 -07 000000424 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:04:26.038 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 21:04:26.038 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:04:26.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:26.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:26.038 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:26.038 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:26.038 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:04:26.038 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:26.038 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:04:26.038 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:04:26.038 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:04:26.038 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:04:26.058 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:04:26.058 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:04:26.058 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:04:26.098 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:04:26.298 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:04:26.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:04:26.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:04:26.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:04:26.338 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:04:26.338 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 21:04:26.338 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 21:04:26.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:04:26.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:26.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:04:26.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:04:26.538 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:04:26.538 -07 000000438 INF: Autofocus start
17-03-17 21:04:26.538 -07 000000438 INF: MeasureProfile start
17-03-17 21:04:26.538 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:04:26.548 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:04:26.548 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:04:26.548 -07 000000438 INF: MeasureProfile done
17-03-17 21:04:26.548 -07 000000438 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:04:26.548 -07 000000438 INF: Autofocus finished
17-03-17 21:04:26.748 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:04:26.748 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 21:04:26.748 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.17615617973518. ----------
17-03-17 21:04:26.748 -07 000000610 INF: Cycle	46	Tile	11	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:04:26.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36976, sync = True, waitForSettling = True)
17-03-17 21:04:26.758 -07 000000610 INF: Z Motor: Moving to -0.169265 mm, started at -0.176156 mm, distance = 6.89 um
17-03-17 21:04:26.758 -07 000000610 INF: FPGA: Xmit ZDACW 36976\n [Z Motor]
17-03-17 21:04:26.758 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:04:26.768 -07 000000610 INF: FPGA: 'ZDACW 36976' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:04:26.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:26.768 -07 000000627 INF: FPGA: Recv ZDACR 36976
17-03-17 21:04:26.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:26.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:04:26.838 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:04:26.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:04:26.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:26.928 -07 000000438 INF: FPGA: Recv ZSGSRD 35635
17-03-17 21:04:26.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:26.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:26.938 -07 000000476 INF: FPGA: Recv ZSGSRD 35639
17-03-17 21:04:26.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:26.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:26.948 -07 000000424 INF: FPGA: Recv ZSGSRD 35636
17-03-17 21:04:26.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:26.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:26.958 -07 000000627 INF: FPGA: Recv ZSGSRD 35633
17-03-17 21:04:26.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:26.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:26.968 -07 000000438 INF: FPGA: Recv ZSGSRD 35633
17-03-17 21:04:26.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:26.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:26.978 -07 000000431 INF: FPGA: Recv ZSGSRD 35644
17-03-17 21:04:26.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:26.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:26.988 -07 000000501 INF: FPGA: Recv ZSGSRD 35640
17-03-17 21:04:26.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:26.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:26.998 -07 000000541 INF: FPGA: Recv ZSGSRD 35640
17-03-17 21:04:27.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:27.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:27.008 -07 000000618 INF: FPGA: Recv ZSGSRD 35633
17-03-17 21:04:27.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:27.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:27.018 -07 000000431 INF: FPGA: Recv ZSGSRD 35637
17-03-17 21:04:27.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:27.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:27.028 -07 000000501 INF: FPGA: Recv ZPIEZORD 31628
17-03-17 21:04:27.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:27.038 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.642 V. Piezo Error = -8.9 V.
17-03-17 21:04:27.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35637 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35636 (-168.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35633 (-168.4 uncal um), Max = 35644 (-168.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:04:27.038 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35637, posNoise = 7, negNoise = 4
17-03-17 21:04:27.038 -07 000000610 INF: Z Motor: After move to -0.169265, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:27.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:04:27.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:27.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:27.038 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:27.038 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:27.038 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:04:27.038 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:04:27.038 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:04:27.038 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:27.038 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:04:27.038 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:04:27.038 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 21:04:27.038 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:04:27.048 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:04:27.048 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:04:27.048 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:04:27.048 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:04:27.058 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:04:27.058 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:04:27.058 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:04:27.058 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:04:27.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37153 150\n [Camera]
17-03-17 21:04:27.258 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:04:27.418 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.011254,
17-03-17 21:04:27.688 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 619
17-03-17 21:04:27.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 619
17-03-17 21:04:27.688 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:27.688 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:27.688 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:04:27.688 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 619
17-03-17 21:04:27.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 619
17-03-17 21:04:27.688 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:27.688 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:27.688 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 21:04:27.878 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37153 810
17-03-17 21:04:28.028 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:04:28.068 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:04:28.068 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:04:28.068 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:28.068 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:04:28.068 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:04:28.068 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:28.068 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:04:28.068 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:04:28.068 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:04:28.078 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:04:28.228 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:04:28.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:04:28.228 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:28.228 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:28.228 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 21:04:28.228 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:04:28.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:04:28.228 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:28.228 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:28.238 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1059065904, 0x0, 418435064) start.
17-03-17 21:04:28.418 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:04:28.418 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:04:28.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37153 150' command took 2 ms to send, 1358 ms to get response, and 1364 ms overall
17-03-17 21:04:28.418 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.169847
17-03-17 21:04:28.428 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16985 mm
17-03-17 21:04:28.428 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:04:28.428 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:04:28.428 -07 000000382 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 21:04:28.428 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:28.428 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 37103, sync = True, waitForSettling = False)
17-03-17 21:04:28.428 -07 000000429 INF: Z Motor: Moving to -0.169847 mm, started at -0.169263 mm, distance = -0.58 um
17-03-17 21:04:28.428 -07 000000476 INF: FPGA: Recv YRDPOS 139684
17-03-17 21:04:28.438 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:04:28.438 -07 000000382 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:28.438 -07 000000429 INF: FPGA: Xmit ZDACW 37103\n [Z Motor]
17-03-17 21:04:28.438 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:04:28.438 -07 000000382 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:04:28.438 -07 000000382 INF: Y Motor: Moving 1340 steps-16
17-03-17 21:04:28.448 -07 000000429 INF: FPGA: 'ZDACW 37103' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:04:28.448 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:28.448 -07 000000541 INF: FPGA: Recv ZDACR 37103
17-03-17 21:04:28.458 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:28.458 -07 000000429 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 21:04:28.458 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:04:28.628 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:04:28.628 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:04:28.628 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:28.628 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1059065904, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 21:04:28.628 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:04:28.628 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:28.628 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:28.628 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:04:28.628 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:04:28.638 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:04:28.828 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:04:28.828 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 21:04:28.868 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:28.868 -07 000000438 INF: FPGA: Recv YRDPOS 141366
17-03-17 21:04:28.878 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:04:28.878 -07 000000382 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:28.878 -07 000000382 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 21:04:28.878 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.132 mm/sec
17-03-17 21:04:29.828 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:29.828 -07 000000431 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:04:29.838 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:29.838 -07 000000382 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:29.858 -07 000000382 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:04:29.858 -07 000000382 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:04:29.858 -07 000000382 INF: Y Motor: Moved to 69.0269 after 1429 ms (table move)
17-03-17 21:04:29.858 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169847 mm (DAC = 37103)
17-03-17 21:04:29.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:29.858 -07 000000429 INF: FPGA: Recv ZSGSRD 35722
17-03-17 21:04:29.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:04:29.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:29.868 -07 000000576 INF: FPGA: Recv ZSGSRD 35733
17-03-17 21:04:29.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:29.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:29.878 -07 000000012 INF: FPGA: Recv ZSGSRD 35734
17-03-17 21:04:29.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:29.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:29.888 -07 000000382 INF: FPGA: Recv ZSGSRD 35727
17-03-17 21:04:29.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:29.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:29.898 -07 000000431 INF: FPGA: Recv ZSGSRD 35728
17-03-17 21:04:29.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:29.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:29.908 -07 000000576 INF: FPGA: Recv ZSGSRD 35728
17-03-17 21:04:29.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:29.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:29.918 -07 000000618 INF: FPGA: Recv ZSGSRD 35722
17-03-17 21:04:29.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:29.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:29.928 -07 000000626 INF: FPGA: Recv ZSGSRD 35727
17-03-17 21:04:29.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:29.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:29.938 -07 000000627 INF: FPGA: Recv ZSGSRD 35728
17-03-17 21:04:29.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:29.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:29.948 -07 000000501 INF: FPGA: Recv ZSGSRD 35723
17-03-17 21:04:29.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:29.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:29.958 -07 000000429 INF: FPGA: Recv ZPIEZORD 31764
17-03-17 21:04:29.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:29.968 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.662 V. Piezo Error = -8.8 V.
17-03-17 21:04:29.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35727 (-169.0 uncal um), Error = 0.9 uncal um, Median = 35728 (-169.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35722 (-168.9 uncal um), Max = 35734 (-169.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:04:29.968 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35727, posNoise = 7, negNoise = 5
17-03-17 21:04:29.968 -07 000000610 INF: Z Motor: After move to -0.169847, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:29.968 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 105 ms (allowed 150 ms), total time = 1537 ms
17-03-17 21:04:29.968 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:04:30.018 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 21:04:30.018 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:04:30.018 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.169841179199829. ----------
17-03-17 21:04:30.018 -07 000000610 INF: Cycle	46	Tile	12	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:04:30.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36926, sync = True, waitForSettling = True)
17-03-17 21:04:30.018 -07 000000610 INF: Z Motor: Moving to -0.169036 mm, started at -0.169841 mm, distance = 0.80 um
17-03-17 21:04:30.018 -07 000000610 INF: FPGA: Xmit ZDACW 36926\n [Z Motor]
17-03-17 21:04:30.018 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:04:30.028 -07 000000610 INF: FPGA: 'ZDACW 36926' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:04:30.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:30.028 -07 000000476 INF: FPGA: Recv ZDACR 36926
17-03-17 21:04:30.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:30.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:04:30.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:30.188 -07 000000382 INF: FPGA: Recv ZSGSRD 35608
17-03-17 21:04:30.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:30.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:30.198 -07 000000618 INF: FPGA: Recv ZSGSRD 35601
17-03-17 21:04:30.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:30.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:30.208 -07 000000501 INF: FPGA: Recv ZSGSRD 35600
17-03-17 21:04:30.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:30.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:30.218 -07 000000476 INF: FPGA: Recv ZSGSRD 35606
17-03-17 21:04:30.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:30.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:30.228 -07 000000382 INF: FPGA: Recv ZSGSRD 35601
17-03-17 21:04:30.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:30.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:30.238 -07 000000431 INF: FPGA: Recv ZSGSRD 35598
17-03-17 21:04:30.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:30.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:30.248 -07 000000541 INF: FPGA: Recv ZSGSRD 35605
17-03-17 21:04:30.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:30.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:30.258 -07 000000476 INF: FPGA: Recv ZSGSRD 35605
17-03-17 21:04:30.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:30.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:30.268 -07 000000382 INF: FPGA: Recv ZSGSRD 35602
17-03-17 21:04:30.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:30.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:30.278 -07 000000618 INF: FPGA: Recv ZSGSRD 35605
17-03-17 21:04:30.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:30.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:30.288 -07 000000541 INF: FPGA: Recv ZPIEZORD 31573
17-03-17 21:04:30.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:30.298 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.635 V. Piezo Error = -8.9 V.
17-03-17 21:04:30.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35603 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35604 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35598 (-168.1 uncal um), Max = 35608 (-168.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:04:30.298 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35603, posNoise = 5, negNoise = 5
17-03-17 21:04:30.298 -07 000000610 INF: Z Motor: After move to -0.169036, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:30.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:04:30.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:30.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:30.298 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:30.298 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:30.298 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:04:30.298 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:30.298 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:04:30.298 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:04:30.298 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:04:30.298 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:04:30.298 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:04:30.298 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:04:30.298 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:04:30.298 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:04:30.308 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:04:30.308 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:04:30.318 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:04:30.318 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:04:30.318 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:04:30.318 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:04:30.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37103 150\n [Camera]
17-03-17 21:04:30.518 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:04:30.948 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:04:30.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:04:30.948 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:30.948 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:30.948 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1094488168, 0x0, 391868352) start.
17-03-17 21:04:30.948 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:04:30.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:04:30.948 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:30.948 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:30.948 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1129910432, 0x0, 418435064) start.
17-03-17 21:04:31.138 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37103 810
17-03-17 21:04:31.288 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:04:31.328 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1129910432, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:04:31.328 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:04:31.328 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:31.328 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1094488168, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:04:31.328 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:04:31.328 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:31.328 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:31.328 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:31.328 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:04:31.338 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:04:31.498 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:04:31.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:04:31.498 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:31.618 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:04:31.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:04:31.628 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:31.628 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:31.628 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:04:31.638 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:31.638 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:04:31.688 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:04:31.688 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:04:31.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37103 150' command took 2 ms to send, 1352 ms to get response, and 1363 ms overall
17-03-17 21:04:31.688 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.169432
17-03-17 21:04:31.688 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16943 mm
17-03-17 21:04:31.688 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:04:31.688 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:04:31.688 -07 000000576 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 21:04:31.688 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:31.688 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37012, sync = True, waitForSettling = False)
17-03-17 21:04:31.688 -07 000000431 INF: Z Motor: Moving to -0.169430 mm, started at -0.169045 mm, distance = -0.39 um
17-03-17 21:04:31.698 -07 000000541 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:04:31.698 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:04:31.698 -07 000000576 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:31.698 -07 000000576 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:04:31.698 -07 000000576 INF: Y Motor: Moving 1353 steps-33
17-03-17 21:04:31.698 -07 000000431 INF: FPGA: Xmit ZDACW 37012\n [Z Motor]
17-03-17 21:04:31.698 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 21:04:31.708 -07 000000431 INF: FPGA: 'ZDACW 37012' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:04:31.708 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:04:31.718 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:31.718 -07 000000433 INF: FPGA: Recv ZDACR 37012
17-03-17 21:04:31.728 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:04:31.728 -07 000000431 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 21:04:31.838 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:04:31.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:04:32.008 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:04:32.008 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:04:32.008 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:32.008 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:32.008 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:04:32.008 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:04:32.008 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:32.018 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:32.018 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 21:04:32.018 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:04:32.088 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 21:04:32.088 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 21:04:32.118 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:32.128 -07 000000012 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:04:32.128 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:04:32.128 -07 000000576 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:32.128 -07 000000576 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:04:32.128 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.846 mm, average velocity = 2.174 mm/sec
17-03-17 21:04:32.778 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.023489,
17-03-17 21:04:33.078 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:33.078 -07 000000541 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:04:33.088 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:33.088 -07 000000576 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:33.108 -07 000000576 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:04:33.108 -07 000000576 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:04:33.108 -07 000000576 INF: Y Motor: Moved to 69.8628 after 1416 ms (table move)
17-03-17 21:04:33.108 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169430 mm (DAC = 37012)
17-03-17 21:04:33.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.108 -07 000000541 INF: FPGA: Recv ZSGSRD 35654
17-03-17 21:04:33.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:04:33.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.118 -07 000000431 INF: FPGA: Recv ZSGSRD 35671
17-03-17 21:04:33.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:33.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.128 -07 000000433 INF: FPGA: Recv ZSGSRD 35666
17-03-17 21:04:33.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:33.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.138 -07 000000618 INF: FPGA: Recv ZSGSRD 35666
17-03-17 21:04:33.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:33.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.168 -07 000000541 INF: FPGA: Recv ZSGSRD 35662
17-03-17 21:04:33.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:04:33.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.178 -07 000000431 INF: FPGA: Recv ZSGSRD 35665
17-03-17 21:04:33.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:33.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.198 -07 000000618 INF: FPGA: Recv ZSGSRD 35671
17-03-17 21:04:33.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:04:33.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.208 -07 000000476 INF: FPGA: Recv ZSGSRD 35673
17-03-17 21:04:33.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:33.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.238 -07 000000424 INF: FPGA: Recv ZSGSRD 35662
17-03-17 21:04:33.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:04:33.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.248 -07 000000012 INF: FPGA: Recv ZSGSRD 35660
17-03-17 21:04:33.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:33.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:33.258 -07 000000627 INF: FPGA: Recv ZPIEZORD 31719
17-03-17 21:04:33.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:33.268 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.648 V. Piezo Error = -8.7 V.
17-03-17 21:04:33.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35665 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35666 (-168.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35654 (-168.5 uncal um), Max = 35673 (-168.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 21:04:33.268 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35665, posNoise = 8, negNoise = 11
17-03-17 21:04:33.268 -07 000000610 INF: Z Motor: After move to -0.169430, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:33.268 -07 000000610 INF: Z Motor: Settle wait time = 1418 ms, measure time = 155 ms (allowed 150 ms), total time = 1573 ms
17-03-17 21:04:33.268 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 155 ms, longer than max expected time of 150 ms
17-03-17 21:04:33.268 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1576 ms
17-03-17 21:04:33.268 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:04:33.268 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.169442878047039. ----------
17-03-17 21:04:33.268 -07 000000610 INF: Cycle	46	Tile	13	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:04:33.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36836, sync = True, waitForSettling = True)
17-03-17 21:04:33.268 -07 000000610 INF: Z Motor: Moving to -0.168624 mm, started at -0.169443 mm, distance = 0.82 um
17-03-17 21:04:33.268 -07 000000610 INF: FPGA: Xmit ZDACW 36836\n [Z Motor]
17-03-17 21:04:33.268 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:04:33.278 -07 000000610 INF: FPGA: 'ZDACW 36836' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:04:33.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:33.278 -07 000000576 INF: FPGA: Recv ZDACR 36836
17-03-17 21:04:33.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:33.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:04:33.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.438 -07 000000382 INF: FPGA: Recv ZSGSRD 35547
17-03-17 21:04:33.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:33.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.448 -07 000000429 INF: FPGA: Recv ZSGSRD 35536
17-03-17 21:04:33.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:33.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.458 -07 000000459 INF: FPGA: Recv ZSGSRD 35538
17-03-17 21:04:33.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:33.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.468 -07 000000541 INF: FPGA: Recv ZSGSRD 35539
17-03-17 21:04:33.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:33.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.478 -07 000000627 INF: FPGA: Recv ZSGSRD 35537
17-03-17 21:04:33.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:33.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.488 -07 000000431 INF: FPGA: Recv ZSGSRD 35540
17-03-17 21:04:33.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:33.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.498 -07 000000438 INF: FPGA: Recv ZSGSRD 35536
17-03-17 21:04:33.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:33.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.508 -07 000000576 INF: FPGA: Recv ZSGSRD 35536
17-03-17 21:04:33.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:33.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.518 -07 000000627 INF: FPGA: Recv ZSGSRD 35543
17-03-17 21:04:33.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:33.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:33.528 -07 000000431 INF: FPGA: Recv ZSGSRD 35546
17-03-17 21:04:33.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:33.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:33.538 -07 000000476 INF: FPGA: Recv ZPIEZORD 31508
17-03-17 21:04:33.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:33.548 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -8.9 V.
17-03-17 21:04:33.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35540 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35538 (-167.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35536 (-167.7 uncal um), Max = 35547 (-167.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:04:33.548 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35540, posNoise = 7, negNoise = 4
17-03-17 21:04:33.548 -07 000000610 INF: Z Motor: After move to -0.168624, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:33.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 21:04:33.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:33.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:33.548 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:33.548 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:33.548 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:04:33.548 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:33.548 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:04:33.548 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:04:33.548 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:04:33.548 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:04:33.548 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:04:33.548 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:04:33.558 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:04:33.558 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:04:33.558 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:04:33.558 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:04:33.568 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:04:33.568 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:04:33.568 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:04:33.568 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:04:33.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 37012 150\n [Camera]
17-03-17 21:04:33.768 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:04:34.198 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:04:34.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:04:34.198 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:34.198 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:34.198 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 21:04:34.198 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:04:34.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:04:34.198 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:34.198 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:34.198 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 21:04:34.388 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37012 810
17-03-17 21:04:34.538 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:04:34.588 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 21:04:34.588 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:04:34.588 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:34.598 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:34.598 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:04:34.598 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:04:34.598 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:34.598 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:34.598 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:04:34.598 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:04:34.748 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:04:34.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:04:34.748 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:34.858 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:04:34.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:04:34.858 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:34.858 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:34.858 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:04:34.858 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:34.858 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:04:34.938 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:04:34.938 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:04:34.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 37012 150' command took 2 ms to send, 1352 ms to get response, and 1364 ms overall
17-03-17 21:04:34.938 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.168946
17-03-17 21:04:34.938 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16895 mm
17-03-17 21:04:34.938 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:04:34.948 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:04:34.948 -07 000000576 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 21:04:34.948 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 36906, sync = True, waitForSettling = False)
17-03-17 21:04:34.948 -07 000000438 INF: Z Motor: Moving to -0.168945 mm, started at -0.168640 mm, distance = -0.30 um
17-03-17 21:04:34.948 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:34.948 -07 000000429 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:04:34.958 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:04:34.958 -07 000000576 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:34.958 -07 000000576 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:04:34.958 -07 000000576 INF: Y Motor: Moving 1344 steps-20
17-03-17 21:04:34.958 -07 000000438 INF: FPGA: Xmit ZDACW 36906\n [Z Motor]
17-03-17 21:04:34.958 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:04:34.968 -07 000000438 INF: FPGA: 'ZDACW 36906' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:04:34.968 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:04:34.978 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:34.978 -07 000000618 INF: FPGA: Recv ZDACR 36906
17-03-17 21:04:34.988 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:04:34.988 -07 000000438 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 21:04:35.238 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:04:35.238 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:04:35.238 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:35.238 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:04:35.238 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:04:35.238 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:35.238 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:35.238 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:35.238 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 497 ms.
17-03-17 21:04:35.248 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:04:35.338 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:04:35.338 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:04:35.378 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:35.388 -07 000000626 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:04:35.388 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 21:04:35.388 -07 000000576 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:35.388 -07 000000576 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:04:35.388 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.164 mm/sec
17-03-17 21:04:36.338 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:36.338 -07 000000627 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:04:36.348 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.348 -07 000000576 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:36.368 -07 000000576 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:04:36.368 -07 000000576 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:04:36.368 -07 000000576 INF: Y Motor: Moved to 70.6885 after 1423 ms (table move)
17-03-17 21:04:36.368 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168945 mm (DAC = 36906)
17-03-17 21:04:36.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.378 -07 000000618 INF: FPGA: Recv ZSGSRD 35582
17-03-17 21:04:36.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:04:36.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.378 -07 000000424 INF: FPGA: Recv ZSGSRD 35587
17-03-17 21:04:36.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.388 -07 000000382 INF: FPGA: Recv ZSGSRD 35592
17-03-17 21:04:36.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.398 -07 000000576 INF: FPGA: Recv ZSGSRD 35593
17-03-17 21:04:36.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.408 -07 000000618 INF: FPGA: Recv ZSGSRD 35589
17-03-17 21:04:36.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.418 -07 000000576 INF: FPGA: Recv ZSGSRD 35586
17-03-17 21:04:36.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:04:36.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.428 -07 000000626 INF: FPGA: Recv ZSGSRD 35593
17-03-17 21:04:36.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.438 -07 000000424 INF: FPGA: Recv ZSGSRD 35582
17-03-17 21:04:36.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.448 -07 000000618 INF: FPGA: Recv ZSGSRD 35587
17-03-17 21:04:36.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.458 -07 000000576 INF: FPGA: Recv ZSGSRD 35592
17-03-17 21:04:36.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:36.468 -07 000000541 INF: FPGA: Recv ZPIEZORD 31589
17-03-17 21:04:36.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.478 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.631 V. Piezo Error = -8.8 V.
17-03-17 21:04:36.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35588 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35588 (-168.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35582 (-168.0 uncal um), Max = 35593 (-168.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:04:36.478 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35588, posNoise = 5, negNoise = 6
17-03-17 21:04:36.478 -07 000000610 INF: Z Motor: After move to -0.168945, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:36.478 -07 000000610 INF: Z Motor: Settle wait time = 1425 ms, measure time = 103 ms (allowed 150 ms), total time = 1528 ms
17-03-17 21:04:36.478 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:04:36.528 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 21:04:36.528 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:04:36.528 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.168948213712124. ----------
17-03-17 21:04:36.528 -07 000000610 INF: Cycle	46	Tile	14	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:04:36.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36729, sync = True, waitForSettling = True)
17-03-17 21:04:36.528 -07 000000610 INF: Z Motor: Moving to -0.168135 mm, started at -0.168948 mm, distance = 0.81 um
17-03-17 21:04:36.528 -07 000000610 INF: FPGA: Xmit ZDACW 36729\n [Z Motor]
17-03-17 21:04:36.528 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:04:36.538 -07 000000610 INF: FPGA: 'ZDACW 36729' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:04:36.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:36.538 -07 000000476 INF: FPGA: Recv ZDACR 36729
17-03-17 21:04:36.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:04:36.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.698 -07 000000541 INF: FPGA: Recv ZSGSRD 35465
17-03-17 21:04:36.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:36.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.708 -07 000000429 INF: FPGA: Recv ZSGSRD 35469
17-03-17 21:04:36.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.718 -07 000000501 INF: FPGA: Recv ZSGSRD 35462
17-03-17 21:04:36.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.728 -07 000000431 INF: FPGA: Recv ZSGSRD 35462
17-03-17 21:04:36.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.738 -07 000000476 INF: FPGA: Recv ZSGSRD 35463
17-03-17 21:04:36.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.748 -07 000000012 INF: FPGA: Recv ZSGSRD 35456
17-03-17 21:04:36.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.758 -07 000000576 INF: FPGA: Recv ZSGSRD 35465
17-03-17 21:04:36.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.768 -07 000000424 INF: FPGA: Recv ZSGSRD 35462
17-03-17 21:04:36.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.778 -07 000000438 INF: FPGA: Recv ZSGSRD 35464
17-03-17 21:04:36.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:36.788 -07 000000541 INF: FPGA: Recv ZSGSRD 35470
17-03-17 21:04:36.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:36.798 -07 000000429 INF: FPGA: Recv ZPIEZORD 31401
17-03-17 21:04:36.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:36.808 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.604 V. Piezo Error = -9.0 V.
17-03-17 21:04:36.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35464 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35464 (-167.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35456 (-167.2 uncal um), Max = 35470 (-167.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:04:36.808 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35464, posNoise = 6, negNoise = 8
17-03-17 21:04:36.808 -07 000000610 INF: Z Motor: After move to -0.168135, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:36.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:04:36.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:36.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:36.808 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:36.808 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:36.808 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:04:36.808 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:04:36.808 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:04:36.808 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:36.808 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:04:36.808 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:04:36.808 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:04:36.808 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:04:36.818 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:04:36.818 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:04:36.818 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:04:36.818 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:04:36.828 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:04:36.828 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:04:36.828 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:04:36.828 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:04:36.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 36906 150\n [Camera]
17-03-17 21:04:36.838 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:04:36.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:04:37.038 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:04:37.458 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:04:37.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:04:37.458 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:37.458 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:37.458 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 21:04:37.458 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:04:37.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:04:37.458 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:37.458 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:37.458 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 21:04:37.648 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36906 812
17-03-17 21:04:37.798 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:04:37.838 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:04:37.838 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:04:37.838 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:37.838 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:04:37.838 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:04:37.838 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:37.848 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:04:37.848 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:04:37.848 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:04:37.848 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:04:38.008 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:04:38.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:04:38.008 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:38.008 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:38.008 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1059065904, 0x0, 391868352) start.
17-03-17 21:04:38.008 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:04:38.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:04:38.008 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:38.008 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:38.008 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1094488168, 0x0, 418435064) start.
17-03-17 21:04:38.138 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.020806,
17-03-17 21:04:38.198 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-17 21:04:38.198 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:04:38.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 36906 150' command took 2 ms to send, 1354 ms to get response, and 1363 ms overall
17-03-17 21:04:38.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:04:38.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.168151611406546. ------
17-03-17 21:04:38.208 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:04:38.208 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17454 mm
17-03-17 21:04:38.208 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:04:38.208 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:04:38.208 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:04:38.208 -07 000000626 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 21:04:38.208 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38129, sync = True, waitForSettling = False)
17-03-17 21:04:38.208 -07 000000012 INF: Z Motor: Moving to -0.174543 mm, started at -0.168152 mm, distance = -6.39 um
17-03-17 21:04:38.218 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:38.218 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:38.218 -07 000000431 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:04:38.228 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:04:38.228 -07 000000626 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:38.228 -07 000000626 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:04:38.228 -07 000000626 INF: Y Motor: Moving 1351 steps-30
17-03-17 21:04:38.228 -07 000000012 INF: FPGA: Xmit ZDACW 38129\n [Z Motor]
17-03-17 21:04:38.228 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:04:38.238 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:04:38.238 -07 000000012 INF: FPGA: 'ZDACW 38129' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:04:38.248 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:04:38.268 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:38.268 -07 000000476 INF: FPGA: Recv ZDACR 38129
17-03-17 21:04:38.278 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 21:04:38.278 -07 000000012 INF: Z Motor: MoveAbsStepped took 65 ms (did NOT wait for settling yet))
17-03-17 21:04:38.388 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1059065904, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:04:38.388 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:04:38.388 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:38.388 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1094488168, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:04:38.388 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:04:38.388 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:38.388 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:38.388 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:04:38.398 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:38.398 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:04:38.438 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:04:38.438 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:04:38.618 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 21:04:38.618 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:04:38.658 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:38.658 -07 000000618 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:04:38.668 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:04:38.668 -07 000000626 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:38.668 -07 000000626 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:04:38.668 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 21:04:39.618 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:39.618 -07 000000541 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:04:39.628 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:39.628 -07 000000626 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:39.648 -07 000000626 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:04:39.648 -07 000000626 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:04:39.648 -07 000000626 INF: Y Motor: Moved to 71.5186 after 1439 ms (table move)
17-03-17 21:04:39.648 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174543 mm (DAC = 38129)
17-03-17 21:04:39.648 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:39.658 -07 000000476 INF: FPGA: Recv ZSGSRD 36458
17-03-17 21:04:39.658 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:04:39.658 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:39.658 -07 000000382 INF: FPGA: Recv ZSGSRD 36459
17-03-17 21:04:39.668 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:39.668 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:39.668 -07 000000433 INF: FPGA: Recv ZSGSRD 36453
17-03-17 21:04:39.678 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:39.678 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:39.678 -07 000000626 INF: FPGA: Recv ZSGSRD 36464
17-03-17 21:04:39.688 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:39.688 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:39.688 -07 000000476 INF: FPGA: Recv ZSGSRD 36461
17-03-17 21:04:39.698 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:39.698 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:39.698 -07 000000382 INF: FPGA: Recv ZSGSRD 36461
17-03-17 21:04:39.708 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:39.708 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:39.708 -07 000000433 INF: FPGA: Recv ZSGSRD 36465
17-03-17 21:04:39.718 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:39.718 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:39.718 -07 000000576 INF: FPGA: Recv ZSGSRD 36458
17-03-17 21:04:39.728 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:39.728 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:39.728 -07 000000382 INF: FPGA: Recv ZSGSRD 36457
17-03-17 21:04:39.738 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:39.738 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:39.738 -07 000000627 INF: FPGA: Recv ZSGSRD 36456
17-03-17 21:04:39.748 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:39.748 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:39.748 -07 000000424 INF: FPGA: Recv ZPIEZORD 32794
17-03-17 21:04:39.758 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:39.758 -07 000000429 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.818 V. Piezo Error = -8.1 V.
17-03-17 21:04:39.758 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36459 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36458 (-173.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36453 (-173.6 uncal um), Max = 36465 (-173.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:04:39.758 -07 000000429 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36459, posNoise = 6, negNoise = 6
17-03-17 21:04:39.758 -07 000000429 INF: Z Motor: After move to -0.174543, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:39.758 -07 000000429 INF: Z Motor: Settle wait time = 1442 ms, measure time = 104 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:04:39.758 -07 000000429 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:04:39.808 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 21:04:39.808 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:04:39.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:39.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:39.808 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:39.808 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:39.808 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:04:39.808 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:39.808 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:04:39.808 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:04:39.818 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:04:39.818 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:04:39.828 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:04:39.828 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:04:39.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:04:39.878 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:04:40.068 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:04:40.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:04:40.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:04:40.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:04:40.108 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:04:40.118 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 21:04:40.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 21:04:40.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:04:40.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:40.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:04:40.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:04:40.218 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:04:40.218 -07 000000433 INF: Autofocus start
17-03-17 21:04:40.218 -07 000000433 INF: MeasureProfile start
17-03-17 21:04:40.218 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:04:40.228 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:04:40.228 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:04:40.228 -07 000000433 INF: MeasureProfile done
17-03-17 21:04:40.228 -07 000000433 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:04:40.228 -07 000000433 INF: Autofocus finished
17-03-17 21:04:40.428 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:04:40.428 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:04:40.428 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174543702487598. ----------
17-03-17 21:04:40.428 -07 000000610 INF: Cycle	46	Tile	15	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:04:40.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36644, sync = True, waitForSettling = True)
17-03-17 21:04:40.438 -07 000000610 INF: Z Motor: Moving to -0.167745 mm, started at -0.174544 mm, distance = 6.80 um
17-03-17 21:04:40.438 -07 000000610 INF: FPGA: Xmit ZDACW 36644\n [Z Motor]
17-03-17 21:04:40.438 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 21:04:40.448 -07 000000610 INF: FPGA: 'ZDACW 36644' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:04:40.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:40.448 -07 000000627 INF: FPGA: Recv ZDACR 36644
17-03-17 21:04:40.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:40.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:04:40.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:40.608 -07 000000382 INF: FPGA: Recv ZSGSRD 35401
17-03-17 21:04:40.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:40.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:40.618 -07 000000431 INF: FPGA: Recv ZSGSRD 35406
17-03-17 21:04:40.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:40.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:40.628 -07 000000433 INF: FPGA: Recv ZSGSRD 35402
17-03-17 21:04:40.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:40.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:40.638 -07 000000618 INF: FPGA: Recv ZSGSRD 35401
17-03-17 21:04:40.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:40.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:40.648 -07 000000438 INF: FPGA: Recv ZSGSRD 35408
17-03-17 21:04:40.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:40.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:40.658 -07 000000476 INF: FPGA: Recv ZSGSRD 35396
17-03-17 21:04:40.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:40.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:40.668 -07 000000541 INF: FPGA: Recv ZSGSRD 35399
17-03-17 21:04:40.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:40.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:40.678 -07 000000618 INF: FPGA: Recv ZSGSRD 35408
17-03-17 21:04:40.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:40.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:40.688 -07 000000438 INF: FPGA: Recv ZSGSRD 35400
17-03-17 21:04:40.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:40.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:40.698 -07 000000476 INF: FPGA: Recv ZSGSRD 35404
17-03-17 21:04:40.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:40.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:40.708 -07 000000541 INF: FPGA: Recv ZPIEZORD 31369
17-03-17 21:04:40.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:40.718 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.592 V. Piezo Error = -8.9 V.
17-03-17 21:04:40.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35402 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35402 (-166.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35396 (-166.8 uncal um), Max = 35408 (-166.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:04:40.718 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35402, posNoise = 6, negNoise = 6
17-03-17 21:04:40.718 -07 000000610 INF: Z Motor: After move to -0.167745, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:40.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:04:40.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:40.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:40.718 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:40.718 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:40.718 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:04:40.718 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:04:40.718 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:04:40.718 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:40.718 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:04:40.718 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:04:40.718 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:04:40.718 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:04:40.728 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:04:40.728 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:04:40.728 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:04:40.728 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:04:40.738 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:04:40.738 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:04:40.738 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:04:40.738 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:04:40.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 36821 150\n [Camera]
17-03-17 21:04:40.938 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:04:41.358 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:04:41.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:04:41.358 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:41.358 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:41.358 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1129910432, 0x0, 391868352) start.
17-03-17 21:04:41.368 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:04:41.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:04:41.368 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:41.488 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:41.488 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:04:41.558 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36821 810
17-03-17 21:04:41.708 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:04:41.748 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1129910432, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:04:41.748 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:04:41.748 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:41.748 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:41.748 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:04:41.838 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:04:41.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:04:41.868 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:04:41.868 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:04:41.868 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:41.868 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:41.878 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 510 ms.
17-03-17 21:04:41.908 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:04:41.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:04:41.908 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:41.908 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:04:41.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:04:41.908 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:41.918 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:41.918 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1059065904, 0x0, 391868352) start.
17-03-17 21:04:41.918 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:41.918 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1094488168, 0x0, 418435064) start.
17-03-17 21:04:42.098 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-17 21:04:42.098 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:04:42.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 36821 150' command took 2 ms to send, 1356 ms to get response, and 1363 ms overall
17-03-17 21:04:42.098 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167965
17-03-17 21:04:42.098 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16797 mm
17-03-17 21:04:42.098 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:04:42.108 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:04:42.108 -07 000000618 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 21:04:42.108 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:42.108 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 36692, sync = True, waitForSettling = False)
17-03-17 21:04:42.108 -07 000000627 INF: Z Motor: Moving to -0.167965 mm, started at -0.167753 mm, distance = -0.21 um
17-03-17 21:04:42.108 -07 000000626 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:04:42.118 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:04:42.118 -07 000000618 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:42.118 -07 000000618 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:04:42.118 -07 000000618 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:04:42.118 -07 000000627 INF: FPGA: Xmit ZDACW 36692\n [Z Motor]
17-03-17 21:04:42.118 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 21:04:42.128 -07 000000627 INF: FPGA: 'ZDACW 36692' command took 3 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:04:42.128 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:04:42.138 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:42.138 -07 000000012 INF: FPGA: Recv ZDACR 36692
17-03-17 21:04:42.148 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:04:42.148 -07 000000627 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 21:04:42.298 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1094488168, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:04:42.298 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:04:42.298 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:42.298 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1059065904, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:04:42.298 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:04:42.298 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:42.298 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:42.308 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:04:42.308 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:04:42.308 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:04:42.498 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:04:42.498 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 21:04:42.538 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:42.538 -07 000000541 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:04:42.548 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:04:42.548 -07 000000618 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:42.548 -07 000000618 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:04:42.548 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.844 mm, average velocity = 2.192 mm/sec
17-03-17 21:04:43.498 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:43.498 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.007176,
17-03-17 21:04:43.498 -07 000000476 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:04:43.508 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:43.508 -07 000000618 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:43.528 -07 000000618 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:04:43.528 -07 000000618 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:04:43.528 -07 000000618 INF: Y Motor: Moved to 72.3491 after 1424 ms (table move)
17-03-17 21:04:43.528 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167965 mm (DAC = 36692)
17-03-17 21:04:43.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:43.538 -07 000000438 INF: FPGA: Recv ZSGSRD 35439
17-03-17 21:04:43.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:04:43.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:43.548 -07 000000459 INF: FPGA: Recv ZSGSRD 35441
17-03-17 21:04:43.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:43.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:43.568 -07 000000626 INF: FPGA: Recv ZSGSRD 35437
17-03-17 21:04:43.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:04:43.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:43.578 -07 000000433 INF: FPGA: Recv ZSGSRD 35435
17-03-17 21:04:43.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:43.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:43.588 -07 000000438 INF: FPGA: Recv ZSGSRD 35440
17-03-17 21:04:43.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:43.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:43.598 -07 000000382 INF: FPGA: Recv ZSGSRD 35435
17-03-17 21:04:43.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:43.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:43.608 -07 000000618 INF: FPGA: Recv ZSGSRD 35431
17-03-17 21:04:43.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:43.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:43.628 -07 000000627 INF: FPGA: Recv ZSGSRD 35444
17-03-17 21:04:43.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:04:43.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:43.638 -07 000000618 INF: FPGA: Recv ZSGSRD 35432
17-03-17 21:04:43.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:43.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:43.648 -07 000000433 INF: FPGA: Recv ZSGSRD 35438
17-03-17 21:04:43.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:43.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:43.658 -07 000000438 INF: FPGA: Recv ZPIEZORD 31435
17-03-17 21:04:43.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:43.668 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.599 V. Piezo Error = -8.8 V.
17-03-17 21:04:43.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35437 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35438 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35431 (-167.1 uncal um), Max = 35444 (-167.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:04:43.668 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35437, posNoise = 7, negNoise = 6
17-03-17 21:04:43.668 -07 000000610 INF: Z Motor: After move to -0.167965, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:43.668 -07 000000610 INF: Z Motor: Settle wait time = 1425 ms, measure time = 134 ms (allowed 150 ms), total time = 1559 ms
17-03-17 21:04:43.668 -07 000000610 INF: Z Motor: Waiting extra 16 ms after reading position to reach expected total of 150 ms
17-03-17 21:04:43.688 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 21:04:43.688 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:04:43.688 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.167978157678718. ----------
17-03-17 21:04:43.688 -07 000000610 INF: Cycle	46	Tile	16	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:04:43.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36515, sync = True, waitForSettling = True)
17-03-17 21:04:43.698 -07 000000610 INF: Z Motor: Moving to -0.167155 mm, started at -0.167978 mm, distance = 0.82 um
17-03-17 21:04:43.698 -07 000000610 INF: FPGA: Xmit ZDACW 36515\n [Z Motor]
17-03-17 21:04:43.698 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:04:43.708 -07 000000610 INF: FPGA: 'ZDACW 36515' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:43.708 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:43.708 -07 000000429 INF: FPGA: Recv ZDACR 36515
17-03-17 21:04:43.718 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:43.718 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:04:43.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:43.868 -07 000000541 INF: FPGA: Recv ZSGSRD 35308
17-03-17 21:04:43.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:43.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:43.878 -07 000000476 INF: FPGA: Recv ZSGSRD 35318
17-03-17 21:04:43.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:43.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:43.888 -07 000000501 INF: FPGA: Recv ZSGSRD 35311
17-03-17 21:04:43.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:43.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:43.898 -07 000000429 INF: FPGA: Recv ZSGSRD 35308
17-03-17 21:04:43.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:43.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:43.908 -07 000000627 INF: FPGA: Recv ZSGSRD 35312
17-03-17 21:04:43.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:43.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:43.918 -07 000000382 INF: FPGA: Recv ZSGSRD 35314
17-03-17 21:04:43.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:43.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:43.938 -07 000000618 INF: FPGA: Recv ZSGSRD 35309
17-03-17 21:04:43.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:04:43.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:43.968 -07 000000431 INF: FPGA: Recv ZSGSRD 35302
17-03-17 21:04:43.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:04:43.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:43.988 -07 000000431 INF: FPGA: Recv ZSGSRD 35307
17-03-17 21:04:43.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:04:44.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:44.008 -07 000000626 INF: FPGA: Recv ZSGSRD 35310
17-03-17 21:04:44.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:04:44.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:44.018 -07 000000501 INF: FPGA: Recv ZPIEZORD 31266
17-03-17 21:04:44.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:44.028 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.572 V. Piezo Error = -8.9 V.
17-03-17 21:04:44.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35310 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35310 (-166.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35302 (-166.2 uncal um), Max = 35318 (-166.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:04:44.028 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35310, posNoise = 8, negNoise = 8
17-03-17 21:04:44.028 -07 000000610 INF: Z Motor: After move to -0.167155, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:44.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-17 21:04:44.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:44.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:44.028 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:44.028 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:44.028 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:04:44.028 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:44.028 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:04:44.028 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:04:44.028 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:04:44.028 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:04:44.028 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:04:44.028 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:04:44.038 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:04:44.038 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:04:44.038 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:04:44.038 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:04:44.048 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:04:44.048 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:04:44.048 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:04:44.048 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:04:44.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 36692 150\n [Camera]
17-03-17 21:04:44.248 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:04:44.668 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:04:44.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:04:44.678 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:44.678 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:44.678 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) start.
17-03-17 21:04:44.678 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:04:44.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:04:44.678 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:44.678 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:44.678 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 21:04:44.868 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36692 810
17-03-17 21:04:45.018 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:04:45.058 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 656674232, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:04:45.058 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:04:45.058 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:45.058 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:04:45.178 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 497 ms.
17-03-17 21:04:45.178 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:45.178 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 119 ms.
17-03-17 21:04:45.178 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-17 21:04:45.178 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:45.188 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-17 21:04:45.218 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:04:45.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:04:45.218 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:45.218 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:04:45.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:04:45.228 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:45.228 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:45.228 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 21:04:45.228 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:45.228 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:04:45.408 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:04:45.408 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:04:45.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 36692 150' command took 2 ms to send, 1358 ms to get response, and 1364 ms overall
17-03-17 21:04:45.408 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167647
17-03-17 21:04:45.418 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16765 mm
17-03-17 21:04:45.418 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:04:45.418 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:04:45.418 -07 000000382 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 21:04:45.418 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:45.418 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 36622, sync = True, waitForSettling = False)
17-03-17 21:04:45.418 -07 000000431 INF: Z Motor: Moving to -0.167645 mm, started at -0.167162 mm, distance = -0.48 um
17-03-17 21:04:45.418 -07 000000429 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:04:45.428 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:04:45.428 -07 000000431 INF: FPGA: Xmit ZDACW 36622\n [Z Motor]
17-03-17 21:04:45.428 -07 000000382 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:45.428 -07 000000382 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:04:45.428 -07 000000382 INF: Y Motor: Moving 1350 steps-28
17-03-17 21:04:45.428 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 21:04:45.438 -07 000000431 INF: FPGA: 'ZDACW 36622' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:04:45.438 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:45.438 -07 000000424 INF: FPGA: Recv ZDACR 36622
17-03-17 21:04:45.448 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:04:45.448 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:45.448 -07 000000431 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 21:04:45.608 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:04:45.608 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:04:45.608 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:45.608 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 21:04:45.608 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:04:45.608 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:45.608 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:45.608 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:04:45.618 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:45.618 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:04:45.818 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:04:45.818 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:04:45.858 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:45.858 -07 000000541 INF: FPGA: Recv YRDPOS 149863
17-03-17 21:04:45.868 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:04:45.868 -07 000000382 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:45.868 -07 000000382 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 21:04:45.868 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.125 mm/sec
17-03-17 21:04:46.818 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:46.818 -07 000000627 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:04:46.828 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:46.828 -07 000000382 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:46.838 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:04:46.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:04:46.848 -07 000000382 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:04:46.848 -07 000000382 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:04:46.848 -07 000000382 INF: Y Motor: Moved to 73.1758 after 1429 ms (table move)
17-03-17 21:04:46.848 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167645 mm (DAC = 36622)
17-03-17 21:04:46.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:46.858 -07 000000618 INF: FPGA: Recv ZSGSRD 35390
17-03-17 21:04:46.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 21:04:46.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:46.858 -07 000000431 INF: FPGA: Recv ZSGSRD 35387
17-03-17 21:04:46.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:04:46.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:46.868 -07 000000433 INF: FPGA: Recv ZSGSRD 35383
17-03-17 21:04:46.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:46.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:46.878 -07 000000382 INF: FPGA: Recv ZSGSRD 35393
17-03-17 21:04:46.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:46.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:46.888 -07 000000438 INF: FPGA: Recv ZSGSRD 35386
17-03-17 21:04:46.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:46.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:46.898 -07 000000431 INF: FPGA: Recv ZSGSRD 35391
17-03-17 21:04:46.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:46.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:46.908 -07 000000476 INF: FPGA: Recv ZSGSRD 35383
17-03-17 21:04:46.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:46.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:46.918 -07 000000382 INF: FPGA: Recv ZSGSRD 35383
17-03-17 21:04:46.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:46.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:46.928 -07 000000438 INF: FPGA: Recv ZSGSRD 35379
17-03-17 21:04:46.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:46.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:46.938 -07 000000429 INF: FPGA: Recv ZSGSRD 35385
17-03-17 21:04:46.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:46.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:46.948 -07 000000431 INF: FPGA: Recv ZPIEZORD 31371
17-03-17 21:04:46.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:46.958 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.588 V. Piezo Error = -8.9 V.
17-03-17 21:04:46.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35386 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35386 (-166.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35379 (-166.7 uncal um), Max = 35393 (-166.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:04:46.958 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35386, posNoise = 7, negNoise = 7
17-03-17 21:04:46.958 -07 000000610 INF: Z Motor: After move to -0.167645, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:46.958 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 104 ms (allowed 150 ms), total time = 1536 ms
17-03-17 21:04:46.958 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:04:47.008 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 21:04:47.008 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:04:47.008 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.167650522859488. ----------
17-03-17 21:04:47.008 -07 000000610 INF: Cycle	46	Tile	17	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:04:47.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36446, sync = True, waitForSettling = True)
17-03-17 21:04:47.008 -07 000000610 INF: Z Motor: Moving to -0.166839 mm, started at -0.167651 mm, distance = 0.81 um
17-03-17 21:04:47.008 -07 000000610 INF: FPGA: Xmit ZDACW 36446\n [Z Motor]
17-03-17 21:04:47.008 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:04:47.018 -07 000000610 INF: FPGA: 'ZDACW 36446' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:04:47.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:47.018 -07 000000541 INF: FPGA: Recv ZDACR 36446
17-03-17 21:04:47.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:04:47.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:04:47.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:47.178 -07 000000424 INF: FPGA: Recv ZSGSRD 35260
17-03-17 21:04:47.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:47.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:47.188 -07 000000501 INF: FPGA: Recv ZSGSRD 35259
17-03-17 21:04:47.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:47.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:47.198 -07 000000476 INF: FPGA: Recv ZSGSRD 35265
17-03-17 21:04:47.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:47.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:47.208 -07 000000541 INF: FPGA: Recv ZSGSRD 35266
17-03-17 21:04:47.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:47.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:47.218 -07 000000424 INF: FPGA: Recv ZSGSRD 35262
17-03-17 21:04:47.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:47.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:47.228 -07 000000433 INF: FPGA: Recv ZSGSRD 35262
17-03-17 21:04:47.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:47.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:47.248 -07 000000476 INF: FPGA: Recv ZSGSRD 35256
17-03-17 21:04:47.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 8 ms to send, 1 ms to get response, and 11 ms overall
17-03-17 21:04:47.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:47.248 -07 000000576 INF: FPGA: Recv ZSGSRD 35262
17-03-17 21:04:47.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:04:47.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:47.258 -07 000000429 INF: FPGA: Recv ZSGSRD 35262
17-03-17 21:04:47.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:47.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:47.268 -07 000000431 INF: FPGA: Recv ZSGSRD 35263
17-03-17 21:04:47.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:04:47.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:47.278 -07 000000433 INF: FPGA: Recv ZPIEZORD 31200
17-03-17 21:04:47.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:47.288 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.561 V. Piezo Error = -9.0 V.
17-03-17 21:04:47.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35262 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35262 (-166.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35256 (-165.9 uncal um), Max = 35266 (-166.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:04:47.288 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35262, posNoise = 4, negNoise = 6
17-03-17 21:04:47.288 -07 000000610 INF: Z Motor: After move to -0.166839, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:47.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:04:47.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:47.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:47.288 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:47.288 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:47.288 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:04:47.288 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:04:47.288 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:47.288 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:04:47.288 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:04:47.288 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:04:47.288 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:04:47.288 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:04:47.298 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:04:47.298 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:04:47.298 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:04:47.298 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:04:47.308 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:04:47.308 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 21:04:47.308 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:04:47.308 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 21:04:47.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 36622 150\n [Camera]
17-03-17 21:04:47.518 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:04:47.938 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:04:47.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:04:47.938 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:47.938 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:47.938 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1059065904, 0x0, 391868352) start.
17-03-17 21:04:47.938 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:04:47.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:04:47.948 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:47.948 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:47.948 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1094488168, 0x0, 418435064) start.
17-03-17 21:04:48.128 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36622 810
17-03-17 21:04:48.278 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:04:48.318 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1059065904, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:04:48.318 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:04:48.318 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:48.318 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1094488168, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:04:48.318 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:04:48.318 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:48.318 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:48.328 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:04:48.328 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:48.328 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:04:48.488 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:04:48.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:04:48.488 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:48.488 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:48.488 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1129910432, 0x0, 391868352) start.
17-03-17 21:04:48.488 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:04:48.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:04:48.498 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:48.498 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:48.498 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:04:48.678 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-17 21:04:48.678 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:04:48.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 36622 150' command took 2 ms to send, 1355 ms to get response, and 1363 ms overall
17-03-17 21:04:48.678 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.167257
17-03-17 21:04:48.678 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16726 mm
17-03-17 21:04:48.678 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:04:48.678 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:04:48.678 -07 000000429 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 21:04:48.688 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:48.688 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 36537, sync = True, waitForSettling = False)
17-03-17 21:04:48.688 -07 000000618 INF: Z Motor: Moving to -0.167256 mm, started at -0.166854 mm, distance = -0.40 um
17-03-17 21:04:48.688 -07 000000382 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:04:48.698 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:48.698 -07 000000429 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:48.698 -07 000000429 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:04:48.698 -07 000000429 INF: Y Motor: Moving 1355 steps-35
17-03-17 21:04:48.698 -07 000000618 INF: FPGA: Xmit ZDACW 36537\n [Z Motor]
17-03-17 21:04:48.698 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:04:48.708 -07 000000618 INF: FPGA: 'ZDACW 36537' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:04:48.708 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:48.708 -07 000000627 INF: FPGA: Recv ZDACR 36537
17-03-17 21:04:48.718 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:04:48.718 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:48.718 -07 000000618 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 21:04:48.868 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1129910432, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:04:48.868 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:04:48.868 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:48.878 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:04:48.878 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:04:48.878 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:48.878 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:48.878 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:04:48.878 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:48.888 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.016692,
17-03-17 21:04:48.888 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:04:49.088 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:04:49.088 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:04:49.118 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:49.128 -07 000000476 INF: FPGA: Recv YRDPOS 151567
17-03-17 21:04:49.128 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:04:49.128 -07 000000429 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:49.128 -07 000000429 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:04:49.128 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.847 mm, average velocity = 2.128 mm/sec
17-03-17 21:04:50.078 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:50.078 -07 000000541 INF: FPGA: Recv YRDPOS 151567
17-03-17 21:04:50.088 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:50.088 -07 000000429 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:50.098 -07 000000429 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:04:50.098 -07 000000429 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:04:50.098 -07 000000429 INF: Y Motor: Moved to 74.0073 after 1417 ms (table move)
17-03-17 21:04:50.098 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167256 mm (DAC = 36537)
17-03-17 21:04:50.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.108 -07 000000438 INF: FPGA: Recv ZSGSRD 35327
17-03-17 21:04:50.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:50.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.118 -07 000000382 INF: FPGA: Recv ZSGSRD 35321
17-03-17 21:04:50.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:50.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.128 -07 000000627 INF: FPGA: Recv ZSGSRD 35327
17-03-17 21:04:50.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:50.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.138 -07 000000012 INF: FPGA: Recv ZSGSRD 35328
17-03-17 21:04:50.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:50.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.148 -07 000000431 INF: FPGA: Recv ZSGSRD 35332
17-03-17 21:04:50.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:50.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.158 -07 000000576 INF: FPGA: Recv ZSGSRD 35329
17-03-17 21:04:50.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:50.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.168 -07 000000433 INF: FPGA: Recv ZSGSRD 35321
17-03-17 21:04:50.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:50.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.178 -07 000000459 INF: FPGA: Recv ZSGSRD 35321
17-03-17 21:04:50.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:50.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.188 -07 000000431 INF: FPGA: Recv ZSGSRD 35322
17-03-17 21:04:50.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:50.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.198 -07 000000576 INF: FPGA: Recv ZSGSRD 35321
17-03-17 21:04:50.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:50.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:50.208 -07 000000429 INF: FPGA: Recv ZPIEZORD 31304
17-03-17 21:04:50.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:50.218 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.575 V. Piezo Error = -8.9 V.
17-03-17 21:04:50.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35325 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35324 (-166.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35321 (-166.4 uncal um), Max = 35332 (-166.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:04:50.218 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35325, posNoise = 7, negNoise = 4
17-03-17 21:04:50.218 -07 000000610 INF: Z Motor: After move to -0.167256, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:50.218 -07 000000610 INF: Z Motor: Settle wait time = 1419 ms, measure time = 111 ms (allowed 150 ms), total time = 1530 ms
17-03-17 21:04:50.218 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 21:04:50.258 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1572 ms
17-03-17 21:04:50.258 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:04:50.258 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.167258645918841. ----------
17-03-17 21:04:50.258 -07 000000610 INF: Cycle	46	Tile	18	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:04:50.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36361, sync = True, waitForSettling = True)
17-03-17 21:04:50.258 -07 000000610 INF: Z Motor: Moving to -0.166450 mm, started at -0.167259 mm, distance = 0.81 um
17-03-17 21:04:50.258 -07 000000610 INF: FPGA: Xmit ZDACW 36361\n [Z Motor]
17-03-17 21:04:50.258 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:04:50.268 -07 000000610 INF: FPGA: 'ZDACW 36361' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:04:50.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:50.268 -07 000000618 INF: FPGA: Recv ZDACR 36361
17-03-17 21:04:50.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:50.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:04:50.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.428 -07 000000501 INF: FPGA: Recv ZSGSRD 35203
17-03-17 21:04:50.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:50.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.438 -07 000000424 INF: FPGA: Recv ZSGSRD 35201
17-03-17 21:04:50.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:50.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.448 -07 000000012 INF: FPGA: Recv ZSGSRD 35203
17-03-17 21:04:50.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:04:50.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.458 -07 000000627 INF: FPGA: Recv ZSGSRD 35206
17-03-17 21:04:50.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:50.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.468 -07 000000618 INF: FPGA: Recv ZSGSRD 35200
17-03-17 21:04:50.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:50.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.478 -07 000000382 INF: FPGA: Recv ZSGSRD 35196
17-03-17 21:04:50.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:50.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.488 -07 000000012 INF: FPGA: Recv ZSGSRD 35202
17-03-17 21:04:50.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:50.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.498 -07 000000459 INF: FPGA: Recv ZSGSRD 35201
17-03-17 21:04:50.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:50.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.508 -07 000000576 INF: FPGA: Recv ZSGSRD 35201
17-03-17 21:04:50.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:50.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:50.518 -07 000000424 INF: FPGA: Recv ZSGSRD 35197
17-03-17 21:04:50.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:50.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:50.528 -07 000000012 INF: FPGA: Recv ZPIEZORD 31133
17-03-17 21:04:50.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:50.538 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.548 V. Piezo Error = -9.0 V.
17-03-17 21:04:50.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35201 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35201 (-165.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35196 (-165.6 uncal um), Max = 35206 (-165.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:04:50.538 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35201, posNoise = 5, negNoise = 5
17-03-17 21:04:50.538 -07 000000610 INF: Z Motor: After move to -0.166450, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:50.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:04:50.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:50.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:50.538 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:50.538 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:50.538 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:04:50.538 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:04:50.538 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:04:50.538 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:50.538 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:04:50.538 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:04:50.538 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:04:50.538 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:04:50.538 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:04:50.538 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:04:50.548 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:04:50.548 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:04:50.558 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 21:04:50.558 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 21:04:50.558 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 21:04:50.558 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:04:50.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 36537 150\n [Camera]
17-03-17 21:04:50.758 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:04:51.188 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:04:51.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:04:51.188 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:51.188 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:51.188 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:04:51.188 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:04:51.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:04:51.188 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:51.188 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:51.188 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:04:51.378 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36537 810
17-03-17 21:04:51.528 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:04:51.568 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:04:51.568 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:04:51.568 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:51.568 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:04:51.568 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:04:51.568 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:51.568 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:51.568 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:04:51.568 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:04:51.578 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:04:51.728 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:04:51.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:04:51.738 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:51.738 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:51.738 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:04:51.738 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:04:51.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:04:51.738 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:51.738 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:51.738 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:04:51.838 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:04:51.838 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:04:51.928 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-17 21:04:51.928 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:04:51.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 36537 150' command took 2 ms to send, 1351 ms to get response, and 1363 ms overall
17-03-17 21:04:51.928 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:04:51.928 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.166462043613262. ------
17-03-17 21:04:51.928 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:04:51.928 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17280 mm
17-03-17 21:04:51.928 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:04:51.938 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:04:51.938 -07 000000576 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-17 21:04:51.938 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 37747, sync = True, waitForSettling = False)
17-03-17 21:04:51.938 -07 000000541 INF: Z Motor: Moving to -0.172795 mm, started at -0.166462 mm, distance = -6.33 um
17-03-17 21:04:51.938 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:04:51.938 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 21:04:51.938 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:51.938 -07 000000429 INF: FPGA: Recv YRDPOS 151567
17-03-17 21:04:51.948 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:04:51.948 -07 000000576 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:51.948 -07 000000576 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:04:51.948 -07 000000576 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:04:51.948 -07 000000541 INF: FPGA: Xmit ZDACW 37747\n [Z Motor]
17-03-17 21:04:51.948 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 21:04:51.958 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:04:51.958 -07 000000541 INF: FPGA: 'ZDACW 37747' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:04:51.968 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:04:51.978 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:51.978 -07 000000459 INF: FPGA: Recv ZDACR 37747
17-03-17 21:04:51.988 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:04:51.988 -07 000000541 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:04:52.118 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 21:04:52.118 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 21:04:52.118 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:04:52.118 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:52.118 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:04:52.118 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:52.128 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:04:52.128 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:04:52.128 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:04:52.138 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:04:52.158 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:04:52.158 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 21:04:52.338 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:04:52.338 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:04:52.368 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:52.368 -07 000000627 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:04:52.378 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:04:52.378 -07 000000576 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:52.378 -07 000000576 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 21:04:52.378 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-17 21:04:53.328 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:53.328 -07 000000424 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:04:53.338 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:53.338 -07 000000576 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:53.348 -07 000000576 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:04:53.348 -07 000000576 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:04:53.348 -07 000000576 INF: Y Motor: Moved to 74.8315 after 1414 ms (table move)
17-03-17 21:04:53.348 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172795 mm (DAC = 37747)
17-03-17 21:04:53.348 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:53.358 -07 000000429 INF: FPGA: Recv ZSGSRD 36184
17-03-17 21:04:53.368 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:53.368 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:53.368 -07 000000424 INF: FPGA: Recv ZSGSRD 36187
17-03-17 21:04:53.378 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:53.378 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:53.378 -07 000000476 INF: FPGA: Recv ZSGSRD 36185
17-03-17 21:04:53.388 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:53.388 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:53.388 -07 000000012 INF: FPGA: Recv ZSGSRD 36183
17-03-17 21:04:53.398 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:53.398 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:53.398 -07 000000627 INF: FPGA: Recv ZSGSRD 36185
17-03-17 21:04:53.408 -07 000000382 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:53.408 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:53.408 -07 000000541 INF: FPGA: Recv ZSGSRD 36197
17-03-17 21:04:53.418 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:53.418 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:53.418 -07 000000618 INF: FPGA: Recv ZSGSRD 36193
17-03-17 21:04:53.428 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:53.428 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:53.428 -07 000000012 INF: FPGA: Recv ZSGSRD 36186
17-03-17 21:04:53.438 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:53.438 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:53.438 -07 000000626 INF: FPGA: Recv ZSGSRD 36190
17-03-17 21:04:53.448 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:53.448 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:53.448 -07 000000501 INF: FPGA: Recv ZSGSRD 36185
17-03-17 21:04:53.458 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:53.458 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:53.458 -07 000000476 INF: FPGA: Recv ZPIEZORD 32499
17-03-17 21:04:53.468 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:53.468 -07 000000382 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.760 V. Piezo Error = -8.2 V.
17-03-17 21:04:53.468 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36188 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36186 (-171.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36183 (-171.9 uncal um), Max = 36197 (-172.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:04:53.468 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36188, posNoise = 9, negNoise = 5
17-03-17 21:04:53.468 -07 000000382 INF: Z Motor: After move to -0.172795, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:53.468 -07 000000382 INF: Z Motor: Settle wait time = 1417 ms, measure time = 111 ms (allowed 150 ms), total time = 1528 ms
17-03-17 21:04:53.468 -07 000000382 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 21:04:53.508 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1570 ms
17-03-17 21:04:53.508 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:04:53.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:53.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:53.508 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:53.508 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:53.508 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:04:53.508 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:53.508 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:04:53.508 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:04:53.518 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:04:53.518 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:04:53.528 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:04:53.528 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:04:53.528 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:04:53.578 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:04:53.778 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:04:53.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:04:53.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:04:53.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:04:53.818 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:04:53.818 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 21:04:53.818 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 21:04:53.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:04:53.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:53.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:04:53.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 21:04:53.918 -07 000000626 INF: Autofocus start
17-03-17 21:04:53.918 -07 000000626 INF: MeasureProfile start
17-03-17 21:04:53.918 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:04:53.918 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:04:53.928 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:04:53.928 -07 000000626 INF: MeasureProfile done
17-03-17 21:04:53.928 -07 000000626 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:04:53.928 -07 000000626 INF: Autofocus finished
17-03-17 21:04:53.938 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:04:54.138 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:04:54.138 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 21:04:54.138 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.17280274099718. ----------
17-03-17 21:04:54.138 -07 000000610 INF: Cycle	46	Tile	19	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:04:54.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36244, sync = True, waitForSettling = True)
17-03-17 21:04:54.148 -07 000000610 INF: Z Motor: Moving to -0.165914 mm, started at -0.172803 mm, distance = 6.89 um
17-03-17 21:04:54.148 -07 000000610 INF: FPGA: Xmit ZDACW 36244\n [Z Motor]
17-03-17 21:04:54.148 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:04:54.158 -07 000000610 INF: FPGA: 'ZDACW 36244' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:04:54.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:54.158 -07 000000424 INF: FPGA: Recv ZDACR 36244
17-03-17 21:04:54.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:54.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:04:54.248 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.011254,
17-03-17 21:04:54.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:54.318 -07 000000459 INF: FPGA: Recv ZSGSRD 35114
17-03-17 21:04:54.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:54.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:54.328 -07 000000482 INF: FPGA: Recv ZSGSRD 35119
17-03-17 21:04:54.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:54.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:54.338 -07 000000627 INF: FPGA: Recv ZSGSRD 35120
17-03-17 21:04:54.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:54.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:54.348 -07 000000012 INF: FPGA: Recv ZSGSRD 35113
17-03-17 21:04:54.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:54.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:54.358 -07 000000431 INF: FPGA: Recv ZSGSRD 35122
17-03-17 21:04:54.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:54.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:54.378 -07 000000438 INF: FPGA: Recv ZSGSRD 35122
17-03-17 21:04:54.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:04:54.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:54.388 -07 000000429 INF: FPGA: Recv ZSGSRD 35105
17-03-17 21:04:54.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:54.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:54.398 -07 000000576 INF: FPGA: Recv ZSGSRD 35115
17-03-17 21:04:54.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:54.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:54.408 -07 000000618 INF: FPGA: Recv ZSGSRD 35120
17-03-17 21:04:54.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:54.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:04:54.418 -07 000000382 INF: FPGA: Recv ZSGSRD 35119
17-03-17 21:04:54.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:54.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:04:54.428 -07 000000431 INF: FPGA: Recv ZPIEZORD 31068
17-03-17 21:04:54.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:04:54.438 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.530 V. Piezo Error = -8.9 V.
17-03-17 21:04:54.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35117 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35119 (-165.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35105 (-165.0 uncal um), Max = 35122 (-165.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 21:04:54.438 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35117, posNoise = 5, negNoise = 12
17-03-17 21:04:54.438 -07 000000610 INF: Z Motor: After move to -0.165914, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:04:54.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 21:04:54.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:04:54.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:04:54.438 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:04:54.438 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:04:54.438 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:04:54.438 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:04:54.438 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:04:54.438 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:04:54.438 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:04:54.438 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:04:54.438 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:04:54.438 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:04:54.448 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:04:54.448 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:04:54.448 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:04:54.448 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:04:54.458 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:04:54.458 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:04:54.458 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:04:54.458 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:04:54.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 36421 150\n [Camera]
17-03-17 21:04:54.668 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:04:55.088 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 619
17-03-17 21:04:55.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 619
17-03-17 21:04:55.088 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:55.088 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:55.088 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 21:04:55.098 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 619
17-03-17 21:04:55.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 619
17-03-17 21:04:55.098 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:55.098 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:55.098 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:04:55.278 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36421 810
17-03-17 21:04:55.428 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:04:55.468 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:04:55.468 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:04:55.468 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:55.468 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:04:55.468 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:04:55.598 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:55.608 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 136 ms.
17-03-17 21:04:55.608 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 21:04:55.608 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:04:55.618 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-17 21:04:55.638 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:04:55.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:04:55.638 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:04:55.638 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:04:55.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:04:55.638 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:04:55.648 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:04:55.648 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:04:55.648 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:04:55.648 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:04:55.828 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-17 21:04:55.828 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:04:55.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 36421 150' command took 2 ms to send, 1355 ms to get response, and 1363 ms overall
17-03-17 21:04:56.028 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:04:56.028 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:04:56.028 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:56.028 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:56.028 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:04:56.028 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:04:56.028 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:04:56.038 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:04:56.038 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:04:56.038 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:04:56.048 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:04:56.078 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 21:04:56.078 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:04:56.118 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 21:04:56.118 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 21:04:56.118 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:04:56.118 -07 000000459 INF: FPGA: Recv EMCUR 
17-03-17 21:04:56.128 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:04:56.128 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 21:04:56.628 -07 000000433 INF: FPGA: Recv EMIN
17-03-17 21:04:56.628 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 492 ms to get response, and 502 ms overall
17-03-17 21:04:56.628 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 21:04:56.628 -07 000000424 INF: FPGA: Recv EMCUR 
17-03-17 21:04:56.638 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:04:56.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:04:56.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.165922409793354. ------
17-03-17 21:04:56.638 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:04:56.638 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14038 mm
17-03-17 21:04:56.638 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:04:56.638 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:04:56.638 -07 000000012 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 21:04:56.638 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30666, sync = True, waitForSettling = False)
17-03-17 21:04:56.638 -07 000000459 INF: Z Motor: Moving to -0.140380 mm, started at -0.165922 mm, distance = 25.54 um
17-03-17 21:04:56.648 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:04:56.648 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:04:56.648 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:04:56.648 -07 000000431 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:04:56.658 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:04:56.658 -07 000000012 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:04:56.658 -07 000000459 INF: FPGA: Xmit ZDACW 30666\n [Z Motor]
17-03-17 21:04:56.658 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 21:04:56.658 -07 000000012 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 21:04:56.658 -07 000000012 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:04:56.668 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:04:56.668 -07 000000459 INF: FPGA: 'ZDACW 30666' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 21:04:56.678 -07 000000012 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:04:56.688 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:04:56.688 -07 000000438 INF: FPGA: Recv ZDACR 30666
17-03-17 21:04:56.698 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:04:56.698 -07 000000459 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 21:04:56.838 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:04:56.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:04:56.868 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:04:56.868 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:04:58.298 -07 000000429 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 21:04:58.298 -07 000000012 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1640 ms overall
17-03-17 21:04:58.298 -07 000000012 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:04:58.298 -07 000000012 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 21:04:58.298 -07 000000012 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1641 ms, distance = 14.919 mm, average velocity = 9.091 mm/sec
17-03-17 21:04:59.608 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.011254,
17-03-17 21:05:01.148 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:01.148 -07 000000541 INF: FPGA: Recv YRDPOS 122697
17-03-17 21:05:01.158 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:01.158 -07 000000012 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:01.188 -07 000000012 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:05:01.188 -07 000000012 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 21:05:01.188 -07 000000012 INF: Y Motor: Moved to 59.9106 after 4542 ms
17-03-17 21:05:01.188 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140380 mm (DAC = 30666)
17-03-17 21:05:01.188 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:01.198 -07 000000382 INF: FPGA: Recv ZSGSRD 31143
17-03-17 21:05:01.198 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:05:01.198 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:01.198 -07 000000433 INF: FPGA: Recv ZSGSRD 31142
17-03-17 21:05:01.208 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:01.208 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:01.208 -07 000000424 INF: FPGA: Recv ZSGSRD 31147
17-03-17 21:05:01.218 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:01.218 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:01.218 -07 000000012 INF: FPGA: Recv ZSGSRD 31138
17-03-17 21:05:01.228 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:01.228 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:01.228 -07 000000438 INF: FPGA: Recv ZSGSRD 31137
17-03-17 21:05:01.238 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:01.238 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:01.238 -07 000000433 INF: FPGA: Recv ZSGSRD 31146
17-03-17 21:05:01.248 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:01.248 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:01.248 -07 000000424 INF: FPGA: Recv ZSGSRD 31145
17-03-17 21:05:01.258 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:01.258 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:01.258 -07 000000482 INF: FPGA: Recv ZSGSRD 31148
17-03-17 21:05:01.268 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:01.268 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:01.268 -07 000000501 INF: FPGA: Recv ZSGSRD 31142
17-03-17 21:05:01.278 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:01.278 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:01.278 -07 000000431 INF: FPGA: Recv ZSGSRD 31144
17-03-17 21:05:01.288 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:01.288 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:01.288 -07 000000627 INF: FPGA: Recv ZPIEZORD 26883
17-03-17 21:05:01.298 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:01.298 -07 000000626 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.679 V. Piezo Error = -9.4 V.
17-03-17 21:05:01.298 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.4 um, Read 10 ADC samples: Avg = 31143 (-139.6 uncal um), Error = 0.8 uncal um, Median = 31144 (-139.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31137 (-139.6 uncal um), Max = 31148 (-139.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:05:01.298 -07 000000626 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31143, posNoise = 5, negNoise = 6
17-03-17 21:05:01.298 -07 000000626 INF: Z Motor: After move to -0.140380, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:01.298 -07 000000626 INF: Z Motor: Settle wait time = 4545 ms, measure time = 105 ms (allowed 150 ms), total time = 4650 ms
17-03-17 21:05:01.298 -07 000000626 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:05:01.348 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4703 ms
17-03-17 21:05:01.348 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:05:01.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:01.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:01.348 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:01.348 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:01.348 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:05:01.348 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:01.358 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:05:01.358 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:05:01.378 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-17 21:05:01.378 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:05:01.378 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:05:01.378 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:05:01.388 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 21:05:01.388 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 36 ms.
17-03-17 21:05:01.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:05:01.438 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:05:01.638 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:05:01.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:05:01.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:05:01.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-17 21:05:01.678 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:05:01.678 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 21:05:01.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 21:05:01.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:05:01.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:01.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:05:01.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 21:05:01.778 -07 000000012 INF: Image SNR check: start
17-03-17 21:05:01.778 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:05:01.778 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:05:01.788 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:05:01.788 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:05:01.788 -07 000000012 INF: Image SNR check: pass  [peak (Max-Min)=63.02]
17-03-17 21:05:01.788 -07 000000012 INF: Autofocus start
17-03-17 21:05:01.788 -07 000000012 INF: MeasureProfile start
17-03-17 21:05:01.808 -07 000000012 INF: MeasureProfile done
17-03-17 21:05:01.808 -07 000000012 INF: X=32  Z correction [um]=0.1299841
17-03-17 21:05:01.808 -07 000000012 INF: Autofocus finished
17-03-17 21:05:01.838 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:05:01.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:05:01.988 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:05:01.988 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:05:01.988 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.140392590741996. ----------
17-03-17 21:05:01.988 -07 000000610 INF: Cycle	46	Tile	1	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:05:01.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29207, sync = True, waitForSettling = True)
17-03-17 21:05:01.998 -07 000000610 INF: Z Motor: Moving to -0.133701 mm, started at -0.140393 mm, distance = 6.69 um
17-03-17 21:05:01.998 -07 000000610 INF: FPGA: Xmit ZDACW 29207\n [Z Motor]
17-03-17 21:05:01.998 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:05:02.008 -07 000000610 INF: FPGA: 'ZDACW 29207' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:05:02.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:02.008 -07 000000459 INF: FPGA: Recv ZDACR 29207
17-03-17 21:05:02.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:02.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:05:02.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:02.168 -07 000000459 INF: FPGA: Recv ZSGSRD 30103
17-03-17 21:05:02.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:02.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:02.178 -07 000000012 INF: FPGA: Recv ZSGSRD 30103
17-03-17 21:05:02.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:02.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:02.188 -07 000000618 INF: FPGA: Recv ZSGSRD 30100
17-03-17 21:05:02.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:02.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:02.198 -07 000000482 INF: FPGA: Recv ZSGSRD 30099
17-03-17 21:05:02.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:02.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:02.208 -07 000000424 INF: FPGA: Recv ZSGSRD 30105
17-03-17 21:05:02.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:02.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:02.218 -07 000000576 INF: FPGA: Recv ZSGSRD 30104
17-03-17 21:05:02.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:02.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:02.228 -07 000000382 INF: FPGA: Recv ZSGSRD 30103
17-03-17 21:05:02.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:02.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:02.238 -07 000000459 INF: FPGA: Recv ZSGSRD 30095
17-03-17 21:05:02.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:02.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:02.248 -07 000000627 INF: FPGA: Recv ZSGSRD 30104
17-03-17 21:05:02.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:02.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:02.258 -07 000000476 INF: FPGA: Recv ZSGSRD 30102
17-03-17 21:05:02.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:02.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:02.268 -07 000000618 INF: FPGA: Recv ZPIEZORD 25754
17-03-17 21:05:02.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:02.278 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.457 V. Piezo Error = -9.5 V.
17-03-17 21:05:02.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30102 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30103 (-132.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30095 (-132.9 uncal um), Max = 30105 (-132.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:05:02.278 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30102, posNoise = 3, negNoise = 7
17-03-17 21:05:02.278 -07 000000610 INF: Z Motor: After move to -0.133701, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:02.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:05:02.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:02.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:02.278 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:02.278 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:02.278 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:05:02.278 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:05:02.278 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:02.278 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:05:02.278 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:05:02.278 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:05:02.278 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:05:02.278 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:05:02.288 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:05:02.288 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:05:02.288 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:05:02.288 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:05:02.298 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 21:05:02.298 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:05:02.308 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:05:02.308 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:05:02.308 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:05:02.308 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 21:05:02.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 29384 150\n [Camera]
17-03-17 21:05:02.518 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:05:02.938 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:05:02.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:05:02.938 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:02.938 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:02.938 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:05:02.938 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:05:02.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:05:02.938 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:03.058 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:03.058 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:05:03.128 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29384 810
17-03-17 21:05:03.278 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:05:03.328 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:05:03.328 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:05:03.328 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:03.328 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:03.338 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:05:03.448 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:05:03.448 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:05:03.448 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:03.448 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:03.448 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-17 21:05:03.488 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:05:03.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:05:03.488 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:03.488 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:05:03.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:05:03.488 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:03.488 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:03.488 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 21:05:03.488 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:03.498 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:05:03.678 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:05:03.678 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:05:03.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 29384 150' command took 2 ms to send, 1354 ms to get response, and 1363 ms overall
17-03-17 21:05:03.678 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.134191
17-03-17 21:05:03.678 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13419 mm
17-03-17 21:05:03.678 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:05:03.678 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:05:03.678 -07 000000438 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 21:05:03.688 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:03.688 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 29314, sync = True, waitForSettling = False)
17-03-17 21:05:03.688 -07 000000476 INF: Z Motor: Moving to -0.134191 mm, started at -0.133705 mm, distance = -0.49 um
17-03-17 21:05:03.688 -07 000000618 INF: FPGA: Recv YRDPOS 122697
17-03-17 21:05:03.698 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:03.698 -07 000000438 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:03.698 -07 000000438 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:05:03.698 -07 000000438 INF: Y Motor: Moving 1331 steps2
17-03-17 21:05:03.698 -07 000000476 INF: FPGA: Xmit ZDACW 29314\n [Z Motor]
17-03-17 21:05:03.698 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 21:05:03.708 -07 000000476 INF: FPGA: 'ZDACW 29314' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:05:03.708 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:03.708 -07 000000424 INF: FPGA: Recv ZDACR 29314
17-03-17 21:05:03.718 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:03.718 -07 000000476 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 21:05:03.718 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:05:03.868 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:05:03.868 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:05:03.868 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:03.868 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:03.868 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:05:03.868 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:05:03.868 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:03.878 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:03.878 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:05:03.878 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:05:04.098 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:05:04.098 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 397 ms overall
17-03-17 21:05:04.128 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:04.128 -07 000000618 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:05:04.138 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:04.138 -07 000000438 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:04.138 -07 000000438 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:05:04.138 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.832 mm, average velocity = 2.090 mm/sec
17-03-17 21:05:04.968 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.999021,
17-03-17 21:05:05.088 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:05.088 -07 000000382 INF: FPGA: Recv YRDPOS 124382
17-03-17 21:05:05.098 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.098 -07 000000438 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:05.118 -07 000000438 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:05:05.118 -07 000000438 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:05:05.118 -07 000000438 INF: Y Motor: Moved to 60.7334 after 1435 ms (table move)
17-03-17 21:05:05.118 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134191 mm (DAC = 29314)
17-03-17 21:05:05.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.128 -07 000000433 INF: FPGA: Recv ZSGSRD 30181
17-03-17 21:05:05.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:05:05.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.128 -07 000000424 INF: FPGA: Recv ZSGSRD 30181
17-03-17 21:05:05.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.138 -07 000000482 INF: FPGA: Recv ZSGSRD 30178
17-03-17 21:05:05.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.148 -07 000000618 INF: FPGA: Recv ZSGSRD 30181
17-03-17 21:05:05.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.158 -07 000000431 INF: FPGA: Recv ZSGSRD 30179
17-03-17 21:05:05.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.168 -07 000000476 INF: FPGA: Recv ZSGSRD 30175
17-03-17 21:05:05.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.178 -07 000000482 INF: FPGA: Recv ZSGSRD 30168
17-03-17 21:05:05.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.188 -07 000000627 INF: FPGA: Recv ZSGSRD 30179
17-03-17 21:05:05.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.198 -07 000000431 INF: FPGA: Recv ZSGSRD 30179
17-03-17 21:05:05.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.208 -07 000000438 INF: FPGA: Recv ZSGSRD 30182
17-03-17 21:05:05.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:05.218 -07 000000424 INF: FPGA: Recv ZPIEZORD 25896
17-03-17 21:05:05.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.228 -07 000000610 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.473 V. Piezo Error = -9.4 V.
17-03-17 21:05:05.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.2 um, Read 10 ADC samples: Avg = 30178 (-133.4 uncal um), Error = 0.8 uncal um, Median = 30179 (-133.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30168 (-133.3 uncal um), Max = 30182 (-133.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:05:05.228 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30178, posNoise = 4, negNoise = 10
17-03-17 21:05:05.228 -07 000000610 INF: Z Motor: After move to -0.134191, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:05.228 -07 000000610 INF: Z Motor: Settle wait time = 1437 ms, measure time = 103 ms (allowed 150 ms), total time = 1540 ms
17-03-17 21:05:05.228 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:05:05.278 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 21:05:05.278 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:05:05.278 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.134193226025197. ----------
17-03-17 21:05:05.278 -07 000000610 INF: Cycle	46	Tile	2	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:05:05.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29137, sync = True, waitForSettling = True)
17-03-17 21:05:05.278 -07 000000610 INF: Z Motor: Moving to -0.133381 mm, started at -0.134193 mm, distance = 0.81 um
17-03-17 21:05:05.278 -07 000000610 INF: FPGA: Xmit ZDACW 29137\n [Z Motor]
17-03-17 21:05:05.278 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:05:05.288 -07 000000610 INF: FPGA: 'ZDACW 29137' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:05:05.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:05.288 -07 000000012 INF: FPGA: Recv ZDACR 29137
17-03-17 21:05:05.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:05:05.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.448 -07 000000459 INF: FPGA: Recv ZSGSRD 30055
17-03-17 21:05:05.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.468 -07 000000541 INF: FPGA: Recv ZSGSRD 30046
17-03-17 21:05:05.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:05:05.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.478 -07 000000012 INF: FPGA: Recv ZSGSRD 30050
17-03-17 21:05:05.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.488 -07 000000431 INF: FPGA: Recv ZSGSRD 30050
17-03-17 21:05:05.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.498 -07 000000438 INF: FPGA: Recv ZSGSRD 30046
17-03-17 21:05:05.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.508 -07 000000459 INF: FPGA: Recv ZSGSRD 30049
17-03-17 21:05:05.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:05:05.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.518 -07 000000618 INF: FPGA: Recv ZSGSRD 30051
17-03-17 21:05:05.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.528 -07 000000541 INF: FPGA: Recv ZSGSRD 30058
17-03-17 21:05:05.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.538 -07 000000429 INF: FPGA: Recv ZSGSRD 30051
17-03-17 21:05:05.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:05.548 -07 000000459 INF: FPGA: Recv ZSGSRD 30052
17-03-17 21:05:05.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:05.558 -07 000000438 INF: FPGA: Recv ZPIEZORD 25730
17-03-17 21:05:05.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:05.568 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.446 V. Piezo Error = -9.5 V.
17-03-17 21:05:05.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30051 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30050 (-132.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30046 (-132.6 uncal um), Max = 30058 (-132.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:05:05.568 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30051, posNoise = 7, negNoise = 5
17-03-17 21:05:05.568 -07 000000610 INF: Z Motor: After move to -0.133381, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:05.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-17 21:05:05.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:05.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:05.568 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:05.568 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:05.568 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:05:05.568 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:05.568 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:05:05.568 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:05:05.568 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:05:05.568 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:05:05.568 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:05:05.568 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:05:05.568 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:05:05.568 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:05:05.578 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:05:05.578 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:05:05.588 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:05:05.588 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:05:05.588 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:05:05.588 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:05:05.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 29314 150\n [Camera]
17-03-17 21:05:05.798 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 21:05:06.218 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:05:06.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:05:06.218 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:06.218 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:06.218 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 21:05:06.218 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:05:06.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:05:06.218 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:06.218 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:06.218 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2348678928, 0x0, 418435064) start.
17-03-17 21:05:06.408 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29314 810
17-03-17 21:05:06.558 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:05:06.618 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:05:06.618 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:05:06.618 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:06.618 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2348678928, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:05:06.618 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:05:06.618 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:06.618 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:06.628 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:05:06.628 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:06.628 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 21:05:06.768 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:05:06.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:05:06.768 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:06.768 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:06.768 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1059065904, 0x0, 391868352) start.
17-03-17 21:05:06.768 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:05:06.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:05:06.768 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:06.888 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:05:06.888 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:05:06.888 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:06.888 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:05:06.958 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1360
17-03-17 21:05:06.958 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:05:06.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 29314 150' command took 2 ms to send, 1357 ms to get response, and 1367 ms overall
17-03-17 21:05:06.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:05:06.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.133377351083194. ------
17-03-17 21:05:06.968 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:05:06.968 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13978 mm
17-03-17 21:05:06.968 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:05:06.968 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:05:06.968 -07 000000627 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 21:05:06.968 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30535, sync = True, waitForSettling = False)
17-03-17 21:05:06.968 -07 000000438 INF: Z Motor: Moving to -0.139780 mm, started at -0.133377 mm, distance = -6.40 um
17-03-17 21:05:06.968 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:05:06.978 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:05:06.978 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:06.978 -07 000000459 INF: FPGA: Recv YRDPOS 124382
17-03-17 21:05:06.988 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:05:06.988 -07 000000627 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:06.988 -07 000000627 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:05:06.988 -07 000000627 INF: Y Motor: Moving 1343 steps-20
17-03-17 21:05:06.988 -07 000000438 INF: FPGA: Xmit ZDACW 30535\n [Z Motor]
17-03-17 21:05:06.988 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:05:06.998 -07 000000438 INF: FPGA: 'ZDACW 30535' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:05:06.998 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:05:07.008 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:05:07.018 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:07.018 -07 000000431 INF: FPGA: Recv ZDACR 30535
17-03-17 21:05:07.028 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:05:07.028 -07 000000438 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 21:05:07.158 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1059065904, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:05:07.158 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:05:07.168 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:07.168 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:07.168 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:05:07.198 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:05:07.198 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 21:05:07.278 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 21:05:07.278 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:05:07.278 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:07.288 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:07.288 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-17 21:05:07.378 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 21:05:07.378 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:05:07.428 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:07.438 -07 000000459 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:05:07.438 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:05:07.438 -07 000000627 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:07.438 -07 000000627 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:05:07.438 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 21:05:08.388 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:08.388 -07 000000476 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:05:08.398 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:08.398 -07 000000627 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:08.418 -07 000000627 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:05:08.418 -07 000000627 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:05:08.418 -07 000000627 INF: Y Motor: Moved to 61.5640 after 1447 ms (table move)
17-03-17 21:05:08.418 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139780 mm (DAC = 30535)
17-03-17 21:05:08.418 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:08.418 -07 000000626 INF: FPGA: Recv ZSGSRD 31047
17-03-17 21:05:08.428 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:05:08.428 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:08.428 -07 000000576 INF: FPGA: Recv ZSGSRD 31053
17-03-17 21:05:08.438 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:08.438 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:08.438 -07 000000618 INF: FPGA: Recv ZSGSRD 31059
17-03-17 21:05:08.448 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:08.448 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:08.448 -07 000000382 INF: FPGA: Recv ZSGSRD 31053
17-03-17 21:05:08.458 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:08.458 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:08.458 -07 000000482 INF: FPGA: Recv ZSGSRD 31041
17-03-17 21:05:08.468 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:08.468 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:08.468 -07 000000576 INF: FPGA: Recv ZSGSRD 31052
17-03-17 21:05:08.478 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:08.478 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:08.478 -07 000000438 INF: FPGA: Recv ZSGSRD 31047
17-03-17 21:05:08.488 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:08.488 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:08.488 -07 000000541 INF: FPGA: Recv ZSGSRD 31044
17-03-17 21:05:08.498 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:08.498 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:08.498 -07 000000482 INF: FPGA: Recv ZSGSRD 31045
17-03-17 21:05:08.508 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:08.508 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:08.508 -07 000000576 INF: FPGA: Recv ZSGSRD 31052
17-03-17 21:05:08.518 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:08.518 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:08.518 -07 000000438 INF: FPGA: Recv ZPIEZORD 27066
17-03-17 21:05:08.528 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:08.528 -07 000000012 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.659 V. Piezo Error = -8.8 V.
17-03-17 21:05:08.528 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.8 um, Read 10 ADC samples: Avg = 31049 (-139.0 uncal um), Error = 0.8 uncal um, Median = 31050 (-139.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 31041 (-138.9 uncal um), Max = 31059 (-139.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:05:08.528 -07 000000012 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31049, posNoise = 10, negNoise = 8
17-03-17 21:05:08.528 -07 000000012 INF: Z Motor: After move to -0.139780, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:08.528 -07 000000012 INF: Z Motor: Settle wait time = 1450 ms, measure time = 104 ms (allowed 150 ms), total time = 1554 ms
17-03-17 21:05:08.528 -07 000000012 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:05:08.578 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 21:05:08.578 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:05:08.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:08.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:08.578 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:08.578 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:08.578 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:05:08.578 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:08.578 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:05:08.578 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:05:08.588 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:05:08.588 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:05:08.598 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:05:08.598 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:05:08.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:05:08.648 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:05:08.848 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:05:08.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:05:08.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:05:08.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:05:08.888 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:05:08.888 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 21:05:08.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 21:05:08.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:05:08.978 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:08.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:05:08.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:05:08.988 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:05:08.988 -07 000000429 INF: Autofocus start
17-03-17 21:05:08.988 -07 000000429 INF: MeasureProfile start
17-03-17 21:05:08.988 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:05:08.998 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:05:08.998 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:05:08.998 -07 000000429 INF: MeasureProfile done
17-03-17 21:05:08.998 -07 000000429 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 21:05:08.998 -07 000000429 INF: Autofocus finished
17-03-17 21:05:09.198 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:05:09.198 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:05:09.198 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139788714800671. ----------
17-03-17 21:05:09.198 -07 000000610 INF: Cycle	46	Tile	3	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:05:09.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29030, sync = True, waitForSettling = True)
17-03-17 21:05:09.208 -07 000000610 INF: Z Motor: Moving to -0.132891 mm, started at -0.139789 mm, distance = 6.90 um
17-03-17 21:05:09.208 -07 000000610 INF: FPGA: Xmit ZDACW 29030\n [Z Motor]
17-03-17 21:05:09.208 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:05:09.218 -07 000000610 INF: FPGA: 'ZDACW 29030' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:09.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:09.218 -07 000000424 INF: FPGA: Recv ZDACR 29030
17-03-17 21:05:09.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:09.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:05:09.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:09.378 -07 000000433 INF: FPGA: Recv ZSGSRD 29977
17-03-17 21:05:09.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:09.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:09.388 -07 000000012 INF: FPGA: Recv ZSGSRD 29973
17-03-17 21:05:09.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:09.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:09.398 -07 000000541 INF: FPGA: Recv ZSGSRD 29976
17-03-17 21:05:09.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:09.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:09.408 -07 000000424 INF: FPGA: Recv ZSGSRD 29974
17-03-17 21:05:09.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:09.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:09.418 -07 000000433 INF: FPGA: Recv ZSGSRD 29974
17-03-17 21:05:09.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:09.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:09.428 -07 000000618 INF: FPGA: Recv ZSGSRD 29980
17-03-17 21:05:09.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:09.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:09.438 -07 000000541 INF: FPGA: Recv ZSGSRD 29974
17-03-17 21:05:09.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:09.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:09.448 -07 000000433 INF: FPGA: Recv ZSGSRD 29977
17-03-17 21:05:09.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:09.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:09.458 -07 000000431 INF: FPGA: Recv ZSGSRD 29974
17-03-17 21:05:09.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:09.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:09.468 -07 000000627 INF: FPGA: Recv ZSGSRD 29979
17-03-17 21:05:09.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:09.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:09.478 -07 000000541 INF: FPGA: Recv ZPIEZORD 25645
17-03-17 21:05:09.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:09.488 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.430 V. Piezo Error = -9.5 V.
17-03-17 21:05:09.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29976 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29975 (-132.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29973 (-132.1 uncal um), Max = 29980 (-132.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:05:09.488 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29976, posNoise = 4, negNoise = 3
17-03-17 21:05:09.488 -07 000000610 INF: Z Motor: After move to -0.132891, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:09.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:05:09.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:09.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:09.488 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:09.488 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:09.488 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:05:09.488 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:05:09.488 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:05:09.488 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:09.488 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:05:09.488 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:05:09.488 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:05:09.488 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:05:09.488 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:05:09.488 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:05:09.498 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:05:09.498 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:05:09.508 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:05:09.508 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:05:09.508 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:05:09.508 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:05:09.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 29207 150\n [Camera]
17-03-17 21:05:09.708 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:05:10.138 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:05:10.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:05:10.138 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:10.138 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:05:10.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:05:10.138 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:10.138 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:10.138 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:05:10.138 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:10.148 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:05:10.328 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.994908,
17-03-17 21:05:10.328 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29207 810
17-03-17 21:05:10.478 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:05:10.518 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 21:05:10.518 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 21:05:10.518 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:10.518 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:05:10.518 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:05:10.518 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:10.518 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:10.518 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:05:10.518 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:10.528 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:05:10.688 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:05:10.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:05:10.688 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:10.688 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:10.688 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 21:05:10.688 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:05:10.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:05:10.688 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:10.688 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:10.688 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 21:05:10.878 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-17 21:05:10.878 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:05:10.878 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 29207 150' command took 2 ms to send, 1353 ms to get response, and 1363 ms overall
17-03-17 21:05:10.878 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.133233
17-03-17 21:05:10.878 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13323 mm
17-03-17 21:05:10.878 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:05:10.878 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:05:10.878 -07 000000433 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 21:05:10.878 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:10.878 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29105, sync = True, waitForSettling = False)
17-03-17 21:05:10.878 -07 000000541 INF: Z Motor: Moving to -0.133234 mm, started at -0.132896 mm, distance = -0.34 um
17-03-17 21:05:10.888 -07 000000541 INF: FPGA: Xmit ZDACW 29105\n [Z Motor]
17-03-17 21:05:10.888 -07 000000576 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:05:10.888 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:05:10.888 -07 000000433 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:10.888 -07 000000433 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:05:10.888 -07 000000433 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:05:10.888 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:05:10.898 -07 000000541 INF: FPGA: 'ZDACW 29105' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:05:10.898 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:10.898 -07 000000429 INF: FPGA: Recv ZDACR 29105
17-03-17 21:05:10.908 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:10.908 -07 000000541 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 21:05:10.908 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:05:11.068 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 21:05:11.068 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:05:11.068 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:11.078 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 21:05:11.078 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:05:11.078 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:11.078 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:11.078 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:05:11.078 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:05:11.088 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:05:11.278 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 21:05:11.278 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 397 ms overall
17-03-17 21:05:11.338 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:11.338 -07 000000438 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:05:11.348 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:11.348 -07 000000433 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:11.348 -07 000000433 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 21:05:11.348 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.107 mm/sec
17-03-17 21:05:11.838 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:05:11.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:05:12.298 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:12.298 -07 000000576 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:05:12.308 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:12.308 -07 000000433 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:12.328 -07 000000433 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:05:12.328 -07 000000433 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:05:12.328 -07 000000433 INF: Y Motor: Moved to 62.3955 after 1445 ms (table move)
17-03-17 21:05:12.328 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133234 mm (DAC = 29105)
17-03-17 21:05:12.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.328 -07 000000431 INF: FPGA: Recv ZSGSRD 30036
17-03-17 21:05:12.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:05:12.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.338 -07 000000482 INF: FPGA: Recv ZSGSRD 30028
17-03-17 21:05:12.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.348 -07 000000576 INF: FPGA: Recv ZSGSRD 30029
17-03-17 21:05:12.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.358 -07 000000626 INF: FPGA: Recv ZSGSRD 30024
17-03-17 21:05:12.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.368 -07 000000431 INF: FPGA: Recv ZSGSRD 30029
17-03-17 21:05:12.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.378 -07 000000541 INF: FPGA: Recv ZSGSRD 30025
17-03-17 21:05:12.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.388 -07 000000576 INF: FPGA: Recv ZSGSRD 30027
17-03-17 21:05:12.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.398 -07 000000424 INF: FPGA: Recv ZSGSRD 30034
17-03-17 21:05:12.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.408 -07 000000431 INF: FPGA: Recv ZSGSRD 30034
17-03-17 21:05:12.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.418 -07 000000618 INF: FPGA: Recv ZSGSRD 30035
17-03-17 21:05:12.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:12.428 -07 000000438 INF: FPGA: Recv ZPIEZORD 25758
17-03-17 21:05:12.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.438 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.4 V.
17-03-17 21:05:12.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30030 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30029 (-132.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30024 (-132.4 uncal um), Max = 30036 (-132.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:05:12.438 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30030, posNoise = 6, negNoise = 6
17-03-17 21:05:12.438 -07 000000610 INF: Z Motor: After move to -0.133234, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:12.438 -07 000000610 INF: Z Motor: Settle wait time = 1446 ms, measure time = 106 ms (allowed 150 ms), total time = 1552 ms
17-03-17 21:05:12.438 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 21:05:12.488 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 21:05:12.488 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:05:12.488 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.133242442628217. ----------
17-03-17 21:05:12.488 -07 000000610 INF: Cycle	46	Tile	4	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:05:12.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28928, sync = True, waitForSettling = True)
17-03-17 21:05:12.488 -07 000000610 INF: Z Motor: Moving to -0.132424 mm, started at -0.133242 mm, distance = 0.82 um
17-03-17 21:05:12.488 -07 000000610 INF: FPGA: Xmit ZDACW 28928\n [Z Motor]
17-03-17 21:05:12.488 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:05:12.498 -07 000000610 INF: FPGA: 'ZDACW 28928' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:05:12.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:12.498 -07 000000618 INF: FPGA: Recv ZDACR 28928
17-03-17 21:05:12.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:05:12.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.658 -07 000000541 INF: FPGA: Recv ZSGSRD 29906
17-03-17 21:05:12.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:12.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.668 -07 000000459 INF: FPGA: Recv ZSGSRD 29902
17-03-17 21:05:12.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.678 -07 000000576 INF: FPGA: Recv ZSGSRD 29899
17-03-17 21:05:12.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.688 -07 000000438 INF: FPGA: Recv ZSGSRD 29906
17-03-17 21:05:12.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.698 -07 000000433 INF: FPGA: Recv ZSGSRD 29904
17-03-17 21:05:12.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.708 -07 000000424 INF: FPGA: Recv ZSGSRD 29904
17-03-17 21:05:12.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.718 -07 000000482 INF: FPGA: Recv ZSGSRD 29903
17-03-17 21:05:12.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.728 -07 000000626 INF: FPGA: Recv ZSGSRD 29910
17-03-17 21:05:12.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.738 -07 000000382 INF: FPGA: Recv ZSGSRD 29908
17-03-17 21:05:12.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:12.748 -07 000000429 INF: FPGA: Recv ZSGSRD 29901
17-03-17 21:05:12.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:12.758 -07 000000482 INF: FPGA: Recv ZPIEZORD 25594
17-03-17 21:05:12.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:12.768 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.414 V. Piezo Error = -9.5 V.
17-03-17 21:05:12.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29904 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29904 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29899 (-131.6 uncal um), Max = 29910 (-131.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:05:12.768 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29904, posNoise = 6, negNoise = 5
17-03-17 21:05:12.768 -07 000000610 INF: Z Motor: After move to -0.132424, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:12.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:05:12.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:12.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:12.768 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:12.768 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:12.768 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:05:12.768 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:05:12.768 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:12.768 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:05:12.768 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:05:12.768 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:05:12.768 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:05:12.768 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:05:12.778 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:05:12.778 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:05:12.778 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:05:12.778 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:05:12.788 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:05:12.788 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:05:12.788 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:05:12.788 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:05:12.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 29105 150\n [Camera]
17-03-17 21:05:12.998 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:05:13.418 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:05:13.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:05:13.418 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:13.418 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:05:13.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:05:13.418 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:13.428 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:13.428 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:05:13.428 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:13.428 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:05:13.608 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29105 810
17-03-17 21:05:13.758 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 962
17-03-17 21:05:13.798 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:05:13.798 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:05:13.798 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:13.798 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 21:05:13.798 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 21:05:13.798 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:13.808 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:13.808 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:05:13.808 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:05:13.808 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:05:13.968 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:05:13.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:05:13.968 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:13.968 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:13.968 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 21:05:13.968 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:05:13.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:05:13.968 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:13.968 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:13.968 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 21:05:14.158 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:05:14.158 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:05:14.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 29105 150' command took 2 ms to send, 1353 ms to get response, and 1363 ms overall
17-03-17 21:05:14.158 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.133090
17-03-17 21:05:14.158 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13309 mm
17-03-17 21:05:14.158 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:05:14.158 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:05:14.278 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29073, sync = True, waitForSettling = False)
17-03-17 21:05:14.278 -07 000000438 INF: Z Motor: Moving to -0.133088 mm, started at -0.132433 mm, distance = -0.65 um
17-03-17 21:05:14.278 -07 000000438 INF: FPGA: Xmit ZDACW 29073\n [Z Motor]
17-03-17 21:05:14.278 -07 000000541 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 21:05:14.278 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 21:05:14.288 -07 000000438 INF: FPGA: 'ZDACW 29073' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:05:14.288 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:14.288 -07 000000627 INF: FPGA: Recv ZDACR 29073
17-03-17 21:05:14.298 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:14.298 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:14.298 -07 000000438 INF: Z Motor: MoveAbsStepped took 15 ms (did NOT wait for settling yet))
17-03-17 21:05:14.298 -07 000000429 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:05:14.308 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:05:14.308 -07 000000541 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:14.308 -07 000000541 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:05:14.308 -07 000000541 INF: Y Motor: Moving 1339 steps-15
17-03-17 21:05:14.308 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:05:14.358 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 21:05:14.358 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:05:14.358 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:14.358 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:05:14.358 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:05:14.358 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:14.368 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:05:14.368 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:05:14.368 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:05:14.378 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 21:05:14.678 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:05:14.678 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-17 21:05:14.718 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:14.728 -07 000000424 INF: FPGA: Recv YRDPOS 129483
17-03-17 21:05:14.728 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:05:14.728 -07 000000541 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:14.728 -07 000000541 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 21:05:14.728 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.837 mm, average velocity = 2.215 mm/sec
17-03-17 21:05:15.688 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:15.688 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.005817,
17-03-17 21:05:15.688 -07 000000576 INF: FPGA: Recv YRDPOS 129483
17-03-17 21:05:15.698 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:05:15.698 -07 000000541 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:15.718 -07 000000541 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:05:15.718 -07 000000541 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:05:15.718 -07 000000541 INF: Y Motor: Moved to 63.2241 after 1440 ms (table move)
17-03-17 21:05:15.718 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133088 mm (DAC = 29073)
17-03-17 21:05:15.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:15.738 -07 000000429 INF: FPGA: Recv ZSGSRD 30009
17-03-17 21:05:15.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:05:15.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:15.748 -07 000000626 INF: FPGA: Recv ZSGSRD 30011
17-03-17 21:05:15.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:15.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:15.758 -07 000000424 INF: FPGA: Recv ZSGSRD 30006
17-03-17 21:05:15.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:15.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:15.768 -07 000000541 INF: FPGA: Recv ZSGSRD 30004
17-03-17 21:05:15.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:15.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:15.778 -07 000000482 INF: FPGA: Recv ZSGSRD 30000
17-03-17 21:05:15.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:15.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:15.788 -07 000000501 INF: FPGA: Recv ZSGSRD 30004
17-03-17 21:05:15.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:15.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:15.798 -07 000000012 INF: FPGA: Recv ZSGSRD 30006
17-03-17 21:05:15.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:15.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:15.808 -07 000000476 INF: FPGA: Recv ZSGSRD 30007
17-03-17 21:05:15.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:15.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:15.818 -07 000000482 INF: FPGA: Recv ZSGSRD 30010
17-03-17 21:05:15.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:15.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:15.838 -07 000000476 INF: FPGA: Recv ZSGSRD 30005
17-03-17 21:05:15.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:05:15.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:15.848 -07 000000382 INF: FPGA: Recv ZPIEZORD 25772
17-03-17 21:05:15.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:15.858 -07 000000610 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.436 V. Piezo Error = -9.3 V.
17-03-17 21:05:15.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30006 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30006 (-132.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30000 (-132.3 uncal um), Max = 30011 (-132.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:05:15.858 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30006, posNoise = 5, negNoise = 6
17-03-17 21:05:15.858 -07 000000610 INF: Z Motor: After move to -0.133088, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:15.858 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 132 ms (allowed 150 ms), total time = 1575 ms
17-03-17 21:05:15.858 -07 000000610 INF: Z Motor: Waiting extra 18 ms after reading position to reach expected total of 150 ms
17-03-17 21:05:15.878 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1714 ms
17-03-17 21:05:15.878 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:05:15.878 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.133088261536814. ----------
17-03-17 21:05:15.878 -07 000000610 INF: Cycle	46	Tile	5	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:05:15.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28897, sync = True, waitForSettling = True)
17-03-17 21:05:15.878 -07 000000610 INF: Z Motor: Moving to -0.132282 mm, started at -0.133088 mm, distance = 0.81 um
17-03-17 21:05:15.878 -07 000000610 INF: FPGA: Xmit ZDACW 28897\n [Z Motor]
17-03-17 21:05:15.878 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:05:15.888 -07 000000610 INF: FPGA: 'ZDACW 28897' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:05:15.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:15.888 -07 000000431 INF: FPGA: Recv ZDACR 28897
17-03-17 21:05:15.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:15.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:05:16.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:16.048 -07 000000459 INF: FPGA: Recv ZSGSRD 29887
17-03-17 21:05:16.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:16.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:16.058 -07 000000382 INF: FPGA: Recv ZSGSRD 29884
17-03-17 21:05:16.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:16.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:16.068 -07 000000429 INF: FPGA: Recv ZSGSRD 29880
17-03-17 21:05:16.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:16.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:16.078 -07 000000627 INF: FPGA: Recv ZSGSRD 29876
17-03-17 21:05:16.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:16.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:16.088 -07 000000541 INF: FPGA: Recv ZSGSRD 29880
17-03-17 21:05:16.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:16.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:16.098 -07 000000382 INF: FPGA: Recv ZSGSRD 29882
17-03-17 21:05:16.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:16.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:16.108 -07 000000618 INF: FPGA: Recv ZSGSRD 29878
17-03-17 21:05:16.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:16.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:16.118 -07 000000627 INF: FPGA: Recv ZSGSRD 29884
17-03-17 21:05:16.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:16.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:16.128 -07 000000012 INF: FPGA: Recv ZSGSRD 29884
17-03-17 21:05:16.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:16.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:16.148 -07 000000541 INF: FPGA: Recv ZSGSRD 29880
17-03-17 21:05:16.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:05:16.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:16.158 -07 000000476 INF: FPGA: Recv ZPIEZORD 25602
17-03-17 21:05:16.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:16.168 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.409 V. Piezo Error = -9.4 V.
17-03-17 21:05:16.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29882 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29881 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29876 (-131.5 uncal um), Max = 29887 (-131.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:05:16.168 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29882, posNoise = 5, negNoise = 6
17-03-17 21:05:16.168 -07 000000610 INF: Z Motor: After move to -0.132282, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:16.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 21:05:16.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:16.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:16.168 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:16.168 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:16.168 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:05:16.168 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:16.168 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:05:16.168 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:05:16.168 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:05:16.168 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:05:16.168 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:05:16.168 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:05:16.178 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:05:16.178 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:05:16.178 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:05:16.178 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:05:16.188 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:05:16.188 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:05:16.188 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 21:05:16.188 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:05:16.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 29073 150\n [Camera]
17-03-17 21:05:16.408 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:05:16.828 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:05:16.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:05:16.828 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:16.828 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:05:16.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:05:16.838 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:16.838 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:05:16.838 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:16.838 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:16.838 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:05:16.848 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:05:16.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:05:17.018 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29073 810
17-03-17 21:05:17.168 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:05:17.218 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:05:17.218 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:05:17.218 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:17.218 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:05:17.218 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:05:17.218 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:17.218 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:17.218 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:17.218 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:05:17.228 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:05:17.378 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:05:17.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:05:17.378 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:17.378 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:17.378 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1059065904, 0x0, 391868352) start.
17-03-17 21:05:17.378 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:05:17.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:05:17.378 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:17.378 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:17.378 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1094488168, 0x0, 418435064) start.
17-03-17 21:05:17.568 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:05:17.568 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:05:17.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 29073 150' command took 2 ms to send, 1353 ms to get response, and 1372 ms overall
17-03-17 21:05:17.568 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.132794
17-03-17 21:05:17.568 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13279 mm
17-03-17 21:05:17.568 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:05:17.568 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:05:17.568 -07 000000501 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 21:05:17.568 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:17.568 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29009, sync = True, waitForSettling = False)
17-03-17 21:05:17.568 -07 000000541 INF: Z Motor: Moving to -0.132795 mm, started at -0.132292 mm, distance = -0.50 um
17-03-17 21:05:17.578 -07 000000541 INF: FPGA: Xmit ZDACW 29009\n [Z Motor]
17-03-17 21:05:17.578 -07 000000438 INF: FPGA: Recv YRDPOS 129484
17-03-17 21:05:17.578 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 21:05:17.578 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:05:17.578 -07 000000501 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:17.578 -07 000000501 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:05:17.578 -07 000000501 INF: Y Motor: Moving 1341 steps-17
17-03-17 21:05:17.588 -07 000000541 INF: FPGA: 'ZDACW 29009' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:17.588 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:05:17.598 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:17.598 -07 000000433 INF: FPGA: Recv ZDACR 29009
17-03-17 21:05:17.608 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:05:17.608 -07 000000541 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 21:05:17.758 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1059065904, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:05:17.758 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:05:17.758 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:17.768 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:17.768 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:05:17.768 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1094488168, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 21:05:17.768 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:05:17.768 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:17.768 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:17.778 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:05:17.958 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 21:05:17.958 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 21:05:17.998 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:18.008 -07 000000541 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:05:18.008 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:05:18.008 -07 000000501 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:18.008 -07 000000501 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 21:05:18.008 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.838 mm, average velocity = 2.212 mm/sec
17-03-17 21:05:18.958 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:18.958 -07 000000476 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:05:18.968 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:18.968 -07 000000501 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:18.988 -07 000000501 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:05:18.988 -07 000000501 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:05:18.988 -07 000000501 INF: Y Motor: Moved to 64.0571 after 1411 ms (table move)
17-03-17 21:05:18.988 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132795 mm (DAC = 29009)
17-03-17 21:05:18.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:18.988 -07 000000438 INF: FPGA: Recv ZSGSRD 29968
17-03-17 21:05:18.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:05:18.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:18.998 -07 000000576 INF: FPGA: Recv ZSGSRD 29961
17-03-17 21:05:19.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:19.008 -07 000000012 INF: FPGA: Recv ZSGSRD 29958
17-03-17 21:05:19.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:19.018 -07 000000501 INF: FPGA: Recv ZSGSRD 29965
17-03-17 21:05:19.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:19.028 -07 000000438 INF: FPGA: Recv ZSGSRD 29969
17-03-17 21:05:19.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:19.038 -07 000000476 INF: FPGA: Recv ZSGSRD 29961
17-03-17 21:05:19.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:19.048 -07 000000012 INF: FPGA: Recv ZSGSRD 29955
17-03-17 21:05:19.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:19.058 -07 000000482 INF: FPGA: Recv ZSGSRD 29958
17-03-17 21:05:19.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:19.068 -07 000000459 INF: FPGA: Recv ZSGSRD 29961
17-03-17 21:05:19.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:19.078 -07 000000576 INF: FPGA: Recv ZSGSRD 29965
17-03-17 21:05:19.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:19.088 -07 000000438 INF: FPGA: Recv ZPIEZORD 25754
17-03-17 21:05:19.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.098 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.426 V. Piezo Error = -9.2 V.
17-03-17 21:05:19.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29962 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29961 (-132.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29955 (-132.0 uncal um), Max = 29969 (-132.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:05:19.098 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29962, posNoise = 7, negNoise = 7
17-03-17 21:05:19.098 -07 000000610 INF: Z Motor: After move to -0.132795, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:19.098 -07 000000610 INF: Z Motor: Settle wait time = 1414 ms, measure time = 106 ms (allowed 150 ms), total time = 1520 ms
17-03-17 21:05:19.098 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 21:05:19.148 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 21:05:19.148 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:05:19.148 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.132805596202577. ----------
17-03-17 21:05:19.148 -07 000000610 INF: Cycle	46	Tile	6	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:05:19.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28832, sync = True, waitForSettling = True)
17-03-17 21:05:19.148 -07 000000610 INF: Z Motor: Moving to -0.131984 mm, started at -0.132806 mm, distance = 0.82 um
17-03-17 21:05:19.148 -07 000000610 INF: FPGA: Xmit ZDACW 28832\n [Z Motor]
17-03-17 21:05:19.148 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:05:19.158 -07 000000610 INF: FPGA: 'ZDACW 28832' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:05:19.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:19.158 -07 000000626 INF: FPGA: Recv ZDACR 28832
17-03-17 21:05:19.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:05:19.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:19.318 -07 000000482 INF: FPGA: Recv ZSGSRD 29838
17-03-17 21:05:19.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:19.328 -07 000000438 INF: FPGA: Recv ZSGSRD 29837
17-03-17 21:05:19.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:19.338 -07 000000459 INF: FPGA: Recv ZSGSRD 29837
17-03-17 21:05:19.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:19.348 -07 000000476 INF: FPGA: Recv ZSGSRD 29832
17-03-17 21:05:19.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:19.358 -07 000000627 INF: FPGA: Recv ZSGSRD 29837
17-03-17 21:05:19.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:19.368 -07 000000482 INF: FPGA: Recv ZSGSRD 29832
17-03-17 21:05:19.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:19.378 -07 000000429 INF: FPGA: Recv ZSGSRD 29830
17-03-17 21:05:19.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:19.388 -07 000000626 INF: FPGA: Recv ZSGSRD 29838
17-03-17 21:05:19.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:19.398 -07 000000482 INF: FPGA: Recv ZSGSRD 29835
17-03-17 21:05:19.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:19.408 -07 000000618 INF: FPGA: Recv ZSGSRD 29836
17-03-17 21:05:19.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:19.418 -07 000000459 INF: FPGA: Recv ZPIEZORD 25536
17-03-17 21:05:19.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:19.428 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.399 V. Piezo Error = -9.4 V.
17-03-17 21:05:19.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29835 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29836 (-131.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29830 (-131.2 uncal um), Max = 29838 (-131.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:05:19.428 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29835, posNoise = 3, negNoise = 5
17-03-17 21:05:19.428 -07 000000610 INF: Z Motor: After move to -0.131984, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:19.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:05:19.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:19.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:19.428 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:19.428 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:19.428 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:05:19.428 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:19.428 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:05:19.428 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:05:19.428 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:05:19.428 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:05:19.428 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:05:19.428 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:05:19.438 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:05:19.438 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:05:19.438 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:05:19.438 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:05:19.448 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:05:19.448 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:05:19.448 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:05:19.448 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 21:05:19.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 29009 150\n [Camera]
17-03-17 21:05:19.658 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:05:20.078 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:05:20.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:05:20.078 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:20.078 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:20.078 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1129910432, 0x0, 391868352) start.
17-03-17 21:05:20.088 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:05:20.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:05:20.088 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:20.088 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:20.088 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:05:20.278 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29009 810
17-03-17 21:05:20.428 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:05:20.468 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1129910432, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:05:20.468 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:05:20.468 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:20.478 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:20.478 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:05:20.478 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:05:20.478 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:05:20.478 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:20.478 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:05:20.488 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:05:20.628 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:05:20.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:05:20.628 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:20.628 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:20.628 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:05:20.628 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:05:20.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:05:20.628 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:20.628 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:20.628 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:05:20.818 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:05:20.818 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:05:20.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 29009 150' command took 2 ms to send, 1357 ms to get response, and 1367 ms overall
17-03-17 21:05:20.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:05:20.828 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131989721260573. ------
17-03-17 21:05:20.828 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:05:20.828 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13862 mm
17-03-17 21:05:20.828 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:05:20.828 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:05:20.828 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:05:20.828 -07 000000618 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 21:05:20.828 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30282, sync = True, waitForSettling = False)
17-03-17 21:05:20.828 -07 000000576 INF: Z Motor: Moving to -0.138622 mm, started at -0.131990 mm, distance = -6.63 um
17-03-17 21:05:20.838 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:05:20.838 -07 000000576 INF: FPGA: Xmit ZDACW 30282\n [Z Motor]
17-03-17 21:05:20.838 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:05:20.848 -07 000000576 INF: FPGA: 'ZDACW 30282' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:05:20.848 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:05:20.858 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:20.858 -07 000000501 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:05:20.868 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:20.868 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 21:05:20.868 -07 000000618 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:20.868 -07 000000618 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:05:20.868 -07 000000618 INF: Y Motor: Moving 1337 steps-12
17-03-17 21:05:20.868 -07 000000438 INF: FPGA: Recv ZDACR 30282
17-03-17 21:05:20.878 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:05:20.878 -07 000000576 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 21:05:20.878 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:05:21.008 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:05:21.008 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:05:21.018 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:21.018 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:05:21.018 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:05:21.018 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:21.018 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:21.018 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:05:21.018 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:05:21.028 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:05:21.048 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:05:21.048 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 215 ms overall
17-03-17 21:05:21.058 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.994908,
17-03-17 21:05:21.248 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 21:05:21.248 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:05:21.288 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:21.288 -07 000000459 INF: FPGA: Recv YRDPOS 132872
17-03-17 21:05:21.298 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:05:21.298 -07 000000618 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:21.298 -07 000000618 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:05:21.298 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.835 mm, average velocity = 2.159 mm/sec
17-03-17 21:05:21.848 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:05:21.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:05:22.248 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:22.248 -07 000000433 INF: FPGA: Recv YRDPOS 132872
17-03-17 21:05:22.258 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:22.258 -07 000000618 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:22.278 -07 000000618 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:05:22.278 -07 000000618 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:05:22.278 -07 000000618 INF: Y Motor: Moved to 64.8789 after 1447 ms (table move)
17-03-17 21:05:22.278 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138622 mm (DAC = 30282)
17-03-17 21:05:22.278 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:22.288 -07 000000433 INF: FPGA: Recv ZSGSRD 30874
17-03-17 21:05:22.288 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:05:22.288 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:22.288 -07 000000429 INF: FPGA: Recv ZSGSRD 30864
17-03-17 21:05:22.298 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:22.298 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:22.298 -07 000000438 INF: FPGA: Recv ZSGSRD 30858
17-03-17 21:05:22.308 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:22.308 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:22.308 -07 000000431 INF: FPGA: Recv ZSGSRD 30875
17-03-17 21:05:22.318 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:22.318 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:22.318 -07 000000429 INF: FPGA: Recv ZSGSRD 30860
17-03-17 21:05:22.328 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:22.328 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:22.328 -07 000000626 INF: FPGA: Recv ZSGSRD 30878
17-03-17 21:05:22.338 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:22.338 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:22.338 -07 000000438 INF: FPGA: Recv ZSGSRD 30871
17-03-17 21:05:22.348 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:22.348 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:22.348 -07 000000482 INF: FPGA: Recv ZSGSRD 30861
17-03-17 21:05:22.358 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:22.358 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:22.358 -07 000000429 INF: FPGA: Recv ZSGSRD 30863
17-03-17 21:05:22.368 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:22.368 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:22.368 -07 000000501 INF: FPGA: Recv ZSGSRD 30868
17-03-17 21:05:22.378 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:22.378 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:22.378 -07 000000438 INF: FPGA: Recv ZPIEZORD 26924
17-03-17 21:05:22.388 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:22.388 -07 000000541 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.621 V. Piezo Error = -8.7 V.
17-03-17 21:05:22.388 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30867 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30866 (-137.8 uncal um), StdDev = 7 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30858 (-137.8 uncal um), Max = 30878 (-137.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:05:22.388 -07 000000541 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30867, posNoise = 11, negNoise = 9
17-03-17 21:05:22.388 -07 000000541 INF: Z Motor: After move to -0.138622, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:22.388 -07 000000541 INF: Z Motor: Settle wait time = 1450 ms, measure time = 103 ms (allowed 150 ms), total time = 1553 ms
17-03-17 21:05:22.388 -07 000000541 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:05:22.438 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 21:05:22.438 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:05:22.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:22.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:22.438 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:22.438 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:22.438 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:05:22.438 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:22.438 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:05:22.438 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:05:22.448 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:05:22.448 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:05:22.458 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:05:22.458 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:05:22.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:05:22.508 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:05:22.708 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:05:22.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:05:22.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:05:22.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:05:22.748 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:05:22.748 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 21:05:22.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:05:22.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:05:22.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:22.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:05:22.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:05:22.848 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:05:22.848 -07 000000541 INF: Autofocus start
17-03-17 21:05:22.848 -07 000000541 INF: MeasureProfile start
17-03-17 21:05:22.848 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:05:22.858 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:05:22.858 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:05:22.858 -07 000000541 INF: MeasureProfile done
17-03-17 21:05:22.858 -07 000000541 INF: X=32  Z correction [um]=0.1299841
17-03-17 21:05:22.858 -07 000000541 INF: Autofocus finished
17-03-17 21:05:23.058 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:05:23.058 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:05:23.058 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.13861950819087. ----------
17-03-17 21:05:23.058 -07 000000610 INF: Cycle	46	Tile	7	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:05:23.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28823, sync = True, waitForSettling = True)
17-03-17 21:05:23.068 -07 000000610 INF: Z Motor: Moving to -0.131943 mm, started at -0.138620 mm, distance = 6.68 um
17-03-17 21:05:23.068 -07 000000610 INF: FPGA: Xmit ZDACW 28823\n [Z Motor]
17-03-17 21:05:23.068 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 21:05:23.078 -07 000000610 INF: FPGA: 'ZDACW 28823' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:23.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:23.078 -07 000000482 INF: FPGA: Recv ZDACR 28823
17-03-17 21:05:23.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:23.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:05:23.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:23.238 -07 000000438 INF: FPGA: Recv ZSGSRD 29836
17-03-17 21:05:23.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:23.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:23.248 -07 000000627 INF: FPGA: Recv ZSGSRD 29825
17-03-17 21:05:23.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:23.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:23.258 -07 000000541 INF: FPGA: Recv ZSGSRD 29831
17-03-17 21:05:23.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:23.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:23.268 -07 000000429 INF: FPGA: Recv ZSGSRD 29829
17-03-17 21:05:23.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:23.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:23.278 -07 000000438 INF: FPGA: Recv ZSGSRD 29823
17-03-17 21:05:23.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:23.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:23.288 -07 000000576 INF: FPGA: Recv ZSGSRD 29829
17-03-17 21:05:23.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:23.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:23.298 -07 000000541 INF: FPGA: Recv ZSGSRD 29831
17-03-17 21:05:23.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:23.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:23.308 -07 000000627 INF: FPGA: Recv ZSGSRD 29833
17-03-17 21:05:23.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:23.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:23.318 -07 000000501 INF: FPGA: Recv ZSGSRD 29826
17-03-17 21:05:23.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:23.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:23.328 -07 000000459 INF: FPGA: Recv ZSGSRD 29826
17-03-17 21:05:23.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:23.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:23.338 -07 000000618 INF: FPGA: Recv ZPIEZORD 25565
17-03-17 21:05:23.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:23.348 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -9.4 V.
17-03-17 21:05:23.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29829 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29829 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29823 (-131.1 uncal um), Max = 29836 (-131.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:05:23.348 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29829, posNoise = 7, negNoise = 6
17-03-17 21:05:23.348 -07 000000610 INF: Z Motor: After move to -0.131943, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:23.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:05:23.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:23.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:23.348 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:23.348 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:23.348 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:05:23.348 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:05:23.348 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:05:23.348 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:23.348 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:05:23.348 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:05:23.348 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:05:23.348 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:05:23.358 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:05:23.358 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:05:23.358 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:05:23.358 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:05:23.368 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:05:23.368 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:05:23.368 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:05:23.368 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 21:05:23.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28999 150\n [Camera]
17-03-17 21:05:23.568 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:05:23.998 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 619
17-03-17 21:05:23.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 619
17-03-17 21:05:23.998 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:23.998 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:23.998 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:05:24.008 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 619
17-03-17 21:05:24.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 619
17-03-17 21:05:24.008 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:24.008 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:24.008 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:05:24.188 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28999 810
17-03-17 21:05:24.338 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:05:24.388 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:05:24.388 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:05:24.388 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:24.388 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:05:24.388 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:05:24.388 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:24.388 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:24.388 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:05:24.388 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:24.398 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:05:24.548 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:05:24.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:05:24.548 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:24.548 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:24.548 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 21:05:24.548 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:05:24.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:05:24.548 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:24.548 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:24.548 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:05:24.738 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:05:24.738 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:05:24.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28999 150' command took 2 ms to send, 1354 ms to get response, and 1363 ms overall
17-03-17 21:05:24.738 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.132529
17-03-17 21:05:24.738 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13253 mm
17-03-17 21:05:24.738 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:05:24.738 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:05:24.738 -07 000000459 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 21:05:24.738 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:24.738 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 28951, sync = True, waitForSettling = False)
17-03-17 21:05:24.738 -07 000000541 INF: Z Motor: Moving to -0.132529 mm, started at -0.131951 mm, distance = -0.58 um
17-03-17 21:05:24.748 -07 000000541 INF: FPGA: Xmit ZDACW 28951\n [Z Motor]
17-03-17 21:05:24.748 -07 000000626 INF: FPGA: Recv YRDPOS 132873
17-03-17 21:05:24.748 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 21:05:24.748 -07 000000459 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:24.748 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:05:24.748 -07 000000459 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:05:24.748 -07 000000459 INF: Y Motor: Moving 1349 steps-28
17-03-17 21:05:24.758 -07 000000541 INF: FPGA: 'ZDACW 28951' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:24.758 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:24.758 -07 000000476 INF: FPGA: Recv ZDACR 28951
17-03-17 21:05:24.768 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:05:24.768 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:24.768 -07 000000541 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 21:05:24.928 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:05:24.928 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:05:24.928 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:24.928 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:05:24.928 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:05:24.928 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:24.938 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:05:24.938 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:05:24.938 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:05:24.948 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:05:25.138 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 21:05:25.138 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 21:05:25.178 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:25.178 -07 000000501 INF: FPGA: Recv YRDPOS 134583
17-03-17 21:05:25.188 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:05:25.188 -07 000000459 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:25.188 -07 000000459 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 21:05:25.188 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.158 mm/sec
17-03-17 21:05:26.138 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:26.138 -07 000000012 INF: FPGA: Recv YRDPOS 134583
17-03-17 21:05:26.148 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:26.148 -07 000000459 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:26.168 -07 000000459 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:05:26.168 -07 000000459 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:05:26.168 -07 000000459 INF: Y Motor: Moved to 65.7144 after 1426 ms (table move)
17-03-17 21:05:26.178 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132529 mm (DAC = 28951)
17-03-17 21:05:26.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.178 -07 000000576 INF: FPGA: Recv ZSGSRD 29921
17-03-17 21:05:26.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:05:26.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.188 -07 000000476 INF: FPGA: Recv ZSGSRD 29922
17-03-17 21:05:26.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.198 -07 000000438 INF: FPGA: Recv ZSGSRD 29912
17-03-17 21:05:26.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.208 -07 000000627 INF: FPGA: Recv ZSGSRD 29925
17-03-17 21:05:26.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.218 -07 000000576 INF: FPGA: Recv ZSGSRD 29920
17-03-17 21:05:26.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.228 -07 000000626 INF: FPGA: Recv ZSGSRD 29918
17-03-17 21:05:26.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.238 -07 000000618 INF: FPGA: Recv ZSGSRD 29912
17-03-17 21:05:26.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.248 -07 000000459 INF: FPGA: Recv ZSGSRD 29923
17-03-17 21:05:26.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.258 -07 000000541 INF: FPGA: Recv ZSGSRD 29918
17-03-17 21:05:26.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.268 -07 000000626 INF: FPGA: Recv ZSGSRD 29919
17-03-17 21:05:26.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:26.278 -07 000000431 INF: FPGA: Recv ZPIEZORD 25709
17-03-17 21:05:26.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.288 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.418 V. Piezo Error = -9.3 V.
17-03-17 21:05:26.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29919 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29920 (-131.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29912 (-131.7 uncal um), Max = 29925 (-131.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:05:26.288 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29919, posNoise = 6, negNoise = 7
17-03-17 21:05:26.288 -07 000000610 INF: Z Motor: After move to -0.132529, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:26.288 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 110 ms (allowed 150 ms), total time = 1541 ms
17-03-17 21:05:26.288 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 21:05:26.328 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 21:05:26.328 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:05:26.328 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.132529355080481. ----------
17-03-17 21:05:26.328 -07 000000610 INF: Cycle	46	Tile	8	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:05:26.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28774, sync = True, waitForSettling = True)
17-03-17 21:05:26.328 -07 000000610 INF: Z Motor: Moving to -0.131719 mm, started at -0.132529 mm, distance = 0.81 um
17-03-17 21:05:26.328 -07 000000610 INF: FPGA: Xmit ZDACW 28774\n [Z Motor]
17-03-17 21:05:26.328 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 21:05:26.338 -07 000000610 INF: FPGA: 'ZDACW 28774' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:05:26.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:26.338 -07 000000459 INF: FPGA: Recv ZDACR 28774
17-03-17 21:05:26.348 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:05:26.418 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.990831,
17-03-17 21:05:26.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.498 -07 000000459 INF: FPGA: Recv ZSGSRD 29791
17-03-17 21:05:26.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.508 -07 000000476 INF: FPGA: Recv ZSGSRD 29801
17-03-17 21:05:26.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.518 -07 000000433 INF: FPGA: Recv ZSGSRD 29790
17-03-17 21:05:26.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.528 -07 000000431 INF: FPGA: Recv ZSGSRD 29793
17-03-17 21:05:26.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.538 -07 000000459 INF: FPGA: Recv ZSGSRD 29793
17-03-17 21:05:26.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.548 -07 000000618 INF: FPGA: Recv ZSGSRD 29791
17-03-17 21:05:26.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.558 -07 000000626 INF: FPGA: Recv ZSGSRD 29793
17-03-17 21:05:26.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.578 -07 000000541 INF: FPGA: Recv ZSGSRD 29799
17-03-17 21:05:26.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:05:26.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.588 -07 000000627 INF: FPGA: Recv ZSGSRD 29793
17-03-17 21:05:26.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:26.598 -07 000000012 INF: FPGA: Recv ZSGSRD 29789
17-03-17 21:05:26.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:26.608 -07 000000431 INF: FPGA: Recv ZPIEZORD 25533
17-03-17 21:05:26.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:26.618 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.391 V. Piezo Error = -9.4 V.
17-03-17 21:05:26.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29793 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29793 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29789 (-130.9 uncal um), Max = 29801 (-131.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:05:26.618 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29793, posNoise = 8, negNoise = 4
17-03-17 21:05:26.618 -07 000000610 INF: Z Motor: After move to -0.131719, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:26.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 21:05:26.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:26.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:26.618 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:26.618 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:26.618 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:05:26.618 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:26.618 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:05:26.618 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:05:26.618 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:05:26.618 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:05:26.618 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:05:26.618 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:05:26.628 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:05:26.628 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:05:26.628 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:05:26.628 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:05:26.638 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:05:26.638 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:05:26.638 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:05:26.638 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:05:26.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28951 150\n [Camera]
17-03-17 21:05:26.838 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:05:26.848 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:05:26.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:05:27.268 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:05:27.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:05:27.268 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:27.268 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:27.268 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 21:05:27.268 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:05:27.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:05:27.268 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:27.268 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:27.268 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 21:05:27.458 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28951 810
17-03-17 21:05:27.608 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:05:27.648 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:05:27.648 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:05:27.648 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:27.648 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:05:27.648 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:05:27.648 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:27.648 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:27.648 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:05:27.648 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:27.658 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:05:27.808 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:05:27.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:05:27.808 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:27.808 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:27.808 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 21:05:27.808 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:05:27.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:05:27.808 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:27.808 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:27.808 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 21:05:27.998 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-17 21:05:27.998 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:05:27.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28951 150' command took 2 ms to send, 1358 ms to get response, and 1365 ms overall
17-03-17 21:05:27.998 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.132092
17-03-17 21:05:28.008 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13209 mm
17-03-17 21:05:28.008 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:05:28.008 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:05:28.008 -07 000000012 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 21:05:28.008 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 28856, sync = True, waitForSettling = False)
17-03-17 21:05:28.008 -07 000000438 INF: Z Motor: Moving to -0.132094 mm, started at -0.131720 mm, distance = -0.37 um
17-03-17 21:05:28.008 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:28.008 -07 000000576 INF: FPGA: Recv YRDPOS 134583
17-03-17 21:05:28.018 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:05:28.018 -07 000000012 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:28.018 -07 000000012 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:05:28.018 -07 000000012 INF: Y Motor: Moving 1341 steps-17
17-03-17 21:05:28.018 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:05:28.028 -07 000000438 INF: FPGA: Xmit ZDACW 28856\n [Z Motor]
17-03-17 21:05:28.028 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:05:28.038 -07 000000438 INF: FPGA: 'ZDACW 28856' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:05:28.038 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:28.038 -07 000000429 INF: FPGA: Recv ZDACR 28856
17-03-17 21:05:28.048 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:28.048 -07 000000438 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 21:05:28.188 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:05:28.198 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 21:05:28.198 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:28.198 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:05:28.198 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:05:28.198 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:28.198 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:28.198 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:28.198 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:05:28.208 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:05:28.388 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:05:28.388 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 21:05:28.428 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:28.428 -07 000000501 INF: FPGA: Recv YRDPOS 136272
17-03-17 21:05:28.438 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:05:28.438 -07 000000012 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:28.438 -07 000000012 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:05:28.438 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.218 mm/sec
17-03-17 21:05:29.388 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:29.388 -07 000000476 INF: FPGA: Recv YRDPOS 136273
17-03-17 21:05:29.398 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:29.398 -07 000000012 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:29.418 -07 000000012 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:05:29.418 -07 000000012 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:05:29.418 -07 000000012 INF: Y Motor: Moved to 66.5396 after 1410 ms (table move)
17-03-17 21:05:29.418 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132094 mm (DAC = 28856)
17-03-17 21:05:29.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.418 -07 000000627 INF: FPGA: Recv ZSGSRD 29845
17-03-17 21:05:29.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:05:29.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.428 -07 000000576 INF: FPGA: Recv ZSGSRD 29852
17-03-17 21:05:29.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.438 -07 000000501 INF: FPGA: Recv ZSGSRD 29850
17-03-17 21:05:29.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.448 -07 000000541 INF: FPGA: Recv ZSGSRD 29864
17-03-17 21:05:29.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.458 -07 000000618 INF: FPGA: Recv ZSGSRD 29854
17-03-17 21:05:29.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.468 -07 000000476 INF: FPGA: Recv ZSGSRD 29853
17-03-17 21:05:29.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.478 -07 000000433 INF: FPGA: Recv ZSGSRD 29850
17-03-17 21:05:29.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.488 -07 000000541 INF: FPGA: Recv ZSGSRD 29849
17-03-17 21:05:29.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.498 -07 000000618 INF: FPGA: Recv ZSGSRD 29852
17-03-17 21:05:29.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.508 -07 000000576 INF: FPGA: Recv ZSGSRD 29851
17-03-17 21:05:29.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:29.518 -07 000000459 INF: FPGA: Recv ZPIEZORD 25634
17-03-17 21:05:29.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.528 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -9.3 V.
17-03-17 21:05:29.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29852 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29852 (-131.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29845 (-131.3 uncal um), Max = 29864 (-131.4 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:05:29.528 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29852, posNoise = 12, negNoise = 7
17-03-17 21:05:29.528 -07 000000610 INF: Z Motor: After move to -0.132094, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:29.528 -07 000000610 INF: Z Motor: Settle wait time = 1412 ms, measure time = 105 ms (allowed 150 ms), total time = 1517 ms
17-03-17 21:05:29.528 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:05:29.578 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1569 ms
17-03-17 21:05:29.578 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:05:29.578 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.132098932866983. ----------
17-03-17 21:05:29.578 -07 000000610 INF: Cycle	46	Tile	9	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:05:29.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28679, sync = True, waitForSettling = True)
17-03-17 21:05:29.578 -07 000000610 INF: Z Motor: Moving to -0.131284 mm, started at -0.132099 mm, distance = 0.81 um
17-03-17 21:05:29.578 -07 000000610 INF: FPGA: Xmit ZDACW 28679\n [Z Motor]
17-03-17 21:05:29.578 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:05:29.588 -07 000000610 INF: FPGA: 'ZDACW 28679' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:05:29.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:29.588 -07 000000476 INF: FPGA: Recv ZDACR 28679
17-03-17 21:05:29.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:05:29.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.748 -07 000000459 INF: FPGA: Recv ZSGSRD 29729
17-03-17 21:05:29.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.758 -07 000000438 INF: FPGA: Recv ZSGSRD 29729
17-03-17 21:05:29.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.768 -07 000000429 INF: FPGA: Recv ZSGSRD 29724
17-03-17 21:05:29.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.778 -07 000000382 INF: FPGA: Recv ZSGSRD 29733
17-03-17 21:05:29.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.788 -07 000000627 INF: FPGA: Recv ZSGSRD 29725
17-03-17 21:05:29.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.798 -07 000000012 INF: FPGA: Recv ZSGSRD 29719
17-03-17 21:05:29.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.808 -07 000000576 INF: FPGA: Recv ZSGSRD 29724
17-03-17 21:05:29.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.818 -07 000000476 INF: FPGA: Recv ZSGSRD 29727
17-03-17 21:05:29.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.828 -07 000000627 INF: FPGA: Recv ZSGSRD 29726
17-03-17 21:05:29.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:29.838 -07 000000541 INF: FPGA: Recv ZSGSRD 29729
17-03-17 21:05:29.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:29.848 -07 000000438 INF: FPGA: Recv ZPIEZORD 25457
17-03-17 21:05:29.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:29.858 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.376 V. Piezo Error = -9.4 V.
17-03-17 21:05:29.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29726 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29726 (-130.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29719 (-130.5 uncal um), Max = 29733 (-130.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:05:29.858 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29726, posNoise = 7, negNoise = 7
17-03-17 21:05:29.858 -07 000000610 INF: Z Motor: After move to -0.131284, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:29.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:05:29.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:29.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:29.858 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:29.858 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:05:29.858 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:29.858 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:29.858 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:05:29.858 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:05:29.858 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:05:29.858 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:05:29.858 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:05:29.858 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:05:29.858 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:05:29.858 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:05:29.858 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:05:29.868 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:05:29.878 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:05:29.878 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:05:29.878 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:05:29.878 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:05:29.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28856 150\n [Camera]
17-03-17 21:05:30.078 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:05:30.508 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:05:30.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:05:30.508 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:30.508 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:30.508 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 21:05:30.508 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:05:30.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:05:30.508 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:30.508 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:30.508 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 21:05:30.698 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28856 813
17-03-17 21:05:30.848 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:05:30.888 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:05:30.888 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:05:30.888 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:30.888 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:05:30.888 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:05:30.888 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:30.888 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:30.888 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:05:30.888 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:30.898 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:05:31.058 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:05:31.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:05:31.058 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:31.058 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:31.058 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 21:05:31.058 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:05:31.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:05:31.058 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:31.058 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:31.058 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 21:05:31.248 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:05:31.248 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:05:31.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28856 150' command took 2 ms to send, 1352 ms to get response, and 1363 ms overall
17-03-17 21:05:31.248 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.132024
17-03-17 21:05:31.248 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13202 mm
17-03-17 21:05:31.248 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:05:31.248 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 28841, sync = True, waitForSettling = False)
17-03-17 21:05:31.248 -07 000000627 INF: Z Motor: Moving to -0.132026 mm, started at -0.131289 mm, distance = -0.74 um
17-03-17 21:05:31.248 -07 000000627 INF: FPGA: Xmit ZDACW 28841\n [Z Motor]
17-03-17 21:05:31.248 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:05:31.248 -07 000000576 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 21:05:31.258 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:31.258 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 21:05:31.258 -07 000000627 INF: FPGA: 'ZDACW 28841' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:05:31.258 -07 000000541 INF: FPGA: Recv YRDPOS 136273
17-03-17 21:05:31.268 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:05:31.268 -07 000000576 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:31.268 -07 000000576 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:05:31.268 -07 000000576 INF: Y Motor: Moving 1349 steps-28
17-03-17 21:05:31.268 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:31.268 -07 000000431 INF: FPGA: Recv ZDACR 28841
17-03-17 21:05:31.278 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:05:31.278 -07 000000627 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 21:05:31.278 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:05:31.438 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:05:31.438 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:05:31.438 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:31.438 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:31.438 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:05:31.438 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:05:31.438 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:31.448 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:05:31.448 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:05:31.448 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:05:31.648 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:05:31.648 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 21:05:31.688 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:31.698 -07 000000459 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:05:31.698 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:05:31.698 -07 000000576 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:31.698 -07 000000576 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 21:05:31.698 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.173 mm/sec
17-03-17 21:05:31.778 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.008536,
17-03-17 21:05:31.848 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:05:31.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:05:32.648 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:32.648 -07 000000626 INF: FPGA: Recv YRDPOS 137979
17-03-17 21:05:32.658 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:32.658 -07 000000576 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:32.678 -07 000000576 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:05:32.678 -07 000000576 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:05:32.678 -07 000000576 INF: Y Motor: Moved to 67.3726 after 1425 ms (table move)
17-03-17 21:05:32.678 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132026 mm (DAC = 28841)
17-03-17 21:05:32.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:32.678 -07 000000618 INF: FPGA: Recv ZSGSRD 29845
17-03-17 21:05:32.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:05:32.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:32.688 -07 000000627 INF: FPGA: Recv ZSGSRD 29835
17-03-17 21:05:32.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:32.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:32.698 -07 000000459 INF: FPGA: Recv ZSGSRD 29839
17-03-17 21:05:32.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:32.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:32.708 -07 000000627 INF: FPGA: Recv ZSGSRD 29841
17-03-17 21:05:32.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:32.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:32.718 -07 000000438 INF: FPGA: Recv ZSGSRD 29848
17-03-17 21:05:32.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:32.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:32.728 -07 000000433 INF: FPGA: Recv ZSGSRD 29849
17-03-17 21:05:32.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:32.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:32.738 -07 000000618 INF: FPGA: Recv ZSGSRD 29836
17-03-17 21:05:32.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:32.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:32.748 -07 000000433 INF: FPGA: Recv ZSGSRD 29838
17-03-17 21:05:32.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:32.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:32.758 -07 000000618 INF: FPGA: Recv ZSGSRD 29839
17-03-17 21:05:32.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:32.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:32.768 -07 000000431 INF: FPGA: Recv ZSGSRD 29842
17-03-17 21:05:32.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:32.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:32.778 -07 000000476 INF: FPGA: Recv ZPIEZORD 25611
17-03-17 21:05:32.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:32.788 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -9.3 V.
17-03-17 21:05:32.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29841 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29840 (-131.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29835 (-131.2 uncal um), Max = 29849 (-131.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:05:32.788 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29841, posNoise = 8, negNoise = 6
17-03-17 21:05:32.788 -07 000000610 INF: Z Motor: After move to -0.132026, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:32.788 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 104 ms (allowed 150 ms), total time = 1532 ms
17-03-17 21:05:32.788 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:05:32.838 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 21:05:32.838 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:05:32.838 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.132028266533424. ----------
17-03-17 21:05:32.838 -07 000000610 INF: Cycle	46	Tile	10	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:05:32.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28664, sync = True, waitForSettling = True)
17-03-17 21:05:32.838 -07 000000610 INF: Z Motor: Moving to -0.131215 mm, started at -0.132028 mm, distance = 0.81 um
17-03-17 21:05:32.838 -07 000000610 INF: FPGA: Xmit ZDACW 28664\n [Z Motor]
17-03-17 21:05:32.838 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:05:32.848 -07 000000610 INF: FPGA: 'ZDACW 28664' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:05:32.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:32.848 -07 000000012 INF: FPGA: Recv ZDACR 28664
17-03-17 21:05:32.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:32.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:05:33.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:33.008 -07 000000012 INF: FPGA: Recv ZSGSRD 29713
17-03-17 21:05:33.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:33.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:33.018 -07 000000431 INF: FPGA: Recv ZSGSRD 29721
17-03-17 21:05:33.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:33.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:33.028 -07 000000438 INF: FPGA: Recv ZSGSRD 29716
17-03-17 21:05:33.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:33.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:33.038 -07 000000459 INF: FPGA: Recv ZSGSRD 29718
17-03-17 21:05:33.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:33.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:33.048 -07 000000438 INF: FPGA: Recv ZSGSRD 29719
17-03-17 21:05:33.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:33.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:33.058 -07 000000476 INF: FPGA: Recv ZSGSRD 29713
17-03-17 21:05:33.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:33.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:33.068 -07 000000576 INF: FPGA: Recv ZSGSRD 29716
17-03-17 21:05:33.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:05:33.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:33.078 -07 000000438 INF: FPGA: Recv ZSGSRD 29715
17-03-17 21:05:33.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:33.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:33.088 -07 000000433 INF: FPGA: Recv ZSGSRD 29715
17-03-17 21:05:33.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:33.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:33.098 -07 000000431 INF: FPGA: Recv ZSGSRD 29711
17-03-17 21:05:33.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:33.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:33.108 -07 000000012 INF: FPGA: Recv ZPIEZORD 25453
17-03-17 21:05:33.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:33.118 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.374 V. Piezo Error = -9.4 V.
17-03-17 21:05:33.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29716 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29716 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29711 (-130.4 uncal um), Max = 29721 (-130.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:05:33.118 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29716, posNoise = 5, negNoise = 5
17-03-17 21:05:33.118 -07 000000610 INF: Z Motor: After move to -0.131215, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:33.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:05:33.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:33.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:33.118 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:33.118 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:33.118 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:05:33.118 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:33.118 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:05:33.118 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:05:33.118 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:05:33.118 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:05:33.118 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:05:33.118 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:05:33.118 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:05:33.118 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:05:33.128 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:05:33.128 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:05:33.138 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 21:05:33.138 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 21:05:33.138 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 21:05:33.138 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:05:33.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28841 150\n [Camera]
17-03-17 21:05:33.338 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:05:33.768 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:05:33.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:05:33.768 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:33.768 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:33.768 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 21:05:33.768 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:05:33.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:05:33.768 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:33.768 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:33.768 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-17 21:05:33.958 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28841 810
17-03-17 21:05:34.108 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:05:34.148 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:05:34.148 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:05:34.148 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:34.148 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:05:34.148 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:05:34.148 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:34.158 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:05:34.158 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:05:34.158 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:05:34.168 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:05:34.318 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:05:34.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:05:34.318 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:34.318 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:34.318 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-17 21:05:34.318 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:05:34.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:05:34.318 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:34.318 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:34.318 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) start.
17-03-17 21:05:34.508 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:05:34.508 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:05:34.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28841 150' command took 2 ms to send, 1353 ms to get response, and 1363 ms overall
17-03-17 21:05:34.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:05:34.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.131225240015704. ------
17-03-17 21:05:34.518 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13772 mm
17-03-17 21:05:34.518 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:05:34.518 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:05:34.518 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:05:34.518 -07 000000501 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 21:05:34.518 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 30085, sync = True, waitForSettling = False)
17-03-17 21:05:34.518 -07 000000433 INF: Z Motor: Moving to -0.137720 mm, started at -0.131225 mm, distance = -6.50 um
17-03-17 21:05:34.518 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:05:34.528 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:05:34.528 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:34.528 -07 000000576 INF: FPGA: Recv YRDPOS 137979
17-03-17 21:05:34.538 -07 000000433 INF: FPGA: Xmit ZDACW 30085\n [Z Motor]
17-03-17 21:05:34.538 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:05:34.538 -07 000000501 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:34.538 -07 000000501 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:05:34.538 -07 000000501 INF: Y Motor: Moving 1344 steps-22
17-03-17 21:05:34.538 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:05:34.548 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:05:34.548 -07 000000433 INF: FPGA: 'ZDACW 30085' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:05:34.558 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:05:34.568 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:34.568 -07 000000431 INF: FPGA: Recv ZDACR 30085
17-03-17 21:05:34.578 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:05:34.578 -07 000000433 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 21:05:34.698 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:05:34.698 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:05:34.698 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:34.708 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 21:05:34.708 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:05:34.708 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:34.708 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:34.708 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:05:34.708 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:34.718 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:05:34.748 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:05:34.748 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:05:34.928 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 21:05:34.928 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:05:34.968 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:34.978 -07 000000433 INF: FPGA: Recv YRDPOS 139684
17-03-17 21:05:34.978 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:05:34.978 -07 000000501 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:34.978 -07 000000501 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 21:05:34.978 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-17 21:05:35.928 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:35.928 -07 000000382 INF: FPGA: Recv YRDPOS 139685
17-03-17 21:05:35.938 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:35.938 -07 000000501 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:35.958 -07 000000501 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:05:35.958 -07 000000501 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:05:35.958 -07 000000501 INF: Y Motor: Moved to 68.2056 after 1436 ms (table move)
17-03-17 21:05:35.958 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137720 mm (DAC = 30085)
17-03-17 21:05:35.958 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:35.958 -07 000000433 INF: FPGA: Recv ZSGSRD 30739
17-03-17 21:05:35.968 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:05:35.968 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:35.968 -07 000000438 INF: FPGA: Recv ZSGSRD 30729
17-03-17 21:05:35.978 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:35.978 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:35.978 -07 000000431 INF: FPGA: Recv ZSGSRD 30722
17-03-17 21:05:35.988 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:05:35.988 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:35.988 -07 000000476 INF: FPGA: Recv ZSGSRD 30737
17-03-17 21:05:35.998 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:35.998 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:35.998 -07 000000382 INF: FPGA: Recv ZSGSRD 30735
17-03-17 21:05:36.008 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:36.008 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:36.008 -07 000000476 INF: FPGA: Recv ZSGSRD 30732
17-03-17 21:05:36.018 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:36.018 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:36.018 -07 000000382 INF: FPGA: Recv ZSGSRD 30726
17-03-17 21:05:36.028 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:36.028 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:36.028 -07 000000429 INF: FPGA: Recv ZSGSRD 30721
17-03-17 21:05:36.038 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:36.038 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:36.038 -07 000000431 INF: FPGA: Recv ZSGSRD 30729
17-03-17 21:05:36.048 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:36.048 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:36.048 -07 000000476 INF: FPGA: Recv ZSGSRD 30725
17-03-17 21:05:36.058 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:36.058 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:36.058 -07 000000431 INF: FPGA: Recv ZPIEZORD 26781
17-03-17 21:05:36.068 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:36.068 -07 000000626 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.591 V. Piezo Error = -8.7 V.
17-03-17 21:05:36.068 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30730 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30729 (-136.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30721 (-136.9 uncal um), Max = 30739 (-137.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:05:36.068 -07 000000626 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30730, posNoise = 9, negNoise = 9
17-03-17 21:05:36.068 -07 000000626 INF: Z Motor: After move to -0.137720, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:36.068 -07 000000626 INF: Z Motor: Settle wait time = 1439 ms, measure time = 107 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:05:36.068 -07 000000626 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 21:05:36.118 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 21:05:36.118 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:05:36.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:36.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:36.118 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:36.118 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:36.118 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:05:36.118 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:36.118 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:05:36.118 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:05:36.128 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:05:36.128 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:05:36.138 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:05:36.138 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:05:36.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:05:36.188 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:05:36.388 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:05:36.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:05:36.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:05:36.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 21:05:36.428 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:05:36.428 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:05:36.428 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:05:36.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:05:36.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:36.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:05:36.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:05:36.528 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:05:36.528 -07 000000431 INF: Autofocus start
17-03-17 21:05:36.528 -07 000000431 INF: MeasureProfile start
17-03-17 21:05:36.528 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:05:36.538 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:05:36.538 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:05:36.548 -07 000000431 INF: MeasureProfile done
17-03-17 21:05:36.548 -07 000000431 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 21:05:36.548 -07 000000431 INF: Autofocus finished
17-03-17 21:05:36.738 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:05:36.738 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:05:36.738 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.137739391127449. ----------
17-03-17 21:05:36.738 -07 000000610 INF: Cycle	46	Tile	11	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:05:36.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28579, sync = True, waitForSettling = True)
17-03-17 21:05:36.748 -07 000000610 INF: Z Motor: Moving to -0.130826 mm, started at -0.137739 mm, distance = 6.91 um
17-03-17 21:05:36.748 -07 000000610 INF: FPGA: Xmit ZDACW 28579\n [Z Motor]
17-03-17 21:05:36.748 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:05:36.758 -07 000000610 INF: FPGA: 'ZDACW 28579' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:05:36.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:36.758 -07 000000501 INF: FPGA: Recv ZDACR 28579
17-03-17 21:05:36.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:36.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:05:36.848 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:05:36.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:05:36.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:36.918 -07 000000627 INF: FPGA: Recv ZSGSRD 29657
17-03-17 21:05:36.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:36.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:36.928 -07 000000382 INF: FPGA: Recv ZSGSRD 29654
17-03-17 21:05:36.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:36.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:36.938 -07 000000012 INF: FPGA: Recv ZSGSRD 29651
17-03-17 21:05:36.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:36.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:36.948 -07 000000627 INF: FPGA: Recv ZSGSRD 29654
17-03-17 21:05:36.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:36.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:36.958 -07 000000459 INF: FPGA: Recv ZSGSRD 29657
17-03-17 21:05:36.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:36.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:36.968 -07 000000012 INF: FPGA: Recv ZSGSRD 29659
17-03-17 21:05:36.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:36.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:36.978 -07 000000431 INF: FPGA: Recv ZSGSRD 29649
17-03-17 21:05:36.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:36.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:36.988 -07 000000012 INF: FPGA: Recv ZSGSRD 29658
17-03-17 21:05:36.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:36.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:36.998 -07 000000433 INF: FPGA: Recv ZSGSRD 29655
17-03-17 21:05:37.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:37.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:37.008 -07 000000459 INF: FPGA: Recv ZSGSRD 29655
17-03-17 21:05:37.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:37.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:37.018 -07 000000433 INF: FPGA: Recv ZPIEZORD 25375
17-03-17 21:05:37.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:37.028 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.361 V. Piezo Error = -9.4 V.
17-03-17 21:05:37.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29655 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29655 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29649 (-130.0 uncal um), Max = 29659 (-130.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:05:37.028 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29655, posNoise = 4, negNoise = 6
17-03-17 21:05:37.028 -07 000000610 INF: Z Motor: After move to -0.130826, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:37.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:05:37.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:37.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:37.028 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:05:37.028 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:37.028 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:37.028 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:37.028 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:05:37.028 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:05:37.028 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:05:37.028 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:05:37.028 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:05:37.028 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:05:37.038 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:05:37.038 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:05:37.038 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:05:37.038 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:05:37.048 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:05:37.048 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:05:37.048 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:05:37.048 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:05:37.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28756 150\n [Camera]
17-03-17 21:05:37.138 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.003063,
17-03-17 21:05:37.248 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:05:37.678 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:05:37.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:05:37.678 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:37.678 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:37.678 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) start.
17-03-17 21:05:37.678 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:05:37.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:05:37.678 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:37.678 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:37.678 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) start.
17-03-17 21:05:37.868 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28756 812
17-03-17 21:05:38.018 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:05:38.048 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 3023638688, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:05:38.048 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:05:38.048 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:38.048 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:05:38.048 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:05:38.048 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:38.058 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:05:38.058 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:05:38.058 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:05:38.068 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:05:38.218 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:05:38.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:05:38.218 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:38.218 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:38.218 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) start.
17-03-17 21:05:38.228 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:05:38.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:05:38.228 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:38.388 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:38.388 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:05:38.408 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-17 21:05:38.408 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:05:38.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28756 150' command took 2 ms to send, 1359 ms to get response, and 1363 ms overall
17-03-17 21:05:38.418 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.131470
17-03-17 21:05:38.418 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13147 mm
17-03-17 21:05:38.418 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:05:38.418 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:05:38.418 -07 000000501 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 21:05:38.418 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:38.418 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 28720, sync = True, waitForSettling = False)
17-03-17 21:05:38.418 -07 000000433 INF: Z Motor: Moving to -0.131472 mm, started at -0.130833 mm, distance = -0.64 um
17-03-17 21:05:38.418 -07 000000459 INF: FPGA: Recv YRDPOS 139685
17-03-17 21:05:38.428 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:05:38.428 -07 000000501 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:38.428 -07 000000501 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:05:38.428 -07 000000501 INF: Y Motor: Moving 1339 steps-15
17-03-17 21:05:38.428 -07 000000433 INF: FPGA: Xmit ZDACW 28720\n [Z Motor]
17-03-17 21:05:38.428 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 21:05:38.438 -07 000000433 INF: FPGA: 'ZDACW 28720' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:05:38.438 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:38.438 -07 000000438 INF: FPGA: Recv ZDACR 28720
17-03-17 21:05:38.448 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:05:38.448 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:38.448 -07 000000433 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 21:05:38.638 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 3087011888, 0x0, 391868352) end. Duration was 412 ms.
17-03-17 21:05:38.638 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 21:05:38.638 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:38.638 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:05:38.638 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 420 ms.
17-03-17 21:05:38.768 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:05:38.768 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:05:38.768 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:38.768 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:38.778 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 554 ms.
17-03-17 21:05:38.818 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:05:38.828 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 21:05:38.858 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:38.868 -07 000000459 INF: FPGA: Recv YRDPOS 141368
17-03-17 21:05:38.868 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 5 ms to get response, and 8 ms overall
17-03-17 21:05:38.868 -07 000000501 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:38.868 -07 000000501 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:05:38.868 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.837 mm, average velocity = 2.093 mm/sec
17-03-17 21:05:39.818 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:39.818 -07 000000433 INF: FPGA: Recv YRDPOS 141369
17-03-17 21:05:39.828 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:39.828 -07 000000501 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:39.848 -07 000000501 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:05:39.848 -07 000000501 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:05:39.848 -07 000000501 INF: Y Motor: Moved to 69.0278 after 1429 ms (table move)
17-03-17 21:05:39.848 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131472 mm (DAC = 28720)
17-03-17 21:05:39.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:39.848 -07 000000431 INF: FPGA: Recv ZSGSRD 29751
17-03-17 21:05:39.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:05:39.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:39.858 -07 000000429 INF: FPGA: Recv ZSGSRD 29753
17-03-17 21:05:39.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:39.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:39.868 -07 000000431 INF: FPGA: Recv ZSGSRD 29756
17-03-17 21:05:39.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:39.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:39.878 -07 000000438 INF: FPGA: Recv ZSGSRD 29759
17-03-17 21:05:39.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:39.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:39.888 -07 000000382 INF: FPGA: Recv ZSGSRD 29750
17-03-17 21:05:39.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:39.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:39.898 -07 000000431 INF: FPGA: Recv ZSGSRD 29761
17-03-17 21:05:39.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:39.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:39.908 -07 000000438 INF: FPGA: Recv ZSGSRD 29755
17-03-17 21:05:39.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:39.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:39.918 -07 000000382 INF: FPGA: Recv ZSGSRD 29748
17-03-17 21:05:39.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:39.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:39.928 -07 000000438 INF: FPGA: Recv ZSGSRD 29759
17-03-17 21:05:39.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:39.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:39.938 -07 000000382 INF: FPGA: Recv ZSGSRD 29752
17-03-17 21:05:39.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:39.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:39.948 -07 000000433 INF: FPGA: Recv ZPIEZORD 25522
17-03-17 21:05:39.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:39.958 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.382 V. Piezo Error = -9.3 V.
17-03-17 21:05:39.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29754 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29754 (-130.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29748 (-130.6 uncal um), Max = 29761 (-130.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:05:39.958 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29754, posNoise = 7, negNoise = 6
17-03-17 21:05:39.958 -07 000000610 INF: Z Motor: After move to -0.131472, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:39.958 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 105 ms (allowed 150 ms), total time = 1536 ms
17-03-17 21:05:39.958 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:05:40.008 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 21:05:40.008 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:05:40.008 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.131469360077091. ----------
17-03-17 21:05:40.008 -07 000000610 INF: Cycle	46	Tile	12	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:05:40.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28543, sync = True, waitForSettling = True)
17-03-17 21:05:40.008 -07 000000610 INF: Z Motor: Moving to -0.130661 mm, started at -0.131469 mm, distance = 0.81 um
17-03-17 21:05:40.008 -07 000000610 INF: FPGA: Xmit ZDACW 28543\n [Z Motor]
17-03-17 21:05:40.008 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:05:40.018 -07 000000610 INF: FPGA: 'ZDACW 28543' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:05:40.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:40.018 -07 000000627 INF: FPGA: Recv ZDACR 28543
17-03-17 21:05:40.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:40.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:05:40.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:40.178 -07 000000438 INF: FPGA: Recv ZSGSRD 29625
17-03-17 21:05:40.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:40.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:40.188 -07 000000627 INF: FPGA: Recv ZSGSRD 29630
17-03-17 21:05:40.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:40.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:40.198 -07 000000576 INF: FPGA: Recv ZSGSRD 29629
17-03-17 21:05:40.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:40.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:40.208 -07 000000438 INF: FPGA: Recv ZSGSRD 29629
17-03-17 21:05:40.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:40.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:40.218 -07 000000501 INF: FPGA: Recv ZSGSRD 29627
17-03-17 21:05:40.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:40.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:40.228 -07 000000438 INF: FPGA: Recv ZSGSRD 29627
17-03-17 21:05:40.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:40.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:40.238 -07 000000576 INF: FPGA: Recv ZSGSRD 29634
17-03-17 21:05:40.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:40.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:40.248 -07 000000618 INF: FPGA: Recv ZSGSRD 29630
17-03-17 21:05:40.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:40.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:40.258 -07 000000382 INF: FPGA: Recv ZSGSRD 29627
17-03-17 21:05:40.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:40.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:40.268 -07 000000438 INF: FPGA: Recv ZSGSRD 29626
17-03-17 21:05:40.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:40.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:40.278 -07 000000476 INF: FPGA: Recv ZPIEZORD 25332
17-03-17 21:05:40.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:40.288 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.355 V. Piezo Error = -9.4 V.
17-03-17 21:05:40.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29628 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29628 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29625 (-129.9 uncal um), Max = 29634 (-129.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:05:40.288 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29628, posNoise = 6, negNoise = 3
17-03-17 21:05:40.288 -07 000000610 INF: Z Motor: After move to -0.130661, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:40.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:05:40.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:40.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:40.288 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:40.288 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:40.288 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:05:40.288 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:05:40.288 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:05:40.288 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:40.288 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:05:40.288 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:05:40.288 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:05:40.288 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:05:40.298 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:05:40.298 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:05:40.298 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:05:40.298 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:05:40.308 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 21:05:40.308 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:05:40.308 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:05:40.308 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:05:40.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28720 150\n [Camera]
17-03-17 21:05:40.508 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:05:40.938 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:05:40.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:05:40.938 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:40.938 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:05:40.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:05:40.938 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:40.948 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:40.948 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:05:40.958 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:40.958 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:05:41.128 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28720 810
17-03-17 21:05:41.278 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:05:41.328 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 21:05:41.328 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 21:05:41.328 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:41.328 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:05:41.328 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:05:41.328 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:41.328 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:41.328 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:05:41.328 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:41.338 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:05:41.488 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:05:41.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:05:41.488 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:41.488 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:05:41.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:05:41.488 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:41.608 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:41.608 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:05:41.608 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:41.608 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:05:41.678 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:05:41.678 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:05:41.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28720 150' command took 2 ms to send, 1354 ms to get response, and 1363 ms overall
17-03-17 21:05:41.678 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.131208
17-03-17 21:05:41.678 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13121 mm
17-03-17 21:05:41.678 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:05:41.678 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:05:41.678 -07 000000626 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 21:05:41.678 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:41.678 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 28662, sync = True, waitForSettling = False)
17-03-17 21:05:41.678 -07 000000012 INF: Z Motor: Moving to -0.131206 mm, started at -0.130660 mm, distance = -0.55 um
17-03-17 21:05:41.688 -07 000000012 INF: FPGA: Xmit ZDACW 28662\n [Z Motor]
17-03-17 21:05:41.688 -07 000000382 INF: FPGA: Recv YRDPOS 141369
17-03-17 21:05:41.688 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 21:05:41.688 -07 000000626 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:41.688 -07 000000626 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:05:41.688 -07 000000626 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:05:41.688 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:05:41.698 -07 000000012 INF: FPGA: 'ZDACW 28662' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:41.698 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:05:41.708 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:41.708 -07 000000459 INF: FPGA: Recv ZDACR 28662
17-03-17 21:05:41.718 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:05:41.718 -07 000000012 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 21:05:41.848 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:05:41.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:05:41.988 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:05:41.988 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:05:41.988 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:41.988 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:05:41.988 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:05:41.988 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:41.988 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:41.988 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-17 21:05:41.988 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:41.998 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-17 21:05:42.068 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:05:42.068 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 21:05:42.108 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:42.108 -07 000000618 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:05:42.118 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:05:42.118 -07 000000626 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:42.118 -07 000000626 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:05:42.118 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.194 mm/sec
17-03-17 21:05:42.498 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.016692,
17-03-17 21:05:43.068 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:43.068 -07 000000476 INF: FPGA: Recv YRDPOS 143081
17-03-17 21:05:43.078 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:43.078 -07 000000626 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:43.098 -07 000000626 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:05:43.098 -07 000000626 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:05:43.098 -07 000000626 INF: Y Motor: Moved to 69.8638 after 1413 ms (table move)
17-03-17 21:05:43.098 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131206 mm (DAC = 28662)
17-03-17 21:05:43.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.108 -07 000000501 INF: FPGA: Recv ZSGSRD 29722
17-03-17 21:05:43.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:05:43.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.108 -07 000000626 INF: FPGA: Recv ZSGSRD 29709
17-03-17 21:05:43.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.118 -07 000000459 INF: FPGA: Recv ZSGSRD 29717
17-03-17 21:05:43.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.128 -07 000000627 INF: FPGA: Recv ZSGSRD 29717
17-03-17 21:05:43.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.138 -07 000000626 INF: FPGA: Recv ZSGSRD 29713
17-03-17 21:05:43.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.148 -07 000000431 INF: FPGA: Recv ZSGSRD 29717
17-03-17 21:05:43.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.158 -07 000000459 INF: FPGA: Recv ZSGSRD 29707
17-03-17 21:05:43.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.168 -07 000000626 INF: FPGA: Recv ZSGSRD 29720
17-03-17 21:05:43.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.178 -07 000000431 INF: FPGA: Recv ZSGSRD 29712
17-03-17 21:05:43.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.188 -07 000000459 INF: FPGA: Recv ZSGSRD 29715
17-03-17 21:05:43.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:43.198 -07 000000429 INF: FPGA: Recv ZPIEZORD 25467
17-03-17 21:05:43.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.208 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.374 V. Piezo Error = -9.3 V.
17-03-17 21:05:43.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29715 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29716 (-130.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29707 (-130.4 uncal um), Max = 29722 (-130.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:05:43.208 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29715, posNoise = 7, negNoise = 8
17-03-17 21:05:43.208 -07 000000610 INF: Z Motor: After move to -0.131206, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:43.208 -07 000000610 INF: Z Motor: Settle wait time = 1415 ms, measure time = 105 ms (allowed 150 ms), total time = 1520 ms
17-03-17 21:05:43.208 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:05:43.258 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 21:05:43.258 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:05:43.258 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.131218815803562. ----------
17-03-17 21:05:43.258 -07 000000610 INF: Cycle	46	Tile	13	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:05:43.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28486, sync = True, waitForSettling = True)
17-03-17 21:05:43.258 -07 000000610 INF: Z Motor: Moving to -0.130401 mm, started at -0.131219 mm, distance = 0.82 um
17-03-17 21:05:43.258 -07 000000610 INF: FPGA: Xmit ZDACW 28486\n [Z Motor]
17-03-17 21:05:43.258 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:05:43.268 -07 000000610 INF: FPGA: 'ZDACW 28486' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:05:43.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:43.268 -07 000000501 INF: FPGA: Recv ZDACR 28486
17-03-17 21:05:43.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:05:43.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.428 -07 000000618 INF: FPGA: Recv ZSGSRD 29597
17-03-17 21:05:43.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:43.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.438 -07 000000476 INF: FPGA: Recv ZSGSRD 29593
17-03-17 21:05:43.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.448 -07 000000618 INF: FPGA: Recv ZSGSRD 29587
17-03-17 21:05:43.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.458 -07 000000626 INF: FPGA: Recv ZSGSRD 29589
17-03-17 21:05:43.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:05:43.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.468 -07 000000501 INF: FPGA: Recv ZSGSRD 29594
17-03-17 21:05:43.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.478 -07 000000576 INF: FPGA: Recv ZSGSRD 29589
17-03-17 21:05:43.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.488 -07 000000626 INF: FPGA: Recv ZSGSRD 29584
17-03-17 21:05:43.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.498 -07 000000576 INF: FPGA: Recv ZSGSRD 29586
17-03-17 21:05:43.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.508 -07 000000501 INF: FPGA: Recv ZSGSRD 29593
17-03-17 21:05:43.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:43.518 -07 000000433 INF: FPGA: Recv ZSGSRD 29590
17-03-17 21:05:43.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:43.528 -07 000000576 INF: FPGA: Recv ZPIEZORD 25309
17-03-17 21:05:43.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:43.538 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -9.4 V.
17-03-17 21:05:43.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29590 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29590 (-129.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29584 (-129.6 uncal um), Max = 29597 (-129.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:05:43.538 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29590, posNoise = 7, negNoise = 6
17-03-17 21:05:43.538 -07 000000610 INF: Z Motor: After move to -0.130401, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:43.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:05:43.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:43.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:43.538 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:43.538 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:43.538 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:05:43.538 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:43.538 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:05:43.538 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:05:43.538 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:05:43.538 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:05:43.538 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:05:43.538 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:05:43.548 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:05:43.548 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:05:43.548 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:05:43.548 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:05:43.558 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:05:43.558 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:05:43.558 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:05:43.558 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:05:43.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28662 150\n [Camera]
17-03-17 21:05:43.758 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:05:44.188 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:05:44.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:05:44.188 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:44.188 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:05:44.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:05:44.188 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:44.198 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:44.198 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:05:44.198 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:44.198 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:05:44.378 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28662 810
17-03-17 21:05:44.528 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:05:44.588 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:05:44.588 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:05:44.588 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:44.588 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:44.588 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:05:44.598 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:05:44.598 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:05:44.598 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:44.598 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:44.608 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:05:44.738 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:05:44.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:05:44.738 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:44.738 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:44.738 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:05:44.738 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:05:44.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:05:44.738 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:44.738 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:44.738 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start.
17-03-17 21:05:44.928 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:05:44.928 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:05:44.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28662 150' command took 2 ms to send, 1353 ms to get response, and 1363 ms overall
17-03-17 21:05:44.928 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.130687
17-03-17 21:05:44.928 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13069 mm
17-03-17 21:05:44.928 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:05:44.928 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:05:44.928 -07 000000429 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 21:05:44.928 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:44.928 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 28549, sync = True, waitForSettling = False)
17-03-17 21:05:44.928 -07 000000618 INF: Z Motor: Moving to -0.130689 mm, started at -0.130416 mm, distance = -0.27 um
17-03-17 21:05:44.938 -07 000000618 INF: FPGA: Xmit ZDACW 28549\n [Z Motor]
17-03-17 21:05:44.938 -07 000000476 INF: FPGA: Recv YRDPOS 143081
17-03-17 21:05:44.938 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 21:05:44.938 -07 000000429 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:44.938 -07 000000429 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:05:44.938 -07 000000429 INF: Y Motor: Moving 1342 steps-19
17-03-17 21:05:44.938 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:05:44.948 -07 000000618 INF: FPGA: 'ZDACW 28549' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:44.948 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:44.948 -07 000000459 INF: FPGA: Recv ZDACR 28549
17-03-17 21:05:44.958 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:05:44.958 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:44.958 -07 000000618 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 21:05:45.118 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:05:45.118 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:05:45.118 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:45.118 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:05:45.118 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:05:45.118 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:45.118 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:45.118 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:05:45.118 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:45.128 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:05:45.328 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 21:05:45.328 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 21:05:45.368 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:45.378 -07 000000431 INF: FPGA: Recv YRDPOS 144771
17-03-17 21:05:45.378 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:05:45.378 -07 000000429 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:45.378 -07 000000429 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:05:45.378 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.839 mm, average velocity = 2.124 mm/sec
17-03-17 21:05:46.328 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:46.328 -07 000000501 INF: FPGA: Recv YRDPOS 144771
17-03-17 21:05:46.338 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:46.338 -07 000000429 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:46.358 -07 000000429 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:05:46.358 -07 000000429 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:05:46.358 -07 000000429 INF: Y Motor: Moved to 70.6890 after 1425 ms (table move)
17-03-17 21:05:46.358 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130689 mm (DAC = 28549)
17-03-17 21:05:46.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.358 -07 000000438 INF: FPGA: Recv ZSGSRD 29629
17-03-17 21:05:46.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:05:46.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.368 -07 000000433 INF: FPGA: Recv ZSGSRD 29630
17-03-17 21:05:46.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.378 -07 000000576 INF: FPGA: Recv ZSGSRD 29630
17-03-17 21:05:46.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.388 -07 000000618 INF: FPGA: Recv ZSGSRD 29641
17-03-17 21:05:46.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.398 -07 000000382 INF: FPGA: Recv ZSGSRD 29633
17-03-17 21:05:46.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.408 -07 000000459 INF: FPGA: Recv ZSGSRD 29638
17-03-17 21:05:46.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.418 -07 000000438 INF: FPGA: Recv ZSGSRD 29641
17-03-17 21:05:46.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.428 -07 000000576 INF: FPGA: Recv ZSGSRD 29630
17-03-17 21:05:46.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.438 -07 000000438 INF: FPGA: Recv ZSGSRD 29633
17-03-17 21:05:46.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.448 -07 000000382 INF: FPGA: Recv ZSGSRD 29626
17-03-17 21:05:46.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:46.458 -07 000000576 INF: FPGA: Recv ZPIEZORD 25393
17-03-17 21:05:46.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.468 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.356 V. Piezo Error = -9.3 V.
17-03-17 21:05:46.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29633 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29632 (-129.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29626 (-129.9 uncal um), Max = 29641 (-130.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:05:46.468 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29633, posNoise = 8, negNoise = 7
17-03-17 21:05:46.468 -07 000000610 INF: Z Motor: After move to -0.130689, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:46.468 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 104 ms (allowed 150 ms), total time = 1531 ms
17-03-17 21:05:46.468 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:05:46.518 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 21:05:46.518 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:05:46.518 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.130692030407937. ----------
17-03-17 21:05:46.518 -07 000000610 INF: Cycle	46	Tile	14	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:05:46.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28372, sync = True, waitForSettling = True)
17-03-17 21:05:46.518 -07 000000610 INF: Z Motor: Moving to -0.129879 mm, started at -0.130692 mm, distance = 0.81 um
17-03-17 21:05:46.518 -07 000000610 INF: FPGA: Xmit ZDACW 28372\n [Z Motor]
17-03-17 21:05:46.518 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:05:46.528 -07 000000610 INF: FPGA: 'ZDACW 28372' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:05:46.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:46.528 -07 000000501 INF: FPGA: Recv ZDACR 28372
17-03-17 21:05:46.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:05:46.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.688 -07 000000012 INF: FPGA: Recv ZSGSRD 29504
17-03-17 21:05:46.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:46.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.698 -07 000000431 INF: FPGA: Recv ZSGSRD 29504
17-03-17 21:05:46.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.708 -07 000000476 INF: FPGA: Recv ZSGSRD 29503
17-03-17 21:05:46.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.718 -07 000000431 INF: FPGA: Recv ZSGSRD 29517
17-03-17 21:05:46.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.728 -07 000000627 INF: FPGA: Recv ZSGSRD 29504
17-03-17 21:05:46.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.738 -07 000000012 INF: FPGA: Recv ZSGSRD 29505
17-03-17 21:05:46.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.748 -07 000000627 INF: FPGA: Recv ZSGSRD 29506
17-03-17 21:05:46.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.758 -07 000000618 INF: FPGA: Recv ZSGSRD 29503
17-03-17 21:05:46.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.768 -07 000000476 INF: FPGA: Recv ZSGSRD 29498
17-03-17 21:05:46.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:46.778 -07 000000627 INF: FPGA: Recv ZSGSRD 29507
17-03-17 21:05:46.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:46.788 -07 000000459 INF: FPGA: Recv ZPIEZORD 25234
17-03-17 21:05:46.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:46.798 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.329 V. Piezo Error = -9.4 V.
17-03-17 21:05:46.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29505 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29504 (-129.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 29498 (-129.0 uncal um), Max = 29517 (-129.2 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:05:46.798 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29505, posNoise = 12, negNoise = 7
17-03-17 21:05:46.798 -07 000000610 INF: Z Motor: After move to -0.129879, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:46.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 21:05:46.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:46.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:46.798 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:46.798 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:46.798 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:05:46.798 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:46.798 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:05:46.798 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:05:46.798 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:05:46.798 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:05:46.798 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:05:46.798 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:05:46.808 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:05:46.808 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:05:46.808 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:05:46.808 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:05:46.818 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 21:05:46.818 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:05:46.818 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:05:46.818 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:05:46.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28549 150\n [Camera]
17-03-17 21:05:46.848 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:05:46.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:05:47.028 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:05:47.448 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:05:47.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:05:47.448 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:47.448 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:47.448 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 21:05:47.448 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:05:47.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:05:47.458 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:47.458 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:47.458 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1059065904, 0x0, 418435064) start.
17-03-17 21:05:47.638 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28549 810
17-03-17 21:05:47.788 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:05:47.828 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:05:47.828 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:05:47.828 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:47.838 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:05:47.838 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:05:47.838 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1059065904, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 21:05:47.838 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:05:47.838 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:47.848 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:05:47.858 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.014009,
17-03-17 21:05:47.858 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 21:05:47.998 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:05:47.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:05:47.998 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:47.998 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:47.998 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1094488168, 0x0, 391868352) start.
17-03-17 21:05:47.998 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:05:47.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:05:47.998 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:47.998 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:47.998 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1129910432, 0x0, 418435064) start.
17-03-17 21:05:48.188 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:05:48.188 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:05:48.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28549 150' command took 2 ms to send, 1355 ms to get response, and 1363 ms overall
17-03-17 21:05:48.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:05:48.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129869731253792. ------
17-03-17 21:05:48.198 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:05:48.198 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13625 mm
17-03-17 21:05:48.198 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:05:48.198 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:05:48.198 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:05:48.198 -07 000000627 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 21:05:48.198 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 29765, sync = True, waitForSettling = False)
17-03-17 21:05:48.198 -07 000000459 INF: Z Motor: Moving to -0.136255 mm, started at -0.129870 mm, distance = -6.39 um
17-03-17 21:05:48.208 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:05:48.208 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:48.208 -07 000000429 INF: FPGA: Recv YRDPOS 144771
17-03-17 21:05:48.218 -07 000000459 INF: FPGA: Xmit ZDACW 29765\n [Z Motor]
17-03-17 21:05:48.218 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:05:48.218 -07 000000627 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:48.218 -07 000000627 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:05:48.218 -07 000000627 INF: Y Motor: Moving 1350 steps-28
17-03-17 21:05:48.218 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:05:48.228 -07 000000459 INF: FPGA: 'ZDACW 29765' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:05:48.228 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:05:48.238 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:05:48.248 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:48.248 -07 000000576 INF: FPGA: Recv ZDACR 29765
17-03-17 21:05:48.258 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:05:48.258 -07 000000459 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 21:05:48.378 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1129910432, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:05:48.378 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:05:48.378 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:48.378 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1094488168, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:05:48.378 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:05:48.378 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:48.378 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:05:48.378 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:48.378 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:05:48.388 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:05:48.428 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:05:48.428 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:05:48.608 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:05:48.608 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:05:48.648 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:48.648 -07 000000012 INF: FPGA: Recv YRDPOS 146471
17-03-17 21:05:48.658 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:05:48.658 -07 000000627 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:48.658 -07 000000627 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:05:48.658 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 21:05:49.608 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:49.608 -07 000000626 INF: FPGA: Recv YRDPOS 146471
17-03-17 21:05:49.618 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:49.618 -07 000000627 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:49.638 -07 000000627 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:05:49.638 -07 000000627 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:05:49.638 -07 000000627 INF: Y Motor: Moved to 71.5190 after 1437 ms (table move)
17-03-17 21:05:49.638 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136255 mm (DAC = 29765)
17-03-17 21:05:49.638 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:49.638 -07 000000576 INF: FPGA: Recv ZSGSRD 30497
17-03-17 21:05:49.648 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:05:49.648 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:49.648 -07 000000541 INF: FPGA: Recv ZSGSRD 30496
17-03-17 21:05:49.658 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:49.658 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:49.658 -07 000000459 INF: FPGA: Recv ZSGSRD 30497
17-03-17 21:05:49.668 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:49.668 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:49.668 -07 000000627 INF: FPGA: Recv ZSGSRD 30493
17-03-17 21:05:49.678 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:49.678 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:49.678 -07 000000438 INF: FPGA: Recv ZSGSRD 30498
17-03-17 21:05:49.688 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:49.688 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:49.688 -07 000000541 INF: FPGA: Recv ZSGSRD 30504
17-03-17 21:05:49.698 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:49.698 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:49.698 -07 000000459 INF: FPGA: Recv ZSGSRD 30504
17-03-17 21:05:49.708 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:49.708 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:49.708 -07 000000433 INF: FPGA: Recv ZSGSRD 30497
17-03-17 21:05:49.718 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:49.718 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:49.718 -07 000000438 INF: FPGA: Recv ZSGSRD 30497
17-03-17 21:05:49.728 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:49.728 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:49.728 -07 000000541 INF: FPGA: Recv ZSGSRD 30494
17-03-17 21:05:49.738 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:49.738 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:49.738 -07 000000459 INF: FPGA: Recv ZPIEZORD 26511
17-03-17 21:05:49.748 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:49.748 -07 000000501 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.542 V. Piezo Error = -8.8 V.
17-03-17 21:05:49.748 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30498 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30497 (-135.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30493 (-135.4 uncal um), Max = 30504 (-135.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:05:49.748 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30498, posNoise = 6, negNoise = 5
17-03-17 21:05:49.748 -07 000000501 INF: Z Motor: After move to -0.136255, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:49.748 -07 000000501 INF: Z Motor: Settle wait time = 1440 ms, measure time = 104 ms (allowed 150 ms), total time = 1544 ms
17-03-17 21:05:49.748 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:05:49.798 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 21:05:49.798 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:05:49.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:49.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:49.798 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:49.798 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:05:49.798 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:49.798 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:49.798 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:05:49.798 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:05:49.808 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:05:49.808 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:05:49.818 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:05:49.818 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:05:49.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:05:49.858 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:05:50.058 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:05:50.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:05:50.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:05:50.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:05:50.098 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:05:50.108 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 21:05:50.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 287 ms overall
17-03-17 21:05:50.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:05:50.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:50.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:05:50.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:05:50.208 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:05:50.208 -07 000000438 INF: Autofocus start
17-03-17 21:05:50.208 -07 000000438 INF: MeasureProfile start
17-03-17 21:05:50.208 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:05:50.218 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:05:50.218 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:05:50.218 -07 000000438 INF: MeasureProfile done
17-03-17 21:05:50.218 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:05:50.218 -07 000000438 INF: Autofocus finished
17-03-17 21:05:50.418 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:05:50.418 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:05:50.418 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.136248973910561. ----------
17-03-17 21:05:50.548 -07 000000610 INF: Cycle	46	Tile	15	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:05:50.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28272, sync = True, waitForSettling = True)
17-03-17 21:05:50.548 -07 000000610 INF: Z Motor: Moving to -0.129421 mm, started at -0.136249 mm, distance = 6.83 um
17-03-17 21:05:50.548 -07 000000610 INF: FPGA: Xmit ZDACW 28272\n [Z Motor]
17-03-17 21:05:50.548 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:05:50.558 -07 000000610 INF: FPGA: 'ZDACW 28272' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:05:50.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:50.558 -07 000000618 INF: FPGA: Recv ZDACR 28272
17-03-17 21:05:50.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:50.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:05:50.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:50.718 -07 000000476 INF: FPGA: Recv ZSGSRD 29431
17-03-17 21:05:50.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:50.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:50.728 -07 000000382 INF: FPGA: Recv ZSGSRD 29435
17-03-17 21:05:50.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:50.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:50.738 -07 000000576 INF: FPGA: Recv ZSGSRD 29430
17-03-17 21:05:50.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:50.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:50.748 -07 000000626 INF: FPGA: Recv ZSGSRD 29436
17-03-17 21:05:50.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:50.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:50.758 -07 000000627 INF: FPGA: Recv ZSGSRD 29437
17-03-17 21:05:50.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:50.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:50.768 -07 000000618 INF: FPGA: Recv ZSGSRD 29435
17-03-17 21:05:50.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:50.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:50.778 -07 000000012 INF: FPGA: Recv ZSGSRD 29439
17-03-17 21:05:50.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:50.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:50.788 -07 000000382 INF: FPGA: Recv ZSGSRD 29434
17-03-17 21:05:50.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:50.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:50.798 -07 000000431 INF: FPGA: Recv ZSGSRD 29430
17-03-17 21:05:50.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:50.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:50.808 -07 000000476 INF: FPGA: Recv ZSGSRD 29434
17-03-17 21:05:50.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:50.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:50.818 -07 000000541 INF: FPGA: Recv ZPIEZORD 25150
17-03-17 21:05:50.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:50.828 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.314 V. Piezo Error = -9.4 V.
17-03-17 21:05:50.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29434 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29434 (-128.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29430 (-128.6 uncal um), Max = 29439 (-128.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:05:50.828 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29434, posNoise = 5, negNoise = 4
17-03-17 21:05:50.828 -07 000000610 INF: Z Motor: After move to -0.129421, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:50.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:05:50.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:50.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:50.828 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:05:50.828 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:50.828 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:50.828 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:05:50.828 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:05:50.828 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:50.828 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:05:50.828 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:05:50.828 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:05:50.828 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:05:50.838 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:05:50.838 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:05:50.838 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:05:50.838 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:05:50.848 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:05:50.848 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:05:50.848 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:05:50.848 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:05:50.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28449 150\n [Camera]
17-03-17 21:05:51.048 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:05:51.478 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:05:51.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:05:51.478 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:51.478 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:05:51.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:05:51.478 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:51.478 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:51.478 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:05:51.478 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:51.478 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:05:51.668 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28449 810
17-03-17 21:05:51.818 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:05:51.848 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:05:51.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:05:51.858 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:05:51.858 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:05:51.858 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:51.858 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:05:51.858 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:05:51.858 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:51.868 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:05:51.868 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:05:51.868 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:05:51.868 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:05:52.018 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:05:52.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:05:52.018 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:52.018 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:52.018 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start.
17-03-17 21:05:52.028 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:05:52.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:05:52.028 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:52.028 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:52.028 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 21:05:52.208 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:05:52.208 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:05:52.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28449 150' command took 2 ms to send, 1359 ms to get response, and 1363 ms overall
17-03-17 21:05:52.218 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.129591
17-03-17 21:05:52.218 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12959 mm
17-03-17 21:05:52.218 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:05:52.218 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:05:52.218 -07 000000541 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 21:05:52.218 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:52.218 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 28309, sync = True, waitForSettling = False)
17-03-17 21:05:52.218 -07 000000476 INF: Z Motor: Moving to -0.129590 mm, started at -0.129414 mm, distance = -0.18 um
17-03-17 21:05:52.218 -07 000000433 INF: FPGA: Recv YRDPOS 146472
17-03-17 21:05:52.228 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:05:52.228 -07 000000541 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:52.228 -07 000000476 INF: FPGA: Xmit ZDACW 28309\n [Z Motor]
17-03-17 21:05:52.228 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:05:52.348 -07 000000476 INF: FPGA: 'ZDACW 28309' command took 0 ms to send, 0 ms to get response, and 126 ms overall
17-03-17 21:05:52.348 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:52.348 -07 000000541 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:05:52.348 -07 000000541 INF: Y Motor: Moving 1349 steps-28
17-03-17 21:05:52.348 -07 000000431 INF: FPGA: Recv ZDACR 28309
17-03-17 21:05:52.358 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:05:52.358 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:05:52.358 -07 000000476 INF: Z Motor: MoveAbsStepped took 135 ms (did NOT wait for settling yet))
17-03-17 21:05:52.398 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:05:52.398 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:05:52.398 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:52.408 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:05:52.408 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:05:52.408 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:52.408 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:52.408 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:05:52.408 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:05:52.418 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:05:52.728 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 21:05:52.728 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 21:05:52.768 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:52.778 -07 000000431 INF: FPGA: Recv YRDPOS 148172
17-03-17 21:05:52.778 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:05:52.778 -07 000000541 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:52.778 -07 000000541 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 21:05:52.778 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.180 mm/sec
17-03-17 21:05:53.218 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 3.996267,
17-03-17 21:05:53.728 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:53.728 -07 000000433 INF: FPGA: Recv YRDPOS 148172
17-03-17 21:05:53.738 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:53.738 -07 000000541 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:53.758 -07 000000541 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:05:53.758 -07 000000541 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:05:53.758 -07 000000541 INF: Y Motor: Moved to 72.3496 after 1540 ms (table move)
17-03-17 21:05:53.758 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129590 mm (DAC = 28309)
17-03-17 21:05:53.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:53.758 -07 000000618 INF: FPGA: Recv ZSGSRD 29455
17-03-17 21:05:53.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:05:53.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:53.768 -07 000000429 INF: FPGA: Recv ZSGSRD 29462
17-03-17 21:05:53.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:53.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:53.778 -07 000000012 INF: FPGA: Recv ZSGSRD 29467
17-03-17 21:05:53.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:53.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:53.788 -07 000000476 INF: FPGA: Recv ZSGSRD 29471
17-03-17 21:05:53.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:53.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:53.798 -07 000000429 INF: FPGA: Recv ZSGSRD 29465
17-03-17 21:05:53.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:53.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:53.808 -07 000000012 INF: FPGA: Recv ZSGSRD 29458
17-03-17 21:05:53.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:53.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:53.818 -07 000000476 INF: FPGA: Recv ZSGSRD 29467
17-03-17 21:05:53.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:53.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:53.828 -07 000000429 INF: FPGA: Recv ZSGSRD 29457
17-03-17 21:05:53.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:53.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:53.838 -07 000000476 INF: FPGA: Recv ZSGSRD 29455
17-03-17 21:05:53.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:53.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:53.848 -07 000000431 INF: FPGA: Recv ZSGSRD 29461
17-03-17 21:05:53.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:53.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:53.858 -07 000000429 INF: FPGA: Recv ZPIEZORD 25237
17-03-17 21:05:53.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:53.868 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.320 V. Piezo Error = -9.3 V.
17-03-17 21:05:53.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29462 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29462 (-128.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29455 (-128.8 uncal um), Max = 29471 (-128.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:05:53.868 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29462, posNoise = 9, negNoise = 7
17-03-17 21:05:53.868 -07 000000610 INF: Z Motor: After move to -0.129590, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:53.868 -07 000000610 INF: Z Motor: Settle wait time = 1541 ms, measure time = 104 ms (allowed 150 ms), total time = 1645 ms
17-03-17 21:05:53.868 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:05:53.918 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1698 ms
17-03-17 21:05:53.918 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:05:53.918 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.129593490131696. ----------
17-03-17 21:05:53.918 -07 000000610 INF: Cycle	46	Tile	16	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:05:53.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28132, sync = True, waitForSettling = True)
17-03-17 21:05:53.918 -07 000000610 INF: Z Motor: Moving to -0.128780 mm, started at -0.129593 mm, distance = 0.81 um
17-03-17 21:05:53.918 -07 000000610 INF: FPGA: Xmit ZDACW 28132\n [Z Motor]
17-03-17 21:05:53.918 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:05:53.928 -07 000000610 INF: FPGA: 'ZDACW 28132' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:05:53.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:53.928 -07 000000627 INF: FPGA: Recv ZDACR 28132
17-03-17 21:05:53.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:53.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:05:54.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:54.088 -07 000000429 INF: FPGA: Recv ZSGSRD 29338
17-03-17 21:05:54.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:54.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:54.098 -07 000000618 INF: FPGA: Recv ZSGSRD 29339
17-03-17 21:05:54.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:54.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:54.108 -07 000000541 INF: FPGA: Recv ZSGSRD 29336
17-03-17 21:05:54.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:54.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:54.118 -07 000000438 INF: FPGA: Recv ZSGSRD 29335
17-03-17 21:05:54.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:54.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:54.128 -07 000000541 INF: FPGA: Recv ZSGSRD 29343
17-03-17 21:05:54.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:54.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:54.138 -07 000000627 INF: FPGA: Recv ZSGSRD 29336
17-03-17 21:05:54.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:54.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:54.148 -07 000000618 INF: FPGA: Recv ZSGSRD 29337
17-03-17 21:05:54.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:54.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:54.158 -07 000000012 INF: FPGA: Recv ZSGSRD 29327
17-03-17 21:05:54.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:54.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:54.168 -07 000000541 INF: FPGA: Recv ZSGSRD 29341
17-03-17 21:05:54.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:54.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:54.178 -07 000000618 INF: FPGA: Recv ZSGSRD 29340
17-03-17 21:05:54.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:54.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:54.188 -07 000000382 INF: FPGA: Recv ZPIEZORD 25057
17-03-17 21:05:54.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:54.198 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.293 V. Piezo Error = -9.4 V.
17-03-17 21:05:54.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29337 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29338 (-128.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29327 (-128.0 uncal um), Max = 29343 (-128.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:05:54.198 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29337, posNoise = 6, negNoise = 10
17-03-17 21:05:54.198 -07 000000610 INF: Z Motor: After move to -0.128780, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:54.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 21:05:54.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:54.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:54.198 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:54.198 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:54.198 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:05:54.198 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:54.198 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:05:54.198 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:05:54.198 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:05:54.198 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:05:54.198 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:05:54.198 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:05:54.208 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:05:54.208 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:05:54.208 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:05:54.208 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:05:54.218 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:05:54.218 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:05:54.218 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:05:54.218 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:05:54.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28309 150\n [Camera]
17-03-17 21:05:54.418 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:05:54.838 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:05:54.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:05:54.848 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:54.848 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:05:54.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:05:54.848 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:54.848 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:54.848 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:05:54.848 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:54.848 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:05:55.038 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28309 810
17-03-17 21:05:55.188 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:05:55.218 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:05:55.228 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:05:55.228 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:55.228 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 21:05:55.228 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 21:05:55.228 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:55.228 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:55.228 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:55.228 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:05:55.238 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:05:55.388 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:05:55.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:05:55.388 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:55.388 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:55.388 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1059065904, 0x0, 391868352) start.
17-03-17 21:05:55.388 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:05:55.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:05:55.388 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:55.388 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:55.388 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1094488168, 0x0, 418435064) start.
17-03-17 21:05:55.578 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-17 21:05:55.578 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:05:55.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28309 150' command took 2 ms to send, 1358 ms to get response, and 1364 ms overall
17-03-17 21:05:55.578 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.129269
17-03-17 21:05:55.588 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.12927 mm
17-03-17 21:05:55.588 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:05:55.588 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:05:55.588 -07 000000459 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 21:05:55.588 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:55.588 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 28239, sync = True, waitForSettling = False)
17-03-17 21:05:55.588 -07 000000576 INF: Z Motor: Moving to -0.129270 mm, started at -0.128790 mm, distance = -0.48 um
17-03-17 21:05:55.588 -07 000000626 INF: FPGA: Recv YRDPOS 148172
17-03-17 21:05:55.598 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:05:55.598 -07 000000459 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:55.598 -07 000000459 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:05:55.598 -07 000000459 INF: Y Motor: Moving 1349 steps-27
17-03-17 21:05:55.598 -07 000000576 INF: FPGA: Xmit ZDACW 28239\n [Z Motor]
17-03-17 21:05:55.598 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:05:55.608 -07 000000576 INF: FPGA: 'ZDACW 28239' command took 3 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:05:55.608 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:05:55.618 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:55.618 -07 000000541 INF: FPGA: Recv ZDACR 28239
17-03-17 21:05:55.628 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:05:55.628 -07 000000576 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 21:05:55.788 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1059065904, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:05:55.788 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:05:55.788 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:55.798 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1094488168, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:05:55.798 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:05:55.798 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:55.798 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:55.798 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:05:55.798 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:05:55.808 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:05:55.978 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:05:55.978 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 21:05:56.018 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:56.028 -07 000000627 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:05:56.028 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:05:56.028 -07 000000459 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:56.028 -07 000000459 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 21:05:56.028 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.173 mm/sec
17-03-17 21:05:56.848 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:05:56.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:05:56.978 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:56.978 -07 000000541 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:05:56.988 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:56.988 -07 000000459 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:57.008 -07 000000459 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:05:57.008 -07 000000459 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:05:57.008 -07 000000459 INF: Y Motor: Moved to 73.1763 after 1421 ms (table move)
17-03-17 21:05:57.008 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129270 mm (DAC = 28239)
17-03-17 21:05:57.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.008 -07 000000012 INF: FPGA: Recv ZSGSRD 29412
17-03-17 21:05:57.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:05:57.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.018 -07 000000459 INF: FPGA: Recv ZSGSRD 29411
17-03-17 21:05:57.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.028 -07 000000627 INF: FPGA: Recv ZSGSRD 29410
17-03-17 21:05:57.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.038 -07 000000382 INF: FPGA: Recv ZSGSRD 29413
17-03-17 21:05:57.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.048 -07 000000433 INF: FPGA: Recv ZSGSRD 29423
17-03-17 21:05:57.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.058 -07 000000429 INF: FPGA: Recv ZSGSRD 29416
17-03-17 21:05:57.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.068 -07 000000012 INF: FPGA: Recv ZSGSRD 29409
17-03-17 21:05:57.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.078 -07 000000438 INF: FPGA: Recv ZSGSRD 29408
17-03-17 21:05:57.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.088 -07 000000626 INF: FPGA: Recv ZSGSRD 29409
17-03-17 21:05:57.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.098 -07 000000459 INF: FPGA: Recv ZSGSRD 29412
17-03-17 21:05:57.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:57.108 -07 000000438 INF: FPGA: Recv ZPIEZORD 25165
17-03-17 21:05:57.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.118 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.309 V. Piezo Error = -9.3 V.
17-03-17 21:05:57.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29412 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29412 (-128.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29408 (-128.5 uncal um), Max = 29423 (-128.6 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:05:57.118 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29412, posNoise = 11, negNoise = 4
17-03-17 21:05:57.118 -07 000000610 INF: Z Motor: After move to -0.129270, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:57.118 -07 000000610 INF: Z Motor: Settle wait time = 1423 ms, measure time = 104 ms (allowed 150 ms), total time = 1527 ms
17-03-17 21:05:57.118 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:05:57.168 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1579 ms
17-03-17 21:05:57.168 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:05:57.168 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.129272279524608. ----------
17-03-17 21:05:57.168 -07 000000610 INF: Cycle	46	Tile	17	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:05:57.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28062, sync = True, waitForSettling = True)
17-03-17 21:05:57.168 -07 000000610 INF: Z Motor: Moving to -0.128460 mm, started at -0.129272 mm, distance = 0.81 um
17-03-17 21:05:57.168 -07 000000610 INF: FPGA: Xmit ZDACW 28062\n [Z Motor]
17-03-17 21:05:57.168 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:05:57.178 -07 000000610 INF: FPGA: 'ZDACW 28062' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:05:57.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:57.178 -07 000000618 INF: FPGA: Recv ZDACR 28062
17-03-17 21:05:57.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:05:57.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.338 -07 000000438 INF: FPGA: Recv ZSGSRD 29291
17-03-17 21:05:57.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:05:57.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.348 -07 000000459 INF: FPGA: Recv ZSGSRD 29287
17-03-17 21:05:57.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.358 -07 000000627 INF: FPGA: Recv ZSGSRD 29289
17-03-17 21:05:57.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.368 -07 000000541 INF: FPGA: Recv ZSGSRD 29284
17-03-17 21:05:57.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.378 -07 000000433 INF: FPGA: Recv ZSGSRD 29296
17-03-17 21:05:57.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.388 -07 000000626 INF: FPGA: Recv ZSGSRD 29293
17-03-17 21:05:57.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.398 -07 000000576 INF: FPGA: Recv ZSGSRD 29286
17-03-17 21:05:57.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.408 -07 000000431 INF: FPGA: Recv ZSGSRD 29286
17-03-17 21:05:57.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.418 -07 000000438 INF: FPGA: Recv ZSGSRD 29293
17-03-17 21:05:57.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:05:57.428 -07 000000626 INF: FPGA: Recv ZSGSRD 29285
17-03-17 21:05:57.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:05:57.438 -07 000000012 INF: FPGA: Recv ZPIEZORD 24977
17-03-17 21:05:57.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:57.448 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.282 V. Piezo Error = -9.5 V.
17-03-17 21:05:57.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29289 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29288 (-127.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29284 (-127.7 uncal um), Max = 29296 (-127.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:05:57.448 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29289, posNoise = 7, negNoise = 5
17-03-17 21:05:57.448 -07 000000610 INF: Z Motor: After move to -0.128460, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:05:57.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 21:05:57.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:05:57.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:05:57.448 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:05:57.448 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:05:57.448 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:05:57.448 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:05:57.448 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:05:57.448 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:05:57.448 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:05:57.448 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:05:57.448 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:05:57.448 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:05:57.458 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:05:57.458 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:05:57.458 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:05:57.458 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:05:57.468 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:05:57.468 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:05:57.468 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:05:57.468 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:05:57.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28239 150\n [Camera]
17-03-17 21:05:57.668 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:05:58.098 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:05:58.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:05:58.098 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:58.098 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:58.098 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1129910432, 0x0, 391868352) start.
17-03-17 21:05:58.098 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:05:58.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:05:58.098 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:58.098 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:58.098 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:05:58.288 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28239 810
17-03-17 21:05:58.438 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:05:58.468 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:05:58.468 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:05:58.468 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:58.468 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1129910432, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:05:58.468 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:05:58.468 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:58.478 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:58.478 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:05:58.478 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:05:58.488 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:05:58.578 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.000345,
17-03-17 21:05:58.638 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:05:58.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:05:58.638 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:05:58.638 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:05:58.638 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:05:58.648 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:05:58.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:05:58.648 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:05:58.648 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:05:58.648 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:05:58.828 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-17 21:05:58.828 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:05:58.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28239 150' command took 2 ms to send, 1359 ms to get response, and 1365 ms overall
17-03-17 21:05:58.838 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.128810
17-03-17 21:05:58.838 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.12881 mm
17-03-17 21:05:58.838 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:05:58.838 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:05:58.838 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 28138, sync = True, waitForSettling = False)
17-03-17 21:05:58.838 -07 000000438 INF: Z Motor: Moving to -0.128808 mm, started at -0.128482 mm, distance = -0.33 um
17-03-17 21:05:58.838 -07 000000438 INF: FPGA: Xmit ZDACW 28138\n [Z Motor]
17-03-17 21:05:58.838 -07 000000576 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 21:05:58.838 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:05:58.848 -07 000000438 INF: FPGA: 'ZDACW 28138' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:05:58.848 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:05:58.848 -07 000000627 INF: FPGA: Recv ZDACR 28138
17-03-17 21:05:58.858 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:58.858 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:58.858 -07 000000438 INF: Z Motor: MoveAbsStepped took 15 ms (did NOT wait for settling yet))
17-03-17 21:05:58.858 -07 000000627 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:05:58.868 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:05:58.868 -07 000000576 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:58.868 -07 000000576 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:05:58.868 -07 000000576 INF: Y Motor: Moving 1354 steps-33
17-03-17 21:05:58.868 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:05:59.028 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 21:05:59.028 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:05:59.028 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:59.028 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 21:05:59.028 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:05:59.028 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:05:59.038 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:05:59.038 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:05:59.038 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:05:59.048 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:05:59.238 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:05:59.238 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-17 21:05:59.278 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:05:59.278 -07 000000431 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:05:59.288 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:05:59.288 -07 000000576 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:05:59.288 -07 000000576 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:05:59.288 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.846 mm, average velocity = 2.239 mm/sec
17-03-17 21:06:00.238 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:06:00.238 -07 000000433 INF: FPGA: Recv YRDPOS 151569
17-03-17 21:06:00.248 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.248 -07 000000576 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:06:00.258 -07 000000576 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:06:00.258 -07 000000576 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:06:00.258 -07 000000576 INF: Y Motor: Moved to 74.0083 after 1422 ms (table move)
17-03-17 21:06:00.258 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128808 mm (DAC = 28138)
17-03-17 21:06:00.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.268 -07 000000618 INF: FPGA: Recv ZSGSRD 29340
17-03-17 21:06:00.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:06:00.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.278 -07 000000431 INF: FPGA: Recv ZSGSRD 29341
17-03-17 21:06:00.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.288 -07 000000618 INF: FPGA: Recv ZSGSRD 29345
17-03-17 21:06:00.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.298 -07 000000431 INF: FPGA: Recv ZSGSRD 29346
17-03-17 21:06:00.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.308 -07 000000012 INF: FPGA: Recv ZSGSRD 29336
17-03-17 21:06:00.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.318 -07 000000429 INF: FPGA: Recv ZSGSRD 29335
17-03-17 21:06:00.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.328 -07 000000431 INF: FPGA: Recv ZSGSRD 29343
17-03-17 21:06:00.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.338 -07 000000626 INF: FPGA: Recv ZSGSRD 29341
17-03-17 21:06:00.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.348 -07 000000541 INF: FPGA: Recv ZSGSRD 29335
17-03-17 21:06:00.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.358 -07 000000576 INF: FPGA: Recv ZSGSRD 29342
17-03-17 21:06:00.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:06:00.368 -07 000000541 INF: FPGA: Recv ZPIEZORD 25116
17-03-17 21:06:00.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.378 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.294 V. Piezo Error = -9.3 V.
17-03-17 21:06:00.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29340 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29341 (-128.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29335 (-128.0 uncal um), Max = 29346 (-128.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:06:00.378 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29340, posNoise = 6, negNoise = 5
17-03-17 21:06:00.378 -07 000000610 INF: Z Motor: After move to -0.128808, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:06:00.378 -07 000000610 INF: Z Motor: Settle wait time = 1425 ms, measure time = 110 ms (allowed 150 ms), total time = 1535 ms
17-03-17 21:06:00.378 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 21:06:00.418 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1577 ms
17-03-17 21:06:00.418 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:06:00.418 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.128809736250401. ----------
17-03-17 21:06:00.418 -07 000000610 INF: Cycle	46	Tile	18	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:06:00.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27962, sync = True, waitForSettling = True)
17-03-17 21:06:00.418 -07 000000610 INF: Z Motor: Moving to -0.128002 mm, started at -0.128810 mm, distance = 0.81 um
17-03-17 21:06:00.418 -07 000000610 INF: FPGA: Xmit ZDACW 27962\n [Z Motor]
17-03-17 21:06:00.418 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:06:00.428 -07 000000610 INF: FPGA: 'ZDACW 27962' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:06:00.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:06:00.428 -07 000000012 INF: FPGA: Recv ZDACR 27962
17-03-17 21:06:00.438 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:06:00.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.588 -07 000000438 INF: FPGA: Recv ZSGSRD 29210
17-03-17 21:06:00.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:06:00.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.598 -07 000000627 INF: FPGA: Recv ZSGSRD 29219
17-03-17 21:06:00.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.608 -07 000000012 INF: FPGA: Recv ZSGSRD 29215
17-03-17 21:06:00.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.618 -07 000000618 INF: FPGA: Recv ZSGSRD 29214
17-03-17 21:06:00.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.628 -07 000000382 INF: FPGA: Recv ZSGSRD 29210
17-03-17 21:06:00.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.638 -07 000000626 INF: FPGA: Recv ZSGSRD 29216
17-03-17 21:06:00.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.648 -07 000000618 INF: FPGA: Recv ZSGSRD 29210
17-03-17 21:06:00.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.658 -07 000000433 INF: FPGA: Recv ZSGSRD 29213
17-03-17 21:06:00.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.668 -07 000000382 INF: FPGA: Recv ZSGSRD 29209
17-03-17 21:06:00.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:00.678 -07 000000433 INF: FPGA: Recv ZSGSRD 29223
17-03-17 21:06:00.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:06:00.688 -07 000000627 INF: FPGA: Recv ZPIEZORD 24952
17-03-17 21:06:00.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:00.698 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.267 V. Piezo Error = -9.4 V.
17-03-17 21:06:00.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29214 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29214 (-127.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29209 (-127.2 uncal um), Max = 29223 (-127.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:06:00.698 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29214, posNoise = 9, negNoise = 5
17-03-17 21:06:00.698 -07 000000610 INF: Z Motor: After move to -0.128002, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:06:00.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:06:00.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:06:00.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:06:00.698 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:06:00.698 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:06:00.698 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:06:00.698 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:06:00.698 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:06:00.698 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:06:00.698 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:06:00.698 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:06:00.698 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:06:00.698 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:06:00.698 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:06:00.698 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:06:00.698 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:06:00.698 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:06:00.718 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:06:00.718 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:06:00.718 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:06:00.718 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:06:00.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28138 150\n [Camera]
17-03-17 21:06:00.918 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:06:01.348 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:06:01.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:06:01.348 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:06:01.348 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:06:01.348 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:06:01.348 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:06:01.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:06:01.348 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:06:01.348 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:06:01.348 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:06:01.538 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28138 810
17-03-17 21:06:01.688 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:06:01.738 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:06:01.738 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:06:01.738 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:06:01.738 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:06:01.738 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:06:01.738 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:06:01.748 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:06:01.748 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:06:01.748 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:06:01.748 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:06:01.848 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:06:01.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 45. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:06:01.898 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:06:01.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:06:01.898 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:06:01.898 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:06:01.898 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 21:06:01.898 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:06:01.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:06:01.898 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:06:01.898 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:06:01.898 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:06:02.088 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1357
17-03-17 21:06:02.088 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:06:02.088 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28138 150' command took 2 ms to send, 1353 ms to get response, and 1363 ms overall
17-03-17 21:06:02.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:06:02.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.12800028552054. ------
17-03-17 21:06:02.088 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:06:02.098 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13440 mm
17-03-17 21:06:02.098 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:06:02.098 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:06:02.098 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:06:02.098 -07 000000431 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 21:06:02.098 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29361, sync = True, waitForSettling = False)
17-03-17 21:06:02.098 -07 000000618 INF: Z Motor: Moving to -0.134406 mm, started at -0.128000 mm, distance = -6.41 um
17-03-17 21:06:02.108 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:06:02.108 -07 000000618 INF: FPGA: Xmit ZDACW 29361\n [Z Motor]
17-03-17 21:06:02.108 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:06:02.118 -07 000000618 INF: FPGA: 'ZDACW 29361' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:06:02.118 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:06:02.118 -07 000000433 INF: FPGA: Recv YRDPOS 151569
17-03-17 21:06:02.128 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:06:02.128 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:06:02.128 -07 000000431 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:06:02.128 -07 000000431 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:06:02.128 -07 000000431 INF: Y Motor: Moving 1351 steps-30
17-03-17 21:06:02.138 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:06:02.138 -07 000000433 INF: FPGA: Recv ZDACR 29361
17-03-17 21:06:02.148 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:06:02.148 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:06:02.148 -07 000000618 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 21:06:02.278 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:06:02.278 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:06:02.278 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:06:02.278 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:06:02.278 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:06:02.278 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:06:02.278 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:06:02.278 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:06:02.278 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:06:02.288 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:06:02.328 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:06:02.328 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:06:02.518 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 21:06:02.518 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:06:02.548 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:06:02.548 -07 000000438 INF: FPGA: Recv YRDPOS 153256
17-03-17 21:06:02.558 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:06:02.558 -07 000000431 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:06:02.558 -07 000000431 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 21:06:02.558 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.127 mm/sec
17-03-17 21:06:03.508 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:06:03.508 -07 000000627 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:06:03.518 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:06:03.518 -07 000000431 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:06:03.528 -07 000000431 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:06:03.528 -07 000000431 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:06:03.528 -07 000000431 INF: Y Motor: Moved to 74.8325 after 1433 ms (table move)
17-03-17 21:06:03.538 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134406 mm (DAC = 29361)
17-03-17 21:06:03.538 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:03.538 -07 000000429 INF: FPGA: Recv ZSGSRD 30214
17-03-17 21:06:03.548 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:03.548 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:03.548 -07 000000431 INF: FPGA: Recv ZSGSRD 30205
17-03-17 21:06:03.558 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:03.558 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:03.558 -07 000000429 INF: FPGA: Recv ZSGSRD 30212
17-03-17 21:06:03.568 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:03.568 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:03.568 -07 000000431 INF: FPGA: Recv ZSGSRD 30202
17-03-17 21:06:03.578 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:03.578 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:03.578 -07 000000012 INF: FPGA: Recv ZSGSRD 30208
17-03-17 21:06:03.588 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:03.588 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:03.588 -07 000000431 INF: FPGA: Recv ZSGSRD 30218
17-03-17 21:06:03.598 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:03.598 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:03.598 -07 000000012 INF: FPGA: Recv ZSGSRD 30224
17-03-17 21:06:03.608 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:03.608 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:03.608 -07 000000431 INF: FPGA: Recv ZSGSRD 30200
17-03-17 21:06:03.618 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:03.628 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:03.628 -07 000000459 INF: FPGA: Recv ZSGSRD 30211
17-03-17 21:06:03.638 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:06:03.638 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:03.638 -07 000000431 INF: FPGA: Recv ZSGSRD 30211
17-03-17 21:06:03.648 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:03.648 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:06:03.648 -07 000000429 INF: FPGA: Recv ZPIEZORD 26260
17-03-17 21:06:03.658 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:03.658 -07 000000541 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.480 V. Piezo Error = -8.7 V.
17-03-17 21:06:03.658 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30210 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30211 (-133.6 uncal um), StdDev = 7 (0.0 uncal um), Range = 24 (0.2 uncal um), Min = 30200 (-133.5 uncal um), Max = 30224 (-133.7 uncal um), Pos Noise = 14 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:06:03.658 -07 000000541 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30210, posNoise = 14, negNoise = 10
17-03-17 21:06:03.658 -07 000000541 INF: Z Motor: After move to -0.134406, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:06:03.658 -07 000000541 INF: Z Motor: Settle wait time = 1436 ms, measure time = 122 ms (allowed 150 ms), total time = 1558 ms
17-03-17 21:06:03.658 -07 000000541 INF: Z Motor: Waiting extra 28 ms after reading position to reach expected total of 150 ms
17-03-17 21:06:03.688 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 21:06:03.688 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:06:03.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:06:03.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:06:03.688 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:06:03.688 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:06:03.688 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:06:03.688 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:06:03.688 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:06:03.688 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:06:03.698 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:06:03.698 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:06:03.708 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:06:03.708 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:06:03.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:06:03.758 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:06:03.938 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.018051,
17-03-17 21:06:03.958 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:06:03.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:06:03.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:06:03.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:06:03.998 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:06:03.998 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 21:06:03.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 21:06:04.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:06:04.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:06:04.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:06:04.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:06:04.098 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:06:04.098 -07 000000431 INF: Autofocus start
17-03-17 21:06:04.098 -07 000000431 INF: MeasureProfile start
17-03-17 21:06:04.098 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:06:04.108 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:06:04.108 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:06:04.108 -07 000000431 INF: MeasureProfile done
17-03-17 21:06:04.108 -07 000000431 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:06:04.108 -07 000000431 INF: Autofocus finished
17-03-17 21:06:04.308 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:06:04.308 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 21:06:04.308 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134398800813734. ----------
17-03-17 21:06:04.318 -07 000000610 INF: Cycle	46	Tile	19	Exposure Settings		A	425	G	204	T	204	C	425
17-03-17 21:06:04.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27885, sync = True, waitForSettling = True)
17-03-17 21:06:04.318 -07 000000610 INF: Z Motor: Moving to -0.127649 mm, started at -0.134399 mm, distance = 6.75 um
17-03-17 21:06:04.318 -07 000000610 INF: FPGA: Xmit ZDACW 27885\n [Z Motor]
17-03-17 21:06:04.318 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:06:04.328 -07 000000610 INF: FPGA: 'ZDACW 27885' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:06:04.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:06:04.328 -07 000000438 INF: FPGA: Recv ZDACR 27885
17-03-17 21:06:04.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:06:04.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:06:04.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:04.488 -07 000000626 INF: FPGA: Recv ZSGSRD 29158
17-03-17 21:06:04.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:06:04.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:04.498 -07 000000476 INF: FPGA: Recv ZSGSRD 29162
17-03-17 21:06:04.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:04.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:04.508 -07 000000431 INF: FPGA: Recv ZSGSRD 29156
17-03-17 21:06:04.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:04.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:04.518 -07 000000459 INF: FPGA: Recv ZSGSRD 29156
17-03-17 21:06:04.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:04.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:04.528 -07 000000012 INF: FPGA: Recv ZSGSRD 29167
17-03-17 21:06:04.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:04.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:04.538 -07 000000626 INF: FPGA: Recv ZSGSRD 29159
17-03-17 21:06:04.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:04.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:04.548 -07 000000576 INF: FPGA: Recv ZSGSRD 29160
17-03-17 21:06:04.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:04.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:04.558 -07 000000012 INF: FPGA: Recv ZSGSRD 29161
17-03-17 21:06:04.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:04.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:04.568 -07 000000576 INF: FPGA: Recv ZSGSRD 29155
17-03-17 21:06:04.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:04.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:06:04.578 -07 000000012 INF: FPGA: Recv ZSGSRD 29162
17-03-17 21:06:04.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:04.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:06:04.588 -07 000000429 INF: FPGA: Recv ZPIEZORD 24860
17-03-17 21:06:04.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:04.598 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.255 V. Piezo Error = -9.4 V.
17-03-17 21:06:04.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29160 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29160 (-126.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29155 (-126.8 uncal um), Max = 29167 (-126.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:06:04.598 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29160, posNoise = 7, negNoise = 5
17-03-17 21:06:04.598 -07 000000610 INF: Z Motor: After move to -0.127649, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:06:04.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:06:04.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:06:04.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:06:04.598 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:06:04.598 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:06:04.598 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:06:04.598 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:06:04.598 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:06:04.598 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:06:04.598 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:06:04.598 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:06:04.598 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:06:04.598 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:06:04.608 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:06:04.608 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:06:04.608 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:06:04.608 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:06:04.618 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:06:04.618 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:06:04.618 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:06:04.618 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:06:04.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 425 425 204 204 28061 150\n [Camera]
17-03-17 21:06:04.818 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:06:05.238 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 617
17-03-17 21:06:05.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 617
17-03-17 21:06:05.238 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:06:05.238 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:06:05.238 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 21:06:05.248 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 617
17-03-17 21:06:05.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 617
17-03-17 21:06:05.248 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:06:05.248 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:06:05.248 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 21:06:05.438 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28061 810
17-03-17 21:06:05.588 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 960
17-03-17 21:06:05.618 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:06:05.618 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:06:05.618 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:06:05.618 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:06:05.618 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:06:05.618 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:06:05.628 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:06:05.628 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:06:05.628 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:06:05.638 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:06:05.788 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1164
17-03-17 21:06:05.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1164
17-03-17 21:06:05.788 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:06:05.788 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:06:05.788 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 21:06:05.788 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1164
17-03-17 21:06:05.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1164
17-03-17 21:06:05.788 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:06:05.788 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:06:05.788 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 21:06:05.978 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1356
17-03-17 21:06:05.978 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:06:05.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 425 425 204 204 28061 150' command took 2 ms to send, 1357 ms to get response, and 1363 ms overall
17-03-17 21:06:06.188 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:06:06.188 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:06:06.188 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:06:06.188 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:06:06.188 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:06:06.188 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:06:06.198 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 21:06:06.198 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:06:06.198 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:06:06.198 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:06:06.208 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 21:06:06.238 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 21:06:06.238 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:06:06.278 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 21:06:06.288 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 21:06:06.288 -07 000000610 INF: Imaging Cycle 46: ScanTilesCommand Cycle 46 time end. Duration was 140786 ms.
17-03-17 21:06:06.288 -07 000000610 INF: =================== Cycle #46 ===================
17-03-17 21:06:06.288 -07 000000610 INF: ===================  ===================
17-03-17 21:06:06.298 -07 000000576 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:06:06.298 -07 000000459 INF: FPGA: Recv EXLED1ADCR 25
17-03-17 21:06:06.308 -07 000000576 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:06.308 -07 000000576 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-17 21:06:06.308 -07 000000576 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 46, FrontChillerTemperature: 4.018051, FrontChillerHeatSinkTemperature: 0.211325, AmbientTemperature: 19.08448, FlowCellCompartmentTemperature: 21.99399, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 19.06989, GreenLEDSensorTemperature: 25.49411, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-17 21:06:06.338 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.