17-03-17 21:06:06.388 -07 000000610 INF: =================== Cycle #47 ===================
17-03-17 21:06:06.388 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 21:06:06.388 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 21:06:06.388 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:06:06.388 -07 000000626 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:06:06.398 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:06:06.398 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:06:06.398 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 21:06:06.398 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 21:06:06.398 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 21:06:06.508 -07 000000618 INF: FPGA: Recv YMVTO 154378 873
17-03-17 21:06:06.508 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 21:06:06.508 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 21:06:06.508 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 873 steps (0.546 mm). Slippage = -0.003 mm (0.00%).
17-03-17 21:06:06.508 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 117 ms, distance = 0.548 mm, average velocity = 4.684 mm/sec
17-03-17 21:06:06.848 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:06:06.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:06:09.298 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.993549,
17-03-17 21:06:09.508 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:06:09.508 -07 000000459 INF: FPGA: Recv YRDPOS 154382
17-03-17 21:06:09.518 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:06:09.518 -07 000000610 INF: Y Motor: Encoder = 154382 = motor step 120610.9 = 75.3818 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:06:09.528 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.001256, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:06:09.528 -07 000000610 INF: Y Motor: Position error after settling = 3 encoder counts (0.001 mm), Delta during settling = 4 counts (0.002 mm)
17-03-17 21:06:09.528 -07 000000610 INF: Y Motor: Moved to 75.3818 after 3141 ms
17-03-17 21:06:09.538 -07 000000610 INF: =================== Cycle #47, Flow Cell Temp 60° ===================
17-03-17 21:06:09.538 -07 000000610 INF: =================== Cycle #47, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 21:06:09.808 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:06:09.808 -07 000000429 INF: FPGA: Recv TEC2EN 
17-03-17 21:06:09.818 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:09.818 -07 000000610 INF: =================== Cycle #47, Flow Cell Temp 60° ===================
17-03-17 21:06:09.818 -07 000000610 INF: =================== Cycle #47 ===================
17-03-17 21:06:09.818 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:06:09.818 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:06:09.848 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:06:09.848 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 21:06:09.848 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:06:10.148 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:06:10.168 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:06:10.168 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:06:10.218 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:06:10.238 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:06:10.238 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:06:10.338 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3) ===================
17-03-17 21:06:10.338 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:06:10.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:06:10.368 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:06:10.368 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:06:10.368 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:06:10.498 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:06:10.538 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:06:11.848 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:06:11.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=696, R2=712, Total=1408. Warn if over 250 bubbles per interval.
17-03-17 21:06:13.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:13.698 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:06:14.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:14.148 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:06:14.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:14.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:06:14.598 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:06:14.598 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3) ===================
17-03-17 21:06:14.658 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.988112,
17-03-17 21:06:14.728 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:06:14.758 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:06:14.758 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:06:14.888 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:06:14.918 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:06:14.918 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:06:14.918 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:06:15.048 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:06:15.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:06:15.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:15.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:06:15.538 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:06:15.538 -07 000000610 INF: =================== Cycle #47 ===================
17-03-17 21:06:16.758 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 21:06:16.758 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 21:06:16.758 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:06:16.778 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:06:16.778 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 21:06:16.778 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 21:06:16.848 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 21:06:16.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=697, R2=713, Total=1410. Warn if over 250 bubbles per interval.
17-03-17 21:06:16.918 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:06:16.938 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 21:06:16.938 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 21:06:16.988 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:06:17.008 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:06:17.008 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:06:17.108 -07 000000610 INF: =================== Cycle #47, Pumping Reagent CMS (4) ===================
17-03-17 21:06:17.108 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:06:17.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:06:17.138 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:06:17.138 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:06:17.138 -07 000000610 INF: =================== Cycle #47, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 21:06:17.268 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:06:17.308 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:06:18.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:18.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:06:19.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:19.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:06:19.228 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:06:19.228 -07 000000610 INF: =================== Cycle #47, Pumping Reagent CMS (4) ===================
17-03-17 21:06:19.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:06:19.388 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:06:19.388 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:06:19.518 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:06:19.548 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:06:19.548 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:06:19.548 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:06:19.678 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:06:19.708 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:06:20.018 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.009895,
17-03-17 21:06:20.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:20.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:06:20.168 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:06:20.168 -07 000000610 INF: =================== Cycle #47 ===================
17-03-17 21:06:21.388 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 21:06:21.388 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:06:21.388 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:06:21.408 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:06:21.408 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 21:06:21.408 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 21:06:21.558 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:06:21.578 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 21:06:21.578 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 21:06:21.628 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:06:21.648 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:06:21.648 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:06:21.748 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3) ===================
17-03-17 21:06:21.748 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:06:21.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:06:21.778 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:06:21.778 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:06:21.778 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:06:21.848 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 4
17-03-17 21:06:21.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=4, R2=3, Total=7. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=701, R2=716, Total=1417. Warn if over 250 bubbles per interval.
17-03-17 21:06:21.908 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:06:21.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:06:22.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:22.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:06:22.848 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:06:22.848 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3) ===================
17-03-17 21:06:22.978 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:06:23.008 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:06:23.008 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:06:23.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:06:23.168 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:06:23.168 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:06:23.168 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:06:23.298 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:06:23.328 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:06:23.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:23.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:06:23.788 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:06:23.788 -07 000000610 INF: =================== Cycle #47 ===================
17-03-17 21:06:23.788 -07 000000618 INF: WaitCommand(10000) start
17-03-17 21:06:23.788 -07 000000012 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:06:23.788 -07 000000012 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:06:25.008 -07 000000012 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:06:25.008 -07 000000012 INF: LanePump: Xmit /1?\r
17-03-17 21:06:25.038 -07 000000012 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:06:25.038 -07 000000012 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:06:25.168 -07 000000012 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:06:25.208 -07 000000012 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:06:25.378 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.001704,
17-03-17 21:06:26.738 -07 000000012 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:26.768 -07 000000012 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:06:26.848 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 21:06:26.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=702, R2=718, Total=1420. Warn if over 250 bubbles per interval.
17-03-17 21:06:27.188 -07 000000012 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:27.218 -07 000000012 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:06:27.218 -07 000000012 INF: LanePump: Waited 2010 ms for pump motion to complete
17-03-17 21:06:27.218 -07 000000012 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:06:27.218 -07 000000012 INF: ===================  ===================
17-03-17 21:06:30.738 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.001704,
17-03-17 21:06:31.848 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:06:31.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=702, R2=718, Total=1420. Warn if over 250 bubbles per interval.
17-03-17 21:06:33.798 -07 000000618 INF: WaitCommand(10000) end
17-03-17 21:06:33.798 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3) ===================
17-03-17 21:06:33.798 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 21:06:33.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:06:33.828 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:06:33.828 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:06:33.828 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:06:33.958 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 21:06:33.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:06:36.098 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.997626,
17-03-17 21:06:36.848 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:06:36.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=18, R2=15, Total=33. Bubbles this run: R1=702, R2=718, Total=1420. Warn if over 250 bubbles per interval.
17-03-17 21:06:40.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:40.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:06:40.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:40.608 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:06:41.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:41.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:06:41.458 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.005817,
17-03-17 21:06:41.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:41.508 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:06:41.848 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 17 R1 19
17-03-17 21:06:41.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=19, R2=17, Total=36. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=735, Total=1456. Warn if over 250 bubbles per interval.
17-03-17 21:06:41.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:41.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:06:41.958 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 21:06:41.958 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3) ===================
17-03-17 21:06:42.088 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:06:42.118 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:06:42.118 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:06:42.248 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:06:42.278 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:06:42.278 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:06:42.278 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:06:42.408 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:06:42.438 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:06:42.868 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:42.898 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:06:42.898 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:06:42.898 -07 000000610 INF: =================== Cycle #47 ===================
17-03-17 21:06:44.118 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:06:44.118 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 21:06:44.118 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:06:44.138 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:06:44.138 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 21:06:44.138 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 21:06:44.348 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:06:44.368 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 21:06:44.368 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 21:06:44.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:06:44.438 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:06:44.438 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:06:44.538 -07 000000610 INF: =================== Cycle #47, Pumping Reagent IMT (1) ===================
17-03-17 21:06:44.538 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:06:44.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:06:44.568 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:06:44.568 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:06:44.568 -07 000000610 INF: =================== Cycle #47, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 21:06:44.698 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:06:44.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:06:46.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:46.208 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:06:46.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:46.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:06:46.658 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 21:06:46.658 -07 000000610 INF: =================== Cycle #47, Pumping Reagent IMT (1) ===================
17-03-17 21:06:46.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:06:46.818 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:06:46.818 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:06:46.818 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.003063,
17-03-17 21:06:46.848 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 21:06:46.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:06:46.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:06:46.978 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:06:46.978 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:06:46.978 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:06:47.108 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:06:47.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:06:47.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:47.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:06:47.598 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:06:47.598 -07 000000610 INF: =================== Cycle #47 ===================
17-03-17 21:06:48.818 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:06:48.818 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:06:48.818 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:06:48.838 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:06:48.838 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 21:06:48.838 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:06:49.068 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:06:49.088 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 21:06:49.088 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 21:06:49.138 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:06:49.158 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:06:49.158 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:06:49.258 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3) ===================
17-03-17 21:06:49.258 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:06:49.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:06:49.288 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:06:49.288 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:06:49.288 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:06:49.418 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:06:49.458 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:06:50.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:50.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:06:50.358 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:06:50.358 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3) ===================
17-03-17 21:06:50.488 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:06:50.518 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:06:50.518 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:06:50.648 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:06:50.678 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:06:50.678 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:06:50.678 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:06:50.808 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:06:50.838 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:06:51.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:06:51.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:06:51.298 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:06:51.298 -07 000000610 INF: =================== Cycle #47 ===================
17-03-17 21:06:51.298 -07 000000610 INF: =================== Cycle #47, Flow Cell Temp 65° ===================
17-03-17 21:06:51.298 -07 000000610 INF: =================== Cycle #47, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 21:06:51.298 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 21:06:51.298 -07 000000431 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:06:51.308 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:06:51.308 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:06:51.308 -07 000000618 INF: FPGA: Recv TEC2EN 
17-03-17 21:06:51.318 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:06:51.318 -07 000000610 INF: =================== Cycle #47, Flow Cell Temp 65° ===================
17-03-17 21:06:51.318 -07 000000610 INF: =================== Cycle #47 ===================
17-03-17 21:06:51.318 -07 000000610 INF: WaitCommand(30000) start
17-03-17 21:06:51.848 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:06:51.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:06:52.178 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.970374,
17-03-17 21:06:56.848 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:06:56.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:06:57.538 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.985358,
17-03-17 21:07:01.848 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:07:01.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:07:02.898 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.986717,
17-03-17 21:07:06.848 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:07:06.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:07:08.258 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.977204,
17-03-17 21:07:11.848 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:07:11.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:07:13.618 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.962185,
17-03-17 21:07:16.848 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:07:16.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:07:18.978 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.964938,
17-03-17 21:07:21.328 -07 000000610 INF: WaitCommand(30000) end
17-03-17 21:07:21.328 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3) ===================
17-03-17 21:07:21.328 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 21:07:21.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:07:21.458 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:07:21.458 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:07:21.458 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:07:21.588 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 21:07:21.628 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:07:21.848 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:07:21.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:07:22.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:07:22.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:07:22.198 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 21:07:22.198 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3) ===================
17-03-17 21:07:22.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:07:22.358 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:07:22.358 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:07:22.488 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:07:22.518 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:07:22.518 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:07:22.518 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:07:22.648 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:07:22.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:07:23.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:07:23.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:07:23.138 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:07:23.138 -07 000000610 INF: =================== Cycle #47 ===================
17-03-17 21:07:23.138 -07 000000459 INF: WaitCommand(30000) start
17-03-17 21:07:23.138 -07 000000476 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:07:23.138 -07 000000476 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:07:24.338 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.003063,
17-03-17 21:07:24.358 -07 000000476 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:07:24.358 -07 000000476 INF: LanePump: Xmit /1?\r
17-03-17 21:07:24.388 -07 000000476 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:07:24.388 -07 000000476 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:07:24.518 -07 000000476 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:07:24.558 -07 000000476 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:07:26.848 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:07:26.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:07:26.898 -07 000000476 INF: LanePump: Xmit /1Q\r
17-03-17 21:07:26.928 -07 000000476 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:07:27.348 -07 000000476 INF: LanePump: Xmit /1Q\r
17-03-17 21:07:27.378 -07 000000476 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:07:27.378 -07 000000476 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 21:07:27.378 -07 000000476 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:07:27.378 -07 000000476 INF: ===================  ===================
17-03-17 21:07:29.698 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.031682,
17-03-17 21:07:31.848 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:07:31.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:07:35.058 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.004458,
17-03-17 21:07:36.848 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:07:36.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:07:40.418 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.003063,
17-03-17 21:07:41.848 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:07:41.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:07:45.778 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.004458,
17-03-17 21:07:46.848 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:07:46.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:07:51.138 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.996267,
17-03-17 21:07:51.848 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:07:51.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:07:53.148 -07 000000459 INF: WaitCommand(30000) end
17-03-17 21:07:53.148 -07 000000610 INF: =================== Cycle #47, Flow Cell Temp 22° ===================
17-03-17 21:07:53.148 -07 000000610 INF: =================== Cycle #47, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 21:07:53.148 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 21:07:53.148 -07 000000459 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:07:53.158 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:07:53.158 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:07:53.158 -07 000000627 INF: FPGA: Recv TEC2EN 
17-03-17 21:07:53.168 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:07:53.168 -07 000000610 INF: =================== Cycle #47, Flow Cell Temp 22° ===================
17-03-17 21:07:53.168 -07 000000610 INF: =================== Cycle #47 ===================
17-03-17 21:07:53.168 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3) ===================
17-03-17 21:07:53.168 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:07:53.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:07:53.208 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:07:53.208 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:07:53.208 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:07:53.338 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:07:53.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:07:56.498 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.970374,
17-03-17 21:07:56.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:07:56.538 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:07:56.848 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:07:56.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:07:56.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:07:56.988 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:07:57.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:07:57.438 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:07:57.438 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:07:57.438 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3) ===================
17-03-17 21:07:57.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:07:57.598 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:07:57.598 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:07:57.728 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:07:57.758 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:07:57.758 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:07:57.758 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:07:57.888 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:07:57.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:07:58.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:07:58.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:07:58.378 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:07:58.378 -07 000000610 INF: =================== Cycle #47 ===================
17-03-17 21:07:59.598 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 21:07:59.598 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 21:07:59.598 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:07:59.618 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:07:59.618 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 21:07:59.618 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 21:07:59.768 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:07:59.788 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:07:59.788 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:07:59.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:07:59.858 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:07:59.858 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:07:59.958 -07 000000610 INF: =================== Cycle #47, Pumping Reagent USM (2) ===================
17-03-17 21:07:59.958 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:07:59.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:07:59.988 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:07:59.988 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:07:59.988 -07 000000610 INF: =================== Cycle #47, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 21:08:00.118 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:08:00.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:08:01.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:08:01.628 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:08:01.848 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:08:01.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:08:01.858 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.952638,
17-03-17 21:08:02.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:08:02.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:08:02.078 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:08:02.078 -07 000000610 INF: =================== Cycle #47, Pumping Reagent USM (2) ===================
17-03-17 21:08:02.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:08:02.238 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:08:02.238 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:08:02.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:08:02.398 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:08:02.398 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:08:02.398 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:08:02.528 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:08:02.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:08:02.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:08:03.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:08:03.018 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:08:03.018 -07 000000610 INF: =================== Cycle #47 ===================
17-03-17 21:08:04.238 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 21:08:04.238 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:08:04.238 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:08:04.258 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:08:04.258 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 21:08:04.258 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:08:04.408 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:08:04.428 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:08:04.428 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:08:04.478 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:08:04.498 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:08:04.498 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:08:04.598 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3) ===================
17-03-17 21:08:04.598 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:08:04.598 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:08:04.628 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:08:04.628 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:08:04.628 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:08:04.758 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:08:04.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:08:05.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:08:05.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:08:05.698 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:08:05.698 -07 000000610 INF: =================== Cycle #47, Pumping Reagent PR2 (3) ===================
17-03-17 21:08:05.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:08:05.858 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:08:05.858 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:08:05.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:08:06.018 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:08:06.018 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:08:06.018 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:08:06.148 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:08:06.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:08:06.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:08:06.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:08:06.638 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:08:06.638 -07 000000610 INF: =================== Cycle #47 ===================
17-03-17 21:08:06.638 -07 000000626 INF: WaitCommand(10000) start
17-03-17 21:08:06.638 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:08:06.638 -07 000000438 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:08:06.848 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:08:06.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:08:07.218 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.944485,
17-03-17 21:08:07.858 -07 000000438 INF: AsyncDelayTimer waited 1214ms
17-03-17 21:08:07.858 -07 000000438 INF: LanePump: Xmit /1?\r
17-03-17 21:08:07.888 -07 000000438 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:08:07.888 -07 000000438 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:08:08.018 -07 000000438 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:08:08.058 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:08:09.588 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-17 21:08:09.618 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:08:10.038 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-17 21:08:10.068 -07 000000438 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:08:10.068 -07 000000438 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 21:08:10.068 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:08:10.068 -07 000000438 INF: ===================  ===================
17-03-17 21:08:11.848 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:08:11.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:08:12.578 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.000345,
17-03-17 21:08:16.648 -07 000000626 INF: WaitCommand(10000) end
17-03-17 21:08:16.648 -07 000000610 INF: =================== Cycle #47, Imaging ===================
17-03-17 21:08:16.648 -07 000000610 INF: Imaging Cycle 47: ScanTilesCommand Cycle 47 time start.
17-03-17 21:08:16.648 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 21:08:16.648 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:08:16.678 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:08:16.678 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 21:08:16.678 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 21:08:16.848 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:08:16.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:08:16.978 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:08:16.998 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:08:16.998 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:08:17.048 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:08:17.068 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:08:17.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:08:17.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:08:17.068 -07 000000576 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 21:08:17.068 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:08:17.068 -07 000000576 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 21:08:17.068 -07 000000429 INF: FPGA: Recv EXLED1ON 
17-03-17 21:08:17.078 -07 000000576 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:08:17.078 -07 000000576 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 21:08:17.078 -07 000000627 INF: FPGA: Recv EXLED1ADCR 23240
17-03-17 21:08:17.088 -07 000000576 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:17.088 -07 000000576 INF: RedLED: Using Red data: Photodiode ADC 23240 --> 7.5 mW (old method), or 205.9 mW (new method). Difference = 198.5 mW
17-03-17 21:08:17.088 -07 000000576 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 21:08:17.088 -07 000000627 INF: FPGA: Recv EXLED1OFF 
17-03-17 21:08:17.098 -07 000000576 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:17.098 -07 000000576 INF: RedLED: LED was on for 19 ms
17-03-17 21:08:17.098 -07 000000576 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 24 ms.
17-03-17 21:08:17.098 -07 000000576 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 21:08:17.098 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:08:17.098 -07 000000576 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 21:08:17.098 -07 000000626 INF: FPGA: Recv EXLED2ON 
17-03-17 21:08:17.108 -07 000000576 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:08:17.108 -07 000000576 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:08:17.108 -07 000000433 INF: FPGA: Recv EXLED1ADCR 2098
17-03-17 21:08:17.118 -07 000000576 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:17.118 -07 000000576 INF: GreenLED: Using Green data: Photodiode ADC 2098 --> 0.9 mW (old method), or 182.3 mW (new method). Difference = 181.4 mW
17-03-17 21:08:17.118 -07 000000576 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 21:08:17.118 -07 000000433 INF: FPGA: Recv EXLED2OFF 
17-03-17 21:08:17.128 -07 000000576 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:17.128 -07 000000576 INF: GreenLED: LED was on for 20 ms
17-03-17 21:08:17.128 -07 000000576 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 26 ms.
17-03-17 21:08:17.128 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:08:17.128 -07 000000618 INF: FPGA: Recv EMCUR 
17-03-17 21:08:17.138 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:08:17.138 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 21:08:17.638 -07 000000382 INF: FPGA: Recv EMOUT
17-03-17 21:08:17.638 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 21:08:17.638 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 21:08:17.638 -07 000000576 INF: FPGA: Recv EMCUR 
17-03-17 21:08:17.648 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:08:17.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:08:17.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3818359375, Z-Position -0.127653378064885. ------
17-03-17 21:08:17.648 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17950 mm
17-03-17 21:08:17.648 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:08:17.648 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:08:17.658 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:08:17.658 -07 000000429 INF: Y Motor: Moving to 59.9126 mm, started at 75.3818 mm, delta = -15.4692 mm
17-03-17 21:08:17.658 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:17.658 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:08:17.658 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:08:17.658 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 39211, sync = True, waitForSettling = False)
17-03-17 21:08:17.658 -07 000000382 INF: Z Motor: Moving to -0.179496 mm, started at -0.127653 mm, distance = -51.84 um
17-03-17 21:08:17.658 -07 000000576 INF: FPGA: Recv YRDPOS 154382
17-03-17 21:08:17.668 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:08:17.668 -07 000000429 INF: Y Motor: Encoder = 154382 = motor step 120610.9 = 75.3818 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:17.668 -07 000000429 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 21:08:17.668 -07 000000429 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:08:17.668 -07 000000382 INF: FPGA: Xmit ZDACW 39211\n [Z Motor]
17-03-17 21:08:17.668 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:08:17.678 -07 000000382 INF: FPGA: 'ZDACW 39211' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:08:17.678 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:08:17.688 -07 000000429 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:08:17.698 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:17.698 -07 000000433 INF: FPGA: Recv ZDACR 39211
17-03-17 21:08:17.708 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:08:17.708 -07 000000382 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 21:08:17.878 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:08:17.878 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 21:08:17.938 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.023489,
17-03-17 21:08:19.368 -07 000000431 INF: FPGA: Recv YMVTO 122703 24778
17-03-17 21:08:19.368 -07 000000429 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-17 21:08:19.368 -07 000000429 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:08:19.368 -07 000000429 INF: Y Motor: To move from 75.382 to 59.913 (-15.469 mm) should take 24751 steps, but required 24778 steps (15.486 mm). Slippage = 0.017 mm (0.00%).
17-03-17 21:08:19.368 -07 000000429 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.469 mm, average velocity = 9.073 mm/sec
17-03-17 21:08:21.848 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:08:21.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:08:22.218 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:22.218 -07 000000382 INF: FPGA: Recv YRDPOS 122696
17-03-17 21:08:22.228 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:22.228 -07 000000429 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:22.248 -07 000000429 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:08:22.248 -07 000000429 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-17 21:08:22.248 -07 000000429 INF: Y Motor: Moved to 59.9102 after 4593 ms
17-03-17 21:08:22.248 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179496 mm (DAC = 39211)
17-03-17 21:08:22.248 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:22.258 -07 000000431 INF: FPGA: Recv ZSGSRD 37230
17-03-17 21:08:22.258 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 21:08:22.258 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:22.258 -07 000000431 INF: FPGA: Recv ZSGSRD 37232
17-03-17 21:08:22.268 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:08:22.268 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:22.268 -07 000000431 INF: FPGA: Recv ZSGSRD 37232
17-03-17 21:08:22.278 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:22.278 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:22.278 -07 000000627 INF: FPGA: Recv ZSGSRD 37232
17-03-17 21:08:22.288 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:22.288 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:22.288 -07 000000431 INF: FPGA: Recv ZSGSRD 37227
17-03-17 21:08:22.298 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:22.298 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:22.298 -07 000000431 INF: FPGA: Recv ZSGSRD 37232
17-03-17 21:08:22.308 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:22.308 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:22.308 -07 000000431 INF: FPGA: Recv ZSGSRD 37230
17-03-17 21:08:22.318 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:22.318 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:22.318 -07 000000627 INF: FPGA: Recv ZSGSRD 37232
17-03-17 21:08:22.328 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:22.328 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:22.328 -07 000000627 INF: FPGA: Recv ZSGSRD 37233
17-03-17 21:08:22.338 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:22.338 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:22.338 -07 000000433 INF: FPGA: Recv ZSGSRD 37229
17-03-17 21:08:22.348 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:22.348 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:22.348 -07 000000627 INF: FPGA: Recv ZPIEZORD 33712
17-03-17 21:08:22.358 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:22.358 -07 000000541 INF: Z Motor: Piezo is near 52.0 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.983 V. Piezo Error = -7.8 V.
17-03-17 21:08:22.358 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37231 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37232 (-178.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 37227 (-178.6 uncal um), Max = 37233 (-178.6 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:08:22.358 -07 000000541 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37231, posNoise = 2, negNoise = 4
17-03-17 21:08:22.358 -07 000000541 INF: Z Motor: After move to -0.179496, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:22.358 -07 000000541 INF: Z Motor: Settle wait time = 4595 ms, measure time = 103 ms (allowed 150 ms), total time = 4698 ms
17-03-17 21:08:22.358 -07 000000541 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:08:22.408 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4752 ms
17-03-17 21:08:22.408 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:08:22.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:08:22.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:08:22.408 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:08:22.408 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:08:22.408 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:08:22.408 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:08:22.418 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:08:22.418 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:08:22.438 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 21:08:22.438 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:08:22.438 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:08:22.438 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:08:22.458 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:08:22.458 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-17 21:08:22.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:08:22.498 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:08:22.698 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:08:22.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:08:22.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:08:22.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 21:08:22.738 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:08:22.738 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:08:22.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 21:08:22.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:08:22.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:22.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:08:22.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:08:22.938 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:08:22.938 -07 000000626 INF: Image SNR check: start
17-03-17 21:08:22.938 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:08:22.948 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:08:22.948 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:08:22.948 -07 000000626 INF: Image SNR check: pass  [peak (Max-Min)=60.96]
17-03-17 21:08:22.948 -07 000000626 INF: Autofocus start
17-03-17 21:08:22.948 -07 000000626 INF: MeasureProfile start
17-03-17 21:08:22.968 -07 000000626 INF: MeasureProfile done
17-03-17 21:08:22.968 -07 000000626 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:08:22.968 -07 000000626 INF: Autofocus finished
17-03-17 21:08:23.148 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:08:23.148 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:08:23.148 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.179503194261037. ----------
17-03-17 21:08:23.148 -07 000000610 INF: Cycle	47	Tile	1	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:08:23.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37744, sync = True, waitForSettling = True)
17-03-17 21:08:23.158 -07 000000610 INF: Z Motor: Moving to -0.172781 mm, started at -0.179503 mm, distance = 6.72 um
17-03-17 21:08:23.158 -07 000000610 INF: FPGA: Xmit ZDACW 37744\n [Z Motor]
17-03-17 21:08:23.158 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:08:23.168 -07 000000610 INF: FPGA: 'ZDACW 37744' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:23.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:23.168 -07 000000431 INF: FPGA: Recv ZDACR 37744
17-03-17 21:08:23.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:23.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:08:23.298 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.046637,
17-03-17 21:08:23.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:23.328 -07 000000429 INF: FPGA: Recv ZSGSRD 36191
17-03-17 21:08:23.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:23.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:23.338 -07 000000626 INF: FPGA: Recv ZSGSRD 36187
17-03-17 21:08:23.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:23.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:23.358 -07 000000541 INF: FPGA: Recv ZSGSRD 36182
17-03-17 21:08:23.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:08:23.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:23.368 -07 000000541 INF: FPGA: Recv ZSGSRD 36191
17-03-17 21:08:23.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:23.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:23.378 -07 000000541 INF: FPGA: Recv ZSGSRD 36191
17-03-17 21:08:23.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:23.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:23.388 -07 000000541 INF: FPGA: Recv ZSGSRD 36181
17-03-17 21:08:23.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:23.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:23.398 -07 000000541 INF: FPGA: Recv ZSGSRD 36184
17-03-17 21:08:23.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:23.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:23.408 -07 000000382 INF: FPGA: Recv ZSGSRD 36186
17-03-17 21:08:23.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:23.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:23.418 -07 000000382 INF: FPGA: Recv ZSGSRD 36181
17-03-17 21:08:23.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:23.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:23.428 -07 000000541 INF: FPGA: Recv ZSGSRD 36180
17-03-17 21:08:23.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:23.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:23.438 -07 000000541 INF: FPGA: Recv ZPIEZORD 32303
17-03-17 21:08:23.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:23.448 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.759 V. Piezo Error = -8.6 V.
17-03-17 21:08:23.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36185 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36185 (-171.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36180 (-171.9 uncal um), Max = 36191 (-171.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:08:23.448 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36185, posNoise = 6, negNoise = 5
17-03-17 21:08:23.448 -07 000000610 INF: Z Motor: After move to -0.172781, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:23.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-17 21:08:23.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:08:23.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:08:23.448 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:08:23.448 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:08:23.448 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:08:23.448 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:08:23.448 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:08:23.448 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:08:23.448 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 21:08:23.448 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:08:23.448 -07 000000431 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:08:23.448 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:08:23.458 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:08:23.458 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:08:23.468 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 21:08:23.468 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:08:23.478 -07 000000431 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 21:08:23.478 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:08:23.478 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:08:23.478 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:08:23.488 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 21:08:23.488 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 43 ms.
17-03-17 21:08:23.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37921 150\n [Camera]
17-03-17 21:08:23.698 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:08:24.118 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 619
17-03-17 21:08:24.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 619
17-03-17 21:08:24.118 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:24.118 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:24.118 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 21:08:24.128 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 619
17-03-17 21:08:24.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 619
17-03-17 21:08:24.128 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:24.128 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:24.128 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 21:08:24.308 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37921 811
17-03-17 21:08:24.458 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:08:24.508 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 21:08:24.508 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:08:24.508 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:24.518 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:08:24.518 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:08:24.518 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:24.518 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:08:24.518 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:08:24.518 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:08:24.528 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:08:24.668 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:08:24.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:08:24.668 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:24.668 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:24.668 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 21:08:24.668 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:08:24.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:08:24.668 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:24.668 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:24.668 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 21:08:24.858 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:08:24.858 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:08:24.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37921 150' command took 2 ms to send, 1356 ms to get response, and 1365 ms overall
17-03-17 21:08:24.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:08:24.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.172783468360755. ------
17-03-17 21:08:24.868 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:08:24.868 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17916 mm
17-03-17 21:08:24.868 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:08:24.868 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:08:24.868 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:08:24.868 -07 000000431 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-17 21:08:24.868 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 39137, sync = True, waitForSettling = False)
17-03-17 21:08:24.868 -07 000000433 INF: Z Motor: Moving to -0.179158 mm, started at -0.172783 mm, distance = -6.37 um
17-03-17 21:08:24.878 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:08:24.878 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:24.878 -07 000000626 INF: FPGA: Recv YRDPOS 122696
17-03-17 21:08:24.888 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:08:24.888 -07 000000431 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:24.888 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:08:24.888 -07 000000431 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:08:24.888 -07 000000431 INF: Y Motor: Moving 1332 steps2
17-03-17 21:08:24.898 -07 000000433 INF: FPGA: Xmit ZDACW 39137\n [Z Motor]
17-03-17 21:08:24.898 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:08:24.908 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:08:24.908 -07 000000433 INF: FPGA: 'ZDACW 39137' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 21:08:24.918 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:24.918 -07 000000576 INF: FPGA: Recv ZDACR 39137
17-03-17 21:08:24.928 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:08:24.928 -07 000000433 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 21:08:25.068 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 21:08:25.068 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:08:25.068 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:25.078 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 21:08:25.078 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:08:25.078 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:25.078 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:08:25.078 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 21:08:25.078 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:08:25.088 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:08:25.088 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 21:08:25.088 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 21:08:25.278 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:08:25.278 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:08:25.308 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:25.318 -07 000000382 INF: FPGA: Recv YRDPOS 124380
17-03-17 21:08:25.328 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:25.328 -07 000000431 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:25.328 -07 000000431 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 21:08:25.328 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-17 21:08:26.278 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:26.278 -07 000000438 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:08:26.288 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:26.288 -07 000000431 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:26.308 -07 000000431 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:08:26.308 -07 000000431 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:08:26.308 -07 000000431 INF: Y Motor: Moved to 60.7329 after 1436 ms (table move)
17-03-17 21:08:26.308 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179158 mm (DAC = 39137)
17-03-17 21:08:26.308 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:26.318 -07 000000382 INF: FPGA: Recv ZSGSRD 37185
17-03-17 21:08:26.318 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 6 ms to get response, and 6 ms overall
17-03-17 21:08:26.318 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:26.318 -07 000000626 INF: FPGA: Recv ZSGSRD 37175
17-03-17 21:08:26.328 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:08:26.328 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:26.328 -07 000000459 INF: FPGA: Recv ZSGSRD 37186
17-03-17 21:08:26.338 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:26.338 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:26.338 -07 000000576 INF: FPGA: Recv ZSGSRD 37183
17-03-17 21:08:26.348 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:26.348 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:26.348 -07 000000431 INF: FPGA: Recv ZSGSRD 37174
17-03-17 21:08:26.358 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:26.358 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:26.358 -07 000000626 INF: FPGA: Recv ZSGSRD 37181
17-03-17 21:08:26.368 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:26.368 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:26.368 -07 000000459 INF: FPGA: Recv ZSGSRD 37177
17-03-17 21:08:26.378 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:26.378 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:26.378 -07 000000627 INF: FPGA: Recv ZSGSRD 37171
17-03-17 21:08:26.388 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:26.388 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:26.388 -07 000000459 INF: FPGA: Recv ZSGSRD 37171
17-03-17 21:08:26.398 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:26.398 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:26.398 -07 000000433 INF: FPGA: Recv ZSGSRD 37183
17-03-17 21:08:26.408 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:26.408 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:26.408 -07 000000382 INF: FPGA: Recv ZPIEZORD 33664
17-03-17 21:08:26.418 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:26.418 -07 000000618 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.972 V. Piezo Error = -7.8 V.
17-03-17 21:08:26.418 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.2 um, Read 10 ADC samples: Avg = 37179 (-178.3 uncal um), Error = 0.9 uncal um, Median = 37179 (-178.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 37171 (-178.2 uncal um), Max = 37186 (-178.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:08:26.418 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37179, posNoise = 7, negNoise = 8
17-03-17 21:08:26.418 -07 000000618 INF: Z Motor: After move to -0.179158, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:26.418 -07 000000618 INF: Z Motor: Settle wait time = 1441 ms, measure time = 101 ms (allowed 150 ms), total time = 1542 ms
17-03-17 21:08:26.418 -07 000000618 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 21:08:26.468 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 21:08:26.468 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:08:26.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:08:26.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:08:26.468 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:08:26.468 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:08:26.468 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:08:26.468 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:08:26.478 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:08:26.478 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:08:26.478 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:08:26.478 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:08:26.488 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:08:26.488 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:08:26.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:08:26.538 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:08:26.738 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:08:26.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:08:26.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:08:26.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 21:08:26.778 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:08:26.778 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 21:08:26.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 285 ms overall
17-03-17 21:08:26.848 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:08:26.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:08:26.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:26.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:08:26.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:08:26.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:08:26.878 -07 000000438 INF: Autofocus start
17-03-17 21:08:26.878 -07 000000438 INF: MeasureProfile start
17-03-17 21:08:26.878 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:08:26.878 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:08:26.888 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:08:26.888 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:08:26.888 -07 000000438 INF: MeasureProfile done
17-03-17 21:08:26.888 -07 000000438 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:08:26.888 -07 000000438 INF: Autofocus finished
17-03-17 21:08:27.088 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:08:27.088 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:08:27.088 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.179169135229666. ----------
17-03-17 21:08:27.088 -07 000000610 INF: Cycle	47	Tile	2	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:08:27.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37652, sync = True, waitForSettling = True)
17-03-17 21:08:27.098 -07 000000610 INF: Z Motor: Moving to -0.172360 mm, started at -0.179169 mm, distance = 6.81 um
17-03-17 21:08:27.098 -07 000000610 INF: FPGA: Xmit ZDACW 37652\n [Z Motor]
17-03-17 21:08:27.098 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:08:27.108 -07 000000610 INF: FPGA: 'ZDACW 37652' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:08:27.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:27.108 -07 000000431 INF: FPGA: Recv ZDACR 37652
17-03-17 21:08:27.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:27.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:08:27.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:27.268 -07 000000438 INF: FPGA: Recv ZSGSRD 36115
17-03-17 21:08:27.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:27.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:27.278 -07 000000618 INF: FPGA: Recv ZSGSRD 36124
17-03-17 21:08:27.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:27.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:27.288 -07 000000459 INF: FPGA: Recv ZSGSRD 36122
17-03-17 21:08:27.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:27.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:27.298 -07 000000626 INF: FPGA: Recv ZSGSRD 36118
17-03-17 21:08:27.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:27.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:27.308 -07 000000627 INF: FPGA: Recv ZSGSRD 36121
17-03-17 21:08:27.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:27.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:27.318 -07 000000382 INF: FPGA: Recv ZSGSRD 36121
17-03-17 21:08:27.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:27.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:27.328 -07 000000438 INF: FPGA: Recv ZSGSRD 36119
17-03-17 21:08:27.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:27.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:27.338 -07 000000626 INF: FPGA: Recv ZSGSRD 36120
17-03-17 21:08:27.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:27.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:27.348 -07 000000433 INF: FPGA: Recv ZSGSRD 36115
17-03-17 21:08:27.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:27.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:27.358 -07 000000459 INF: FPGA: Recv ZSGSRD 36128
17-03-17 21:08:27.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:27.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:27.368 -07 000000433 INF: FPGA: Recv ZPIEZORD 32215
17-03-17 21:08:27.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:27.378 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.745 V. Piezo Error = -8.6 V.
17-03-17 21:08:27.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36120 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36120 (-171.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36115 (-171.5 uncal um), Max = 36128 (-171.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:08:27.378 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36120, posNoise = 8, negNoise = 5
17-03-17 21:08:27.378 -07 000000610 INF: Z Motor: After move to -0.172360, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:27.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:08:27.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:08:27.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:08:27.378 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:08:27.378 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:08:27.378 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:08:27.378 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:08:27.378 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:08:27.378 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:08:27.378 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:08:27.378 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:08:27.378 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:08:27.378 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:08:27.388 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:08:27.388 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:08:27.388 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:08:27.388 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:08:27.398 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:08:27.398 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:08:27.398 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:08:27.398 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:08:27.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37829 150\n [Camera]
17-03-17 21:08:27.608 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:08:28.028 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:08:28.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:08:28.028 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:28.028 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:28.028 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 21:08:28.028 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:08:28.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:08:28.038 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:28.038 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:28.038 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) start.
17-03-17 21:08:28.218 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37829 811
17-03-17 21:08:28.368 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:08:28.428 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:08:28.428 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:08:28.428 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:28.438 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:08:28.438 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:08:28.438 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2853998696, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:08:28.438 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:08:28.438 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:28.438 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:08:28.448 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:08:28.578 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:08:28.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:08:28.578 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:28.578 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:28.578 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) start.
17-03-17 21:08:28.578 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:08:28.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:08:28.578 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:28.578 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:28.578 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) start.
17-03-17 21:08:28.678 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.031682,
17-03-17 21:08:28.768 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:08:28.768 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:08:28.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37829 150' command took 2 ms to send, 1356 ms to get response, and 1366 ms overall
17-03-17 21:08:28.768 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.172513
17-03-17 21:08:28.768 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17251 mm
17-03-17 21:08:28.768 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:08:28.778 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:08:28.778 -07 000000627 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 21:08:28.778 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37686, sync = True, waitForSettling = False)
17-03-17 21:08:28.778 -07 000000431 INF: Z Motor: Moving to -0.172515 mm, started at -0.172366 mm, distance = -0.15 um
17-03-17 21:08:28.778 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:28.778 -07 000000433 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:08:28.788 -07 000000627 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:28.788 -07 000000627 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:28.788 -07 000000627 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:08:28.788 -07 000000627 INF: Y Motor: Moving 1344 steps-21
17-03-17 21:08:28.788 -07 000000431 INF: FPGA: Xmit ZDACW 37686\n [Z Motor]
17-03-17 21:08:28.788 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 21:08:28.798 -07 000000431 INF: FPGA: 'ZDACW 37686' command took 1 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:08:28.798 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:28.798 -07 000000618 INF: FPGA: Recv ZDACR 37686
17-03-17 21:08:28.808 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:08:28.808 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:28.808 -07 000000431 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 21:08:28.978 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2952794160, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 21:08:28.978 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:08:28.978 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:28.978 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:08:28.978 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2889420960, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:08:28.978 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:08:28.978 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:28.988 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:08:28.988 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:08:28.988 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:08:29.178 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 21:08:29.178 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:08:29.218 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:29.218 -07 000000438 INF: FPGA: Recv YRDPOS 126081
17-03-17 21:08:29.228 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:08:29.228 -07 000000627 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:29.228 -07 000000627 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:08:29.228 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-17 21:08:30.178 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:30.178 -07 000000459 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:08:30.188 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:30.188 -07 000000627 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:30.208 -07 000000627 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:08:30.208 -07 000000627 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:08:30.208 -07 000000627 INF: Y Motor: Moved to 61.5635 after 1433 ms (table move)
17-03-17 21:08:30.208 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172515 mm (DAC = 37686)
17-03-17 21:08:30.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.208 -07 000000433 INF: FPGA: Recv ZSGSRD 36143
17-03-17 21:08:30.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:08:30.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.218 -07 000000627 INF: FPGA: Recv ZSGSRD 36136
17-03-17 21:08:30.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:30.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.228 -07 000000433 INF: FPGA: Recv ZSGSRD 36140
17-03-17 21:08:30.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:30.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.238 -07 000000459 INF: FPGA: Recv ZSGSRD 36148
17-03-17 21:08:30.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:30.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.248 -07 000000576 INF: FPGA: Recv ZSGSRD 36147
17-03-17 21:08:30.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:30.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.258 -07 000000382 INF: FPGA: Recv ZSGSRD 36144
17-03-17 21:08:30.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:30.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.268 -07 000000433 INF: FPGA: Recv ZSGSRD 36150
17-03-17 21:08:30.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:30.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.278 -07 000000459 INF: FPGA: Recv ZSGSRD 36145
17-03-17 21:08:30.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:30.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.288 -07 000000576 INF: FPGA: Recv ZSGSRD 36138
17-03-17 21:08:30.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:30.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.298 -07 000000382 INF: FPGA: Recv ZSGSRD 36137
17-03-17 21:08:30.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:30.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:30.308 -07 000000476 INF: FPGA: Recv ZPIEZORD 32284
17-03-17 21:08:30.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:30.318 -07 000000610 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.751 V. Piezo Error = -8.5 V.
17-03-17 21:08:30.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36143 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36144 (-171.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36136 (-171.6 uncal um), Max = 36150 (-171.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:08:30.318 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36143, posNoise = 7, negNoise = 7
17-03-17 21:08:30.318 -07 000000610 INF: Z Motor: After move to -0.172515, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:30.318 -07 000000610 INF: Z Motor: Settle wait time = 1433 ms, measure time = 103 ms (allowed 150 ms), total time = 1536 ms
17-03-17 21:08:30.318 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:08:30.368 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 21:08:30.368 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:08:30.368 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.172513651450801. ----------
17-03-17 21:08:30.368 -07 000000610 INF: Cycle	47	Tile	3	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:08:30.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37509, sync = True, waitForSettling = True)
17-03-17 21:08:30.368 -07 000000610 INF: Z Motor: Moving to -0.171705 mm, started at -0.172514 mm, distance = 0.81 um
17-03-17 21:08:30.368 -07 000000610 INF: FPGA: Xmit ZDACW 37509\n [Z Motor]
17-03-17 21:08:30.368 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:08:30.378 -07 000000610 INF: FPGA: 'ZDACW 37509' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:08:30.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:30.378 -07 000000382 INF: FPGA: Recv ZDACR 37509
17-03-17 21:08:30.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:30.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:08:30.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.538 -07 000000626 INF: FPGA: Recv ZSGSRD 36008
17-03-17 21:08:30.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:30.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.548 -07 000000431 INF: FPGA: Recv ZSGSRD 36025
17-03-17 21:08:30.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:30.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.558 -07 000000576 INF: FPGA: Recv ZSGSRD 36022
17-03-17 21:08:30.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:30.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.568 -07 000000382 INF: FPGA: Recv ZSGSRD 36021
17-03-17 21:08:30.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:30.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.578 -07 000000627 INF: FPGA: Recv ZSGSRD 36018
17-03-17 21:08:30.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:30.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.588 -07 000000431 INF: FPGA: Recv ZSGSRD 36018
17-03-17 21:08:30.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:30.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.598 -07 000000627 INF: FPGA: Recv ZSGSRD 36022
17-03-17 21:08:30.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:30.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.608 -07 000000459 INF: FPGA: Recv ZSGSRD 36012
17-03-17 21:08:30.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:30.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.618 -07 000000576 INF: FPGA: Recv ZSGSRD 36013
17-03-17 21:08:30.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:30.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:30.628 -07 000000382 INF: FPGA: Recv ZSGSRD 36022
17-03-17 21:08:30.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:30.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:30.638 -07 000000627 INF: FPGA: Recv ZPIEZORD 32092
17-03-17 21:08:30.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:30.648 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.724 V. Piezo Error = -8.7 V.
17-03-17 21:08:30.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36018 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36020 (-170.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36008 (-170.8 uncal um), Max = 36025 (-170.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:08:30.648 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36018, posNoise = 7, negNoise = 10
17-03-17 21:08:30.648 -07 000000610 INF: Z Motor: After move to -0.171705, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:30.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 21:08:30.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:08:30.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:08:30.648 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:08:30.648 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:08:30.648 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:08:30.648 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:08:30.648 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:08:30.648 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:08:30.648 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:08:30.648 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:08:30.648 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:08:30.648 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:08:30.658 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:08:30.658 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:08:30.658 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:08:30.658 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:08:30.668 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:08:30.668 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:08:30.668 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:08:30.668 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:08:30.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37686 150\n [Camera]
17-03-17 21:08:30.878 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:08:31.298 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:08:31.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:08:31.298 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:31.298 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:31.298 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) start.
17-03-17 21:08:31.308 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:08:31.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:08:31.308 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:31.458 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:31.458 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:08:31.498 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37686 811
17-03-17 21:08:31.638 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:08:31.698 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2988216424, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:08:31.698 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:08:31.698 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:31.708 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:08:31.708 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:08:31.818 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 367 ms.
17-03-17 21:08:31.818 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-17 21:08:31.818 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:31.828 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:08:31.828 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-17 21:08:31.848 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:08:31.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:08:31.848 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:31.848 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:08:31.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:08:31.858 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:31.858 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:08:31.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:08:31.858 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:31.858 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:08:31.868 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:31.868 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:08:32.038 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:08:32.038 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:08:32.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37686 150' command took 2 ms to send, 1357 ms to get response, and 1365 ms overall
17-03-17 21:08:32.038 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.172007
17-03-17 21:08:32.038 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17201 mm
17-03-17 21:08:32.048 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:08:32.048 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:08:32.048 -07 000000459 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 21:08:32.048 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:32.048 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 37575, sync = True, waitForSettling = False)
17-03-17 21:08:32.048 -07 000000476 INF: Z Motor: Moving to -0.172007 mm, started at -0.171711 mm, distance = -0.30 um
17-03-17 21:08:32.048 -07 000000382 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:08:32.058 -07 000000476 INF: FPGA: Xmit ZDACW 37575\n [Z Motor]
17-03-17 21:08:32.058 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:08:32.058 -07 000000459 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:32.058 -07 000000459 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:08:32.058 -07 000000459 INF: Y Motor: Moving 1343 steps-20
17-03-17 21:08:32.058 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:08:32.068 -07 000000476 INF: FPGA: 'ZDACW 37575' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:08:32.068 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:08:32.078 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:32.078 -07 000000627 INF: FPGA: Recv ZDACR 37575
17-03-17 21:08:32.088 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:08:32.088 -07 000000476 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 21:08:32.238 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:08:32.238 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:08:32.238 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:32.238 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:08:32.238 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:08:32.238 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:32.248 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:08:32.248 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:08:32.248 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:08:32.248 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:08:32.438 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 21:08:32.438 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 21:08:32.478 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:32.488 -07 000000576 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:08:32.488 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:08:32.488 -07 000000459 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:32.488 -07 000000459 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 21:08:32.488 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.839 mm, average velocity = 2.180 mm/sec
17-03-17 21:08:33.438 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:33.438 -07 000000618 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:08:33.448 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:33.448 -07 000000459 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:33.468 -07 000000459 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:08:33.468 -07 000000459 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:08:33.468 -07 000000459 INF: Y Motor: Moved to 62.3950 after 1419 ms (table move)
17-03-17 21:08:33.468 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172007 mm (DAC = 37575)
17-03-17 21:08:33.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.468 -07 000000618 INF: FPGA: Recv ZSGSRD 36062
17-03-17 21:08:33.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:08:33.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.478 -07 000000576 INF: FPGA: Recv ZSGSRD 36067
17-03-17 21:08:33.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.488 -07 000000618 INF: FPGA: Recv ZSGSRD 36066
17-03-17 21:08:33.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.498 -07 000000576 INF: FPGA: Recv ZSGSRD 36075
17-03-17 21:08:33.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.508 -07 000000618 INF: FPGA: Recv ZSGSRD 36073
17-03-17 21:08:33.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.518 -07 000000541 INF: FPGA: Recv ZSGSRD 36068
17-03-17 21:08:33.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.528 -07 000000459 INF: FPGA: Recv ZSGSRD 36058
17-03-17 21:08:33.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.538 -07 000000476 INF: FPGA: Recv ZSGSRD 36063
17-03-17 21:08:33.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.548 -07 000000618 INF: FPGA: Recv ZSGSRD 36066
17-03-17 21:08:33.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.558 -07 000000433 INF: FPGA: Recv ZSGSRD 36058
17-03-17 21:08:33.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:33.568 -07 000000476 INF: FPGA: Recv ZPIEZORD 32207
17-03-17 21:08:33.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.578 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.734 V. Piezo Error = -8.5 V.
17-03-17 21:08:33.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36066 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36066 (-171.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36058 (-171.1 uncal um), Max = 36075 (-171.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:08:33.578 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36066, posNoise = 9, negNoise = 8
17-03-17 21:08:33.578 -07 000000610 INF: Z Motor: After move to -0.172007, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:33.578 -07 000000610 INF: Z Motor: Settle wait time = 1422 ms, measure time = 106 ms (allowed 150 ms), total time = 1528 ms
17-03-17 21:08:33.578 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 21:08:33.628 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 21:08:33.628 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:08:33.628 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.172018987115886. ----------
17-03-17 21:08:33.628 -07 000000610 INF: Cycle	47	Tile	4	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:08:33.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37398, sync = True, waitForSettling = True)
17-03-17 21:08:33.628 -07 000000610 INF: Z Motor: Moving to -0.171197 mm, started at -0.172019 mm, distance = 0.82 um
17-03-17 21:08:33.628 -07 000000610 INF: FPGA: Xmit ZDACW 37398\n [Z Motor]
17-03-17 21:08:33.628 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:08:33.638 -07 000000610 INF: FPGA: 'ZDACW 37398' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:08:33.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:33.638 -07 000000576 INF: FPGA: Recv ZDACR 37398
17-03-17 21:08:33.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:08:33.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.798 -07 000000459 INF: FPGA: Recv ZSGSRD 35939
17-03-17 21:08:33.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:33.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.808 -07 000000429 INF: FPGA: Recv ZSGSRD 35946
17-03-17 21:08:33.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.818 -07 000000438 INF: FPGA: Recv ZSGSRD 35942
17-03-17 21:08:33.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.828 -07 000000429 INF: FPGA: Recv ZSGSRD 35937
17-03-17 21:08:33.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.838 -07 000000438 INF: FPGA: Recv ZSGSRD 35947
17-03-17 21:08:33.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.848 -07 000000429 INF: FPGA: Recv ZSGSRD 35937
17-03-17 21:08:33.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.858 -07 000000459 INF: FPGA: Recv ZSGSRD 35932
17-03-17 21:08:33.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.868 -07 000000415 INF: FPGA: Recv ZSGSRD 35942
17-03-17 21:08:33.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.878 -07 000000438 INF: FPGA: Recv ZSGSRD 35932
17-03-17 21:08:33.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:33.888 -07 000000415 INF: FPGA: Recv ZSGSRD 35939
17-03-17 21:08:33.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:33.898 -07 000000382 INF: FPGA: Recv ZPIEZORD 32008
17-03-17 21:08:33.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:33.908 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.707 V. Piezo Error = -8.7 V.
17-03-17 21:08:33.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35939 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35939 (-170.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35932 (-170.3 uncal um), Max = 35947 (-170.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:08:33.908 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35939, posNoise = 8, negNoise = 7
17-03-17 21:08:33.908 -07 000000610 INF: Z Motor: After move to -0.171197, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:33.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:08:33.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:08:33.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:08:33.908 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:08:33.908 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:08:33.908 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:08:33.908 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:08:33.908 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:08:33.908 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:08:33.908 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:08:33.908 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:08:33.908 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 21:08:33.908 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:08:33.918 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:08:33.918 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:08:33.918 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:08:33.918 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:08:33.928 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:08:33.928 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:08:33.928 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:08:33.928 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:08:33.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37575 150\n [Camera]
17-03-17 21:08:34.038 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.008536,
17-03-17 21:08:34.128 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:08:34.558 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:08:34.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:08:34.558 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:34.568 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:08:34.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:08:34.568 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:34.678 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:34.678 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:08:34.678 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:34.678 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:08:34.748 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37575 811
17-03-17 21:08:34.898 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:08:35.068 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 21:08:35.068 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:08:35.068 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:35.068 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:08:35.068 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:08:35.068 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:35.068 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:08:35.068 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-17 21:08:35.068 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:08:35.078 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 514 ms.
17-03-17 21:08:35.108 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:08:35.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:08:35.108 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:35.108 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:08:35.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:08:35.108 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:35.108 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:35.108 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:08:35.118 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:35.118 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:08:35.298 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-17 21:08:35.298 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:08:35.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37575 150' command took 2 ms to send, 1354 ms to get response, and 1365 ms overall
17-03-17 21:08:35.298 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171752
17-03-17 21:08:35.298 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17175 mm
17-03-17 21:08:35.298 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:08:35.298 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 37519, sync = True, waitForSettling = False)
17-03-17 21:08:35.298 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:08:35.298 -07 000000576 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 21:08:35.308 -07 000000429 INF: Z Motor: Moving to -0.171751 mm, started at -0.171203 mm, distance = -0.55 um
17-03-17 21:08:35.308 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:35.308 -07 000000626 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:08:35.318 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:35.318 -07 000000576 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:35.318 -07 000000576 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:08:35.318 -07 000000429 INF: FPGA: Xmit ZDACW 37519\n [Z Motor]
17-03-17 21:08:35.318 -07 000000576 INF: Y Motor: Moving 1340 steps-16
17-03-17 21:08:35.318 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:08:35.328 -07 000000429 INF: FPGA: 'ZDACW 37519' command took 3 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:08:35.328 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:35.328 -07 000000626 INF: FPGA: Recv ZDACR 37519
17-03-17 21:08:35.338 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:08:35.338 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:35.338 -07 000000429 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 21:08:35.488 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 21:08:35.488 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 21:08:35.488 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:35.488 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:08:35.488 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:08:35.488 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:08:35.488 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:35.498 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:08:35.498 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:08:35.498 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:08:35.708 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:08:35.708 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 21:08:35.748 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:35.758 -07 000000626 INF: FPGA: Recv YRDPOS 129481
17-03-17 21:08:35.758 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:08:35.758 -07 000000576 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:35.758 -07 000000576 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:08:35.758 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.126 mm/sec
17-03-17 21:08:36.708 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:36.708 -07 000000429 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:08:36.718 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:36.718 -07 000000576 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:36.738 -07 000000576 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:08:36.738 -07 000000576 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:08:36.738 -07 000000576 INF: Y Motor: Moved to 63.2236 after 1433 ms (table move)
17-03-17 21:08:36.738 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171751 mm (DAC = 37519)
17-03-17 21:08:36.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:36.738 -07 000000429 INF: FPGA: Recv ZSGSRD 36031
17-03-17 21:08:36.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:08:36.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:36.748 -07 000000431 INF: FPGA: Recv ZSGSRD 36022
17-03-17 21:08:36.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:36.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:36.758 -07 000000429 INF: FPGA: Recv ZSGSRD 36024
17-03-17 21:08:36.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:36.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:36.768 -07 000000576 INF: FPGA: Recv ZSGSRD 36025
17-03-17 21:08:36.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:36.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:36.778 -07 000000429 INF: FPGA: Recv ZSGSRD 36028
17-03-17 21:08:36.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:36.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:36.788 -07 000000541 INF: FPGA: Recv ZSGSRD 36037
17-03-17 21:08:36.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:36.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:36.798 -07 000000382 INF: FPGA: Recv ZSGSRD 36024
17-03-17 21:08:36.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:36.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:36.808 -07 000000541 INF: FPGA: Recv ZSGSRD 36021
17-03-17 21:08:36.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:36.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:36.818 -07 000000429 INF: FPGA: Recv ZSGSRD 36021
17-03-17 21:08:36.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:36.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:36.828 -07 000000576 INF: FPGA: Recv ZSGSRD 36020
17-03-17 21:08:36.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:36.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:36.838 -07 000000382 INF: FPGA: Recv ZPIEZORD 32186
17-03-17 21:08:36.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:36.848 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.725 V. Piezo Error = -8.5 V.
17-03-17 21:08:36.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36025 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36024 (-170.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36020 (-170.8 uncal um), Max = 36037 (-171.0 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:08:36.848 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36025, posNoise = 12, negNoise = 5
17-03-17 21:08:36.848 -07 000000610 INF: Z Motor: After move to -0.171751, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:36.848 -07 000000610 INF: Z Motor: Settle wait time = 1436 ms, measure time = 104 ms (allowed 150 ms), total time = 1540 ms
17-03-17 21:08:36.848 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:08:36.848 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:08:36.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:08:36.898 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 21:08:36.898 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:08:36.898 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.171755594418073. ----------
17-03-17 21:08:36.898 -07 000000610 INF: Cycle	47	Tile	5	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:08:36.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37342, sync = True, waitForSettling = True)
17-03-17 21:08:36.898 -07 000000610 INF: Z Motor: Moving to -0.170941 mm, started at -0.171756 mm, distance = 0.81 um
17-03-17 21:08:36.898 -07 000000610 INF: FPGA: Xmit ZDACW 37342\n [Z Motor]
17-03-17 21:08:36.898 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:08:36.908 -07 000000610 INF: FPGA: 'ZDACW 37342' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:08:36.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:36.908 -07 000000541 INF: FPGA: Recv ZDACR 37342
17-03-17 21:08:36.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:36.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:08:37.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:37.068 -07 000000431 INF: FPGA: Recv ZSGSRD 35903
17-03-17 21:08:37.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:37.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:37.078 -07 000000576 INF: FPGA: Recv ZSGSRD 35903
17-03-17 21:08:37.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:37.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:37.088 -07 000000431 INF: FPGA: Recv ZSGSRD 35902
17-03-17 21:08:37.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:37.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:37.098 -07 000000429 INF: FPGA: Recv ZSGSRD 35899
17-03-17 21:08:37.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:37.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:37.108 -07 000000382 INF: FPGA: Recv ZSGSRD 35904
17-03-17 21:08:37.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:37.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:37.118 -07 000000541 INF: FPGA: Recv ZSGSRD 35902
17-03-17 21:08:37.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:37.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:37.128 -07 000000382 INF: FPGA: Recv ZSGSRD 35897
17-03-17 21:08:37.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:37.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:37.138 -07 000000429 INF: FPGA: Recv ZSGSRD 35900
17-03-17 21:08:37.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:37.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:37.148 -07 000000576 INF: FPGA: Recv ZSGSRD 35901
17-03-17 21:08:37.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:37.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:37.158 -07 000000541 INF: FPGA: Recv ZSGSRD 35894
17-03-17 21:08:37.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:37.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:37.168 -07 000000382 INF: FPGA: Recv ZPIEZORD 31994
17-03-17 21:08:37.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:37.178 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.698 V. Piezo Error = -8.6 V.
17-03-17 21:08:37.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35900 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35902 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35894 (-170.0 uncal um), Max = 35904 (-170.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:08:37.178 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35900, posNoise = 4, negNoise = 6
17-03-17 21:08:37.178 -07 000000610 INF: Z Motor: After move to -0.170941, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:37.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:08:37.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:08:37.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:08:37.178 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:08:37.178 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:08:37.178 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:08:37.178 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:08:37.178 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:08:37.178 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:08:37.178 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:08:37.178 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:08:37.178 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:08:37.178 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:08:37.188 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:08:37.188 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:08:37.188 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:08:37.188 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:08:37.198 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 21:08:37.198 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:08:37.198 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 21:08:37.198 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:08:37.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37519 150\n [Camera]
17-03-17 21:08:37.398 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:08:37.828 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:08:37.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:08:37.828 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:37.828 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:08:37.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:08:37.828 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:37.838 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:37.838 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:08:37.838 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:37.838 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:08:38.018 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37519 811
17-03-17 21:08:38.168 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:08:38.208 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 21:08:38.208 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 21:08:38.208 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:38.208 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:08:38.208 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:08:38.208 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:38.218 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:08:38.218 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:08:38.218 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:08:38.228 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:08:38.378 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:08:38.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:08:38.378 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:38.378 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:08:38.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:08:38.388 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:38.388 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 21:08:38.388 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:38.388 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:38.388 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 21:08:38.568 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-17 21:08:38.568 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:08:38.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37519 150' command took 2 ms to send, 1353 ms to get response, and 1365 ms overall
17-03-17 21:08:38.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:08:38.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170952567900353. ------
17-03-17 21:08:38.568 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:08:38.568 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17736 mm
17-03-17 21:08:38.568 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:08:38.578 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:08:38.578 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:08:38.578 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:08:38.578 -07 000000541 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 21:08:38.578 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:38.578 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38744, sync = True, waitForSettling = False)
17-03-17 21:08:38.578 -07 000000618 INF: Z Motor: Moving to -0.177359 mm, started at -0.170953 mm, distance = -6.41 um
17-03-17 21:08:38.578 -07 000000429 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:08:38.588 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:08:38.588 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:08:38.588 -07 000000541 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:38.588 -07 000000541 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:08:38.588 -07 000000541 INF: Y Motor: Moving 1342 steps-19
17-03-17 21:08:38.598 -07 000000618 INF: FPGA: Xmit ZDACW 38744\n [Z Motor]
17-03-17 21:08:38.598 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:08:38.608 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:08:38.608 -07 000000618 INF: FPGA: 'ZDACW 38744' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:08:38.618 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:38.618 -07 000000438 INF: FPGA: Recv ZDACR 38744
17-03-17 21:08:38.628 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:08:38.628 -07 000000618 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:08:38.758 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:08:38.758 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:08:38.758 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:38.768 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:08:38.768 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:08:38.768 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:08:38.768 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:38.768 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:08:38.768 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:08:38.778 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:08:38.788 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:08:38.788 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-17 21:08:38.978 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:08:38.978 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:08:39.018 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:39.028 -07 000000576 INF: FPGA: Recv YRDPOS 131187
17-03-17 21:08:39.028 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 21:08:39.028 -07 000000541 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:39.028 -07 000000541 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 21:08:39.028 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 21:08:39.398 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.014009,
17-03-17 21:08:39.978 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:39.978 -07 000000438 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:08:39.988 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:39.988 -07 000000541 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:40.008 -07 000000541 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:08:40.008 -07 000000541 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:08:40.008 -07 000000541 INF: Y Motor: Moved to 64.0566 after 1429 ms (table move)
17-03-17 21:08:40.008 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177359 mm (DAC = 38744)
17-03-17 21:08:40.008 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:40.008 -07 000000438 INF: FPGA: Recv ZSGSRD 36901
17-03-17 21:08:40.018 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:08:40.018 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:40.018 -07 000000438 INF: FPGA: Recv ZSGSRD 36902
17-03-17 21:08:40.028 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:40.028 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:40.028 -07 000000618 INF: FPGA: Recv ZSGSRD 36898
17-03-17 21:08:40.038 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:40.038 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:40.038 -07 000000429 INF: FPGA: Recv ZSGSRD 36899
17-03-17 21:08:40.048 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:40.048 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:40.048 -07 000000012 INF: FPGA: Recv ZSGSRD 36902
17-03-17 21:08:40.058 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:40.058 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:40.058 -07 000000618 INF: FPGA: Recv ZSGSRD 36898
17-03-17 21:08:40.068 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:40.068 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:40.068 -07 000000541 INF: FPGA: Recv ZSGSRD 36895
17-03-17 21:08:40.078 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:40.078 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:40.078 -07 000000438 INF: FPGA: Recv ZSGSRD 36895
17-03-17 21:08:40.088 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:40.088 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:40.088 -07 000000012 INF: FPGA: Recv ZSGSRD 36902
17-03-17 21:08:40.098 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:40.098 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:40.098 -07 000000618 INF: FPGA: Recv ZSGSRD 36906
17-03-17 21:08:40.108 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:40.108 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:40.108 -07 000000012 INF: FPGA: Recv ZPIEZORD 33296
17-03-17 21:08:40.118 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:40.118 -07 000000627 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.912 V. Piezo Error = -8.0 V.
17-03-17 21:08:40.118 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36900 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36900 (-176.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36895 (-176.5 uncal um), Max = 36906 (-176.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:08:40.118 -07 000000627 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36900, posNoise = 6, negNoise = 5
17-03-17 21:08:40.118 -07 000000627 INF: Z Motor: After move to -0.177359, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:40.118 -07 000000627 INF: Z Motor: Settle wait time = 1432 ms, measure time = 105 ms (allowed 150 ms), total time = 1537 ms
17-03-17 21:08:40.118 -07 000000627 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:08:40.168 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 21:08:40.168 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:08:40.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:08:40.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:08:40.168 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:08:40.168 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:08:40.168 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:08:40.168 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:08:40.168 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:08:40.168 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:08:40.178 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:08:40.178 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:08:40.188 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:08:40.188 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:08:40.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:08:40.238 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:08:40.428 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:08:40.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:08:40.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:08:40.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) start.
17-03-17 21:08:40.468 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:08:40.478 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 21:08:40.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 21:08:40.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2585563240, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:08:40.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:40.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:08:40.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:08:40.578 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:08:40.578 -07 000000012 INF: Autofocus start
17-03-17 21:08:40.578 -07 000000012 INF: MeasureProfile start
17-03-17 21:08:40.578 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:08:40.588 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:08:40.588 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:08:40.588 -07 000000012 INF: MeasureProfile done
17-03-17 21:08:40.588 -07 000000012 INF: X=48  Z correction [um]=0.1739867
17-03-17 21:08:40.588 -07 000000012 INF: Autofocus finished
17-03-17 21:08:40.788 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:08:40.788 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:08:40.788 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.177376780042114. ----------
17-03-17 21:08:40.788 -07 000000610 INF: Cycle	47	Tile	6	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:08:40.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37294, sync = True, waitForSettling = True)
17-03-17 21:08:40.798 -07 000000610 INF: Z Motor: Moving to -0.170721 mm, started at -0.177377 mm, distance = 6.66 um
17-03-17 21:08:40.798 -07 000000610 INF: FPGA: Xmit ZDACW 37294\n [Z Motor]
17-03-17 21:08:40.798 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 21:08:40.808 -07 000000610 INF: FPGA: 'ZDACW 37294' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:40.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:40.808 -07 000000618 INF: FPGA: Recv ZDACR 37294
17-03-17 21:08:40.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:40.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:08:40.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:40.968 -07 000000429 INF: FPGA: Recv ZSGSRD 35872
17-03-17 21:08:40.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:40.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:40.978 -07 000000438 INF: FPGA: Recv ZSGSRD 35862
17-03-17 21:08:40.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:40.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:40.988 -07 000000541 INF: FPGA: Recv ZSGSRD 35868
17-03-17 21:08:40.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:40.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:40.998 -07 000000012 INF: FPGA: Recv ZSGSRD 35865
17-03-17 21:08:41.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:41.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:41.008 -07 000000541 INF: FPGA: Recv ZSGSRD 35856
17-03-17 21:08:41.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:41.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:41.018 -07 000000012 INF: FPGA: Recv ZSGSRD 35870
17-03-17 21:08:41.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:41.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:41.028 -07 000000541 INF: FPGA: Recv ZSGSRD 35864
17-03-17 21:08:41.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:41.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:41.038 -07 000000429 INF: FPGA: Recv ZSGSRD 35867
17-03-17 21:08:41.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:41.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:41.048 -07 000000429 INF: FPGA: Recv ZSGSRD 35866
17-03-17 21:08:41.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:41.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:41.058 -07 000000627 INF: FPGA: Recv ZSGSRD 35870
17-03-17 21:08:41.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:41.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:41.068 -07 000000429 INF: FPGA: Recv ZPIEZORD 31941
17-03-17 21:08:41.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:41.078 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.691 V. Piezo Error = -8.7 V.
17-03-17 21:08:41.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35866 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35866 (-169.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35856 (-169.8 uncal um), Max = 35872 (-169.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:08:41.078 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35866, posNoise = 6, negNoise = 10
17-03-17 21:08:41.078 -07 000000610 INF: Z Motor: After move to -0.170721, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:41.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:08:41.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:08:41.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:08:41.078 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:08:41.078 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:08:41.078 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:08:41.078 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:08:41.078 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:08:41.078 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:08:41.078 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:08:41.078 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:08:41.078 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:08:41.078 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:08:41.088 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:08:41.088 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:08:41.088 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:08:41.088 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:08:41.098 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:08:41.098 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:08:41.098 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:08:41.098 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:08:41.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37471 150\n [Camera]
17-03-17 21:08:41.298 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:08:41.728 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:08:41.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:08:41.728 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:41.728 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:08:41.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:08:41.728 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:41.738 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:41.738 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2604644624, 0x0, 391868352) start.
17-03-17 21:08:41.738 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:41.738 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 21:08:41.848 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:08:41.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:08:41.918 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37471 811
17-03-17 21:08:42.068 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:08:42.108 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2604644624, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 21:08:42.108 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 21:08:42.108 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:42.118 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:08:42.118 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:08:42.118 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:42.118 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:08:42.118 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:08:42.118 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:08:42.128 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:08:42.278 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:08:42.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:08:42.278 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:42.398 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:08:42.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:08:42.398 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:42.398 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:42.398 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:08:42.408 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:42.408 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:08:42.468 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:08:42.468 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:08:42.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37471 150' command took 2 ms to send, 1355 ms to get response, and 1365 ms overall
17-03-17 21:08:42.468 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.171229
17-03-17 21:08:42.468 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17123 mm
17-03-17 21:08:42.468 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:08:42.478 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:08:42.478 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37405, sync = True, waitForSettling = False)
17-03-17 21:08:42.478 -07 000000618 INF: Z Motor: Moving to -0.171229 mm, started at -0.170734 mm, distance = -0.49 um
17-03-17 21:08:42.478 -07 000000618 INF: FPGA: Xmit ZDACW 37405\n [Z Motor]
17-03-17 21:08:42.478 -07 000000541 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 21:08:42.478 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:08:42.488 -07 000000618 INF: FPGA: 'ZDACW 37405' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:08:42.488 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:42.488 -07 000000626 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:08:42.498 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:08:42.498 -07 000000541 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:42.498 -07 000000541 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:08:42.498 -07 000000541 INF: Y Motor: Moving 1338 steps-13
17-03-17 21:08:42.498 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:08:42.508 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:42.508 -07 000000438 INF: FPGA: Recv ZDACR 37405
17-03-17 21:08:42.518 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:08:42.518 -07 000000618 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 21:08:42.778 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:08:42.778 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:08:42.778 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:42.788 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:08:42.788 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:08:42.788 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:42.788 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:08:42.788 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:08:42.788 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-17 21:08:42.798 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:08:42.868 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:08:42.868 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-17 21:08:42.908 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:42.908 -07 000000476 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:08:42.918 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:08:42.918 -07 000000541 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:42.918 -07 000000541 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:08:42.918 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.836 mm, average velocity = 2.212 mm/sec
17-03-17 21:08:43.868 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:43.868 -07 000000429 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:08:43.878 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:43.878 -07 000000541 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:43.898 -07 000000541 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:08:43.898 -07 000000541 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:08:43.898 -07 000000541 INF: Y Motor: Moved to 64.8784 after 1423 ms (table move)
17-03-17 21:08:43.898 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171229 mm (DAC = 37405)
17-03-17 21:08:43.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:43.898 -07 000000476 INF: FPGA: Recv ZSGSRD 35940
17-03-17 21:08:43.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:08:43.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:43.908 -07 000000476 INF: FPGA: Recv ZSGSRD 35940
17-03-17 21:08:43.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:43.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:43.918 -07 000000476 INF: FPGA: Recv ZSGSRD 35948
17-03-17 21:08:43.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:43.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:43.928 -07 000000476 INF: FPGA: Recv ZSGSRD 35952
17-03-17 21:08:43.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:43.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:43.938 -07 000000541 INF: FPGA: Recv ZSGSRD 35949
17-03-17 21:08:43.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:43.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:43.948 -07 000000476 INF: FPGA: Recv ZSGSRD 35941
17-03-17 21:08:43.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:43.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:43.958 -07 000000501 INF: FPGA: Recv ZSGSRD 35947
17-03-17 21:08:43.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:08:43.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:43.968 -07 000000627 INF: FPGA: Recv ZSGSRD 35939
17-03-17 21:08:43.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:43.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:43.978 -07 000000431 INF: FPGA: Recv ZSGSRD 35941
17-03-17 21:08:43.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:43.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:43.988 -07 000000618 INF: FPGA: Recv ZSGSRD 35944
17-03-17 21:08:43.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:43.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:43.998 -07 000000012 INF: FPGA: Recv ZPIEZORD 32079
17-03-17 21:08:44.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:44.008 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.708 V. Piezo Error = -8.5 V.
17-03-17 21:08:44.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35944 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35942 (-170.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35939 (-170.3 uncal um), Max = 35952 (-170.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:08:44.008 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35944, posNoise = 8, negNoise = 5
17-03-17 21:08:44.008 -07 000000610 INF: Z Motor: After move to -0.171229, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:44.008 -07 000000610 INF: Z Motor: Settle wait time = 1425 ms, measure time = 104 ms (allowed 150 ms), total time = 1529 ms
17-03-17 21:08:44.008 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:08:44.058 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-17 21:08:44.058 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:08:44.058 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.171235233234591. ----------
17-03-17 21:08:44.058 -07 000000610 INF: Cycle	47	Tile	7	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:08:44.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37228, sync = True, waitForSettling = True)
17-03-17 21:08:44.058 -07 000000610 INF: Z Motor: Moving to -0.170419 mm, started at -0.171235 mm, distance = 0.82 um
17-03-17 21:08:44.058 -07 000000610 INF: FPGA: Xmit ZDACW 37228\n [Z Motor]
17-03-17 21:08:44.058 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:08:44.068 -07 000000610 INF: FPGA: 'ZDACW 37228' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:08:44.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:44.068 -07 000000501 INF: FPGA: Recv ZDACR 37228
17-03-17 21:08:44.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:44.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:08:44.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:44.228 -07 000000627 INF: FPGA: Recv ZSGSRD 35824
17-03-17 21:08:44.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:44.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:44.238 -07 000000626 INF: FPGA: Recv ZSGSRD 35816
17-03-17 21:08:44.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:44.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:44.248 -07 000000626 INF: FPGA: Recv ZSGSRD 35824
17-03-17 21:08:44.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:44.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:44.258 -07 000000626 INF: FPGA: Recv ZSGSRD 35816
17-03-17 21:08:44.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:44.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:44.268 -07 000000626 INF: FPGA: Recv ZSGSRD 35817
17-03-17 21:08:44.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:44.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:44.278 -07 000000627 INF: FPGA: Recv ZSGSRD 35819
17-03-17 21:08:44.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:44.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:44.288 -07 000000501 INF: FPGA: Recv ZSGSRD 35815
17-03-17 21:08:44.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:44.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:44.298 -07 000000438 INF: FPGA: Recv ZSGSRD 35826
17-03-17 21:08:44.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:44.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:44.308 -07 000000012 INF: FPGA: Recv ZSGSRD 35819
17-03-17 21:08:44.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:44.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:44.318 -07 000000012 INF: FPGA: Recv ZSGSRD 35817
17-03-17 21:08:44.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:44.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:44.328 -07 000000012 INF: FPGA: Recv ZPIEZORD 31902
17-03-17 21:08:44.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:44.338 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.681 V. Piezo Error = -8.7 V.
17-03-17 21:08:44.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35819 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35818 (-169.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35815 (-169.5 uncal um), Max = 35826 (-169.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:08:44.338 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35819, posNoise = 7, negNoise = 4
17-03-17 21:08:44.338 -07 000000610 INF: Z Motor: After move to -0.170419, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:44.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:08:44.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:08:44.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:08:44.338 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:08:44.338 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:08:44.338 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:08:44.338 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:08:44.338 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:08:44.338 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:08:44.338 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:08:44.338 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:08:44.338 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:08:44.338 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:08:44.348 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:08:44.348 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:08:44.348 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:08:44.348 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:08:44.348 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:08:44.348 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:08:44.358 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:08:44.358 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:08:44.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37405 150\n [Camera]
17-03-17 21:08:44.558 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:08:44.758 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.020806,
17-03-17 21:08:44.978 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:08:44.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:08:44.978 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:44.988 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:08:44.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:08:44.988 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:44.988 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:44.988 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 21:08:44.988 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:44.988 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:08:45.178 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37405 811
17-03-17 21:08:45.328 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:08:45.368 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:08:45.368 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:08:45.368 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:45.368 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:08:45.368 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:08:45.368 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:45.368 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:08:45.368 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:08:45.368 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:08:45.378 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:08:45.528 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:08:45.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:08:45.528 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:45.638 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:08:45.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:08:45.638 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:45.648 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:45.648 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:08:45.648 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:45.648 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:08:45.718 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-17 21:08:45.718 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:08:45.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37405 150' command took 2 ms to send, 1358 ms to get response, and 1366 ms overall
17-03-17 21:08:45.728 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.171072
17-03-17 21:08:45.728 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17107 mm
17-03-17 21:08:45.728 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:08:45.728 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:08:45.728 -07 000000626 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 21:08:45.728 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:45.728 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 37371, sync = True, waitForSettling = False)
17-03-17 21:08:45.728 -07 000000433 INF: Z Motor: Moving to -0.171073 mm, started at -0.170432 mm, distance = -0.64 um
17-03-17 21:08:45.728 -07 000000012 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:08:45.738 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:08:45.738 -07 000000626 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:45.738 -07 000000433 INF: FPGA: Xmit ZDACW 37371\n [Z Motor]
17-03-17 21:08:45.738 -07 000000626 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:08:45.738 -07 000000626 INF: Y Motor: Moving 1351 steps-29
17-03-17 21:08:45.738 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:08:45.748 -07 000000433 INF: FPGA: 'ZDACW 37371' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:08:45.748 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:45.748 -07 000000627 INF: FPGA: Recv ZDACR 37371
17-03-17 21:08:45.758 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:08:45.758 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:45.758 -07 000000433 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 21:08:46.038 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:08:46.038 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:08:46.038 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:46.038 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:08:46.038 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:08:46.038 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:46.048 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:08:46.048 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:08:46.048 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 21:08:46.048 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 21:08:46.128 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:08:46.128 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:08:46.168 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:46.168 -07 000000501 INF: FPGA: Recv YRDPOS 134581
17-03-17 21:08:46.178 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:08:46.178 -07 000000626 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:46.178 -07 000000626 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:08:46.178 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 21:08:46.848 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:08:46.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:08:47.128 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:47.128 -07 000000012 INF: FPGA: Recv YRDPOS 134581
17-03-17 21:08:47.138 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:47.138 -07 000000626 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:47.158 -07 000000626 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:08:47.158 -07 000000626 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:08:47.158 -07 000000626 INF: Y Motor: Moved to 65.7134 after 1435 ms (table move)
17-03-17 21:08:47.168 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171073 mm (DAC = 37371)
17-03-17 21:08:47.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.168 -07 000000569 INF: FPGA: Recv ZSGSRD 35915
17-03-17 21:08:47.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:08:47.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.178 -07 000000626 INF: FPGA: Recv ZSGSRD 35923
17-03-17 21:08:47.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.188 -07 000000438 INF: FPGA: Recv ZSGSRD 35925
17-03-17 21:08:47.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.198 -07 000000569 INF: FPGA: Recv ZSGSRD 35923
17-03-17 21:08:47.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.208 -07 000000626 INF: FPGA: Recv ZSGSRD 35920
17-03-17 21:08:47.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.218 -07 000000012 INF: FPGA: Recv ZSGSRD 35917
17-03-17 21:08:47.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.228 -07 000000569 INF: FPGA: Recv ZSGSRD 35920
17-03-17 21:08:47.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.238 -07 000000012 INF: FPGA: Recv ZSGSRD 35920
17-03-17 21:08:47.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.248 -07 000000438 INF: FPGA: Recv ZSGSRD 35922
17-03-17 21:08:47.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.258 -07 000000012 INF: FPGA: Recv ZSGSRD 35926
17-03-17 21:08:47.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:47.268 -07 000000626 INF: FPGA: Recv ZPIEZORD 32039
17-03-17 21:08:47.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.278 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -8.6 V.
17-03-17 21:08:47.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35921 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35921 (-170.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35915 (-170.2 uncal um), Max = 35926 (-170.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:08:47.278 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35921, posNoise = 5, negNoise = 6
17-03-17 21:08:47.278 -07 000000610 INF: Z Motor: After move to -0.171073, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:47.278 -07 000000610 INF: Z Motor: Settle wait time = 1437 ms, measure time = 109 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:08:47.278 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 21:08:47.328 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 21:08:47.328 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:08:47.328 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.17108747635533. ----------
17-03-17 21:08:47.328 -07 000000610 INF: Cycle	47	Tile	8	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:08:47.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37194, sync = True, waitForSettling = True)
17-03-17 21:08:47.328 -07 000000610 INF: Z Motor: Moving to -0.170263 mm, started at -0.171087 mm, distance = 0.82 um
17-03-17 21:08:47.328 -07 000000610 INF: FPGA: Xmit ZDACW 37194\n [Z Motor]
17-03-17 21:08:47.328 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:08:47.338 -07 000000610 INF: FPGA: 'ZDACW 37194' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:08:47.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:47.338 -07 000000569 INF: FPGA: Recv ZDACR 37194
17-03-17 21:08:47.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:08:47.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.498 -07 000000501 INF: FPGA: Recv ZSGSRD 35799
17-03-17 21:08:47.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:47.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.508 -07 000000569 INF: FPGA: Recv ZSGSRD 35797
17-03-17 21:08:47.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.518 -07 000000501 INF: FPGA: Recv ZSGSRD 35795
17-03-17 21:08:47.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.528 -07 000000382 INF: FPGA: Recv ZSGSRD 35798
17-03-17 21:08:47.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.538 -07 000000626 INF: FPGA: Recv ZSGSRD 35793
17-03-17 21:08:47.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.548 -07 000000382 INF: FPGA: Recv ZSGSRD 35792
17-03-17 21:08:47.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.558 -07 000000626 INF: FPGA: Recv ZSGSRD 35797
17-03-17 21:08:47.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.568 -07 000000382 INF: FPGA: Recv ZSGSRD 35798
17-03-17 21:08:47.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.578 -07 000000626 INF: FPGA: Recv ZSGSRD 35798
17-03-17 21:08:47.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:47.588 -07 000000576 INF: FPGA: Recv ZSGSRD 35790
17-03-17 21:08:47.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:47.598 -07 000000438 INF: FPGA: Recv ZPIEZORD 31856
17-03-17 21:08:47.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:47.608 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.675 V. Piezo Error = -8.7 V.
17-03-17 21:08:47.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35796 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35797 (-169.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35790 (-169.4 uncal um), Max = 35799 (-169.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:08:47.608 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35796, posNoise = 3, negNoise = 6
17-03-17 21:08:47.608 -07 000000610 INF: Z Motor: After move to -0.170263, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:47.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 21:08:47.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:08:47.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:08:47.608 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:08:47.608 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:08:47.608 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:08:47.608 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:08:47.608 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:08:47.608 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:08:47.608 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:08:47.608 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:08:47.608 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:08:47.608 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:08:47.618 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:08:47.618 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:08:47.618 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:08:47.618 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:08:47.628 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:08:47.628 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:08:47.628 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:08:47.628 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 21:08:47.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37371 150\n [Camera]
17-03-17 21:08:47.828 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:08:48.258 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:08:48.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:08:48.258 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:48.268 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:08:48.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:08:48.268 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:48.268 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:48.268 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start.
17-03-17 21:08:48.268 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:48.268 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:08:48.448 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37371 811
17-03-17 21:08:48.598 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:08:48.648 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:08:48.648 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:08:48.648 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:48.648 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:08:48.648 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:08:48.648 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:48.648 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:08:48.658 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:08:48.658 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:08:48.658 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:08:48.808 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:08:48.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:08:48.808 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:48.808 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:08:48.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:08:48.808 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:48.808 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:48.808 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 21:08:48.818 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:48.818 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 21:08:48.998 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-17 21:08:48.998 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:08:48.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37371 150' command took 2 ms to send, 1355 ms to get response, and 1365 ms overall
17-03-17 21:08:48.998 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.170622
17-03-17 21:08:48.998 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17062 mm
17-03-17 21:08:48.998 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:08:48.998 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:08:49.008 -07 000000438 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-17 21:08:49.008 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:49.008 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37272, sync = True, waitForSettling = False)
17-03-17 21:08:49.008 -07 000000576 INF: Z Motor: Moving to -0.170620 mm, started at -0.170284 mm, distance = -0.34 um
17-03-17 21:08:49.018 -07 000000576 INF: FPGA: Xmit ZDACW 37272\n [Z Motor]
17-03-17 21:08:49.188 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:08:49.188 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:08:49.188 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:49.188 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:08:49.188 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:08:49.188 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:49.198 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:08:49.198 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:08:49.198 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:08:49.198 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:08:49.208 -07 000000382 INF: FPGA: Recv YRDPOS 134581
17-03-17 21:08:49.208 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:08:49.208 -07 000000576 INF: FPGA: 'ZDACW 37272' command took 0 ms to send, 181 ms to get response, and 200 ms overall
17-03-17 21:08:49.208 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:49.208 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 190 ms to get response, and 200 ms overall
17-03-17 21:08:49.208 -07 000000438 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:49.208 -07 000000438 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:08:49.208 -07 000000438 INF: Y Motor: Moving 1343 steps-19
17-03-17 21:08:49.208 -07 000000382 INF: FPGA: Recv ZDACR 37272
17-03-17 21:08:49.218 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:08:49.218 -07 000000576 INF: Z Motor: MoveAbsStepped took 209 ms (did NOT wait for settling yet))
17-03-17 21:08:49.218 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:08:49.588 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:08:49.588 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 21:08:49.628 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:49.628 -07 000000576 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:08:49.638 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:08:49.638 -07 000000438 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:49.638 -07 000000438 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:08:49.638 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.839 mm, average velocity = 2.174 mm/sec
17-03-17 21:08:50.118 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.993549,
17-03-17 21:08:50.588 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:50.588 -07 000000382 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:08:50.598 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:50.598 -07 000000438 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:50.618 -07 000000438 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:08:50.618 -07 000000438 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:08:50.618 -07 000000438 INF: Y Motor: Moved to 66.5386 after 1617 ms (table move)
17-03-17 21:08:50.618 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170620 mm (DAC = 37272)
17-03-17 21:08:50.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:50.628 -07 000000541 INF: FPGA: Recv ZSGSRD 35844
17-03-17 21:08:50.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:50.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:50.638 -07 000000541 INF: FPGA: Recv ZSGSRD 35851
17-03-17 21:08:50.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:50.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:50.648 -07 000000438 INF: FPGA: Recv ZSGSRD 35855
17-03-17 21:08:50.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:50.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:50.658 -07 000000438 INF: FPGA: Recv ZSGSRD 35852
17-03-17 21:08:50.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:50.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:50.668 -07 000000438 INF: FPGA: Recv ZSGSRD 35847
17-03-17 21:08:50.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:50.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:50.678 -07 000000382 INF: FPGA: Recv ZSGSRD 35851
17-03-17 21:08:50.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:50.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:50.688 -07 000000627 INF: FPGA: Recv ZSGSRD 35852
17-03-17 21:08:50.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:50.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:50.698 -07 000000627 INF: FPGA: Recv ZSGSRD 35847
17-03-17 21:08:50.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:50.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:50.708 -07 000000415 INF: FPGA: Recv ZSGSRD 35852
17-03-17 21:08:50.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:50.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:50.718 -07 000000541 INF: FPGA: Recv ZSGSRD 35856
17-03-17 21:08:50.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:50.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:50.728 -07 000000541 INF: FPGA: Recv ZPIEZORD 31912
17-03-17 21:08:50.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:50.738 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -8.7 V.
17-03-17 21:08:50.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35851 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35852 (-169.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35844 (-169.7 uncal um), Max = 35856 (-169.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:08:50.738 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35851, posNoise = 5, negNoise = 7
17-03-17 21:08:50.738 -07 000000610 INF: Z Motor: After move to -0.170620, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:50.738 -07 000000610 INF: Z Motor: Settle wait time = 1618 ms, measure time = 111 ms (allowed 150 ms), total time = 1729 ms
17-03-17 21:08:50.738 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 21:08:50.778 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1771 ms
17-03-17 21:08:50.778 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:08:50.778 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.170637781505407. ----------
17-03-17 21:08:50.778 -07 000000610 INF: Cycle	47	Tile	9	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:08:50.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37096, sync = True, waitForSettling = True)
17-03-17 21:08:50.778 -07 000000610 INF: Z Motor: Moving to -0.169815 mm, started at -0.170638 mm, distance = 0.82 um
17-03-17 21:08:50.778 -07 000000610 INF: FPGA: Xmit ZDACW 37096\n [Z Motor]
17-03-17 21:08:50.778 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:08:50.788 -07 000000610 INF: FPGA: 'ZDACW 37096' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:08:50.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:50.788 -07 000000438 INF: FPGA: Recv ZDACR 37096
17-03-17 21:08:50.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:50.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:08:50.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:50.948 -07 000000438 INF: FPGA: Recv ZSGSRD 35723
17-03-17 21:08:50.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:50.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:50.958 -07 000000438 INF: FPGA: Recv ZSGSRD 35729
17-03-17 21:08:50.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:50.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:50.968 -07 000000438 INF: FPGA: Recv ZSGSRD 35722
17-03-17 21:08:50.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:50.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:50.978 -07 000000382 INF: FPGA: Recv ZSGSRD 35722
17-03-17 21:08:50.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:50.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:50.988 -07 000000382 INF: FPGA: Recv ZSGSRD 35722
17-03-17 21:08:50.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:50.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:50.998 -07 000000382 INF: FPGA: Recv ZSGSRD 35724
17-03-17 21:08:51.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:51.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:51.008 -07 000000382 INF: FPGA: Recv ZSGSRD 35724
17-03-17 21:08:51.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:51.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:51.018 -07 000000576 INF: FPGA: Recv ZSGSRD 35728
17-03-17 21:08:51.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:51.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:51.028 -07 000000576 INF: FPGA: Recv ZSGSRD 35710
17-03-17 21:08:51.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:51.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:51.038 -07 000000433 INF: FPGA: Recv ZSGSRD 35726
17-03-17 21:08:51.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:51.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:51.048 -07 000000429 INF: FPGA: Recv ZPIEZORD 31745
17-03-17 21:08:51.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:51.058 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.660 V. Piezo Error = -8.8 V.
17-03-17 21:08:51.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35723 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35724 (-168.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35710 (-168.9 uncal um), Max = 35729 (-169.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 21:08:51.058 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35723, posNoise = 6, negNoise = 13
17-03-17 21:08:51.058 -07 000000610 INF: Z Motor: After move to -0.169815, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:51.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 21:08:51.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:08:51.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:08:51.058 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:08:51.058 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:08:51.058 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:08:51.058 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:08:51.058 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:08:51.058 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:08:51.058 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:08:51.058 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:08:51.058 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:08:51.058 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:08:51.068 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:08:51.068 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:08:51.068 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:08:51.068 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:08:51.078 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:08:51.078 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:08:51.078 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:08:51.078 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:08:51.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37272 150\n [Camera]
17-03-17 21:08:51.288 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:08:51.708 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:08:51.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:08:51.708 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:51.708 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:08:51.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:08:51.718 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:51.818 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:51.818 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 21:08:51.828 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:51.828 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:08:51.848 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:08:51.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:08:51.898 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37272 811
17-03-17 21:08:52.048 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:08:52.198 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 21:08:52.198 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 21:08:52.198 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:52.198 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:08:52.198 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 481 ms.
17-03-17 21:08:52.198 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:52.198 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:08:52.198 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:08:52.198 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 490 ms.
17-03-17 21:08:52.208 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 492 ms.
17-03-17 21:08:52.258 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:08:52.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:08:52.258 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:52.258 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:52.258 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:08:52.258 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:08:52.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:08:52.268 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:52.268 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:52.268 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start.
17-03-17 21:08:52.448 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:08:52.448 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:08:52.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37272 150' command took 2 ms to send, 1355 ms to get response, and 1365 ms overall
17-03-17 21:08:52.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:08:52.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.169815482351262. ------
17-03-17 21:08:52.458 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:08:52.458 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17667 mm
17-03-17 21:08:52.458 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:08:52.638 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 21:08:52.638 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:08:52.638 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:52.638 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:08:52.638 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:08:52.638 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:52.638 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:08:52.638 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:08:52.648 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:08:52.648 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:08:52.658 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:08:52.658 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 21:08:52.658 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:08:52.658 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:08:52.658 -07 000000541 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 21:08:52.658 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38593, sync = True, waitForSettling = False)
17-03-17 21:08:52.658 -07 000000431 INF: Z Motor: Moving to -0.176667 mm, started at -0.169815 mm, distance = -6.85 um
17-03-17 21:08:52.668 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:52.678 -07 000000431 INF: FPGA: Xmit ZDACW 38593\n [Z Motor]
17-03-17 21:08:53.238 -07 000000012 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:08:53.238 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:08:53.238 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:08:53.238 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 570 ms to get response, and 573 ms overall
17-03-17 21:08:53.238 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 560 ms to get response, and 572 ms overall
17-03-17 21:08:53.238 -07 000000541 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:53.238 -07 000000541 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:08:53.238 -07 000000541 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:08:53.238 -07 000000431 INF: FPGA: 'ZDACW 38593' command took 0 ms to send, 550 ms to get response, and 571 ms overall
17-03-17 21:08:53.238 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:08:53.248 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:53.248 -07 000000415 INF: FPGA: Recv ZDACR 38593
17-03-17 21:08:53.258 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:08:53.258 -07 000000431 INF: Z Motor: MoveAbsStepped took 590 ms (did NOT wait for settling yet))
17-03-17 21:08:53.618 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:08:53.618 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 378 ms overall
17-03-17 21:08:53.648 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:53.658 -07 000000012 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:08:53.658 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 21:08:53.658 -07 000000541 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:53.658 -07 000000541 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 21:08:53.658 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.233 mm/sec
17-03-17 21:08:54.608 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:54.608 -07 000000012 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:08:54.618 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:54.618 -07 000000541 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:54.638 -07 000000541 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:08:54.638 -07 000000541 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:08:54.638 -07 000000541 INF: Y Motor: Moved to 67.3716 after 1981 ms (table move)
17-03-17 21:08:54.648 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176667 mm (DAC = 38593)
17-03-17 21:08:54.648 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:54.648 -07 000000012 INF: FPGA: Recv ZSGSRD 36793
17-03-17 21:08:54.658 -07 000000433 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:08:54.658 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:54.658 -07 000000415 INF: FPGA: Recv ZSGSRD 36793
17-03-17 21:08:54.668 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:54.668 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:54.668 -07 000000012 INF: FPGA: Recv ZSGSRD 36787
17-03-17 21:08:54.678 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:54.678 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:54.678 -07 000000569 INF: FPGA: Recv ZSGSRD 36784
17-03-17 21:08:54.688 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:54.688 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:54.688 -07 000000459 INF: FPGA: Recv ZSGSRD 36786
17-03-17 21:08:54.698 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:54.698 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:54.698 -07 000000541 INF: FPGA: Recv ZSGSRD 36791
17-03-17 21:08:54.708 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:54.708 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:54.708 -07 000000569 INF: FPGA: Recv ZSGSRD 36794
17-03-17 21:08:54.718 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:54.718 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:54.718 -07 000000541 INF: FPGA: Recv ZSGSRD 36796
17-03-17 21:08:54.728 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:54.728 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:54.728 -07 000000569 INF: FPGA: Recv ZSGSRD 36784
17-03-17 21:08:54.738 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:54.738 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:54.738 -07 000000431 INF: FPGA: Recv ZSGSRD 36789
17-03-17 21:08:54.748 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:54.748 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:54.748 -07 000000459 INF: FPGA: Recv ZPIEZORD 33211
17-03-17 21:08:54.758 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:54.758 -07 000000433 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.889 V. Piezo Error = -7.9 V.
17-03-17 21:08:54.758 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36790 (-175.8 uncal um), Error = 0.9 uncal um, Median = 36790 (-175.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36784 (-175.7 uncal um), Max = 36796 (-175.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:08:54.758 -07 000000433 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36790, posNoise = 6, negNoise = 6
17-03-17 21:08:54.758 -07 000000433 INF: Z Motor: After move to -0.176667, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:54.758 -07 000000433 INF: Z Motor: Settle wait time = 1984 ms, measure time = 107 ms (allowed 150 ms), total time = 2091 ms
17-03-17 21:08:54.758 -07 000000433 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 21:08:54.808 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2347 ms
17-03-17 21:08:54.808 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:08:54.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:08:54.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:08:54.808 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:08:54.808 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:08:54.808 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:08:54.808 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:08:54.808 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 21:08:54.808 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:08:54.818 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:08:54.818 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:08:54.828 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:08:54.828 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 21:08:54.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:08:54.868 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:08:55.068 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:08:55.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:08:55.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:08:55.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235338512, 0x0, 559484976) start.
17-03-17 21:08:55.108 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:08:55.108 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:08:55.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 21:08:55.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235338512, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:08:55.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:55.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:08:55.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:08:55.208 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:08:55.208 -07 000000433 INF: Autofocus start
17-03-17 21:08:55.208 -07 000000433 INF: MeasureProfile start
17-03-17 21:08:55.208 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:08:55.218 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:08:55.218 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:08:55.218 -07 000000433 INF: MeasureProfile done
17-03-17 21:08:55.218 -07 000000433 INF: X=-80  Z correction [um]=-0.4885566
17-03-17 21:08:55.218 -07 000000433 INF: Autofocus finished
17-03-17 21:08:55.418 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:08:55.418 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:08:55.418 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.176670116706521. ----------
17-03-17 21:08:55.418 -07 000000610 INF: Cycle	47	Tile	10	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:08:55.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36999, sync = True, waitForSettling = True)
17-03-17 21:08:55.428 -07 000000610 INF: Z Motor: Moving to -0.169371 mm, started at -0.176670 mm, distance = 7.30 um
17-03-17 21:08:55.428 -07 000000610 INF: FPGA: Xmit ZDACW 36999\n [Z Motor]
17-03-17 21:08:55.428 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:08:55.438 -07 000000610 INF: FPGA: 'ZDACW 36999' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:08:55.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:55.438 -07 000000433 INF: FPGA: Recv ZDACR 36999
17-03-17 21:08:55.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:55.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:08:55.478 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.011254,
17-03-17 21:08:55.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:55.598 -07 000000433 INF: FPGA: Recv ZSGSRD 35656
17-03-17 21:08:55.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:55.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:55.608 -07 000000541 INF: FPGA: Recv ZSGSRD 35659
17-03-17 21:08:55.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:55.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:55.618 -07 000000569 INF: FPGA: Recv ZSGSRD 35657
17-03-17 21:08:55.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:55.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:55.638 -07 000000541 INF: FPGA: Recv ZSGSRD 35659
17-03-17 21:08:55.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:08:55.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:55.648 -07 000000433 INF: FPGA: Recv ZSGSRD 35653
17-03-17 21:08:55.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:55.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:55.658 -07 000000459 INF: FPGA: Recv ZSGSRD 35653
17-03-17 21:08:55.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:55.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:55.668 -07 000000012 INF: FPGA: Recv ZSGSRD 35655
17-03-17 21:08:55.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:55.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:55.678 -07 000000569 INF: FPGA: Recv ZSGSRD 35651
17-03-17 21:08:55.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:55.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:55.688 -07 000000433 INF: FPGA: Recv ZSGSRD 35656
17-03-17 21:08:55.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:55.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:55.698 -07 000000626 INF: FPGA: Recv ZSGSRD 35656
17-03-17 21:08:55.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:55.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:55.708 -07 000000541 INF: FPGA: Recv ZPIEZORD 31701
17-03-17 21:08:55.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:55.718 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -8.7 V.
17-03-17 21:08:55.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35656 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35656 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35651 (-168.5 uncal um), Max = 35659 (-168.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:08:55.718 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35656, posNoise = 3, negNoise = 5
17-03-17 21:08:55.718 -07 000000610 INF: Z Motor: After move to -0.169371, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:55.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 21:08:55.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:08:55.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:08:55.718 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:08:55.718 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:08:55.718 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:08:55.718 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:08:55.718 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:08:55.718 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:08:55.718 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:08:55.718 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:08:55.718 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:08:55.718 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:08:55.728 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:08:55.728 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:08:55.728 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:08:55.728 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:08:55.738 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 21:08:55.738 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:08:55.738 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 21:08:55.738 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:08:55.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37176 150\n [Camera]
17-03-17 21:08:55.938 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:08:56.368 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:08:56.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:08:56.368 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:56.368 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:08:56.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:08:56.368 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:56.378 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:56.378 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:08:56.378 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:56.378 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:08:56.558 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37176 811
17-03-17 21:08:56.708 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:08:56.758 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 21:08:56.758 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:08:56.758 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:56.768 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 21:08:56.768 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:08:56.768 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:56.768 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:08:56.768 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:08:56.768 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:08:56.778 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:08:56.848 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:08:56.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:08:56.918 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:08:56.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:08:56.918 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:56.918 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:08:56.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:08:57.028 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:57.028 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:57.028 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 21:08:57.028 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:57.028 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 21:08:57.108 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-17 21:08:57.108 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:08:57.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37176 150' command took 2 ms to send, 1354 ms to get response, and 1365 ms overall
17-03-17 21:08:57.108 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169762
17-03-17 21:08:57.108 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16976 mm
17-03-17 21:08:57.108 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:08:57.108 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:08:57.108 -07 000000415 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 21:08:57.108 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:57.108 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37084, sync = True, waitForSettling = False)
17-03-17 21:08:57.108 -07 000000431 INF: Z Motor: Moving to -0.169760 mm, started at -0.169385 mm, distance = -0.37 um
17-03-17 21:08:57.118 -07 000000431 INF: FPGA: Xmit ZDACW 37084\n [Z Motor]
17-03-17 21:08:57.118 -07 000000541 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:08:57.118 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:08:57.118 -07 000000415 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:57.118 -07 000000415 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:08:57.118 -07 000000415 INF: Y Motor: Moving 1346 steps-23
17-03-17 21:08:57.118 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 21:08:57.128 -07 000000431 INF: FPGA: 'ZDACW 37084' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:57.128 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:57.128 -07 000000541 INF: FPGA: Recv ZDACR 37084
17-03-17 21:08:57.138 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:08:57.138 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:57.138 -07 000000431 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 21:08:57.428 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:08:57.428 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:08:57.428 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:57.428 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 21:08:57.428 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:08:57.428 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:08:57.428 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:08:57.428 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 21:08:57.438 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:08:57.438 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 21:08:57.508 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:08:57.508 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 21:08:57.548 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:57.548 -07 000000541 INF: FPGA: Recv YRDPOS 139682
17-03-17 21:08:57.558 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:08:57.558 -07 000000415 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:57.558 -07 000000415 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 21:08:57.558 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.841 mm, average velocity = 2.124 mm/sec
17-03-17 21:08:58.508 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:08:58.508 -07 000000541 INF: FPGA: Recv YRDPOS 139682
17-03-17 21:08:58.518 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:58.518 -07 000000415 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:08:58.538 -07 000000415 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:08:58.538 -07 000000415 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:08:58.538 -07 000000415 INF: Y Motor: Moved to 68.2041 after 1426 ms (table move)
17-03-17 21:08:58.538 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169760 mm (DAC = 37084)
17-03-17 21:08:58.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.548 -07 000000012 INF: FPGA: Recv ZSGSRD 35718
17-03-17 21:08:58.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:08:58.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.548 -07 000000012 INF: FPGA: Recv ZSGSRD 35712
17-03-17 21:08:58.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.558 -07 000000541 INF: FPGA: Recv ZSGSRD 35717
17-03-17 21:08:58.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.568 -07 000000431 INF: FPGA: Recv ZSGSRD 35721
17-03-17 21:08:58.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.578 -07 000000541 INF: FPGA: Recv ZSGSRD 35717
17-03-17 21:08:58.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.588 -07 000000012 INF: FPGA: Recv ZSGSRD 35714
17-03-17 21:08:58.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.598 -07 000000415 INF: FPGA: Recv ZSGSRD 35713
17-03-17 21:08:58.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.608 -07 000000012 INF: FPGA: Recv ZSGSRD 35713
17-03-17 21:08:58.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.618 -07 000000012 INF: FPGA: Recv ZSGSRD 35714
17-03-17 21:08:58.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.628 -07 000000431 INF: FPGA: Recv ZSGSRD 35716
17-03-17 21:08:58.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:58.638 -07 000000541 INF: FPGA: Recv ZPIEZORD 31796
17-03-17 21:08:58.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.648 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.659 V. Piezo Error = -8.7 V.
17-03-17 21:08:58.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35716 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35715 (-168.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35712 (-168.9 uncal um), Max = 35721 (-168.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:08:58.648 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35716, posNoise = 5, negNoise = 4
17-03-17 21:08:58.648 -07 000000610 INF: Z Motor: After move to -0.169760, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:58.648 -07 000000610 INF: Z Motor: Settle wait time = 1428 ms, measure time = 103 ms (allowed 150 ms), total time = 1531 ms
17-03-17 21:08:58.648 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:08:58.698 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 21:08:58.698 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:08:58.698 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.169770512866269. ----------
17-03-17 21:08:58.698 -07 000000610 INF: Cycle	47	Tile	11	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:08:58.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36908, sync = True, waitForSettling = True)
17-03-17 21:08:58.698 -07 000000610 INF: Z Motor: Moving to -0.168954 mm, started at -0.169771 mm, distance = 0.82 um
17-03-17 21:08:58.698 -07 000000610 INF: FPGA: Xmit ZDACW 36908\n [Z Motor]
17-03-17 21:08:58.698 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:08:58.708 -07 000000610 INF: FPGA: 'ZDACW 36908' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:08:58.708 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:08:58.708 -07 000000576 INF: FPGA: Recv ZDACR 36908
17-03-17 21:08:58.718 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.718 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:08:58.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.868 -07 000000476 INF: FPGA: Recv ZSGSRD 35591
17-03-17 21:08:58.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:08:58.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.878 -07 000000415 INF: FPGA: Recv ZSGSRD 35595
17-03-17 21:08:58.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.888 -07 000000541 INF: FPGA: Recv ZSGSRD 35589
17-03-17 21:08:58.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.898 -07 000000438 INF: FPGA: Recv ZSGSRD 35586
17-03-17 21:08:58.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.908 -07 000000476 INF: FPGA: Recv ZSGSRD 35589
17-03-17 21:08:58.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.918 -07 000000431 INF: FPGA: Recv ZSGSRD 35589
17-03-17 21:08:58.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.928 -07 000000541 INF: FPGA: Recv ZSGSRD 35589
17-03-17 21:08:58.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.938 -07 000000012 INF: FPGA: Recv ZSGSRD 35595
17-03-17 21:08:58.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.948 -07 000000431 INF: FPGA: Recv ZSGSRD 35594
17-03-17 21:08:58.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:08:58.958 -07 000000012 INF: FPGA: Recv ZSGSRD 35591
17-03-17 21:08:58.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:08:58.968 -07 000000576 INF: FPGA: Recv ZPIEZORD 31611
17-03-17 21:08:58.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:08:58.978 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -8.8 V.
17-03-17 21:08:58.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35591 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35590 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35586 (-168.1 uncal um), Max = 35595 (-168.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:08:58.978 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35591, posNoise = 4, negNoise = 5
17-03-17 21:08:58.978 -07 000000610 INF: Z Motor: After move to -0.168954, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:08:58.978 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:08:58.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:08:58.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:08:58.978 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:08:58.978 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:08:58.978 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:08:58.978 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:08:58.978 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:08:58.978 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:08:58.978 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:08:58.978 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:08:58.978 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:08:58.978 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:08:58.988 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:08:58.988 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:08:58.988 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:08:58.988 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:08:58.998 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:08:58.998 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:08:58.998 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:08:58.998 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:08:58.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37084 150\n [Camera]
17-03-17 21:08:59.198 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:08:59.628 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:08:59.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:08:59.628 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:08:59.628 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:08:59.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:08:59.638 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:08:59.638 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:08:59.638 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:08:59.638 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:08:59.638 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:08:59.818 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37084 811
17-03-17 21:08:59.968 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:09:00.028 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 21:09:00.028 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:09:00.028 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:00.028 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:09:00.028 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:09:00.028 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:00.038 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:00.038 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:00.038 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:09:00.038 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 21:09:00.178 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:09:00.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:09:00.178 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:00.178 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:09:00.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:09:00.178 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:00.178 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:00.178 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:09:00.188 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:00.188 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:09:00.368 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-17 21:09:00.368 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:09:00.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37084 150' command took 2 ms to send, 1354 ms to get response, and 1365 ms overall
17-03-17 21:09:00.368 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.169532
17-03-17 21:09:00.368 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16953 mm
17-03-17 21:09:00.368 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:09:00.368 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:09:00.368 -07 000000626 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-17 21:09:00.368 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:00.368 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 37034, sync = True, waitForSettling = False)
17-03-17 21:09:00.368 -07 000000431 INF: Z Motor: Moving to -0.169531 mm, started at -0.168967 mm, distance = -0.56 um
17-03-17 21:09:00.488 -07 000000431 INF: FPGA: Xmit ZDACW 37034\n [Z Motor]
17-03-17 21:09:00.488 -07 000000576 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:09:00.488 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 115 ms to get response, and 116 ms overall
17-03-17 21:09:00.488 -07 000000626 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:00.488 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:09:00.498 -07 000000431 INF: FPGA: 'ZDACW 37034' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-17 21:09:00.498 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:00.498 -07 000000626 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:09:00.498 -07 000000626 INF: Y Motor: Moving 1341 steps-17
17-03-17 21:09:00.498 -07 000000476 INF: FPGA: Recv ZDACR 37034
17-03-17 21:09:00.508 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:00.508 -07 000000431 INF: Z Motor: MoveAbsStepped took 130 ms (did NOT wait for settling yet))
17-03-17 21:09:00.508 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:09:00.568 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 21:09:00.568 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:09:00.568 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:00.568 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:09:00.568 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:09:00.568 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:00.578 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:00.578 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:00.578 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:09:00.578 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:09:00.838 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.990831,
17-03-17 21:09:00.878 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:09:00.878 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:09:00.918 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:00.918 -07 000000541 INF: FPGA: Recv YRDPOS 141366
17-03-17 21:09:00.928 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:09:00.928 -07 000000626 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:00.928 -07 000000626 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 21:09:00.928 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec
17-03-17 21:09:01.848 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:09:01.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:09:01.878 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:01.878 -07 000000541 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:09:01.888 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:01.888 -07 000000626 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:01.908 -07 000000626 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:09:01.908 -07 000000626 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:09:01.908 -07 000000626 INF: Y Motor: Moved to 69.0269 after 1534 ms (table move)
17-03-17 21:09:01.908 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169531 mm (DAC = 37034)
17-03-17 21:09:01.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:01.908 -07 000000626 INF: FPGA: Recv ZSGSRD 35677
17-03-17 21:09:01.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:09:01.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:01.918 -07 000000626 INF: FPGA: Recv ZSGSRD 35683
17-03-17 21:09:01.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:01.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:01.928 -07 000000541 INF: FPGA: Recv ZSGSRD 35676
17-03-17 21:09:01.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:01.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:01.938 -07 000000476 INF: FPGA: Recv ZSGSRD 35683
17-03-17 21:09:01.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:01.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:01.948 -07 000000541 INF: FPGA: Recv ZSGSRD 35682
17-03-17 21:09:01.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:01.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:01.958 -07 000000541 INF: FPGA: Recv ZSGSRD 35683
17-03-17 21:09:01.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:01.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:01.968 -07 000000431 INF: FPGA: Recv ZSGSRD 35676
17-03-17 21:09:01.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:01.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:01.978 -07 000000541 INF: FPGA: Recv ZSGSRD 35675
17-03-17 21:09:01.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:01.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:01.988 -07 000000626 INF: FPGA: Recv ZSGSRD 35681
17-03-17 21:09:01.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:01.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:01.998 -07 000000541 INF: FPGA: Recv ZSGSRD 35682
17-03-17 21:09:02.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:02.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:02.008 -07 000000541 INF: FPGA: Recv ZPIEZORD 31762
17-03-17 21:09:02.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:02.018 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.651 V. Piezo Error = -8.7 V.
17-03-17 21:09:02.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35680 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35682 (-168.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35675 (-168.6 uncal um), Max = 35683 (-168.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:09:02.018 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35680, posNoise = 3, negNoise = 5
17-03-17 21:09:02.018 -07 000000610 INF: Z Motor: After move to -0.169531, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:02.018 -07 000000610 INF: Z Motor: Settle wait time = 1536 ms, measure time = 106 ms (allowed 150 ms), total time = 1642 ms
17-03-17 21:09:02.018 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 21:09:02.068 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1693 ms
17-03-17 21:09:02.068 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:09:02.068 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.169539241229166. ----------
17-03-17 21:09:02.068 -07 000000610 INF: Cycle	47	Tile	12	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:09:02.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36858, sync = True, waitForSettling = True)
17-03-17 21:09:02.068 -07 000000610 INF: Z Motor: Moving to -0.168725 mm, started at -0.169539 mm, distance = 0.81 um
17-03-17 21:09:02.068 -07 000000610 INF: FPGA: Xmit ZDACW 36858\n [Z Motor]
17-03-17 21:09:02.068 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:09:02.078 -07 000000610 INF: FPGA: 'ZDACW 36858' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:09:02.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:02.078 -07 000000541 INF: FPGA: Recv ZDACR 36858
17-03-17 21:09:02.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:02.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:09:02.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:02.238 -07 000000476 INF: FPGA: Recv ZSGSRD 35558
17-03-17 21:09:02.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:02.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:02.248 -07 000000429 INF: FPGA: Recv ZSGSRD 35558
17-03-17 21:09:02.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:02.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:02.258 -07 000000626 INF: FPGA: Recv ZSGSRD 35554
17-03-17 21:09:02.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:02.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:02.268 -07 000000476 INF: FPGA: Recv ZSGSRD 35559
17-03-17 21:09:02.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:02.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:02.278 -07 000000431 INF: FPGA: Recv ZSGSRD 35555
17-03-17 21:09:02.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:02.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:02.288 -07 000000541 INF: FPGA: Recv ZSGSRD 35551
17-03-17 21:09:02.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:02.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:02.298 -07 000000431 INF: FPGA: Recv ZSGSRD 35556
17-03-17 21:09:02.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:02.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:02.308 -07 000000433 INF: FPGA: Recv ZSGSRD 35555
17-03-17 21:09:02.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:02.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:02.318 -07 000000476 INF: FPGA: Recv ZSGSRD 35556
17-03-17 21:09:02.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:02.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:02.328 -07 000000433 INF: FPGA: Recv ZSGSRD 35552
17-03-17 21:09:02.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:02.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:02.338 -07 000000429 INF: FPGA: Recv ZPIEZORD 31563
17-03-17 21:09:02.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:02.348 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.624 V. Piezo Error = -8.8 V.
17-03-17 21:09:02.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35555 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35556 (-167.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35551 (-167.8 uncal um), Max = 35559 (-167.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:09:02.348 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35555, posNoise = 4, negNoise = 4
17-03-17 21:09:02.348 -07 000000610 INF: Z Motor: After move to -0.168725, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:02.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:09:02.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:02.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:02.348 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:02.348 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:02.348 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:09:02.348 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:02.348 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:09:02.348 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:09:02.348 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:09:02.348 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:09:02.348 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:09:02.348 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:09:02.358 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:09:02.358 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:09:02.358 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:09:02.358 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:09:02.368 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:09:02.368 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:09:02.368 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:09:02.368 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:09:02.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 37034 150\n [Camera]
17-03-17 21:09:02.568 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:09:02.998 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:09:02.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:09:02.998 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:02.998 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:09:02.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:09:03.008 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:03.008 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:03.008 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-17 21:09:03.008 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:03.008 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:09:03.188 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37034 811
17-03-17 21:09:03.338 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:09:03.378 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 366 ms.
17-03-17 21:09:03.378 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-17 21:09:03.378 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:03.378 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 21:09:03.378 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 21:09:03.378 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:03.378 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:09:03.388 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:03.388 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:09:03.388 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:09:03.548 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:09:03.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:09:03.548 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:03.548 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:09:03.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:09:03.548 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:03.548 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:03.548 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:09:03.558 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:03.558 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:09:03.738 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:09:03.738 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:09:03.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 37034 150' command took 2 ms to send, 1355 ms to get response, and 1365 ms overall
17-03-17 21:09:03.738 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.169118
17-03-17 21:09:03.738 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16912 mm
17-03-17 21:09:03.738 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:09:03.748 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:09:03.748 -07 000000429 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 21:09:03.748 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:03.748 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 36944, sync = True, waitForSettling = False)
17-03-17 21:09:03.748 -07 000000476 INF: Z Motor: Moving to -0.169119 mm, started at -0.168736 mm, distance = -0.38 um
17-03-17 21:09:03.748 -07 000000626 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:09:03.758 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:03.758 -07 000000429 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:03.758 -07 000000429 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:09:03.758 -07 000000429 INF: Y Motor: Moving 1353 steps-33
17-03-17 21:09:03.758 -07 000000476 INF: FPGA: Xmit ZDACW 36944\n [Z Motor]
17-03-17 21:09:03.758 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:09:03.768 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:09:03.768 -07 000000476 INF: FPGA: 'ZDACW 36944' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:09:03.778 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:03.778 -07 000000576 INF: FPGA: Recv ZDACR 36944
17-03-17 21:09:03.788 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:09:03.788 -07 000000476 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 21:09:03.938 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:09:03.938 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:09:03.938 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:03.938 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:09:03.938 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:09:03.938 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:03.938 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:09:03.948 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:09:03.948 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:09:03.948 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:09:04.138 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 21:09:04.138 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 21:09:04.178 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:04.178 -07 000000576 INF: FPGA: Recv YRDPOS 143078
17-03-17 21:09:04.188 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:09:04.188 -07 000000429 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:04.188 -07 000000429 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 21:09:04.188 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.846 mm, average velocity = 2.191 mm/sec
17-03-17 21:09:05.138 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:05.138 -07 000000431 INF: FPGA: Recv YRDPOS 143078
17-03-17 21:09:05.148 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:05.148 -07 000000429 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:05.168 -07 000000429 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:09:05.168 -07 000000429 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:09:05.168 -07 000000429 INF: Y Motor: Moved to 69.8623 after 1424 ms (table move)
17-03-17 21:09:05.168 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169119 mm (DAC = 36944)
17-03-17 21:09:05.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.168 -07 000000459 INF: FPGA: Recv ZSGSRD 35609
17-03-17 21:09:05.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:09:05.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.178 -07 000000459 INF: FPGA: Recv ZSGSRD 35618
17-03-17 21:09:05.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.188 -07 000000433 INF: FPGA: Recv ZSGSRD 35619
17-03-17 21:09:05.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.198 -07 000000433 INF: FPGA: Recv ZSGSRD 35623
17-03-17 21:09:05.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.208 -07 000000433 INF: FPGA: Recv ZSGSRD 35612
17-03-17 21:09:05.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.218 -07 000000541 INF: FPGA: Recv ZSGSRD 35618
17-03-17 21:09:05.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.228 -07 000000541 INF: FPGA: Recv ZSGSRD 35619
17-03-17 21:09:05.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.238 -07 000000433 INF: FPGA: Recv ZSGSRD 35609
17-03-17 21:09:05.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.248 -07 000000541 INF: FPGA: Recv ZSGSRD 35611
17-03-17 21:09:05.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.258 -07 000000541 INF: FPGA: Recv ZSGSRD 35613
17-03-17 21:09:05.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:05.268 -07 000000433 INF: FPGA: Recv ZPIEZORD 31693
17-03-17 21:09:05.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.278 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -8.7 V.
17-03-17 21:09:05.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35615 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35616 (-168.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35609 (-168.2 uncal um), Max = 35623 (-168.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:09:05.278 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35615, posNoise = 8, negNoise = 6
17-03-17 21:09:05.278 -07 000000610 INF: Z Motor: After move to -0.169119, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:05.278 -07 000000610 INF: Z Motor: Settle wait time = 1426 ms, measure time = 103 ms (allowed 150 ms), total time = 1529 ms
17-03-17 21:09:05.278 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:09:05.328 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 21:09:05.328 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:09:05.328 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.169121667439951. ----------
17-03-17 21:09:05.328 -07 000000610 INF: Cycle	47	Tile	13	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:09:05.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36767, sync = True, waitForSettling = True)
17-03-17 21:09:05.328 -07 000000610 INF: Z Motor: Moving to -0.168309 mm, started at -0.169122 mm, distance = 0.81 um
17-03-17 21:09:05.328 -07 000000610 INF: FPGA: Xmit ZDACW 36767\n [Z Motor]
17-03-17 21:09:05.328 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:09:05.338 -07 000000610 INF: FPGA: 'ZDACW 36767' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:09:05.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:05.338 -07 000000626 INF: FPGA: Recv ZDACR 36767
17-03-17 21:09:05.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:09:05.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.498 -07 000000382 INF: FPGA: Recv ZSGSRD 35493
17-03-17 21:09:05.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:05.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.508 -07 000000433 INF: FPGA: Recv ZSGSRD 35496
17-03-17 21:09:05.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.518 -07 000000382 INF: FPGA: Recv ZSGSRD 35491
17-03-17 21:09:05.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.528 -07 000000433 INF: FPGA: Recv ZSGSRD 35490
17-03-17 21:09:05.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.538 -07 000000476 INF: FPGA: Recv ZSGSRD 35490
17-03-17 21:09:05.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.548 -07 000000433 INF: FPGA: Recv ZSGSRD 35487
17-03-17 21:09:05.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.558 -07 000000429 INF: FPGA: Recv ZSGSRD 35491
17-03-17 21:09:05.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.568 -07 000000476 INF: FPGA: Recv ZSGSRD 35483
17-03-17 21:09:05.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.578 -07 000000382 INF: FPGA: Recv ZSGSRD 35492
17-03-17 21:09:05.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:05.588 -07 000000576 INF: FPGA: Recv ZSGSRD 35494
17-03-17 21:09:05.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:05.598 -07 000000476 INF: FPGA: Recv ZPIEZORD 31499
17-03-17 21:09:05.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:05.608 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.610 V. Piezo Error = -8.8 V.
17-03-17 21:09:05.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35491 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35491 (-167.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35483 (-167.4 uncal um), Max = 35496 (-167.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:09:05.608 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35491, posNoise = 5, negNoise = 8
17-03-17 21:09:05.608 -07 000000610 INF: Z Motor: After move to -0.168309, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:05.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:09:05.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:05.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:05.608 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:05.608 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:05.608 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:09:05.608 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:05.608 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:09:05.608 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:09:05.608 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:09:05.608 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:09:05.608 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:09:05.608 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:09:05.618 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:09:05.618 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:09:05.618 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:09:05.618 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:09:05.628 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:09:05.628 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:09:05.628 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:09:05.628 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:09:05.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 36944 150\n [Camera]
17-03-17 21:09:05.838 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 21:09:06.198 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.986717,
17-03-17 21:09:06.258 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:09:06.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:09:06.258 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:06.258 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:09:06.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:09:06.258 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:06.268 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:06.268 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 21:09:06.268 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:06.268 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 21:09:06.448 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36944 811
17-03-17 21:09:06.598 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:09:06.638 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 21:09:06.638 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:09:06.638 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:06.638 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:09:06.638 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 21:09:06.638 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:06.648 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:09:06.648 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:09:06.648 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:09:06.648 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:09:06.808 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:09:06.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:09:06.808 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:06.808 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:09:06.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:09:06.808 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:06.808 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:06.808 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 21:09:06.818 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:06.818 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 21:09:06.848 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:09:06.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:09:06.998 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:09:06.998 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:09:06.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 36944 150' command took 2 ms to send, 1355 ms to get response, and 1365 ms overall
17-03-17 21:09:06.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:09:06.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.168325065134373. ------
17-03-17 21:09:07.008 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17463 mm
17-03-17 21:09:07.008 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:09:07.008 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:07.008 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38148, sync = True, waitForSettling = False)
17-03-17 21:09:07.008 -07 000000626 INF: Z Motor: Moving to -0.174630 mm, started at -0.168325 mm, distance = -6.31 um
17-03-17 21:09:07.008 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:07.008 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:09:07.008 -07 000000627 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-17 21:09:07.018 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:07.018 -07 000000626 INF: FPGA: Xmit ZDACW 38148\n [Z Motor]
17-03-17 21:09:07.018 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:09:07.028 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:07.028 -07 000000626 INF: FPGA: 'ZDACW 38148' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:09:07.028 -07 000000476 INF: FPGA: Recv YRDPOS 143078
17-03-17 21:09:07.038 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:09:07.038 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:09:07.038 -07 000000627 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:07.038 -07 000000627 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:09:07.038 -07 000000627 INF: Y Motor: Moving 1344 steps-21
17-03-17 21:09:07.048 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:07.048 -07 000000012 INF: FPGA: Recv ZDACR 38148
17-03-17 21:09:07.058 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:09:07.058 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:09:07.058 -07 000000626 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:09:07.188 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:09:07.188 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:09:07.188 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:09:07.188 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:07.188 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:09:07.188 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:07.198 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:09:07.198 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:09:07.198 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:09:07.208 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:09:07.238 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:09:07.238 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:09:07.428 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 21:09:07.428 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 21:09:07.468 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:07.478 -07 000000626 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:09:07.478 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:09:07.478 -07 000000627 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:07.478 -07 000000627 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:09:07.478 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.111 mm/sec
17-03-17 21:09:08.428 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:08.428 -07 000000438 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:09:08.438 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:08.438 -07 000000627 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:08.458 -07 000000627 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:09:08.458 -07 000000627 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:09:08.458 -07 000000627 INF: Y Motor: Moved to 70.6880 after 1448 ms (table move)
17-03-17 21:09:08.458 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174630 mm (DAC = 38148)
17-03-17 21:09:08.458 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:08.468 -07 000000431 INF: FPGA: Recv ZSGSRD 36480
17-03-17 21:09:08.468 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 21:09:08.468 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:08.468 -07 000000438 INF: FPGA: Recv ZSGSRD 36478
17-03-17 21:09:08.478 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:09:08.478 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:08.478 -07 000000431 INF: FPGA: Recv ZSGSRD 36475
17-03-17 21:09:08.488 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:08.488 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:08.488 -07 000000627 INF: FPGA: Recv ZSGSRD 36477
17-03-17 21:09:08.498 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:08.498 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:08.498 -07 000000618 INF: FPGA: Recv ZSGSRD 36479
17-03-17 21:09:08.508 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:08.508 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:08.508 -07 000000576 INF: FPGA: Recv ZSGSRD 36479
17-03-17 21:09:08.518 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:08.518 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:08.518 -07 000000618 INF: FPGA: Recv ZSGSRD 36464
17-03-17 21:09:08.528 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:08.528 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:08.528 -07 000000576 INF: FPGA: Recv ZSGSRD 36473
17-03-17 21:09:08.538 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:08.538 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:08.538 -07 000000569 INF: FPGA: Recv ZSGSRD 36475
17-03-17 21:09:08.548 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:08.548 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:08.548 -07 000000431 INF: FPGA: Recv ZSGSRD 36473
17-03-17 21:09:08.558 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:08.558 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:08.558 -07 000000569 INF: FPGA: Recv ZPIEZORD 32819
17-03-17 21:09:08.568 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:08.568 -07 000000415 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.821 V. Piezo Error = -8.1 V.
17-03-17 21:09:08.568 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36475 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36476 (-173.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36464 (-173.7 uncal um), Max = 36480 (-173.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 21:09:08.568 -07 000000415 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36475, posNoise = 5, negNoise = 11
17-03-17 21:09:08.568 -07 000000415 INF: Z Motor: After move to -0.174630, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:08.568 -07 000000415 INF: Z Motor: Settle wait time = 1452 ms, measure time = 105 ms (allowed 150 ms), total time = 1557 ms
17-03-17 21:09:08.568 -07 000000415 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:09:08.618 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 21:09:08.618 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:09:08.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:08.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:08.618 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:08.618 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:08.618 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:09:08.618 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:08.618 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:09:08.618 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:09:08.618 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:09:08.628 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:09:08.638 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:09:08.638 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:09:08.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:09:08.688 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:09:08.888 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:09:08.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:09:08.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:09:08.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 21:09:08.928 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:09:08.928 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 21:09:08.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 21:09:09.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:09:09.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:09.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:09:09.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:09:09.028 -07 000000415 INF: Autofocus start
17-03-17 21:09:09.028 -07 000000415 INF: MeasureProfile start
17-03-17 21:09:09.028 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:09.038 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:09.038 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:09:09.038 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:09:09.038 -07 000000415 INF: MeasureProfile done
17-03-17 21:09:09.038 -07 000000415 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:09:09.038 -07 000000415 INF: Autofocus finished
17-03-17 21:09:09.238 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:09:09.238 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:09:09.238 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174646489881866. ----------
17-03-17 21:09:09.238 -07 000000610 INF: Cycle	47	Tile	14	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:09:09.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36681, sync = True, waitForSettling = True)
17-03-17 21:09:09.248 -07 000000610 INF: Z Motor: Moving to -0.167915 mm, started at -0.174646 mm, distance = 6.73 um
17-03-17 21:09:09.248 -07 000000610 INF: FPGA: Xmit ZDACW 36681\n [Z Motor]
17-03-17 21:09:09.248 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:09:09.258 -07 000000610 INF: FPGA: 'ZDACW 36681' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:09.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:09.258 -07 000000627 INF: FPGA: Recv ZDACR 36681
17-03-17 21:09:09.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:09.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:09:09.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:09.418 -07 000000459 INF: FPGA: Recv ZSGSRD 35427
17-03-17 21:09:09.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:09.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:09.428 -07 000000431 INF: FPGA: Recv ZSGSRD 35428
17-03-17 21:09:09.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:09.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:09.438 -07 000000012 INF: FPGA: Recv ZSGSRD 35431
17-03-17 21:09:09.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:09.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:09.448 -07 000000438 INF: FPGA: Recv ZSGSRD 35430
17-03-17 21:09:09.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:09.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:09.458 -07 000000569 INF: FPGA: Recv ZSGSRD 35431
17-03-17 21:09:09.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:09.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:09.468 -07 000000431 INF: FPGA: Recv ZSGSRD 35426
17-03-17 21:09:09.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:09.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:09.478 -07 000000438 INF: FPGA: Recv ZSGSRD 35428
17-03-17 21:09:09.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:09.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:09.488 -07 000000431 INF: FPGA: Recv ZSGSRD 35431
17-03-17 21:09:09.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:09.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:09.498 -07 000000012 INF: FPGA: Recv ZSGSRD 35427
17-03-17 21:09:09.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:09.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:09.508 -07 000000431 INF: FPGA: Recv ZSGSRD 35429
17-03-17 21:09:09.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:09.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:09.518 -07 000000012 INF: FPGA: Recv ZPIEZORD 31404
17-03-17 21:09:09.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:09.528 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.597 V. Piezo Error = -8.9 V.
17-03-17 21:09:09.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35429 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35428 (-167.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35426 (-167.0 uncal um), Max = 35431 (-167.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:09:09.528 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35429, posNoise = 2, negNoise = 3
17-03-17 21:09:09.528 -07 000000610 INF: Z Motor: After move to -0.167915, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:09.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:09:09.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:09.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:09.528 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:09.528 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:09.528 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:09:09.528 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:09.528 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:09:09.528 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:09:09.528 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:09:09.528 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:09:09.528 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:09:09.528 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:09:09.528 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:09:09.538 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:09:09.538 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:09:09.538 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:09:09.548 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:09:09.548 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:09:09.548 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:09:09.548 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:09:09.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 36858 150\n [Camera]
17-03-17 21:09:09.748 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:09:10.178 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:09:10.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:09:10.178 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:10.178 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:10.178 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1054871600, 0x0, 391868352) start.
17-03-17 21:09:10.178 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:09:10.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:09:10.178 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:10.188 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:10.188 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1090293864, 0x0, 418435064) start.
17-03-17 21:09:10.368 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36858 811
17-03-17 21:09:10.518 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:09:10.558 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1090293864, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:09:10.558 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:09:10.558 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:10.558 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1054871600, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:09:10.558 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:09:10.558 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:10.558 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:10.558 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:10.568 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:09:10.568 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:09:10.728 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:09:10.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:09:10.728 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:10.728 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:10.728 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1125716128, 0x0, 391868352) start.
17-03-17 21:09:10.728 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:09:10.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:09:10.728 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:10.728 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:10.728 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:09:10.918 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:09:10.918 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:09:10.918 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 36858 150' command took 2 ms to send, 1356 ms to get response, and 1366 ms overall
17-03-17 21:09:11.038 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.168322
17-03-17 21:09:11.038 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16832 mm
17-03-17 21:09:11.038 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:09:11.038 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:09:11.038 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 36770, sync = True, waitForSettling = False)
17-03-17 21:09:11.038 -07 000000569 INF: Z Motor: Moving to -0.168322 mm, started at -0.167927 mm, distance = -0.40 um
17-03-17 21:09:11.038 -07 000000569 INF: FPGA: Xmit ZDACW 36770\n [Z Motor]
17-03-17 21:09:11.038 -07 000000431 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 21:09:11.048 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:09:11.048 -07 000000569 INF: FPGA: 'ZDACW 36770' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:09:11.048 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:11.048 -07 000000012 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:09:11.058 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:09:11.058 -07 000000431 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:11.058 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:11.058 -07 000000012 INF: FPGA: Recv ZDACR 36770
17-03-17 21:09:11.058 -07 000000431 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:09:11.058 -07 000000431 INF: Y Motor: Moving 1351 steps-30
17-03-17 21:09:11.068 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:09:11.068 -07 000000569 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 21:09:11.068 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:09:11.118 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:09:11.118 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:09:11.118 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:11.118 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1125716128, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 21:09:11.118 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:09:11.118 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:11.118 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:09:11.118 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:09:11.128 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:09:11.128 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:09:11.448 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:09:11.448 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 385 ms overall
17-03-17 21:09:11.478 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:11.488 -07 000000541 INF: FPGA: Recv YRDPOS 146469
17-03-17 21:09:11.488 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:09:11.488 -07 000000431 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:11.488 -07 000000431 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:09:11.488 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.845 mm, average velocity = 2.182 mm/sec
17-03-17 21:09:11.558 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.981281,
17-03-17 21:09:11.848 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:09:11.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:09:12.438 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:12.438 -07 000000541 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:09:12.448 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.448 -07 000000431 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:12.468 -07 000000431 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:09:12.468 -07 000000431 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:09:12.468 -07 000000431 INF: Y Motor: Moved to 71.5186 after 1425 ms (table move)
17-03-17 21:09:12.468 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168322 mm (DAC = 36770)
17-03-17 21:09:12.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.468 -07 000000569 INF: FPGA: Recv ZSGSRD 35495
17-03-17 21:09:12.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:09:12.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.478 -07 000000541 INF: FPGA: Recv ZSGSRD 35491
17-03-17 21:09:12.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.488 -07 000000501 INF: FPGA: Recv ZSGSRD 35500
17-03-17 21:09:12.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.498 -07 000000012 INF: FPGA: Recv ZSGSRD 35497
17-03-17 21:09:12.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.508 -07 000000541 INF: FPGA: Recv ZSGSRD 35493
17-03-17 21:09:12.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.518 -07 000000438 INF: FPGA: Recv ZSGSRD 35489
17-03-17 21:09:12.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.528 -07 000000541 INF: FPGA: Recv ZSGSRD 35486
17-03-17 21:09:12.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.538 -07 000000501 INF: FPGA: Recv ZSGSRD 35493
17-03-17 21:09:12.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.548 -07 000000438 INF: FPGA: Recv ZSGSRD 35494
17-03-17 21:09:12.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.558 -07 000000431 INF: FPGA: Recv ZSGSRD 35496
17-03-17 21:09:12.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:12.568 -07 000000459 INF: FPGA: Recv ZPIEZORD 31500
17-03-17 21:09:12.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.578 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.611 V. Piezo Error = -8.8 V.
17-03-17 21:09:12.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35493 (-167.5 uncal um), Error = 0.9 uncal um, Median = 35494 (-167.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35486 (-167.4 uncal um), Max = 35500 (-167.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:09:12.578 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35493, posNoise = 7, negNoise = 7
17-03-17 21:09:12.578 -07 000000610 INF: Z Motor: After move to -0.168322, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:12.578 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 106 ms (allowed 150 ms), total time = 1533 ms
17-03-17 21:09:12.578 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 21:09:12.628 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 21:09:12.628 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:09:12.628 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.168337913558657. ----------
17-03-17 21:09:12.628 -07 000000610 INF: Cycle	47	Tile	15	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:09:12.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36593, sync = True, waitForSettling = True)
17-03-17 21:09:12.628 -07 000000610 INF: Z Motor: Moving to -0.167512 mm, started at -0.168338 mm, distance = 0.83 um
17-03-17 21:09:12.628 -07 000000610 INF: FPGA: Xmit ZDACW 36593\n [Z Motor]
17-03-17 21:09:12.638 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:09:12.638 -07 000000610 INF: FPGA: 'ZDACW 36593' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:09:12.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:12.638 -07 000000541 INF: FPGA: Recv ZDACR 36593
17-03-17 21:09:12.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:09:12.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.798 -07 000000012 INF: FPGA: Recv ZSGSRD 35362
17-03-17 21:09:12.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:12.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.808 -07 000000501 INF: FPGA: Recv ZSGSRD 35365
17-03-17 21:09:12.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.818 -07 000000459 INF: FPGA: Recv ZSGSRD 35366
17-03-17 21:09:12.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.828 -07 000000541 INF: FPGA: Recv ZSGSRD 35367
17-03-17 21:09:12.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.838 -07 000000459 INF: FPGA: Recv ZSGSRD 35362
17-03-17 21:09:12.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.848 -07 000000438 INF: FPGA: Recv ZSGSRD 35367
17-03-17 21:09:12.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.858 -07 000000541 INF: FPGA: Recv ZSGSRD 35370
17-03-17 21:09:12.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.868 -07 000000459 INF: FPGA: Recv ZSGSRD 35359
17-03-17 21:09:12.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.878 -07 000000541 INF: FPGA: Recv ZSGSRD 35366
17-03-17 21:09:12.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:12.888 -07 000000459 INF: FPGA: Recv ZSGSRD 35367
17-03-17 21:09:12.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:12.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:12.898 -07 000000541 INF: FPGA: Recv ZPIEZORD 31363
17-03-17 21:09:12.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:12.908 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.584 V. Piezo Error = -8.8 V.
17-03-17 21:09:12.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35365 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35366 (-166.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35359 (-166.6 uncal um), Max = 35370 (-166.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:09:12.908 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35365, posNoise = 5, negNoise = 6
17-03-17 21:09:12.908 -07 000000610 INF: Z Motor: After move to -0.167512, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:12.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:09:12.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:12.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:12.908 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:12.908 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:12.908 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:09:12.908 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:12.908 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:09:12.908 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:09:12.908 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:09:12.908 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:09:12.908 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:09:12.908 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:09:12.918 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:09:12.918 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:09:12.918 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:09:12.918 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:09:12.928 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:09:12.928 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:09:12.928 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:09:12.928 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:09:12.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 36770 150\n [Camera]
17-03-17 21:09:13.138 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 21:09:13.558 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:09:13.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:09:13.558 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:13.558 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:09:13.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:09:13.568 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:13.568 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:13.568 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:09:13.568 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:13.568 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:09:13.748 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36770 811
17-03-17 21:09:13.898 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:09:13.938 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 21:09:13.938 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 21:09:13.938 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 21:09:13.938 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:13.938 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 21:09:13.938 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:13.948 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:09:13.948 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:09:13.948 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:09:13.948 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:09:14.108 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:09:14.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:09:14.108 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:14.108 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:09:14.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:09:14.108 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:14.108 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:14.108 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:09:14.118 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:14.118 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:09:14.298 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-17 21:09:14.298 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:09:14.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 36770 150' command took 2 ms to send, 1355 ms to get response, and 1365 ms overall
17-03-17 21:09:14.298 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167733
17-03-17 21:09:14.298 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16773 mm
17-03-17 21:09:14.298 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:09:14.308 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 36641, sync = True, waitForSettling = False)
17-03-17 21:09:14.308 -07 000000012 INF: Z Motor: Moving to -0.167732 mm, started at -0.167516 mm, distance = -0.22 um
17-03-17 21:09:14.308 -07 000000012 INF: FPGA: Xmit ZDACW 36641\n [Z Motor]
17-03-17 21:09:14.308 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:09:14.308 -07 000000541 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 21:09:14.308 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:09:14.318 -07 000000012 INF: FPGA: 'ZDACW 36641' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:09:14.318 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:14.318 -07 000000569 INF: FPGA: Recv ZDACR 36641
17-03-17 21:09:14.328 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:14.328 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:14.328 -07 000000012 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet))
17-03-17 21:09:14.328 -07 000000012 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:09:14.338 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:09:14.338 -07 000000541 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:14.338 -07 000000541 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:09:14.338 -07 000000541 INF: Y Motor: Moving 1350 steps-30
17-03-17 21:09:14.338 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:09:14.498 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:09:14.498 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:09:14.498 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:14.498 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:09:14.498 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:09:14.498 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:14.498 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:14.498 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:09:14.498 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:14.508 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:09:14.708 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 21:09:14.708 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-17 21:09:14.748 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:14.758 -07 000000438 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:09:14.758 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:09:14.758 -07 000000541 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:14.758 -07 000000541 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:09:14.758 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.233 mm/sec
17-03-17 21:09:15.708 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:15.708 -07 000000459 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:09:15.718 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:15.718 -07 000000541 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:15.738 -07 000000541 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:09:15.738 -07 000000541 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:09:15.738 -07 000000541 INF: Y Motor: Moved to 72.3491 after 1430 ms (table move)
17-03-17 21:09:15.738 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167732 mm (DAC = 36641)
17-03-17 21:09:15.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:15.738 -07 000000459 INF: FPGA: Recv ZSGSRD 35399
17-03-17 21:09:15.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:09:15.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:15.748 -07 000000438 INF: FPGA: Recv ZSGSRD 35400
17-03-17 21:09:15.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:15.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:15.758 -07 000000459 INF: FPGA: Recv ZSGSRD 35394
17-03-17 21:09:15.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:15.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:15.768 -07 000000438 INF: FPGA: Recv ZSGSRD 35398
17-03-17 21:09:15.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:15.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:15.778 -07 000000459 INF: FPGA: Recv ZSGSRD 35400
17-03-17 21:09:15.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:15.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:15.788 -07 000000438 INF: FPGA: Recv ZSGSRD 35402
17-03-17 21:09:15.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:15.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:15.798 -07 000000501 INF: FPGA: Recv ZSGSRD 35400
17-03-17 21:09:15.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:15.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:15.808 -07 000000438 INF: FPGA: Recv ZSGSRD 35401
17-03-17 21:09:15.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:15.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:15.818 -07 000000012 INF: FPGA: Recv ZSGSRD 35406
17-03-17 21:09:15.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:15.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:15.828 -07 000000541 INF: FPGA: Recv ZSGSRD 35400
17-03-17 21:09:15.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:15.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:15.838 -07 000000569 INF: FPGA: Recv ZPIEZORD 31419
17-03-17 21:09:15.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:15.848 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.591 V. Piezo Error = -8.8 V.
17-03-17 21:09:15.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35400 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35400 (-166.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35394 (-166.8 uncal um), Max = 35406 (-166.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:09:15.848 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35400, posNoise = 6, negNoise = 6
17-03-17 21:09:15.848 -07 000000610 INF: Z Motor: After move to -0.167732, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:15.848 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 104 ms (allowed 150 ms), total time = 1538 ms
17-03-17 21:09:15.848 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:09:15.898 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 21:09:15.898 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:09:15.898 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.167740461829473. ----------
17-03-17 21:09:15.898 -07 000000610 INF: Cycle	47	Tile	16	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:09:15.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36464, sync = True, waitForSettling = True)
17-03-17 21:09:15.898 -07 000000610 INF: Z Motor: Moving to -0.166921 mm, started at -0.167740 mm, distance = 0.82 um
17-03-17 21:09:15.898 -07 000000610 INF: FPGA: Xmit ZDACW 36464\n [Z Motor]
17-03-17 21:09:15.898 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:09:15.908 -07 000000610 INF: FPGA: 'ZDACW 36464' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:09:15.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:15.908 -07 000000438 INF: FPGA: Recv ZDACR 36464
17-03-17 21:09:15.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:15.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:09:16.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:16.068 -07 000000012 INF: FPGA: Recv ZSGSRD 35268
17-03-17 21:09:16.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:16.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:16.078 -07 000000569 INF: FPGA: Recv ZSGSRD 35278
17-03-17 21:09:16.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:16.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:16.088 -07 000000459 INF: FPGA: Recv ZSGSRD 35270
17-03-17 21:09:16.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:16.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:16.098 -07 000000438 INF: FPGA: Recv ZSGSRD 35274
17-03-17 21:09:16.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:16.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:16.108 -07 000000459 INF: FPGA: Recv ZSGSRD 35273
17-03-17 21:09:16.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:16.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:16.118 -07 000000012 INF: FPGA: Recv ZSGSRD 35271
17-03-17 21:09:16.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:16.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:16.128 -07 000000569 INF: FPGA: Recv ZSGSRD 35275
17-03-17 21:09:16.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:16.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:16.138 -07 000000459 INF: FPGA: Recv ZSGSRD 35276
17-03-17 21:09:16.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:16.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:16.148 -07 000000438 INF: FPGA: Recv ZSGSRD 35276
17-03-17 21:09:16.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:16.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:16.158 -07 000000541 INF: FPGA: Recv ZSGSRD 35273
17-03-17 21:09:16.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:16.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:16.168 -07 000000459 INF: FPGA: Recv ZPIEZORD 31231
17-03-17 21:09:16.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:16.178 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.564 V. Piezo Error = -8.9 V.
17-03-17 21:09:16.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35273 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35274 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35268 (-166.0 uncal um), Max = 35278 (-166.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:09:16.178 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35273, posNoise = 5, negNoise = 5
17-03-17 21:09:16.178 -07 000000610 INF: Z Motor: After move to -0.166921, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:16.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 21:09:16.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:16.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:16.178 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:16.178 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:16.178 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:09:16.178 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:09:16.178 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:09:16.178 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:16.178 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:09:16.178 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:09:16.178 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:09:16.178 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:09:16.188 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:09:16.188 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:09:16.188 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:09:16.188 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:09:16.198 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:09:16.198 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:09:16.198 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:09:16.198 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:09:16.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 36641 150\n [Camera]
17-03-17 21:09:16.408 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:09:16.828 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:09:16.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:09:16.828 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:16.838 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:09:16.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:09:16.838 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:16.838 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:09:16.838 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:16.958 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:09:16.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:09:16.958 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:16.958 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:09:16.968 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.975845,
17-03-17 21:09:17.018 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36641 811
17-03-17 21:09:17.178 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:09:17.218 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:09:17.218 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:09:17.218 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:17.228 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:17.228 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:09:17.328 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 365 ms.
17-03-17 21:09:17.328 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 365 ms.
17-03-17 21:09:17.328 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:17.328 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:09:17.338 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-17 21:09:17.378 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:09:17.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:09:17.378 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:17.378 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:09:17.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:09:17.378 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:17.378 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:17.388 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:09:17.388 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:17.388 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:09:17.568 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:09:17.568 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:09:17.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 36641 150' command took 2 ms to send, 1358 ms to get response, and 1368 ms overall
17-03-17 21:09:17.578 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167414
17-03-17 21:09:17.578 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16741 mm
17-03-17 21:09:17.578 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:09:17.578 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 36572, sync = True, waitForSettling = False)
17-03-17 21:09:17.578 -07 000000626 INF: Z Motor: Moving to -0.167416 mm, started at -0.166925 mm, distance = -0.49 um
17-03-17 21:09:17.578 -07 000000626 INF: FPGA: Xmit ZDACW 36572\n [Z Motor]
17-03-17 21:09:17.578 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:09:17.578 -07 000000627 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 21:09:17.578 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:09:17.588 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:17.588 -07 000000626 INF: FPGA: 'ZDACW 36572' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:09:17.588 -07 000000459 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:09:17.598 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:17.598 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:09:17.598 -07 000000627 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:17.598 -07 000000627 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:09:17.598 -07 000000627 INF: Y Motor: Moving 1350 steps-28
17-03-17 21:09:17.598 -07 000000415 INF: FPGA: Recv ZDACR 36572
17-03-17 21:09:17.608 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:09:17.608 -07 000000626 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 21:09:17.608 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:09:17.758 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:09:17.758 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:09:17.758 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:17.758 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:09:17.758 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:09:17.758 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:17.768 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:17.768 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:09:17.768 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:17.768 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:09:17.978 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 21:09:17.978 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:09:18.018 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:18.028 -07 000000626 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:09:18.028 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:09:18.028 -07 000000627 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:18.028 -07 000000627 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 21:09:18.028 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.843 mm, average velocity = 2.180 mm/sec
17-03-17 21:09:18.978 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:18.978 -07 000000626 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:09:18.988 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:18.988 -07 000000627 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:19.008 -07 000000627 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:09:19.008 -07 000000627 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:09:19.008 -07 000000627 INF: Y Motor: Moved to 73.1758 after 1426 ms (table move)
17-03-17 21:09:19.008 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167416 mm (DAC = 36572)
17-03-17 21:09:19.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.008 -07 000000438 INF: FPGA: Recv ZSGSRD 35349
17-03-17 21:09:19.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:09:19.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.018 -07 000000618 INF: FPGA: Recv ZSGSRD 35347
17-03-17 21:09:19.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.028 -07 000000438 INF: FPGA: Recv ZSGSRD 35343
17-03-17 21:09:19.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.038 -07 000000626 INF: FPGA: Recv ZSGSRD 35357
17-03-17 21:09:19.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.048 -07 000000627 INF: FPGA: Recv ZSGSRD 35358
17-03-17 21:09:19.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.058 -07 000000429 INF: FPGA: Recv ZSGSRD 35348
17-03-17 21:09:19.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.068 -07 000000501 INF: FPGA: Recv ZSGSRD 35352
17-03-17 21:09:19.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.078 -07 000000618 INF: FPGA: Recv ZSGSRD 35350
17-03-17 21:09:19.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.088 -07 000000501 INF: FPGA: Recv ZSGSRD 35351
17-03-17 21:09:19.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.098 -07 000000438 INF: FPGA: Recv ZSGSRD 35346
17-03-17 21:09:19.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:19.108 -07 000000429 INF: FPGA: Recv ZPIEZORD 31347
17-03-17 21:09:19.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.118 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.581 V. Piezo Error = -8.8 V.
17-03-17 21:09:19.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35350 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35350 (-166.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35343 (-166.5 uncal um), Max = 35358 (-166.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:09:19.118 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35350, posNoise = 8, negNoise = 7
17-03-17 21:09:19.118 -07 000000610 INF: Z Motor: After move to -0.167416, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:19.118 -07 000000610 INF: Z Motor: Settle wait time = 1429 ms, measure time = 105 ms (allowed 150 ms), total time = 1534 ms
17-03-17 21:09:19.118 -07 000000610 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:09:19.168 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 21:09:19.168 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:09:19.168 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.167419251222385. ----------
17-03-17 21:09:19.168 -07 000000610 INF: Cycle	47	Tile	17	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:09:19.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36395, sync = True, waitForSettling = True)
17-03-17 21:09:19.168 -07 000000610 INF: Z Motor: Moving to -0.166606 mm, started at -0.167419 mm, distance = 0.81 um
17-03-17 21:09:19.168 -07 000000610 INF: FPGA: Xmit ZDACW 36395\n [Z Motor]
17-03-17 21:09:19.168 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:09:19.178 -07 000000610 INF: FPGA: 'ZDACW 36395' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:09:19.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:19.178 -07 000000626 INF: FPGA: Recv ZDACR 36395
17-03-17 21:09:19.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:09:19.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.338 -07 000000438 INF: FPGA: Recv ZSGSRD 35219
17-03-17 21:09:19.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:19.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.348 -07 000000627 INF: FPGA: Recv ZSGSRD 35225
17-03-17 21:09:19.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.358 -07 000000438 INF: FPGA: Recv ZSGSRD 35228
17-03-17 21:09:19.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.368 -07 000000626 INF: FPGA: Recv ZSGSRD 35228
17-03-17 21:09:19.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.378 -07 000000618 INF: FPGA: Recv ZSGSRD 35229
17-03-17 21:09:19.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.388 -07 000000626 INF: FPGA: Recv ZSGSRD 35216
17-03-17 21:09:19.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.398 -07 000000438 INF: FPGA: Recv ZSGSRD 35229
17-03-17 21:09:19.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.408 -07 000000429 INF: FPGA: Recv ZSGSRD 35229
17-03-17 21:09:19.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.418 -07 000000438 INF: FPGA: Recv ZSGSRD 35223
17-03-17 21:09:19.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:19.428 -07 000000618 INF: FPGA: Recv ZSGSRD 35227
17-03-17 21:09:19.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:19.438 -07 000000627 INF: FPGA: Recv ZPIEZORD 31172
17-03-17 21:09:19.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:19.448 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.554 V. Piezo Error = -8.9 V.
17-03-17 21:09:19.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35225 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35228 (-165.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35216 (-165.7 uncal um), Max = 35229 (-165.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:09:19.448 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35225, posNoise = 4, negNoise = 9
17-03-17 21:09:19.448 -07 000000610 INF: Z Motor: After move to -0.166606, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:19.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 21:09:19.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:19.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:19.448 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:19.448 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:09:19.448 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:19.448 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:19.448 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:09:19.448 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:09:19.448 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:09:19.448 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:09:19.448 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:09:19.448 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:09:19.458 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:09:19.458 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:09:19.458 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:09:19.458 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:09:19.468 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:09:19.468 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:09:19.468 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:09:19.468 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:09:19.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 36572 150\n [Camera]
17-03-17 21:09:19.678 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 21:09:20.098 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:09:20.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:09:20.098 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:20.098 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:09:20.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:09:20.098 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:20.108 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:20.108 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:09:20.108 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:20.108 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:09:20.288 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36572 811
17-03-17 21:09:20.438 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:09:20.488 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:09:20.488 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:09:20.488 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:20.488 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:09:20.488 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:09:20.488 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:20.488 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:20.488 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:20.488 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:09:20.498 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:09:20.648 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:09:20.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:09:20.648 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:20.648 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:09:20.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:09:20.648 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:20.768 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:20.768 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 21:09:20.768 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:20.768 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:09:20.838 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:09:20.838 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:09:20.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 36572 150' command took 2 ms to send, 1354 ms to get response, and 1366 ms overall
17-03-17 21:09:20.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:09:20.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166616224704665. ------
17-03-17 21:09:20.838 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:20.838 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17302 mm
17-03-17 21:09:20.838 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:09:20.848 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 37797, sync = True, waitForSettling = False)
17-03-17 21:09:20.848 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:09:20.848 -07 000000438 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 21:09:20.848 -07 000000429 INF: Z Motor: Moving to -0.173024 mm, started at -0.166616 mm, distance = -6.41 um
17-03-17 21:09:20.848 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:20.848 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 21:09:20.848 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:20.848 -07 000000382 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:09:20.858 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:09:20.858 -07 000000438 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:20.858 -07 000000438 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:09:20.858 -07 000000438 INF: Y Motor: Moving 1355 steps-34
17-03-17 21:09:20.858 -07 000000429 INF: FPGA: Xmit ZDACW 37797\n [Z Motor]
17-03-17 21:09:20.858 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:09:20.868 -07 000000429 INF: FPGA: 'ZDACW 37797' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:09:20.868 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:09:20.878 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:09:20.888 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:20.888 -07 000000627 INF: FPGA: Recv ZDACR 37797
17-03-17 21:09:20.898 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:09:20.898 -07 000000429 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:09:21.068 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:09:21.068 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 218 ms overall
17-03-17 21:09:21.148 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:09:21.148 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:09:21.148 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:21.148 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:09:21.148 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:09:21.148 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:21.148 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:09:21.148 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:09:21.148 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-17 21:09:21.158 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-17 21:09:21.248 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:09:21.248 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:09:21.278 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:21.288 -07 000000627 INF: FPGA: Recv YRDPOS 151567
17-03-17 21:09:21.288 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:09:21.288 -07 000000438 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:21.288 -07 000000438 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:09:21.288 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.847 mm, average velocity = 2.128 mm/sec
17-03-17 21:09:21.848 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:09:21.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:09:22.238 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:22.238 -07 000000626 INF: FPGA: Recv YRDPOS 151567
17-03-17 21:09:22.248 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:22.248 -07 000000438 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:22.258 -07 000000438 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:09:22.258 -07 000000438 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:09:22.258 -07 000000438 INF: Y Motor: Moved to 74.0073 after 1416 ms (table move)
17-03-17 21:09:22.268 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173024 mm (DAC = 37797)
17-03-17 21:09:22.268 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:22.268 -07 000000429 INF: FPGA: Recv ZSGSRD 36232
17-03-17 21:09:22.278 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:09:22.278 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:22.278 -07 000000429 INF: FPGA: Recv ZSGSRD 36225
17-03-17 21:09:22.288 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:22.288 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:22.288 -07 000000429 INF: FPGA: Recv ZSGSRD 36219
17-03-17 21:09:22.298 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:22.298 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:22.298 -07 000000429 INF: FPGA: Recv ZSGSRD 36221
17-03-17 21:09:22.308 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:22.308 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:22.308 -07 000000459 INF: FPGA: Recv ZSGSRD 36225
17-03-17 21:09:22.318 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:22.328 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:22.328 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.985358,
17-03-17 21:09:22.328 -07 000000433 INF: FPGA: Recv ZSGSRD 36227
17-03-17 21:09:22.338 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:09:22.348 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:22.348 -07 000000438 INF: FPGA: Recv ZSGSRD 36220
17-03-17 21:09:22.358 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:09:22.358 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:22.358 -07 000000627 INF: FPGA: Recv ZSGSRD 36230
17-03-17 21:09:22.368 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:22.388 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:22.388 -07 000000501 INF: FPGA: Recv ZSGSRD 36228
17-03-17 21:09:22.398 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:09:22.408 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:22.408 -07 000000382 INF: FPGA: Recv ZSGSRD 36221
17-03-17 21:09:22.418 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:09:22.418 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:22.418 -07 000000382 INF: FPGA: Recv ZPIEZORD 32535
17-03-17 21:09:22.428 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:22.428 -07 000000576 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.767 V. Piezo Error = -8.2 V.
17-03-17 21:09:22.428 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36225 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36225 (-172.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36219 (-172.1 uncal um), Max = 36232 (-172.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:09:22.428 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36225, posNoise = 7, negNoise = 6
17-03-17 21:09:22.428 -07 000000576 INF: Z Motor: After move to -0.173024, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:22.428 -07 000000576 INF: Z Motor: Settle wait time = 1419 ms, measure time = 158 ms (allowed 150 ms), total time = 1577 ms
17-03-17 21:09:22.428 -07 000000576 INF: Z Motor: Warning: Actual position measuring time = 158 ms, longer than max expected time of 150 ms
17-03-17 21:09:22.428 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-17 21:09:22.428 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:09:22.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:22.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:22.438 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:22.438 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:22.438 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:09:22.438 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:22.438 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:09:22.438 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:09:22.438 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:09:22.438 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:09:22.448 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:09:22.448 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:09:22.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:09:22.498 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:09:22.698 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:09:22.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:09:22.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:09:22.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610472208, 0x0, 559484976) start.
17-03-17 21:09:22.738 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:09:22.738 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 21:09:22.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 286 ms overall
17-03-17 21:09:22.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610472208, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:09:22.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:22.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:09:22.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:09:22.838 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:22.838 -07 000000429 INF: Autofocus start
17-03-17 21:09:22.838 -07 000000429 INF: MeasureProfile start
17-03-17 21:09:22.838 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:22.848 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:09:22.848 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:09:22.848 -07 000000429 INF: MeasureProfile done
17-03-17 21:09:22.848 -07 000000429 INF: X=112  Z correction [um]=0.5011052
17-03-17 21:09:22.848 -07 000000429 INF: Autofocus finished
17-03-17 21:09:23.048 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:09:23.048 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:09:23.048 -07 000000610 INF: Suspending Skipping AutoFocus for the next 6 cycles.
17-03-17 21:09:23.048 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.173040436846426. ----------
17-03-17 21:09:23.058 -07 000000610 INF: Cycle	47	Tile	18	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:09:23.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36419, sync = True, waitForSettling = True)
17-03-17 21:09:23.058 -07 000000610 INF: Z Motor: Moving to -0.166715 mm, started at -0.173040 mm, distance = 6.32 um
17-03-17 21:09:23.058 -07 000000610 INF: FPGA: Xmit ZDACW 36419\n [Z Motor]
17-03-17 21:09:23.058 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:09:23.068 -07 000000610 INF: FPGA: 'ZDACW 36419' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:09:23.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:23.068 -07 000000438 INF: FPGA: Recv ZDACR 36419
17-03-17 21:09:23.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:23.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:09:23.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:23.228 -07 000000618 INF: FPGA: Recv ZSGSRD 35239
17-03-17 21:09:23.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:23.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:23.238 -07 000000501 INF: FPGA: Recv ZSGSRD 35245
17-03-17 21:09:23.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:23.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:23.248 -07 000000012 INF: FPGA: Recv ZSGSRD 35242
17-03-17 21:09:23.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:23.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:23.258 -07 000000618 INF: FPGA: Recv ZSGSRD 35238
17-03-17 21:09:23.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:23.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:23.268 -07 000000433 INF: FPGA: Recv ZSGSRD 35244
17-03-17 21:09:23.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:23.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:23.278 -07 000000618 INF: FPGA: Recv ZSGSRD 35239
17-03-17 21:09:23.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:23.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:23.288 -07 000000433 INF: FPGA: Recv ZSGSRD 35244
17-03-17 21:09:23.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:23.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:23.298 -07 000000618 INF: FPGA: Recv ZSGSRD 35244
17-03-17 21:09:23.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:23.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:23.308 -07 000000429 INF: FPGA: Recv ZSGSRD 35240
17-03-17 21:09:23.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:23.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:23.318 -07 000000501 INF: FPGA: Recv ZSGSRD 35240
17-03-17 21:09:23.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:23.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:23.328 -07 000000433 INF: FPGA: Recv ZPIEZORD 31208
17-03-17 21:09:23.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:23.338 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -8.9 V.
17-03-17 21:09:23.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35242 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35241 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35238 (-165.8 uncal um), Max = 35245 (-165.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:09:23.338 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35242, posNoise = 3, negNoise = 4
17-03-17 21:09:23.338 -07 000000610 INF: Z Motor: After move to -0.166715, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:23.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:09:23.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:23.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:23.338 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:23.338 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:09:23.338 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:23.338 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:23.338 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:09:23.338 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:09:23.338 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:09:23.338 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:09:23.338 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:09:23.338 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:09:23.348 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:09:23.348 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:09:23.348 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:09:23.348 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:09:23.358 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:09:23.358 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 21:09:23.358 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:09:23.358 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 21:09:23.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 36596 150\n [Camera]
17-03-17 21:09:23.558 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:09:23.988 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:09:23.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:09:23.988 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:23.988 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:09:23.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:09:23.988 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:23.988 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:23.988 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:09:23.998 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:23.998 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:09:24.178 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36596 811
17-03-17 21:09:24.328 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:09:24.368 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:09:24.368 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:09:24.368 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:24.378 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:09:24.378 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:09:24.378 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:24.378 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:09:24.378 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:09:24.378 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:09:24.388 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:09:24.528 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:09:24.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:09:24.538 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:24.538 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:09:24.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:09:24.538 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:24.548 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:24.548 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:09:24.548 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:24.548 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:09:24.728 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-17 21:09:24.728 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:09:24.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 36596 150' command took 2 ms to send, 1361 ms to get response, and 1365 ms overall
17-03-17 21:09:24.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:09:24.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.166725436311075. ------
17-03-17 21:09:24.728 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:24.728 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17307 mm
17-03-17 21:09:24.728 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:09:24.728 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:09:24.728 -07 000000438 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-17 21:09:24.738 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 37806, sync = True, waitForSettling = False)
17-03-17 21:09:24.738 -07 000000429 INF: Z Motor: Moving to -0.173065 mm, started at -0.166725 mm, distance = -6.34 um
17-03-17 21:09:24.738 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:24.738 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:09:24.738 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:24.738 -07 000000476 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:09:24.748 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:24.748 -07 000000438 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:24.748 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:09:24.868 -07 000000429 INF: FPGA: Xmit ZDACW 37806\n [Z Motor]
17-03-17 21:09:24.868 -07 000000438 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:09:24.868 -07 000000438 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:09:24.868 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 21:09:24.878 -07 000000429 INF: FPGA: 'ZDACW 37806' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-17 21:09:24.878 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:09:24.888 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:24.888 -07 000000541 INF: FPGA: Recv ZDACR 37806
17-03-17 21:09:24.898 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:09:24.898 -07 000000429 INF: Z Motor: MoveAbsStepped took 159 ms (did NOT wait for settling yet))
17-03-17 21:09:24.918 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:09:24.918 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:09:24.918 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:24.928 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:09:24.928 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:09:24.928 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:24.928 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:24.928 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:24.928 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:09:24.938 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:09:24.948 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:09:24.948 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 78 ms to get response, and 211 ms overall
17-03-17 21:09:25.248 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 21:09:25.248 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 21:09:25.278 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:25.278 -07 000000433 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:09:25.288 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:09:25.288 -07 000000438 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:25.288 -07 000000438 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 21:09:25.288 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.201 mm/sec
17-03-17 21:09:26.238 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:26.238 -07 000000415 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:09:26.248 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:26.248 -07 000000438 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:26.258 -07 000000438 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:09:26.258 -07 000000438 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:09:26.258 -07 000000438 INF: Y Motor: Moved to 74.8315 after 1526 ms (table move)
17-03-17 21:09:26.258 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173065 mm (DAC = 37806)
17-03-17 21:09:26.258 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:26.268 -07 000000012 INF: FPGA: Recv ZSGSRD 36231
17-03-17 21:09:26.268 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:09:26.268 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:26.268 -07 000000012 INF: FPGA: Recv ZSGSRD 36242
17-03-17 21:09:26.278 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:09:26.278 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:26.278 -07 000000012 INF: FPGA: Recv ZSGSRD 36227
17-03-17 21:09:26.288 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:26.288 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:26.288 -07 000000415 INF: FPGA: Recv ZSGSRD 36228
17-03-17 21:09:26.298 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:26.298 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:26.298 -07 000000626 INF: FPGA: Recv ZSGSRD 36232
17-03-17 21:09:26.308 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:26.308 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:26.308 -07 000000476 INF: FPGA: Recv ZSGSRD 36229
17-03-17 21:09:26.318 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:26.318 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:26.318 -07 000000476 INF: FPGA: Recv ZSGSRD 36230
17-03-17 21:09:26.328 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:26.328 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:26.328 -07 000000476 INF: FPGA: Recv ZSGSRD 36235
17-03-17 21:09:26.338 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:26.338 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:26.338 -07 000000569 INF: FPGA: Recv ZSGSRD 36237
17-03-17 21:09:26.348 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:26.348 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:26.348 -07 000000569 INF: FPGA: Recv ZSGSRD 36225
17-03-17 21:09:26.358 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:26.358 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:26.358 -07 000000438 INF: FPGA: Recv ZPIEZORD 32531
17-03-17 21:09:26.368 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:26.368 -07 000000618 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.769 V. Piezo Error = -8.2 V.
17-03-17 21:09:26.368 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36232 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36230 (-172.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36225 (-172.2 uncal um), Max = 36242 (-172.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:09:26.368 -07 000000618 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36232, posNoise = 10, negNoise = 7
17-03-17 21:09:26.368 -07 000000618 INF: Z Motor: After move to -0.173065, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:26.368 -07 000000618 INF: Z Motor: Settle wait time = 1528 ms, measure time = 102 ms (allowed 150 ms), total time = 1630 ms
17-03-17 21:09:26.368 -07 000000618 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:09:26.418 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1683 ms
17-03-17 21:09:26.418 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:09:26.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:26.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:26.418 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:26.418 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:26.418 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:09:26.418 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:26.418 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:09:26.418 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:09:26.428 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:09:26.428 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:09:26.438 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:09:26.438 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:09:26.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:09:26.488 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:09:26.688 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:09:26.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:09:26.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:09:26.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:09:26.728 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:09:26.728 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:09:26.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:09:26.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:09:26.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:26.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:09:26.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:09:26.828 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:26.828 -07 000000438 INF: Autofocus start
17-03-17 21:09:26.828 -07 000000438 INF: MeasureProfile start
17-03-17 21:09:26.828 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:26.838 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:09:26.838 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:09:26.838 -07 000000438 INF: MeasureProfile done
17-03-17 21:09:26.838 -07 000000438 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:09:26.838 -07 000000438 INF: Autofocus finished
17-03-17 21:09:26.848 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:09:26.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:09:27.038 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:09:27.038 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 21:09:27.038 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.173085406331418. ----------
17-03-17 21:09:27.038 -07 000000610 INF: Cycle	47	Tile	19	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:09:27.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36339, sync = True, waitForSettling = True)
17-03-17 21:09:27.048 -07 000000610 INF: Z Motor: Moving to -0.166349 mm, started at -0.173085 mm, distance = 6.74 um
17-03-17 21:09:27.048 -07 000000610 INF: FPGA: Xmit ZDACW 36339\n [Z Motor]
17-03-17 21:09:27.048 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 21:09:27.058 -07 000000610 INF: FPGA: 'ZDACW 36339' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:09:27.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:27.058 -07 000000476 INF: FPGA: Recv ZDACR 36339
17-03-17 21:09:27.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:27.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:09:27.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:27.218 -07 000000012 INF: FPGA: Recv ZSGSRD 35183
17-03-17 21:09:27.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:27.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:27.228 -07 000000429 INF: FPGA: Recv ZSGSRD 35184
17-03-17 21:09:27.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:27.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:27.238 -07 000000415 INF: FPGA: Recv ZSGSRD 35190
17-03-17 21:09:27.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:27.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:27.248 -07 000000626 INF: FPGA: Recv ZSGSRD 35192
17-03-17 21:09:27.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:27.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:27.258 -07 000000618 INF: FPGA: Recv ZSGSRD 35194
17-03-17 21:09:27.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:27.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:27.268 -07 000000433 INF: FPGA: Recv ZSGSRD 35183
17-03-17 21:09:27.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:27.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:27.278 -07 000000541 INF: FPGA: Recv ZSGSRD 35190
17-03-17 21:09:27.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:27.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:27.288 -07 000000476 INF: FPGA: Recv ZSGSRD 35185
17-03-17 21:09:27.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:27.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:27.298 -07 000000012 INF: FPGA: Recv ZSGSRD 35185
17-03-17 21:09:27.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:27.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:27.308 -07 000000541 INF: FPGA: Recv ZSGSRD 35185
17-03-17 21:09:27.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:27.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:27.318 -07 000000541 INF: FPGA: Recv ZPIEZORD 31151
17-03-17 21:09:27.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:27.328 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.545 V. Piezo Error = -8.9 V.
17-03-17 21:09:27.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35187 (-165.5 uncal um), Error = 0.8 uncal um, Median = 35185 (-165.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35183 (-165.5 uncal um), Max = 35194 (-165.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:09:27.328 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35187, posNoise = 7, negNoise = 4
17-03-17 21:09:27.328 -07 000000610 INF: Z Motor: After move to -0.166349, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:27.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:09:27.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:27.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:27.328 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:27.328 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:27.328 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:09:27.328 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:27.338 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:09:27.338 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:09:27.338 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 21:09:27.338 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:09:27.338 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:09:27.338 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:09:27.338 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:09:27.338 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:09:27.338 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:09:27.338 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:09:27.348 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:09:27.348 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:09:27.348 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:09:27.348 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 21:09:27.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 36516 150\n [Camera]
17-03-17 21:09:27.548 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:09:27.728 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.973092,
17-03-17 21:09:27.978 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:09:27.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:09:27.978 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:27.978 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:09:27.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:09:27.978 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:27.988 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:27.988 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:09:27.988 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:27.988 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:09:28.168 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36516 811
17-03-17 21:09:28.318 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:09:28.358 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 367 ms.
17-03-17 21:09:28.358 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 367 ms.
17-03-17 21:09:28.358 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:28.358 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 21:09:28.358 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:09:28.358 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:09:28.358 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:28.368 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:09:28.368 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:09:28.368 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:09:28.528 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:09:28.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:09:28.528 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:28.528 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:09:28.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:09:28.528 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:28.538 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:28.538 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 21:09:28.538 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:28.538 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 21:09:28.718 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:09:28.718 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:09:28.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 36516 150' command took 2 ms to send, 1355 ms to get response, and 1366 ms overall
17-03-17 21:09:28.938 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 21:09:28.938 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:09:28.938 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:28.938 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 21:09:28.938 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:09:28.938 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:28.948 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:28.948 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 21:09:28.948 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:09:28.948 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:28.948 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 21:09:28.988 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 21:09:28.988 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:09:29.028 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 21:09:29.028 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 21:09:29.028 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:09:29.028 -07 000000438 INF: FPGA: Recv EMCUR 
17-03-17 21:09:29.038 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:09:29.038 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 21:09:29.538 -07 000000429 INF: FPGA: Recv EMIN
17-03-17 21:09:29.538 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 495 ms to get response, and 502 ms overall
17-03-17 21:09:29.538 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 21:09:29.538 -07 000000576 INF: FPGA: Recv EMCUR 
17-03-17 21:09:29.548 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:09:29.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:09:29.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.166372104643278. ------
17-03-17 21:09:29.548 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:29.548 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14042 mm
17-03-17 21:09:29.548 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:09:29.548 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:09:29.548 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30675, sync = True, waitForSettling = False)
17-03-17 21:09:29.548 -07 000000576 INF: Z Motor: Moving to -0.140421 mm, started at -0.166372 mm, distance = 25.95 um
17-03-17 21:09:29.548 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:29.548 -07 000000438 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 21:09:29.558 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:29.558 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:09:29.558 -07 000000382 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:09:29.568 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:09:29.568 -07 000000438 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:29.568 -07 000000576 INF: FPGA: Xmit ZDACW 30675\n [Z Motor]
17-03-17 21:09:29.568 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:09:29.568 -07 000000438 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 21:09:29.568 -07 000000438 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:09:29.578 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:09:29.578 -07 000000576 INF: FPGA: 'ZDACW 30675' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:09:29.588 -07 000000438 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:09:29.598 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:29.598 -07 000000382 INF: FPGA: Recv ZDACR 30675
17-03-17 21:09:29.608 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:09:29.608 -07 000000576 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 21:09:29.778 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:09:29.778 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:09:31.208 -07 000000433 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 21:09:31.208 -07 000000438 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1641 ms overall
17-03-17 21:09:31.208 -07 000000438 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:09:31.208 -07 000000438 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 21:09:31.208 -07 000000438 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1642 ms, distance = 14.919 mm, average velocity = 9.086 mm/sec
17-03-17 21:09:31.848 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:09:31.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:09:33.088 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.985358,
17-03-17 21:09:34.058 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:34.058 -07 000000382 INF: FPGA: Recv YRDPOS 122698
17-03-17 21:09:34.068 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:34.068 -07 000000438 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:34.098 -07 000000438 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:09:34.098 -07 000000438 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 21:09:34.098 -07 000000438 INF: Y Motor: Moved to 59.9111 after 4544 ms
17-03-17 21:09:34.098 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140421 mm (DAC = 30675)
17-03-17 21:09:34.098 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:34.098 -07 000000433 INF: FPGA: Recv ZSGSRD 31157
17-03-17 21:09:34.108 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:09:34.108 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:34.108 -07 000000382 INF: FPGA: Recv ZSGSRD 31144
17-03-17 21:09:34.118 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:34.118 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:34.118 -07 000000438 INF: FPGA: Recv ZSGSRD 31150
17-03-17 21:09:34.128 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:34.128 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:34.128 -07 000000433 INF: FPGA: Recv ZSGSRD 31148
17-03-17 21:09:34.138 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:34.138 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:34.138 -07 000000438 INF: FPGA: Recv ZSGSRD 31145
17-03-17 21:09:34.148 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:34.148 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:34.148 -07 000000415 INF: FPGA: Recv ZSGSRD 31146
17-03-17 21:09:34.158 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:34.158 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:34.158 -07 000000576 INF: FPGA: Recv ZSGSRD 31148
17-03-17 21:09:34.168 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:34.168 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:34.168 -07 000000382 INF: FPGA: Recv ZSGSRD 31152
17-03-17 21:09:34.178 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:34.178 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:34.178 -07 000000438 INF: FPGA: Recv ZSGSRD 31149
17-03-17 21:09:34.188 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:34.188 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:34.188 -07 000000433 INF: FPGA: Recv ZSGSRD 31152
17-03-17 21:09:34.198 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:34.198 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:34.198 -07 000000438 INF: FPGA: Recv ZPIEZORD 26872
17-03-17 21:09:34.208 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:34.208 -07 000000618 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.681 V. Piezo Error = -9.4 V.
17-03-17 21:09:34.208 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.4 um, Read 10 ADC samples: Avg = 31149 (-139.6 uncal um), Error = 0.8 uncal um, Median = 31148 (-139.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 31144 (-139.6 uncal um), Max = 31157 (-139.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:09:34.208 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31149, posNoise = 8, negNoise = 5
17-03-17 21:09:34.208 -07 000000618 INF: Z Motor: After move to -0.140421, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:34.208 -07 000000618 INF: Z Motor: Settle wait time = 4547 ms, measure time = 105 ms (allowed 150 ms), total time = 4652 ms
17-03-17 21:09:34.208 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:09:34.258 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4705 ms
17-03-17 21:09:34.258 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:09:34.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:34.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:34.258 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:34.258 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:09:34.258 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:34.258 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:34.258 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:09:34.268 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:09:34.288 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 21:09:34.288 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:09:34.288 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:09:34.288 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:09:34.308 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:09:34.308 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 21:09:34.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:09:34.348 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:09:34.548 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:09:34.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:09:34.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:09:34.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) start.
17-03-17 21:09:34.588 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:09:34.588 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 21:09:34.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 21:09:34.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 21:09:34.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:34.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:09:34.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 21:09:34.688 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:34.688 -07 000000501 INF: Image SNR check: start
17-03-17 21:09:34.688 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:34.698 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:09:34.698 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:09:34.698 -07 000000501 INF: Image SNR check: pass  [peak (Max-Min)=58.72]
17-03-17 21:09:34.698 -07 000000501 INF: Autofocus start
17-03-17 21:09:34.698 -07 000000501 INF: MeasureProfile start
17-03-17 21:09:34.718 -07 000000501 INF: MeasureProfile done
17-03-17 21:09:34.718 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:09:34.718 -07 000000501 INF: Autofocus finished
17-03-17 21:09:34.898 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:09:34.898 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:09:34.898 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140431136014847. ----------
17-03-17 21:09:34.898 -07 000000610 INF: Cycle	47	Tile	1	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:09:34.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29199, sync = True, waitForSettling = True)
17-03-17 21:09:34.908 -07 000000610 INF: Z Motor: Moving to -0.133664 mm, started at -0.140431 mm, distance = 6.77 um
17-03-17 21:09:34.908 -07 000000610 INF: FPGA: Xmit ZDACW 29199\n [Z Motor]
17-03-17 21:09:34.908 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:09:34.918 -07 000000610 INF: FPGA: 'ZDACW 29199' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:09:34.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:34.918 -07 000000618 INF: FPGA: Recv ZDACR 29199
17-03-17 21:09:34.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:34.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:09:35.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:35.078 -07 000000415 INF: FPGA: Recv ZSGSRD 30100
17-03-17 21:09:35.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:35.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:35.088 -07 000000576 INF: FPGA: Recv ZSGSRD 30097
17-03-17 21:09:35.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:35.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:35.098 -07 000000415 INF: FPGA: Recv ZSGSRD 30092
17-03-17 21:09:35.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:35.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:35.108 -07 000000438 INF: FPGA: Recv ZSGSRD 30097
17-03-17 21:09:35.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:09:35.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:35.118 -07 000000382 INF: FPGA: Recv ZSGSRD 30094
17-03-17 21:09:35.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:35.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:35.128 -07 000000576 INF: FPGA: Recv ZSGSRD 30095
17-03-17 21:09:35.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:35.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:35.138 -07 000000382 INF: FPGA: Recv ZSGSRD 30103
17-03-17 21:09:35.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:35.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:35.148 -07 000000415 INF: FPGA: Recv ZSGSRD 30095
17-03-17 21:09:35.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:35.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:35.158 -07 000000501 INF: FPGA: Recv ZSGSRD 30095
17-03-17 21:09:35.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:35.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:35.168 -07 000000433 INF: FPGA: Recv ZSGSRD 30096
17-03-17 21:09:35.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:35.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:35.178 -07 000000382 INF: FPGA: Recv ZPIEZORD 25743
17-03-17 21:09:35.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:35.188 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.455 V. Piezo Error = -9.6 V.
17-03-17 21:09:35.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30096 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30096 (-132.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30092 (-132.9 uncal um), Max = 30103 (-132.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:09:35.188 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30096, posNoise = 7, negNoise = 4
17-03-17 21:09:35.188 -07 000000610 INF: Z Motor: After move to -0.133664, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:35.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:09:35.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:35.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:35.188 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:35.188 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:35.188 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:09:35.188 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:35.188 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:09:35.188 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:09:35.188 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:09:35.188 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:09:35.188 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:09:35.188 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:09:35.188 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:09:35.188 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:09:35.198 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:09:35.198 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:09:35.208 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 21:09:35.208 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:09:35.208 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:09:35.208 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:09:35.218 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:09:35.218 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 21:09:35.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 29376 150\n [Camera]
17-03-17 21:09:35.418 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:09:35.848 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:09:35.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:09:35.848 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:35.848 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:35.848 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:09:35.848 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:09:35.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:09:35.858 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:35.858 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:35.858 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1054871600, 0x0, 418435064) start.
17-03-17 21:09:36.038 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29376 811
17-03-17 21:09:36.188 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:09:36.228 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:09:36.228 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:09:36.228 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:36.228 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1054871600, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:09:36.228 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:09:36.228 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:36.238 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:09:36.238 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:09:36.238 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:09:36.238 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:09:36.398 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:09:36.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:09:36.398 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:36.398 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:36.398 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1090293864, 0x0, 391868352) start.
17-03-17 21:09:36.398 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:09:36.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:09:36.398 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:36.398 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:36.398 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1125716128, 0x0, 418435064) start.
17-03-17 21:09:36.588 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:09:36.588 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:09:36.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 29376 150' command took 2 ms to send, 1356 ms to get response, and 1365 ms overall
17-03-17 21:09:36.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:09:36.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133666440629573. ------
17-03-17 21:09:36.708 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:36.708 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.14015 mm
17-03-17 21:09:36.708 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:09:36.708 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30616, sync = True, waitForSettling = False)
17-03-17 21:09:36.708 -07 000000501 INF: Z Motor: Moving to -0.140151 mm, started at -0.133666 mm, distance = -6.48 um
17-03-17 21:09:36.708 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:36.708 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:09:36.708 -07 000000438 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 21:09:36.718 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:09:36.718 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:36.718 -07 000000627 INF: FPGA: Recv YRDPOS 122698
17-03-17 21:09:36.728 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:09:36.728 -07 000000438 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:36.728 -07 000000438 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:09:36.728 -07 000000438 INF: Y Motor: Moving 1330 steps2
17-03-17 21:09:36.728 -07 000000501 INF: FPGA: Xmit ZDACW 30616\n [Z Motor]
17-03-17 21:09:36.728 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:09:36.738 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:09:36.738 -07 000000501 INF: FPGA: 'ZDACW 30616' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:09:36.748 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:09:36.758 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:36.758 -07 000000627 INF: FPGA: Recv ZDACR 30616
17-03-17 21:09:36.768 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:09:36.768 -07 000000501 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 21:09:36.788 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1125716128, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:09:36.788 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:09:36.788 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:36.788 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:09:36.788 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1090293864, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:09:36.788 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:09:36.788 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:36.788 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:09:36.788 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:09:36.798 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:09:36.848 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:09:36.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:09:36.938 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:09:36.938 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:09:37.118 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:09:37.118 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:09:37.148 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:37.158 -07 000000415 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:09:37.158 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:09:37.158 -07 000000438 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:37.158 -07 000000438 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:09:37.158 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 21:09:38.108 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:38.108 -07 000000627 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:09:38.118 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:38.118 -07 000000438 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:38.138 -07 000000438 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:09:38.138 -07 000000438 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:09:38.138 -07 000000438 INF: Y Motor: Moved to 60.7329 after 1428 ms (table move)
17-03-17 21:09:38.138 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140151 mm (DAC = 30616)
17-03-17 21:09:38.138 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:38.148 -07 000000476 INF: FPGA: Recv ZSGSRD 31108
17-03-17 21:09:38.148 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:09:38.148 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:38.148 -07 000000433 INF: FPGA: Recv ZSGSRD 31106
17-03-17 21:09:38.158 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:09:38.158 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:38.158 -07 000000501 INF: FPGA: Recv ZSGSRD 31107
17-03-17 21:09:38.168 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:38.168 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:38.168 -07 000000415 INF: FPGA: Recv ZSGSRD 31109
17-03-17 21:09:38.178 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:38.178 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:38.178 -07 000000501 INF: FPGA: Recv ZSGSRD 31099
17-03-17 21:09:38.188 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:38.188 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:38.188 -07 000000433 INF: FPGA: Recv ZSGSRD 31108
17-03-17 21:09:38.198 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:38.198 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:38.198 -07 000000576 INF: FPGA: Recv ZSGSRD 31113
17-03-17 21:09:38.208 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:38.208 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:38.208 -07 000000382 INF: FPGA: Recv ZSGSRD 31105
17-03-17 21:09:38.218 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:38.218 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:38.218 -07 000000438 INF: FPGA: Recv ZSGSRD 31098
17-03-17 21:09:38.228 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:38.228 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:38.228 -07 000000415 INF: FPGA: Recv ZSGSRD 31103
17-03-17 21:09:38.238 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:38.238 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:38.238 -07 000000576 INF: FPGA: Recv ZPIEZORD 27111
17-03-17 21:09:38.248 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:38.248 -07 000000618 INF: Z Motor: Piezo is near 37.9 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.672 V. Piezo Error = -8.8 V.
17-03-17 21:09:38.248 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.2 um, Read 10 ADC samples: Avg = 31106 (-139.4 uncal um), Error = 0.8 uncal um, Median = 31106 (-139.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 31098 (-139.3 uncal um), Max = 31113 (-139.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:09:38.248 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31106, posNoise = 7, negNoise = 8
17-03-17 21:09:38.248 -07 000000618 INF: Z Motor: After move to -0.140151, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:38.248 -07 000000618 INF: Z Motor: Settle wait time = 1431 ms, measure time = 102 ms (allowed 150 ms), total time = 1533 ms
17-03-17 21:09:38.248 -07 000000618 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:09:38.298 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 21:09:38.298 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:09:38.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:38.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:38.298 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:38.298 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:38.298 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:09:38.298 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:38.298 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:09:38.298 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:09:38.308 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:09:38.308 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:09:38.308 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:09:38.308 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:09:38.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:09:38.358 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:09:38.448 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.011254,
17-03-17 21:09:38.558 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:09:38.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:09:38.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:09:38.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:09:38.598 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:09:38.598 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 21:09:38.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 21:09:38.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:09:38.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:38.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:09:38.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:09:38.698 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:38.698 -07 000000576 INF: Autofocus start
17-03-17 21:09:38.698 -07 000000576 INF: MeasureProfile start
17-03-17 21:09:38.698 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:38.708 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:09:38.708 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:09:38.708 -07 000000576 INF: MeasureProfile done
17-03-17 21:09:38.708 -07 000000576 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:09:38.708 -07 000000576 INF: Autofocus finished
17-03-17 21:09:38.908 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:09:38.908 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:09:38.908 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.140154894892751. ----------
17-03-17 21:09:38.908 -07 000000610 INF: Cycle	47	Tile	2	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:09:38.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29141, sync = True, waitForSettling = True)
17-03-17 21:09:38.918 -07 000000610 INF: Z Motor: Moving to -0.133399 mm, started at -0.140155 mm, distance = 6.76 um
17-03-17 21:09:38.918 -07 000000610 INF: FPGA: Xmit ZDACW 29141\n [Z Motor]
17-03-17 21:09:38.918 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:09:38.928 -07 000000610 INF: FPGA: 'ZDACW 29141' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:09:38.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:38.928 -07 000000438 INF: FPGA: Recv ZDACR 29141
17-03-17 21:09:38.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:38.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:09:39.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:39.088 -07 000000576 INF: FPGA: Recv ZSGSRD 30052
17-03-17 21:09:39.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:39.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:39.098 -07 000000382 INF: FPGA: Recv ZSGSRD 30053
17-03-17 21:09:39.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:39.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:39.108 -07 000000576 INF: FPGA: Recv ZSGSRD 30056
17-03-17 21:09:39.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:39.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:39.118 -07 000000433 INF: FPGA: Recv ZSGSRD 30054
17-03-17 21:09:39.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:39.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:39.128 -07 000000415 INF: FPGA: Recv ZSGSRD 30057
17-03-17 21:09:39.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:39.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:39.138 -07 000000438 INF: FPGA: Recv ZSGSRD 30054
17-03-17 21:09:39.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:39.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:39.148 -07 000000438 INF: FPGA: Recv ZSGSRD 30052
17-03-17 21:09:39.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:39.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:39.158 -07 000000576 INF: FPGA: Recv ZSGSRD 30054
17-03-17 21:09:39.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:39.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:39.168 -07 000000476 INF: FPGA: Recv ZSGSRD 30051
17-03-17 21:09:39.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:39.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:39.178 -07 000000438 INF: FPGA: Recv ZSGSRD 30052
17-03-17 21:09:39.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:39.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:39.188 -07 000000618 INF: FPGA: Recv ZPIEZORD 25697
17-03-17 21:09:39.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:39.198 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.447 V. Piezo Error = -9.6 V.
17-03-17 21:09:39.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30054 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30054 (-132.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30051 (-132.6 uncal um), Max = 30057 (-132.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:09:39.198 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30054, posNoise = 3, negNoise = 3
17-03-17 21:09:39.198 -07 000000610 INF: Z Motor: After move to -0.133399, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:39.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:09:39.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:39.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:39.198 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:39.198 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:39.198 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:09:39.198 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:39.198 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:09:39.198 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:09:39.198 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:09:39.198 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:09:39.198 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:09:39.198 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:09:39.208 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:09:39.208 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:09:39.208 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:09:39.208 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:09:39.218 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:09:39.218 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:09:39.218 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:09:39.218 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:09:39.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 29317 150\n [Camera]
17-03-17 21:09:39.428 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:09:39.848 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:09:39.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:09:39.848 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:39.848 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:09:39.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:09:39.858 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:39.858 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:39.858 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 21:09:39.858 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:39.858 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:09:40.048 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29317 812
17-03-17 21:09:40.188 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:09:40.248 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:09:40.248 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:09:40.248 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:40.248 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 21:09:40.248 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:09:40.258 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:40.258 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:09:40.258 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:09:40.258 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:09:40.268 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 21:09:40.398 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:09:40.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:09:40.398 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:40.398 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:09:40.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:09:40.398 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:40.408 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:40.408 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:09:40.408 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:40.408 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:09:40.588 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:09:40.588 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:09:40.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 29317 150' command took 2 ms to send, 1356 ms to get response, and 1365 ms overall
17-03-17 21:09:40.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:09:40.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.133396623719619. ------
17-03-17 21:09:40.598 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:40.598 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13977 mm
17-03-17 21:09:40.598 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:09:40.708 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:40.708 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 113 ms overall
17-03-17 21:09:40.708 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:09:40.708 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:09:40.708 -07 000000476 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 21:09:40.708 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30534, sync = True, waitForSettling = False)
17-03-17 21:09:40.708 -07 000000627 INF: Z Motor: Moving to -0.139776 mm, started at -0.133397 mm, distance = -6.38 um
17-03-17 21:09:40.718 -07 000000627 INF: FPGA: Xmit ZDACW 30534\n [Z Motor]
17-03-17 21:09:40.718 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:09:40.728 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:40.728 -07 000000627 INF: FPGA: 'ZDACW 30534' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:09:40.728 -07 000000541 INF: FPGA: Recv YRDPOS 124382
17-03-17 21:09:40.738 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:09:40.738 -07 000000476 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:40.738 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:40.738 -07 000000501 INF: FPGA: Recv ZDACR 30534
17-03-17 21:09:40.738 -07 000000476 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:09:40.738 -07 000000476 INF: Y Motor: Moving 1343 steps-20
17-03-17 21:09:40.748 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:09:40.748 -07 000000627 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 21:09:40.748 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:09:40.798 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:09:40.798 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:09:40.798 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:40.798 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:09:40.798 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:09:40.798 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:40.798 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:40.798 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:40.798 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:09:40.808 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 21:09:40.908 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:09:40.908 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-17 21:09:41.118 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:09:41.118 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 21:09:41.158 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:41.158 -07 000000012 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:09:41.168 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:09:41.168 -07 000000476 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:41.168 -07 000000476 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:09:41.168 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.840 mm, average velocity = 2.192 mm/sec
17-03-17 21:09:41.848 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:09:41.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:09:42.118 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:42.118 -07 000000576 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:09:42.128 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:42.128 -07 000000476 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:42.148 -07 000000476 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:09:42.148 -07 000000476 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:09:42.148 -07 000000476 INF: Y Motor: Moved to 61.5640 after 1435 ms (table move)
17-03-17 21:09:42.148 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139776 mm (DAC = 30534)
17-03-17 21:09:42.148 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:42.158 -07 000000415 INF: FPGA: Recv ZSGSRD 31057
17-03-17 21:09:42.158 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:09:42.158 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:42.158 -07 000000459 INF: FPGA: Recv ZSGSRD 31049
17-03-17 21:09:42.168 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:42.168 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:42.168 -07 000000541 INF: FPGA: Recv ZSGSRD 31049
17-03-17 21:09:42.178 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:42.178 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:42.178 -07 000000382 INF: FPGA: Recv ZSGSRD 31039
17-03-17 21:09:42.188 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:42.188 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:42.188 -07 000000012 INF: FPGA: Recv ZSGSRD 31051
17-03-17 21:09:42.198 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:42.198 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:42.198 -07 000000431 INF: FPGA: Recv ZSGSRD 31055
17-03-17 21:09:42.208 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:42.208 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:42.208 -07 000000627 INF: FPGA: Recv ZSGSRD 31041
17-03-17 21:09:42.218 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:42.218 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:42.218 -07 000000480 INF: FPGA: Recv ZSGSRD 31038
17-03-17 21:09:42.228 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:42.228 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:42.228 -07 000000626 INF: FPGA: Recv ZSGSRD 31046
17-03-17 21:09:42.238 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:42.238 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:42.238 -07 000000541 INF: FPGA: Recv ZSGSRD 31046
17-03-17 21:09:42.248 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:42.248 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:42.248 -07 000000476 INF: FPGA: Recv ZPIEZORD 27053
17-03-17 21:09:42.258 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:42.258 -07 000000438 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.659 V. Piezo Error = -8.8 V.
17-03-17 21:09:42.258 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.8 um, Read 10 ADC samples: Avg = 31047 (-139.0 uncal um), Error = 0.8 uncal um, Median = 31048 (-139.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 31038 (-138.9 uncal um), Max = 31057 (-139.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:09:42.258 -07 000000438 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31047, posNoise = 10, negNoise = 9
17-03-17 21:09:42.258 -07 000000438 INF: Z Motor: After move to -0.139776, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:42.258 -07 000000438 INF: Z Motor: Settle wait time = 1439 ms, measure time = 103 ms (allowed 150 ms), total time = 1542 ms
17-03-17 21:09:42.258 -07 000000438 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:09:42.308 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1707 ms
17-03-17 21:09:42.308 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:09:42.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:42.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:42.308 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:42.308 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:42.308 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:09:42.308 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:42.308 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:09:42.308 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:09:42.318 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:09:42.318 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:09:42.328 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 21:09:42.328 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:09:42.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:09:42.368 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:09:42.568 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:09:42.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:09:42.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:09:42.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:09:42.608 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:09:42.608 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 21:09:42.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:09:42.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:09:42.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:42.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:09:42.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:09:42.708 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:42.708 -07 000000433 INF: Autofocus start
17-03-17 21:09:42.708 -07 000000433 INF: MeasureProfile start
17-03-17 21:09:42.708 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:42.718 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:09:42.718 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:09:42.718 -07 000000433 INF: MeasureProfile done
17-03-17 21:09:42.718 -07 000000433 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:09:42.718 -07 000000433 INF: Autofocus finished
17-03-17 21:09:42.918 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:09:42.918 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:09:42.918 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139775866376387. ----------
17-03-17 21:09:42.918 -07 000000610 INF: Cycle	47	Tile	3	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:09:42.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29058, sync = True, waitForSettling = True)
17-03-17 21:09:42.928 -07 000000610 INF: Z Motor: Moving to -0.133019 mm, started at -0.139776 mm, distance = 6.76 um
17-03-17 21:09:42.928 -07 000000610 INF: FPGA: Xmit ZDACW 29058\n [Z Motor]
17-03-17 21:09:42.928 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 21:09:42.938 -07 000000610 INF: FPGA: 'ZDACW 29058' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:09:42.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:42.938 -07 000000476 INF: FPGA: Recv ZDACR 29058
17-03-17 21:09:42.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:42.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:09:43.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:43.098 -07 000000429 INF: FPGA: Recv ZSGSRD 29997
17-03-17 21:09:43.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:43.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:43.108 -07 000000382 INF: FPGA: Recv ZSGSRD 29997
17-03-17 21:09:43.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:43.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:43.118 -07 000000618 INF: FPGA: Recv ZSGSRD 30002
17-03-17 21:09:43.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:43.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:43.128 -07 000000480 INF: FPGA: Recv ZSGSRD 29988
17-03-17 21:09:43.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:43.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:43.138 -07 000000618 INF: FPGA: Recv ZSGSRD 29997
17-03-17 21:09:43.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:43.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:43.148 -07 000000480 INF: FPGA: Recv ZSGSRD 29992
17-03-17 21:09:43.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:43.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:43.158 -07 000000431 INF: FPGA: Recv ZSGSRD 29993
17-03-17 21:09:43.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:43.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:43.168 -07 000000459 INF: FPGA: Recv ZSGSRD 29999
17-03-17 21:09:43.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:43.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:43.178 -07 000000576 INF: FPGA: Recv ZSGSRD 29993
17-03-17 21:09:43.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:43.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:43.188 -07 000000382 INF: FPGA: Recv ZSGSRD 30001
17-03-17 21:09:43.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:43.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:43.198 -07 000000618 INF: FPGA: Recv ZPIEZORD 25684
17-03-17 21:09:43.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:43.208 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.434 V. Piezo Error = -9.5 V.
17-03-17 21:09:43.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29996 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29997 (-132.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29988 (-132.2 uncal um), Max = 30002 (-132.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:09:43.208 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29996, posNoise = 6, negNoise = 8
17-03-17 21:09:43.208 -07 000000610 INF: Z Motor: After move to -0.133019, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:43.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:09:43.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:43.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:43.208 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:43.208 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:43.208 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:09:43.208 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:09:43.208 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:09:43.208 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:09:43.208 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:43.208 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:09:43.218 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:09:43.218 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:09:43.218 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:09:43.218 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:09:43.218 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:09:43.218 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:09:43.228 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:09:43.228 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:09:43.228 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:09:43.228 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:09:43.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 29235 150\n [Camera]
17-03-17 21:09:43.428 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:09:43.808 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.008536,
17-03-17 21:09:43.858 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:09:43.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:09:43.858 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:43.858 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:09:43.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:09:43.858 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:43.858 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 21:09:43.858 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:43.868 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:43.868 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:09:44.048 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29235 811
17-03-17 21:09:44.198 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:09:44.238 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:09:44.238 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:09:44.238 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:44.238 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:09:44.238 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:09:44.238 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:44.238 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:44.238 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:09:44.248 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:09:44.248 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:09:44.398 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:09:44.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:09:44.398 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:44.408 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:09:44.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:09:44.408 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:44.408 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:44.408 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 21:09:44.408 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:44.408 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 21:09:44.588 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-17 21:09:44.598 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:09:44.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 29235 150' command took 2 ms to send, 1360 ms to get response, and 1365 ms overall
17-03-17 21:09:44.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:09:44.598 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.133024019415397. ------
17-03-17 21:09:44.598 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:44.598 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13936 mm
17-03-17 21:09:44.598 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:09:44.608 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:44.608 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:09:44.608 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30443, sync = True, waitForSettling = False)
17-03-17 21:09:44.608 -07 000000576 INF: Z Motor: Moving to -0.139359 mm, started at -0.133024 mm, distance = -6.34 um
17-03-17 21:09:44.608 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:09:44.608 -07 000000541 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 21:09:44.608 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:09:44.618 -07 000000576 INF: FPGA: Xmit ZDACW 30443\n [Z Motor]
17-03-17 21:09:44.618 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:09:44.628 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:44.628 -07 000000576 INF: FPGA: 'ZDACW 30443' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:09:44.628 -07 000000431 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:09:44.638 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:09:44.638 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:44.638 -07 000000541 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:44.638 -07 000000541 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:09:44.638 -07 000000541 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:09:44.638 -07 000000569 INF: FPGA: Recv ZDACR 30443
17-03-17 21:09:44.648 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:09:44.648 -07 000000576 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 21:09:44.648 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:09:44.808 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:09:44.808 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 21:09:44.808 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:09:44.808 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:09:44.808 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:09:44.808 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:09:44.808 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:44.808 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:44.818 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:09:44.818 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:09:44.818 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 21:09:44.818 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 21:09:45.018 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:09:45.018 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:09:45.058 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:45.058 -07 000000569 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:09:45.068 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:09:45.068 -07 000000541 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:45.068 -07 000000541 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 21:09:45.068 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec
17-03-17 21:09:46.018 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:46.018 -07 000000382 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:09:46.028 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:46.028 -07 000000541 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:46.048 -07 000000541 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:09:46.048 -07 000000541 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:09:46.048 -07 000000541 INF: Y Motor: Moved to 62.3955 after 1442 ms (table move)
17-03-17 21:09:46.048 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139359 mm (DAC = 30443)
17-03-17 21:09:46.048 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:46.048 -07 000000431 INF: FPGA: Recv ZSGSRD 30987
17-03-17 21:09:46.058 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:09:46.058 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:46.058 -07 000000576 INF: FPGA: Recv ZSGSRD 30989
17-03-17 21:09:46.068 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:46.068 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:46.068 -07 000000576 INF: FPGA: Recv ZSGSRD 30989
17-03-17 21:09:46.078 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:46.078 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:46.078 -07 000000459 INF: FPGA: Recv ZSGSRD 30987
17-03-17 21:09:46.088 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:46.088 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:46.088 -07 000000431 INF: FPGA: Recv ZSGSRD 30984
17-03-17 21:09:46.098 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:46.098 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:46.098 -07 000000382 INF: FPGA: Recv ZSGSRD 30988
17-03-17 21:09:46.108 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:09:46.108 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:46.108 -07 000000459 INF: FPGA: Recv ZSGSRD 30972
17-03-17 21:09:46.118 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:46.118 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:46.118 -07 000000480 INF: FPGA: Recv ZSGSRD 30981
17-03-17 21:09:46.128 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:46.128 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:46.128 -07 000000576 INF: FPGA: Recv ZSGSRD 30987
17-03-17 21:09:46.138 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:46.138 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:46.138 -07 000000382 INF: FPGA: Recv ZSGSRD 30985
17-03-17 21:09:46.148 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:46.148 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:46.148 -07 000000382 INF: FPGA: Recv ZPIEZORD 27016
17-03-17 21:09:46.158 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:46.158 -07 000000618 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.645 V. Piezo Error = -8.7 V.
17-03-17 21:09:46.158 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.4 um, Read 10 ADC samples: Avg = 30985 (-138.6 uncal um), Error = 0.8 uncal um, Median = 30987 (-138.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30972 (-138.5 uncal um), Max = 30989 (-138.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 21:09:46.158 -07 000000618 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30985, posNoise = 4, negNoise = 13
17-03-17 21:09:46.158 -07 000000618 INF: Z Motor: After move to -0.139359, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:46.158 -07 000000618 INF: Z Motor: Settle wait time = 1445 ms, measure time = 105 ms (allowed 150 ms), total time = 1550 ms
17-03-17 21:09:46.158 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:09:46.208 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 21:09:46.208 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:09:46.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:46.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:46.208 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:46.208 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:46.208 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:09:46.208 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:46.208 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:09:46.208 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:09:46.218 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:09:46.218 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:09:46.228 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:09:46.228 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 21:09:46.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:09:46.278 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:09:46.478 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:09:46.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:09:46.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:09:46.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 21:09:46.518 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:09:46.518 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 21:09:46.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 21:09:46.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:09:46.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:46.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:09:46.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:09:46.618 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:46.618 -07 000000438 INF: Autofocus start
17-03-17 21:09:46.618 -07 000000438 INF: MeasureProfile start
17-03-17 21:09:46.618 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:46.628 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:09:46.628 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:09:46.628 -07 000000438 INF: MeasureProfile done
17-03-17 21:09:46.628 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:09:46.628 -07 000000438 INF: Autofocus finished
17-03-17 21:09:46.828 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:09:46.828 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:09:46.828 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139377565223598. ----------
17-03-17 21:09:46.828 -07 000000610 INF: Cycle	47	Tile	4	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:09:46.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28951, sync = True, waitForSettling = True)
17-03-17 21:09:46.838 -07 000000610 INF: Z Motor: Moving to -0.132529 mm, started at -0.139378 mm, distance = 6.85 um
17-03-17 21:09:46.838 -07 000000610 INF: FPGA: Xmit ZDACW 28951\n [Z Motor]
17-03-17 21:09:46.838 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:09:46.848 -07 000000610 INF: FPGA: 'ZDACW 28951' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:09:46.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:46.848 -07 000000382 INF: FPGA: Recv ZDACR 28951
17-03-17 21:09:46.848 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:09:46.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:09:46.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:46.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:09:47.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:47.008 -07 000000541 INF: FPGA: Recv ZSGSRD 29919
17-03-17 21:09:47.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:47.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:47.018 -07 000000541 INF: FPGA: Recv ZSGSRD 29924
17-03-17 21:09:47.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:47.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:47.028 -07 000000576 INF: FPGA: Recv ZSGSRD 29921
17-03-17 21:09:47.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:47.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:47.038 -07 000000618 INF: FPGA: Recv ZSGSRD 29918
17-03-17 21:09:47.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:47.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:47.048 -07 000000618 INF: FPGA: Recv ZSGSRD 29923
17-03-17 21:09:47.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:47.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:47.058 -07 000000431 INF: FPGA: Recv ZSGSRD 29921
17-03-17 21:09:47.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:47.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:47.068 -07 000000431 INF: FPGA: Recv ZSGSRD 29914
17-03-17 21:09:47.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:47.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:47.078 -07 000000431 INF: FPGA: Recv ZSGSRD 29919
17-03-17 21:09:47.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:47.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:47.088 -07 000000459 INF: FPGA: Recv ZSGSRD 29924
17-03-17 21:09:47.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:47.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:47.098 -07 000000459 INF: FPGA: Recv ZSGSRD 29923
17-03-17 21:09:47.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:47.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:47.108 -07 000000459 INF: FPGA: Recv ZPIEZORD 25649
17-03-17 21:09:47.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:47.118 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.418 V. Piezo Error = -9.4 V.
17-03-17 21:09:47.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29921 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29921 (-131.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29914 (-131.7 uncal um), Max = 29924 (-131.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:09:47.118 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29921, posNoise = 3, negNoise = 7
17-03-17 21:09:47.118 -07 000000610 INF: Z Motor: After move to -0.132529, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:47.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:09:47.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:47.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:47.118 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:09:47.118 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:09:47.118 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:47.118 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:47.118 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:09:47.118 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:47.118 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:09:47.118 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:09:47.118 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 21:09:47.118 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:09:47.128 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:09:47.128 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:09:47.128 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:09:47.128 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:09:47.138 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:09:47.138 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:09:47.138 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:09:47.138 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:09:47.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 29127 150\n [Camera]
17-03-17 21:09:47.338 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:09:47.768 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:09:47.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:09:47.768 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:47.768 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:09:47.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:09:47.768 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:47.768 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:47.768 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-17 21:09:47.768 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:47.768 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) start.
17-03-17 21:09:47.958 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29127 811
17-03-17 21:09:48.108 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:09:48.148 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:09:48.148 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:09:48.148 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:48.148 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:09:48.148 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:09:48.148 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:48.148 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:48.148 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:48.148 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:09:48.158 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:09:48.308 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:09:48.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:09:48.318 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:48.318 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:48.318 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:09:48.318 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:09:48.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:09:48.318 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:48.318 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:48.318 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1054871600, 0x0, 418435064) start.
17-03-17 21:09:48.508 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:09:48.508 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:09:48.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 29127 150' command took 2 ms to send, 1360 ms to get response, and 1368 ms overall
17-03-17 21:09:48.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:09:48.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132542203504765. ------
17-03-17 21:09:48.508 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:48.508 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13919 mm
17-03-17 21:09:48.508 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:09:48.508 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 30407, sync = True, waitForSettling = False)
17-03-17 21:09:48.508 -07 000000569 INF: Z Motor: Moving to -0.139194 mm, started at -0.132542 mm, distance = -6.65 um
17-03-17 21:09:48.508 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:48.508 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:09:48.508 -07 000000382 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 21:09:48.518 -07 000000569 INF: FPGA: Xmit ZDACW 30407\n [Z Motor]
17-03-17 21:09:48.518 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:09:48.518 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:09:48.528 -07 000000569 INF: FPGA: 'ZDACW 30407' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:09:48.528 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:09:48.538 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:48.648 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:48.648 -07 000000459 INF: FPGA: Recv YRDPOS 127787
17-03-17 21:09:48.648 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 132 ms overall
17-03-17 21:09:48.648 -07 000000382 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:48.648 -07 000000576 INF: FPGA: Recv ZDACR 30407
17-03-17 21:09:48.648 -07 000000382 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:09:48.648 -07 000000382 INF: Y Motor: Moving 1339 steps-15
17-03-17 21:09:48.658 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 129 ms overall
17-03-17 21:09:48.658 -07 000000569 INF: Z Motor: MoveAbsStepped took 141 ms (did NOT wait for settling yet))
17-03-17 21:09:48.658 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:09:48.698 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:09:48.698 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:09:48.698 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:48.698 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1054871600, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 21:09:48.698 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:09:48.698 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:48.708 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:09:48.708 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:09:48.708 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:09:48.718 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:09:48.728 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:09:48.728 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 21:09:49.028 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:09:49.028 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 21:09:49.068 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:49.068 -07 000000459 INF: FPGA: Recv YRDPOS 129483
17-03-17 21:09:49.078 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:09:49.078 -07 000000382 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:49.078 -07 000000382 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 21:09:49.078 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.837 mm, average velocity = 2.186 mm/sec
17-03-17 21:09:49.168 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.975845,
17-03-17 21:09:50.028 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:50.028 -07 000000576 INF: FPGA: Recv YRDPOS 129483
17-03-17 21:09:50.038 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:50.038 -07 000000382 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:50.058 -07 000000382 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:09:50.058 -07 000000382 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:09:50.058 -07 000000382 INF: Y Motor: Moved to 63.2241 after 1545 ms (table move)
17-03-17 21:09:50.058 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139194 mm (DAC = 30407)
17-03-17 21:09:50.058 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:50.068 -07 000000431 INF: FPGA: Recv ZSGSRD 30964
17-03-17 21:09:50.068 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:09:50.068 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:50.068 -07 000000569 INF: FPGA: Recv ZSGSRD 30954
17-03-17 21:09:50.078 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:50.078 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:50.078 -07 000000431 INF: FPGA: Recv ZSGSRD 30959
17-03-17 21:09:50.088 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:50.088 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:50.088 -07 000000382 INF: FPGA: Recv ZSGSRD 30959
17-03-17 21:09:50.098 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:50.098 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:50.098 -07 000000459 INF: FPGA: Recv ZSGSRD 30962
17-03-17 21:09:50.108 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:50.108 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:50.108 -07 000000382 INF: FPGA: Recv ZSGSRD 30960
17-03-17 21:09:50.118 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:50.118 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:50.118 -07 000000429 INF: FPGA: Recv ZSGSRD 30959
17-03-17 21:09:50.128 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:50.128 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:50.128 -07 000000382 INF: FPGA: Recv ZSGSRD 30952
17-03-17 21:09:50.138 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:50.138 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:50.138 -07 000000541 INF: FPGA: Recv ZSGSRD 30959
17-03-17 21:09:50.148 -07 000000438 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:50.148 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:50.148 -07 000000576 INF: FPGA: Recv ZSGSRD 30955
17-03-17 21:09:50.158 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:50.158 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:50.158 -07 000000541 INF: FPGA: Recv ZPIEZORD 27040
17-03-17 21:09:50.168 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:50.168 -07 000000438 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.640 V. Piezo Error = -8.6 V.
17-03-17 21:09:50.168 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30958 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30959 (-138.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30952 (-138.4 uncal um), Max = 30964 (-138.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:09:50.168 -07 000000438 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30958, posNoise = 6, negNoise = 6
17-03-17 21:09:50.168 -07 000000438 INF: Z Motor: After move to -0.139194, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:50.168 -07 000000438 INF: Z Motor: Settle wait time = 1548 ms, measure time = 103 ms (allowed 150 ms), total time = 1651 ms
17-03-17 21:09:50.168 -07 000000438 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:09:50.218 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1704 ms
17-03-17 21:09:50.218 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:09:50.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:50.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:50.218 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:50.218 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:50.218 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:09:50.218 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:50.218 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:09:50.218 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:09:50.218 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:09:50.228 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:09:50.238 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:09:50.238 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:09:50.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:09:50.288 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:09:50.488 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:09:50.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:09:50.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:09:50.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:09:50.528 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:09:50.528 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:09:50.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 286 ms overall
17-03-17 21:09:50.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:09:50.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:50.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:09:50.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:09:50.628 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:50.628 -07 000000576 INF: Autofocus start
17-03-17 21:09:50.628 -07 000000576 INF: MeasureProfile start
17-03-17 21:09:50.628 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:50.638 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:09:50.638 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:09:50.638 -07 000000576 INF: MeasureProfile done
17-03-17 21:09:50.638 -07 000000576 INF: X=32  Z correction [um]=0.1299841
17-03-17 21:09:50.638 -07 000000576 INF: Autofocus finished
17-03-17 21:09:50.838 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:09:50.838 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 21:09:50.838 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.139204111495771. ----------
17-03-17 21:09:50.838 -07 000000610 INF: Cycle	47	Tile	5	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:09:50.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28948, sync = True, waitForSettling = True)
17-03-17 21:09:50.848 -07 000000610 INF: Z Motor: Moving to -0.132515 mm, started at -0.139204 mm, distance = 6.69 um
17-03-17 21:09:50.848 -07 000000610 INF: FPGA: Xmit ZDACW 28948\n [Z Motor]
17-03-17 21:09:50.848 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:09:50.858 -07 000000610 INF: FPGA: 'ZDACW 28948' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:09:50.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:50.858 -07 000000459 INF: FPGA: Recv ZDACR 28948
17-03-17 21:09:50.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:50.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:09:51.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:51.018 -07 000000429 INF: FPGA: Recv ZSGSRD 29923
17-03-17 21:09:51.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:51.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:51.028 -07 000000569 INF: FPGA: Recv ZSGSRD 29912
17-03-17 21:09:51.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:09:51.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:51.038 -07 000000429 INF: FPGA: Recv ZSGSRD 29920
17-03-17 21:09:51.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:51.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:51.048 -07 000000459 INF: FPGA: Recv ZSGSRD 29921
17-03-17 21:09:51.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:51.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:51.058 -07 000000429 INF: FPGA: Recv ZSGSRD 29911
17-03-17 21:09:51.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:51.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:51.068 -07 000000431 INF: FPGA: Recv ZSGSRD 29922
17-03-17 21:09:51.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:51.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:51.078 -07 000000382 INF: FPGA: Recv ZSGSRD 29915
17-03-17 21:09:51.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:51.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:51.088 -07 000000459 INF: FPGA: Recv ZSGSRD 29917
17-03-17 21:09:51.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:51.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:51.098 -07 000000429 INF: FPGA: Recv ZSGSRD 29922
17-03-17 21:09:51.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:51.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:51.108 -07 000000541 INF: FPGA: Recv ZSGSRD 29916
17-03-17 21:09:51.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:51.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:51.118 -07 000000382 INF: FPGA: Recv ZPIEZORD 25647
17-03-17 21:09:51.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:51.128 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -9.4 V.
17-03-17 21:09:51.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29918 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29918 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29911 (-131.7 uncal um), Max = 29923 (-131.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:09:51.128 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29918, posNoise = 5, negNoise = 7
17-03-17 21:09:51.128 -07 000000610 INF: Z Motor: After move to -0.132515, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:51.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:09:51.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:51.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:51.128 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:51.128 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:51.128 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:09:51.128 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:51.128 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:09:51.128 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:09:51.128 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:09:51.128 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:09:51.128 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:09:51.128 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:09:51.138 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:09:51.138 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:09:51.138 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:09:51.138 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:09:51.148 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:09:51.148 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:09:51.148 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:09:51.148 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:09:51.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 29125 150\n [Camera]
17-03-17 21:09:51.348 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:09:51.778 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:09:51.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:09:51.778 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:51.778 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:09:51.778 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:51.778 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 21:09:51.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:09:51.778 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:51.788 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:51.788 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:09:51.848 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:09:51.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:09:51.968 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29125 811
17-03-17 21:09:52.118 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:09:52.158 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:09:52.158 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 21:09:52.158 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:52.158 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 21:09:52.158 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:09:52.158 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:52.158 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:09:52.158 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:09:52.158 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:09:52.168 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:09:52.328 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:09:52.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:09:52.328 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:52.328 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:09:52.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:09:52.328 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:52.328 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:52.328 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:09:52.338 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:52.338 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:09:52.518 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-17 21:09:52.518 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:09:52.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 29125 150' command took 2 ms to send, 1362 ms to get response, and 1366 ms overall
17-03-17 21:09:52.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:09:52.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.132522930868339. ------
17-03-17 21:09:52.518 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:52.518 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13903 mm
17-03-17 21:09:52.518 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:09:52.528 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:52.528 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:09:52.528 -07 000000541 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 21:09:52.528 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:09:52.528 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30371, sync = True, waitForSettling = False)
17-03-17 21:09:52.528 -07 000000429 INF: Z Motor: Moving to -0.139030 mm, started at -0.132523 mm, distance = -6.51 um
17-03-17 21:09:52.528 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:52.528 -07 000000459 INF: FPGA: Recv YRDPOS 129484
17-03-17 21:09:52.538 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:09:52.538 -07 000000541 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:09:52.538 -07 000000541 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:52.538 -07 000000541 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:09:52.538 -07 000000541 INF: Y Motor: Moving 1341 steps-17
17-03-17 21:09:52.548 -07 000000429 INF: FPGA: Xmit ZDACW 30371\n [Z Motor]
17-03-17 21:09:52.548 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:09:52.558 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:09:52.558 -07 000000429 INF: FPGA: 'ZDACW 30371' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:09:52.568 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:52.568 -07 000000569 INF: FPGA: Recv ZDACR 30371
17-03-17 21:09:52.578 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:09:52.578 -07 000000429 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:09:52.718 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:09:52.718 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:09:52.718 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:52.728 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:09:52.728 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:09:52.738 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:09:52.738 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-17 21:09:52.838 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 507 ms.
17-03-17 21:09:52.838 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-17 21:09:52.838 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:52.848 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:09:52.848 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-17 21:09:52.938 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:09:52.938 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 397 ms overall
17-03-17 21:09:52.968 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:52.978 -07 000000569 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:09:52.978 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:09:52.978 -07 000000541 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:52.978 -07 000000541 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 21:09:52.978 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.112 mm/sec
17-03-17 21:09:53.928 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:53.928 -07 000000431 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:09:53.938 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:53.938 -07 000000541 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:53.958 -07 000000541 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:09:53.958 -07 000000541 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:09:53.958 -07 000000541 INF: Y Motor: Moved to 64.0571 after 1429 ms (table move)
17-03-17 21:09:53.958 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139030 mm (DAC = 30371)
17-03-17 21:09:53.958 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:53.958 -07 000000382 INF: FPGA: Recv ZSGSRD 30934
17-03-17 21:09:53.968 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:09:53.968 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:53.968 -07 000000429 INF: FPGA: Recv ZSGSRD 30923
17-03-17 21:09:53.978 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:53.978 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:53.978 -07 000000501 INF: FPGA: Recv ZSGSRD 30929
17-03-17 21:09:53.988 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:53.988 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:53.988 -07 000000501 INF: FPGA: Recv ZSGSRD 30926
17-03-17 21:09:53.998 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:53.998 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:53.998 -07 000000501 INF: FPGA: Recv ZSGSRD 30930
17-03-17 21:09:54.008 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:54.008 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:54.008 -07 000000501 INF: FPGA: Recv ZSGSRD 30936
17-03-17 21:09:54.018 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:54.018 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:54.018 -07 000000501 INF: FPGA: Recv ZSGSRD 30931
17-03-17 21:09:54.028 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:54.028 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:54.028 -07 000000431 INF: FPGA: Recv ZSGSRD 30937
17-03-17 21:09:54.038 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:54.038 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:54.038 -07 000000438 INF: FPGA: Recv ZSGSRD 30936
17-03-17 21:09:54.048 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:54.048 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:54.048 -07 000000501 INF: FPGA: Recv ZSGSRD 30927
17-03-17 21:09:54.058 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:54.058 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:54.058 -07 000000501 INF: FPGA: Recv ZPIEZORD 27027
17-03-17 21:09:54.068 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:54.068 -07 000000576 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.634 V. Piezo Error = -8.6 V.
17-03-17 21:09:54.068 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30931 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30930 (-138.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30923 (-138.2 uncal um), Max = 30937 (-138.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:09:54.068 -07 000000576 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30931, posNoise = 6, negNoise = 8
17-03-17 21:09:54.068 -07 000000576 INF: Z Motor: After move to -0.139030, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:54.068 -07 000000576 INF: Z Motor: Settle wait time = 1432 ms, measure time = 105 ms (allowed 150 ms), total time = 1537 ms
17-03-17 21:09:54.068 -07 000000576 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:09:54.118 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 21:09:54.118 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:09:54.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:54.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:54.128 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:54.128 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:54.128 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:09:54.128 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:54.128 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:09:54.128 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:09:54.128 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:09:54.128 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:09:54.138 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 21:09:54.138 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:09:54.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:09:54.188 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:09:54.388 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:09:54.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:09:54.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:09:54.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:09:54.428 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:09:54.428 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 21:09:54.428 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 21:09:54.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 21:09:54.508 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:54.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:09:54.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 21:09:54.528 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.989471,
17-03-17 21:09:54.528 -07 000000382 INF: Autofocus start
17-03-17 21:09:54.528 -07 000000382 INF: MeasureProfile start
17-03-17 21:09:54.538 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:54.538 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:54.538 -07 000000382 INF: MeasureProfile done
17-03-17 21:09:54.538 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:09:54.538 -07 000000382 INF: Autofocus finished
17-03-17 21:09:54.548 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:09:54.568 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:09:54.768 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:09:54.768 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 21:09:54.768 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.139030657767943. ----------
17-03-17 21:09:54.768 -07 000000610 INF: Cycle	47	Tile	6	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:09:54.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28878, sync = True, waitForSettling = True)
17-03-17 21:09:54.768 -07 000000610 INF: Z Motor: Moving to -0.132195 mm, started at -0.139031 mm, distance = 6.84 um
17-03-17 21:09:54.768 -07 000000610 INF: FPGA: Xmit ZDACW 28878\n [Z Motor]
17-03-17 21:09:54.778 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:09:54.788 -07 000000610 INF: FPGA: 'ZDACW 28878' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:54.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:54.788 -07 000000501 INF: FPGA: Recv ZDACR 28878
17-03-17 21:09:54.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:54.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:09:54.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:54.948 -07 000000569 INF: FPGA: Recv ZSGSRD 29866
17-03-17 21:09:54.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:54.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:54.958 -07 000000459 INF: FPGA: Recv ZSGSRD 29870
17-03-17 21:09:54.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:54.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:54.968 -07 000000431 INF: FPGA: Recv ZSGSRD 29872
17-03-17 21:09:54.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:54.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:54.978 -07 000000415 INF: FPGA: Recv ZSGSRD 29870
17-03-17 21:09:54.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:54.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:54.988 -07 000000569 INF: FPGA: Recv ZSGSRD 29870
17-03-17 21:09:54.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:09:54.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:54.998 -07 000000576 INF: FPGA: Recv ZSGSRD 29868
17-03-17 21:09:55.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:55.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:55.008 -07 000000459 INF: FPGA: Recv ZSGSRD 29871
17-03-17 21:09:55.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:55.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:55.018 -07 000000501 INF: FPGA: Recv ZSGSRD 29868
17-03-17 21:09:55.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:55.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:55.028 -07 000000459 INF: FPGA: Recv ZSGSRD 29870
17-03-17 21:09:55.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:55.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:55.038 -07 000000626 INF: FPGA: Recv ZSGSRD 29867
17-03-17 21:09:55.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:55.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:55.048 -07 000000569 INF: FPGA: Recv ZPIEZORD 25639
17-03-17 21:09:55.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:55.058 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.407 V. Piezo Error = -9.3 V.
17-03-17 21:09:55.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29869 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29870 (-131.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29866 (-131.4 uncal um), Max = 29872 (-131.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:09:55.058 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29869, posNoise = 3, negNoise = 3
17-03-17 21:09:55.058 -07 000000610 INF: Z Motor: After move to -0.132195, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:55.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:09:55.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:55.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:55.058 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:55.058 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:55.058 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:09:55.058 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:09:55.058 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:09:55.058 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:55.058 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:09:55.058 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:09:55.058 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:09:55.058 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:09:55.058 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:09:55.058 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:09:55.058 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:09:55.058 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:09:55.068 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:09:55.068 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:09:55.068 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:09:55.068 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:09:55.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 29055 150\n [Camera]
17-03-17 21:09:55.278 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:09:55.708 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:09:55.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:09:55.708 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:55.708 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:09:55.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:09:55.708 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:55.708 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:55.708 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 21:09:55.708 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:55.708 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:09:55.898 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29055 811
17-03-17 21:09:56.048 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:09:56.108 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:09:56.108 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:09:56.108 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:56.108 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 21:09:56.108 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:09:56.108 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:56.108 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:56.108 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:09:56.108 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:56.118 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 21:09:56.248 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:09:56.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:09:56.248 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:56.258 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:09:56.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:09:56.258 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:56.258 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:56.258 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 21:09:56.258 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:56.258 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 21:09:56.438 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:09:56.448 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:09:56.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 29055 150' command took 2 ms to send, 1362 ms to get response, and 1369 ms overall
17-03-17 21:09:56.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:09:56.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.132208144473393. ------
17-03-17 21:09:56.448 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:56.448 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13888 mm
17-03-17 21:09:56.448 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:09:56.458 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:09:56.458 -07 000000459 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 21:09:56.458 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:56.458 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:56.458 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:09:56.458 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30338, sync = True, waitForSettling = False)
17-03-17 21:09:56.458 -07 000000501 INF: Z Motor: Moving to -0.138878 mm, started at -0.132208 mm, distance = -6.67 um
17-03-17 21:09:56.458 -07 000000382 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:09:56.468 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:09:56.468 -07 000000459 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:56.468 -07 000000459 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:09:56.468 -07 000000459 INF: Y Motor: Moving 1337 steps-11
17-03-17 21:09:56.468 -07 000000501 INF: FPGA: Xmit ZDACW 30338\n [Z Motor]
17-03-17 21:09:56.468 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 21:09:56.478 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:09:56.478 -07 000000501 INF: FPGA: 'ZDACW 30338' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:09:56.488 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:09:56.498 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:56.498 -07 000000012 INF: FPGA: Recv ZDACR 30338
17-03-17 21:09:56.508 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:09:56.508 -07 000000501 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:09:56.658 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:09:56.658 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:09:56.658 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:09:56.658 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:09:56.658 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:56.658 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:56.668 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:56.668 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:09:56.668 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 21:09:56.678 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 21:09:56.678 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:09:56.678 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 21:09:56.848 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:09:56.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:09:56.858 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 21:09:56.858 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 21:09:56.898 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:56.898 -07 000000547 INF: FPGA: Recv YRDPOS 132872
17-03-17 21:09:56.908 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:09:56.908 -07 000000459 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:56.908 -07 000000459 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:09:56.908 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 21:09:57.858 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:09:57.858 -07 000000382 INF: FPGA: Recv YRDPOS 132872
17-03-17 21:09:57.868 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:57.868 -07 000000459 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:09:57.888 -07 000000459 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:09:57.888 -07 000000459 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:09:57.888 -07 000000459 INF: Y Motor: Moved to 64.8789 after 1431 ms (table move)
17-03-17 21:09:57.888 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138878 mm (DAC = 30338)
17-03-17 21:09:57.888 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:57.898 -07 000000547 INF: FPGA: Recv ZSGSRD 30915
17-03-17 21:09:57.898 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:09:57.898 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:57.898 -07 000000626 INF: FPGA: Recv ZSGSRD 30901
17-03-17 21:09:57.908 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:57.908 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:57.908 -07 000000626 INF: FPGA: Recv ZSGSRD 30905
17-03-17 21:09:57.918 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:57.918 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:57.918 -07 000000547 INF: FPGA: Recv ZSGSRD 30913
17-03-17 21:09:57.928 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:57.928 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:57.928 -07 000000547 INF: FPGA: Recv ZSGSRD 30909
17-03-17 21:09:57.938 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:57.938 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:57.938 -07 000000626 INF: FPGA: Recv ZSGSRD 30911
17-03-17 21:09:57.948 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:57.948 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:57.948 -07 000000626 INF: FPGA: Recv ZSGSRD 30914
17-03-17 21:09:57.958 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:57.958 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:57.958 -07 000000547 INF: FPGA: Recv ZSGSRD 30903
17-03-17 21:09:57.968 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:57.968 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:57.968 -07 000000626 INF: FPGA: Recv ZSGSRD 30905
17-03-17 21:09:57.978 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:57.978 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:57.978 -07 000000626 INF: FPGA: Recv ZSGSRD 30902
17-03-17 21:09:57.988 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:57.988 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:57.988 -07 000000382 INF: FPGA: Recv ZPIEZORD 26966
17-03-17 21:09:57.998 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:57.998 -07 000000415 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -8.7 V.
17-03-17 21:09:57.998 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30908 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30907 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30901 (-138.0 uncal um), Max = 30915 (-138.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:09:57.998 -07 000000415 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30908, posNoise = 7, negNoise = 7
17-03-17 21:09:57.998 -07 000000415 INF: Z Motor: After move to -0.138878, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:57.998 -07 000000415 INF: Z Motor: Settle wait time = 1435 ms, measure time = 103 ms (allowed 150 ms), total time = 1538 ms
17-03-17 21:09:57.998 -07 000000415 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:09:58.048 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 21:09:58.048 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:09:58.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:58.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:58.048 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:58.048 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:58.048 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:09:58.048 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:58.048 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:09:58.048 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:09:58.058 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:09:58.058 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:09:58.068 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:09:58.068 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:09:58.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:09:58.118 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:09:58.318 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:09:58.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:09:58.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:09:58.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 21:09:58.358 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:09:58.358 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 21:09:58.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 21:09:58.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 21:09:58.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:58.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:09:58.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 21:09:58.458 -07 000000547 INF: Autofocus start
17-03-17 21:09:58.458 -07 000000547 INF: MeasureProfile start
17-03-17 21:09:58.458 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:09:58.458 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:09:58.468 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:09:58.468 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:09:58.468 -07 000000547 INF: MeasureProfile done
17-03-17 21:09:58.468 -07 000000547 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 21:09:58.468 -07 000000547 INF: Autofocus finished
17-03-17 21:09:58.668 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:09:58.668 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:09:58.668 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.138882900888683. ----------
17-03-17 21:09:58.678 -07 000000610 INF: Cycle	47	Tile	7	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:09:58.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28833, sync = True, waitForSettling = True)
17-03-17 21:09:58.678 -07 000000610 INF: Z Motor: Moving to -0.131989 mm, started at -0.138883 mm, distance = 6.89 um
17-03-17 21:09:58.678 -07 000000610 INF: FPGA: Xmit ZDACW 28833\n [Z Motor]
17-03-17 21:09:58.678 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:09:58.688 -07 000000610 INF: FPGA: 'ZDACW 28833' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:09:58.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:09:58.688 -07 000000431 INF: FPGA: Recv ZDACR 28833
17-03-17 21:09:58.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:58.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:09:58.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:58.848 -07 000000431 INF: FPGA: Recv ZSGSRD 29837
17-03-17 21:09:58.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:09:58.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:58.858 -07 000000431 INF: FPGA: Recv ZSGSRD 29834
17-03-17 21:09:58.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:58.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:58.868 -07 000000431 INF: FPGA: Recv ZSGSRD 29836
17-03-17 21:09:58.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:58.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:58.878 -07 000000431 INF: FPGA: Recv ZSGSRD 29831
17-03-17 21:09:58.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:58.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:58.888 -07 000000431 INF: FPGA: Recv ZSGSRD 29833
17-03-17 21:09:58.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:58.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:58.898 -07 000000459 INF: FPGA: Recv ZSGSRD 29840
17-03-17 21:09:58.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:58.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:58.908 -07 000000459 INF: FPGA: Recv ZSGSRD 29834
17-03-17 21:09:58.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:58.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:58.918 -07 000000459 INF: FPGA: Recv ZSGSRD 29837
17-03-17 21:09:58.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:58.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:58.928 -07 000000012 INF: FPGA: Recv ZSGSRD 29833
17-03-17 21:09:58.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:58.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:09:58.938 -07 000000431 INF: FPGA: Recv ZSGSRD 29834
17-03-17 21:09:58.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:58.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:09:58.948 -07 000000382 INF: FPGA: Recv ZPIEZORD 25583
17-03-17 21:09:58.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:09:58.958 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.400 V. Piezo Error = -9.3 V.
17-03-17 21:09:58.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29835 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29834 (-131.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29831 (-131.2 uncal um), Max = 29840 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:09:58.958 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29835, posNoise = 5, negNoise = 4
17-03-17 21:09:58.958 -07 000000610 INF: Z Motor: After move to -0.131989, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:09:58.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:09:58.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:09:58.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:09:58.958 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:09:58.958 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:09:58.958 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:09:58.958 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:09:58.958 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:09:58.958 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:09:58.958 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:09:58.958 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:09:58.958 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:09:58.958 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:09:58.968 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:09:58.968 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:09:58.968 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:09:58.968 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:09:58.978 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:09:58.978 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:09:58.978 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:09:58.978 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:09:58.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 29010 150\n [Camera]
17-03-17 21:09:59.178 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:09:59.608 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:09:59.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:09:59.608 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:09:59.608 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:09:59.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:09:59.608 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:09:59.608 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:09:59.608 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-17 21:09:59.618 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:09:59.618 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) start.
17-03-17 21:09:59.798 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29010 811
17-03-17 21:09:59.908 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.98264,
17-03-17 21:09:59.958 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:09:59.988 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:09:59.988 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 21:09:59.988 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:59.988 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:09:59.988 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:09:59.988 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:09:59.988 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:09:59.988 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:09:59.988 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:09:59.998 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:10:00.148 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:10:00.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:10:00.148 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:00.148 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:00.158 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:10:00.158 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:10:00.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:10:00.158 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:00.158 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:00.158 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1054871600, 0x0, 418435064) start.
17-03-17 21:10:00.348 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:10:00.348 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:10:00.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 29010 150' command took 2 ms to send, 1363 ms to get response, and 1370 ms overall
17-03-17 21:10:00.348 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:10:00.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131989721260573. ------
17-03-17 21:10:00.348 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13858 mm
17-03-17 21:10:00.348 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:10:00.348 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:00.458 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:00.458 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 111 ms overall
17-03-17 21:10:00.458 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:10:00.468 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:10:00.468 -07 000000547 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 21:10:00.468 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:00.468 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30272, sync = True, waitForSettling = False)
17-03-17 21:10:00.468 -07 000000626 INF: Z Motor: Moving to -0.138576 mm, started at -0.131990 mm, distance = -6.59 um
17-03-17 21:10:00.468 -07 000000627 INF: FPGA: Recv YRDPOS 132873
17-03-17 21:10:00.478 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:00.478 -07 000000547 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:00.478 -07 000000626 INF: FPGA: Xmit ZDACW 30272\n [Z Motor]
17-03-17 21:10:00.478 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:10:00.478 -07 000000547 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:10:00.478 -07 000000547 INF: Y Motor: Moving 1349 steps-28
17-03-17 21:10:00.488 -07 000000626 INF: FPGA: 'ZDACW 30272' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:10:00.488 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:00.488 -07 000000480 INF: FPGA: Recv ZDACR 30272
17-03-17 21:10:00.498 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:10:00.498 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:00.498 -07 000000626 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 21:10:00.538 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 21:10:00.538 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:10:00.538 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:00.538 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1054871600, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 21:10:00.538 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:10:00.538 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:00.548 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:10:00.548 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:10:00.548 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:10:00.548 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:10:00.668 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:10:00.668 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 202 ms overall
17-03-17 21:10:00.868 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 21:10:00.868 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 21:10:00.908 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:00.908 -07 000000415 INF: FPGA: Recv YRDPOS 134583
17-03-17 21:10:00.918 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:10:00.918 -07 000000547 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:00.918 -07 000000547 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 21:10:00.918 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-17 21:10:01.848 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:10:01.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:10:01.868 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:01.868 -07 000000459 INF: FPGA: Recv YRDPOS 134583
17-03-17 21:10:01.878 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:01.878 -07 000000547 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:01.908 -07 000000547 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:10:01.908 -07 000000547 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:10:01.908 -07 000000547 INF: Y Motor: Moved to 65.7144 after 1441 ms (table move)
17-03-17 21:10:01.908 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138576 mm (DAC = 30272)
17-03-17 21:10:01.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:01.908 -07 000000480 INF: FPGA: Recv ZSGSRD 30859
17-03-17 21:10:01.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:10:01.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:01.918 -07 000000576 INF: FPGA: Recv ZSGSRD 30866
17-03-17 21:10:01.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:01.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:01.928 -07 000000626 INF: FPGA: Recv ZSGSRD 30865
17-03-17 21:10:01.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:01.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:01.938 -07 000000576 INF: FPGA: Recv ZSGSRD 30862
17-03-17 21:10:01.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:01.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:01.948 -07 000000480 INF: FPGA: Recv ZSGSRD 30858
17-03-17 21:10:01.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:01.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:01.958 -07 000000626 INF: FPGA: Recv ZSGSRD 30860
17-03-17 21:10:01.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:01.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:01.968 -07 000000480 INF: FPGA: Recv ZSGSRD 30866
17-03-17 21:10:01.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:01.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:01.978 -07 000000576 INF: FPGA: Recv ZSGSRD 30855
17-03-17 21:10:01.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:01.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:01.988 -07 000000576 INF: FPGA: Recv ZSGSRD 30860
17-03-17 21:10:01.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:01.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:01.998 -07 000000576 INF: FPGA: Recv ZSGSRD 30866
17-03-17 21:10:02.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:02.008 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:02.008 -07 000000576 INF: FPGA: Recv ZPIEZORD 26925
17-03-17 21:10:02.018 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:02.018 -07 000000431 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.619 V. Piezo Error = -8.7 V.
17-03-17 21:10:02.018 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30862 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30861 (-137.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30855 (-137.7 uncal um), Max = 30866 (-137.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:10:02.018 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30862, posNoise = 4, negNoise = 7
17-03-17 21:10:02.018 -07 000000431 INF: Z Motor: After move to -0.138576, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:02.018 -07 000000431 INF: Z Motor: Settle wait time = 1445 ms, measure time = 104 ms (allowed 150 ms), total time = 1549 ms
17-03-17 21:10:02.018 -07 000000431 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:10:02.068 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1712 ms
17-03-17 21:10:02.068 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:10:02.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:02.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:02.068 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:02.068 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:02.068 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:10:02.068 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:02.068 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:10:02.068 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:10:02.078 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:10:02.078 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:10:02.078 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:10:02.078 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:10:02.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:10:02.128 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:10:02.328 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:10:02.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:10:02.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:10:02.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:10:02.368 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:10:02.368 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:10:02.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 21:10:02.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:10:02.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:02.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:10:02.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:10:02.468 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:02.468 -07 000000431 INF: Autofocus start
17-03-17 21:10:02.468 -07 000000431 INF: MeasureProfile start
17-03-17 21:10:02.468 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:02.478 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:10:02.478 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:10:02.478 -07 000000431 INF: MeasureProfile done
17-03-17 21:10:02.478 -07 000000431 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:10:02.478 -07 000000431 INF: Autofocus finished
17-03-17 21:10:02.678 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:10:02.678 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:10:02.688 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138587387130162. ----------
17-03-17 21:10:02.688 -07 000000610 INF: Cycle	47	Tile	8	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:10:02.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28779, sync = True, waitForSettling = True)
17-03-17 21:10:02.688 -07 000000610 INF: Z Motor: Moving to -0.131742 mm, started at -0.138587 mm, distance = 6.85 um
17-03-17 21:10:02.688 -07 000000610 INF: FPGA: Xmit ZDACW 28779\n [Z Motor]
17-03-17 21:10:02.688 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:10:02.698 -07 000000610 INF: FPGA: 'ZDACW 28779' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:10:02.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:02.698 -07 000000429 INF: FPGA: Recv ZDACR 28779
17-03-17 21:10:02.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:02.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:10:02.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:02.858 -07 000000459 INF: FPGA: Recv ZSGSRD 29801
17-03-17 21:10:02.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:02.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:02.868 -07 000000626 INF: FPGA: Recv ZSGSRD 29797
17-03-17 21:10:02.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:02.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:02.878 -07 000000429 INF: FPGA: Recv ZSGSRD 29796
17-03-17 21:10:02.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:02.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:02.888 -07 000000459 INF: FPGA: Recv ZSGSRD 29798
17-03-17 21:10:02.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:02.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:02.898 -07 000000626 INF: FPGA: Recv ZSGSRD 29790
17-03-17 21:10:02.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:02.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:02.908 -07 000000429 INF: FPGA: Recv ZSGSRD 29801
17-03-17 21:10:02.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:02.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:02.918 -07 000000626 INF: FPGA: Recv ZSGSRD 29804
17-03-17 21:10:02.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:02.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:02.928 -07 000000569 INF: FPGA: Recv ZSGSRD 29802
17-03-17 21:10:02.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:02.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:02.938 -07 000000459 INF: FPGA: Recv ZSGSRD 29794
17-03-17 21:10:02.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:02.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:02.948 -07 000000569 INF: FPGA: Recv ZSGSRD 29793
17-03-17 21:10:02.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:02.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:02.958 -07 000000576 INF: FPGA: Recv ZPIEZORD 25518
17-03-17 21:10:02.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:02.968 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.391 V. Piezo Error = -9.4 V.
17-03-17 21:10:02.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29798 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29798 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29790 (-130.9 uncal um), Max = 29804 (-131.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:10:02.968 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29798, posNoise = 6, negNoise = 8
17-03-17 21:10:02.968 -07 000000610 INF: Z Motor: After move to -0.131742, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:02.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:10:02.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:02.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:02.968 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:02.968 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:10:02.968 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:10:02.968 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:10:02.968 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:02.968 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:02.968 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:10:02.968 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:10:02.968 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:10:02.968 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:10:02.978 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:10:02.978 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:10:02.978 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:10:02.978 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:10:02.988 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:10:02.988 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:10:02.988 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:10:02.988 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:10:02.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28956 150\n [Camera]
17-03-17 21:10:03.188 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:10:03.618 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:10:03.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:10:03.618 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:03.618 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:10:03.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:10:03.628 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:03.628 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:03.628 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 21:10:03.628 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:03.628 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:10:03.808 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28956 811
17-03-17 21:10:03.958 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:10:04.018 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:10:04.018 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:10:04.018 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:04.018 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 21:10:04.018 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:10:04.018 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:04.018 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:04.018 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:10:04.028 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:04.028 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 21:10:04.168 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:10:04.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:10:04.168 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:04.168 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:10:04.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:10:04.168 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:04.178 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:04.178 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:10:04.178 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:04.178 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:10:04.358 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-17 21:10:04.358 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:10:04.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28956 150' command took 2 ms to send, 1355 ms to get response, and 1365 ms overall
17-03-17 21:10:04.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:10:04.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131752025411328. ------
17-03-17 21:10:04.368 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:04.368 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13812 mm
17-03-17 21:10:04.368 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:10:04.478 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:04.478 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-17 21:10:04.478 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:10:04.488 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 30171, sync = True, waitForSettling = False)
17-03-17 21:10:04.488 -07 000000431 INF: Z Motor: Moving to -0.138114 mm, started at -0.131752 mm, distance = -6.36 um
17-03-17 21:10:04.488 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:10:04.488 -07 000000438 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 21:10:04.488 -07 000000431 INF: FPGA: Xmit ZDACW 30171\n [Z Motor]
17-03-17 21:10:04.488 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 21:10:04.498 -07 000000431 INF: FPGA: 'ZDACW 30171' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:04.498 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:04.508 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:04.568 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:10:04.568 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:10:04.568 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:04.568 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 21:10:04.568 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:10:04.568 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:04.578 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:04.578 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:10:04.578 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:04.588 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:10:04.588 -07 000000480 INF: FPGA: Recv ZDACR 30171
17-03-17 21:10:04.588 -07 000000480 INF: FPGA: Recv YRDPOS 134583
17-03-17 21:10:04.588 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 73 ms to get response, and 102 ms overall
17-03-17 21:10:04.588 -07 000000438 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:04.588 -07 000000438 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:10:04.588 -07 000000438 INF: Y Motor: Moving 1341 steps-17
17-03-17 21:10:04.588 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:10:04.588 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 83 ms to get response, and 93 ms overall
17-03-17 21:10:04.588 -07 000000431 INF: Z Motor: MoveAbsStepped took 103 ms (did NOT wait for settling yet))
17-03-17 21:10:04.688 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:10:04.688 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 203 ms overall
17-03-17 21:10:04.968 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 21:10:04.968 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 378 ms overall
17-03-17 21:10:04.998 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:05.008 -07 000000569 INF: FPGA: Recv YRDPOS 136272
17-03-17 21:10:05.008 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:10:05.008 -07 000000438 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:05.008 -07 000000438 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:10:05.008 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.218 mm/sec
17-03-17 21:10:05.268 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.003063,
17-03-17 21:10:05.958 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:05.958 -07 000000569 INF: FPGA: Recv YRDPOS 136273
17-03-17 21:10:05.968 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:05.968 -07 000000438 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:05.988 -07 000000438 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:10:05.988 -07 000000438 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:10:05.988 -07 000000438 INF: Y Motor: Moved to 66.5396 after 1503 ms (table move)
17-03-17 21:10:05.988 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138114 mm (DAC = 30171)
17-03-17 21:10:05.988 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:05.998 -07 000000480 INF: FPGA: Recv ZSGSRD 30786
17-03-17 21:10:05.998 -07 000000627 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 21:10:05.998 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:05.998 -07 000000476 INF: FPGA: Recv ZSGSRD 30793
17-03-17 21:10:06.008 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:10:06.008 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:06.008 -07 000000438 INF: FPGA: Recv ZSGSRD 30783
17-03-17 21:10:06.018 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:06.018 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:06.018 -07 000000569 INF: FPGA: Recv ZSGSRD 30787
17-03-17 21:10:06.028 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:06.028 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:06.028 -07 000000431 INF: FPGA: Recv ZSGSRD 30786
17-03-17 21:10:06.038 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:06.038 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:06.038 -07 000000476 INF: FPGA: Recv ZSGSRD 30800
17-03-17 21:10:06.048 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:06.048 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:06.048 -07 000000438 INF: FPGA: Recv ZSGSRD 30786
17-03-17 21:10:06.058 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:06.058 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:06.058 -07 000000438 INF: FPGA: Recv ZSGSRD 30789
17-03-17 21:10:06.068 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:06.068 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:06.068 -07 000000476 INF: FPGA: Recv ZSGSRD 30785
17-03-17 21:10:06.078 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:06.078 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:06.078 -07 000000480 INF: FPGA: Recv ZSGSRD 30786
17-03-17 21:10:06.088 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:06.088 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:06.088 -07 000000480 INF: FPGA: Recv ZPIEZORD 26820
17-03-17 21:10:06.098 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:06.098 -07 000000627 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.604 V. Piezo Error = -8.7 V.
17-03-17 21:10:06.098 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30788 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30786 (-137.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30783 (-137.3 uncal um), Max = 30800 (-137.4 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:10:06.098 -07 000000627 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30788, posNoise = 12, negNoise = 5
17-03-17 21:10:06.098 -07 000000627 INF: Z Motor: After move to -0.138114, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:06.098 -07 000000627 INF: Z Motor: Settle wait time = 1506 ms, measure time = 104 ms (allowed 150 ms), total time = 1610 ms
17-03-17 21:10:06.098 -07 000000627 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:10:06.148 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1778 ms
17-03-17 21:10:06.148 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:10:06.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:06.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:06.148 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:06.148 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:06.148 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:10:06.148 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:06.148 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:10:06.148 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:10:06.158 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:10:06.158 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:10:06.168 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:10:06.168 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:10:06.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:10:06.218 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:10:06.418 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:10:06.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:10:06.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:10:06.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:10:06.458 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:10:06.458 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 21:10:06.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 21:10:06.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 21:10:06.538 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:06.538 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:10:06.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 21:10:06.558 -07 000000433 INF: Autofocus start
17-03-17 21:10:06.558 -07 000000433 INF: MeasureProfile start
17-03-17 21:10:06.558 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:06.558 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:06.568 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:10:06.568 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:10:06.568 -07 000000433 INF: MeasureProfile done
17-03-17 21:10:06.568 -07 000000433 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:10:06.568 -07 000000433 INF: Autofocus finished
17-03-17 21:10:06.768 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:10:06.768 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:10:06.768 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.138111995431671. ----------
17-03-17 21:10:06.778 -07 000000610 INF: Cycle	47	Tile	9	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:10:06.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28679, sync = True, waitForSettling = True)
17-03-17 21:10:06.778 -07 000000610 INF: Z Motor: Moving to -0.131284 mm, started at -0.138112 mm, distance = 6.83 um
17-03-17 21:10:06.778 -07 000000610 INF: FPGA: Xmit ZDACW 28679\n [Z Motor]
17-03-17 21:10:06.778 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 21:10:06.788 -07 000000610 INF: FPGA: 'ZDACW 28679' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:10:06.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:06.788 -07 000000480 INF: FPGA: Recv ZDACR 28679
17-03-17 21:10:06.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:06.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:10:06.848 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:10:06.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:10:06.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:06.948 -07 000000012 INF: FPGA: Recv ZSGSRD 29715
17-03-17 21:10:06.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:06.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:06.958 -07 000000012 INF: FPGA: Recv ZSGSRD 29720
17-03-17 21:10:06.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:06.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:06.968 -07 000000382 INF: FPGA: Recv ZSGSRD 29729
17-03-17 21:10:06.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:06.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:06.978 -07 000000431 INF: FPGA: Recv ZSGSRD 29725
17-03-17 21:10:06.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:06.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:06.988 -07 000000438 INF: FPGA: Recv ZSGSRD 29727
17-03-17 21:10:06.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:06.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:06.998 -07 000000012 INF: FPGA: Recv ZSGSRD 29723
17-03-17 21:10:07.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:07.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:07.008 -07 000000433 INF: FPGA: Recv ZSGSRD 29732
17-03-17 21:10:07.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:07.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:07.018 -07 000000569 INF: FPGA: Recv ZSGSRD 29726
17-03-17 21:10:07.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:07.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:07.028 -07 000000476 INF: FPGA: Recv ZSGSRD 29718
17-03-17 21:10:07.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:07.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:07.038 -07 000000627 INF: FPGA: Recv ZSGSRD 29727
17-03-17 21:10:07.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:07.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:07.048 -07 000000431 INF: FPGA: Recv ZPIEZORD 25437
17-03-17 21:10:07.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:07.058 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.376 V. Piezo Error = -9.4 V.
17-03-17 21:10:07.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29724 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29726 (-130.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29715 (-130.4 uncal um), Max = 29732 (-130.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:10:07.058 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29724, posNoise = 8, negNoise = 9
17-03-17 21:10:07.058 -07 000000610 INF: Z Motor: After move to -0.131284, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:07.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:10:07.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:07.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:07.058 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:07.058 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:07.058 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:10:07.058 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:10:07.058 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:10:07.058 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:07.058 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:10:07.058 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:10:07.058 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:10:07.058 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:10:07.068 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:10:07.068 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:10:07.068 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:10:07.068 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:10:07.068 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:10:07.078 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:10:07.078 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:10:07.078 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:10:07.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28855 150\n [Camera]
17-03-17 21:10:07.278 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:10:07.698 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:10:07.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:10:07.708 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:07.708 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:10:07.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:10:07.708 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:07.708 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:07.708 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 21:10:07.708 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:07.708 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:10:07.898 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28855 811
17-03-17 21:10:08.048 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:10:08.078 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 21:10:08.078 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 21:10:08.078 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:08.078 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:10:08.088 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:10:08.088 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:08.088 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:08.088 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:10:08.088 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:08.098 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:10:08.248 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1167
17-03-17 21:10:08.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1167
17-03-17 21:10:08.248 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:08.258 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1167
17-03-17 21:10:08.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1167
17-03-17 21:10:08.258 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:08.258 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:08.258 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 21:10:08.258 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:08.258 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 21:10:08.438 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-17 21:10:08.438 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:10:08.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28855 150' command took 2 ms to send, 1358 ms to get response, and 1365 ms overall
17-03-17 21:10:08.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:10:08.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.131276633712838. ------
17-03-17 21:10:08.448 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:08.448 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13802 mm
17-03-17 21:10:08.448 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:10:08.448 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:10:08.448 -07 000000476 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 21:10:08.448 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 30151, sync = True, waitForSettling = False)
17-03-17 21:10:08.448 -07 000000433 INF: Z Motor: Moving to -0.138022 mm, started at -0.131277 mm, distance = -6.75 um
17-03-17 21:10:08.448 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:08.458 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:10:08.458 -07 000000433 INF: FPGA: Xmit ZDACW 30151\n [Z Motor]
17-03-17 21:10:08.458 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:10:08.468 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:08.468 -07 000000433 INF: FPGA: 'ZDACW 30151' command took 2 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:10:08.468 -07 000000627 INF: FPGA: Recv YRDPOS 136273
17-03-17 21:10:08.478 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:10:08.478 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:10:08.478 -07 000000476 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:08.478 -07 000000476 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:10:08.478 -07 000000476 INF: Y Motor: Moving 1349 steps-28
17-03-17 21:10:08.488 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:08.488 -07 000000618 INF: FPGA: Recv ZDACR 30151
17-03-17 21:10:08.498 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:10:08.498 -07 000000433 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 21:10:08.498 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:10:08.648 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 21:10:08.648 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:10:08.648 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:08.648 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 21:10:08.648 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:10:08.648 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:08.658 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:08.658 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:08.658 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:10:08.658 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 21:10:08.678 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:10:08.678 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 21:10:08.868 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 21:10:08.868 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:10:08.908 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:08.908 -07 000000012 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:10:08.918 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:10:08.918 -07 000000476 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:08.918 -07 000000476 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 21:10:08.918 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.118 mm/sec
17-03-17 21:10:09.868 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:09.868 -07 000000480 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:10:09.878 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:09.878 -07 000000476 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:09.898 -07 000000476 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:10:09.898 -07 000000476 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:10:09.898 -07 000000476 INF: Y Motor: Moved to 67.3721 after 1448 ms (table move)
17-03-17 21:10:09.898 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138022 mm (DAC = 30151)
17-03-17 21:10:09.898 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:09.908 -07 000000415 INF: FPGA: Recv ZSGSRD 30783
17-03-17 21:10:09.908 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:10:09.908 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:09.908 -07 000000382 INF: FPGA: Recv ZSGSRD 30769
17-03-17 21:10:09.918 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:09.918 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:09.918 -07 000000382 INF: FPGA: Recv ZSGSRD 30774
17-03-17 21:10:09.928 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:09.928 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:09.928 -07 000000618 INF: FPGA: Recv ZSGSRD 30781
17-03-17 21:10:09.938 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:09.938 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:09.938 -07 000000618 INF: FPGA: Recv ZSGSRD 30775
17-03-17 21:10:09.948 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:09.948 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:09.948 -07 000000627 INF: FPGA: Recv ZSGSRD 30777
17-03-17 21:10:09.958 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:09.958 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:09.958 -07 000000618 INF: FPGA: Recv ZSGSRD 30777
17-03-17 21:10:09.968 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:09.968 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:09.968 -07 000000618 INF: FPGA: Recv ZSGSRD 30767
17-03-17 21:10:09.978 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:09.978 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:09.978 -07 000000501 INF: FPGA: Recv ZSGSRD 30776
17-03-17 21:10:09.988 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:09.988 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:09.988 -07 000000501 INF: FPGA: Recv ZSGSRD 30768
17-03-17 21:10:09.998 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:09.998 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:09.998 -07 000000501 INF: FPGA: Recv ZPIEZORD 26864
17-03-17 21:10:10.008 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:10.008 -07 000000438 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.601 V. Piezo Error = -8.6 V.
17-03-17 21:10:10.008 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30775 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30776 (-137.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30767 (-137.2 uncal um), Max = 30783 (-137.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:10:10.008 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30775, posNoise = 8, negNoise = 8
17-03-17 21:10:10.008 -07 000000438 INF: Z Motor: After move to -0.138022, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:10.008 -07 000000438 INF: Z Motor: Settle wait time = 1451 ms, measure time = 102 ms (allowed 150 ms), total time = 1553 ms
17-03-17 21:10:10.008 -07 000000438 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:10:10.058 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 21:10:10.058 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:10:10.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:10.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:10.058 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:10.058 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:10.058 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:10:10.058 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:10.058 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:10:10.058 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:10:10.068 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:10:10.068 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:10:10.068 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:10:10.068 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:10:10.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:10:10.128 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:10:10.318 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:10:10.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:10:10.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:10:10.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 21:10:10.358 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:10:10.368 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 21:10:10.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 21:10:10.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:10:10.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:10.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:10:10.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:10:10.468 -07 000000627 INF: Autofocus start
17-03-17 21:10:10.468 -07 000000627 INF: MeasureProfile start
17-03-17 21:10:10.468 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:10.468 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:10.478 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:10:10.478 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:10:10.478 -07 000000627 INF: MeasureProfile done
17-03-17 21:10:10.478 -07 000000627 INF: X=-48  Z correction [um]=-0.2370583
17-03-17 21:10:10.478 -07 000000627 INF: Autofocus finished
17-03-17 21:10:10.628 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.975845,
17-03-17 21:10:10.678 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:10:10.678 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:10:10.678 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.138028480673828. ----------
17-03-17 21:10:10.678 -07 000000610 INF: Cycle	47	Tile	10	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:10:10.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28612, sync = True, waitForSettling = True)
17-03-17 21:10:10.688 -07 000000610 INF: Z Motor: Moving to -0.130977 mm, started at -0.138028 mm, distance = 7.05 um
17-03-17 21:10:10.688 -07 000000610 INF: FPGA: Xmit ZDACW 28612\n [Z Motor]
17-03-17 21:10:10.688 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:10:10.698 -07 000000610 INF: FPGA: 'ZDACW 28612' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:10.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:10.698 -07 000000618 INF: FPGA: Recv ZDACR 28612
17-03-17 21:10:10.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:10.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:10:10.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:10.858 -07 000000626 INF: FPGA: Recv ZSGSRD 29684
17-03-17 21:10:10.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:10.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:10.868 -07 000000618 INF: FPGA: Recv ZSGSRD 29676
17-03-17 21:10:10.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:10.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:10.878 -07 000000501 INF: FPGA: Recv ZSGSRD 29673
17-03-17 21:10:10.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:10.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:10.888 -07 000000618 INF: FPGA: Recv ZSGSRD 29675
17-03-17 21:10:10.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:10.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:10.898 -07 000000627 INF: FPGA: Recv ZSGSRD 29674
17-03-17 21:10:10.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:10.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:10.908 -07 000000459 INF: FPGA: Recv ZSGSRD 29686
17-03-17 21:10:10.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:10.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:10.918 -07 000000627 INF: FPGA: Recv ZSGSRD 29676
17-03-17 21:10:10.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:10.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:10.928 -07 000000501 INF: FPGA: Recv ZSGSRD 29678
17-03-17 21:10:10.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:10.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:10.938 -07 000000626 INF: FPGA: Recv ZSGSRD 29681
17-03-17 21:10:10.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:10.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:10.948 -07 000000618 INF: FPGA: Recv ZSGSRD 29673
17-03-17 21:10:10.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:10.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:10.958 -07 000000438 INF: FPGA: Recv ZPIEZORD 25424
17-03-17 21:10:10.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:10.968 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.366 V. Piezo Error = -9.3 V.
17-03-17 21:10:10.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29678 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29676 (-130.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29673 (-130.2 uncal um), Max = 29686 (-130.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:10:10.968 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29678, posNoise = 8, negNoise = 5
17-03-17 21:10:10.968 -07 000000610 INF: Z Motor: After move to -0.130977, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:10.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:10:10.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:10.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:10.968 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:10.968 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:10:10.968 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:10:10.968 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:10:10.968 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:10.968 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:10.968 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:10:10.968 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:10:10.968 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:10:10.968 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:10:10.968 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:10:10.978 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:10:10.978 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:10:10.978 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:10:10.978 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:10:10.978 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:10:10.978 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:10:10.978 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:10:11.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28789 150\n [Camera]
17-03-17 21:10:11.198 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:10:11.628 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:10:11.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:10:11.628 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:11.628 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:10:11.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:10:11.638 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:11.638 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:11.638 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-17 21:10:11.638 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:11.638 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) start.
17-03-17 21:10:11.818 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28789 811
17-03-17 21:10:11.848 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:10:11.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:10:11.968 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:10:12.028 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 21:10:12.028 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:10:12.028 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:12.028 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 21:10:12.028 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:10:12.028 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:12.028 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:12.028 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:10:12.028 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:12.038 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:10:12.178 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:10:12.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:10:12.178 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:12.178 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:12.178 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:10:12.178 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:10:12.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:10:12.178 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:12.178 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:12.178 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1054871600, 0x0, 418435064) start.
17-03-17 21:10:12.368 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-17 21:10:12.368 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:10:12.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28789 150' command took 2 ms to send, 1356 ms to get response, and 1384 ms overall
17-03-17 21:10:12.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:10:12.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130981119954317. ------
17-03-17 21:10:12.378 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:12.378 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13748 mm
17-03-17 21:10:12.378 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:10:12.378 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30033, sync = True, waitForSettling = False)
17-03-17 21:10:12.378 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:10:12.378 -07 000000576 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 21:10:12.378 -07 000000501 INF: Z Motor: Moving to -0.137482 mm, started at -0.130981 mm, distance = -6.50 um
17-03-17 21:10:12.378 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:12.388 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:10:12.388 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:12.388 -07 000000627 INF: FPGA: Recv YRDPOS 137979
17-03-17 21:10:12.398 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:10:12.398 -07 000000576 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:12.398 -07 000000501 INF: FPGA: Xmit ZDACW 30033\n [Z Motor]
17-03-17 21:10:12.508 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:10:12.508 -07 000000501 INF: FPGA: 'ZDACW 30033' command took 1 ms to send, 0 ms to get response, and 134 ms overall
17-03-17 21:10:12.518 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:10:12.518 -07 000000576 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:10:12.518 -07 000000576 INF: Y Motor: Moving 1344 steps-22
17-03-17 21:10:12.528 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:10:12.538 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:12.538 -07 000000626 INF: FPGA: Recv ZDACR 30033
17-03-17 21:10:12.548 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:10:12.548 -07 000000501 INF: Z Motor: MoveAbsStepped took 165 ms (did NOT wait for settling yet))
17-03-17 21:10:12.578 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:10:12.578 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:10:12.578 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:12.578 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1054871600, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:10:12.578 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:10:12.578 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:12.578 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:10:12.588 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:10:12.588 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 21:10:12.588 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 21:10:12.718 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:10:12.718 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 332 ms overall
17-03-17 21:10:12.898 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 21:10:12.898 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 21:10:12.938 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:12.938 -07 000000618 INF: FPGA: Recv YRDPOS 139684
17-03-17 21:10:12.948 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:10:12.948 -07 000000576 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:12.948 -07 000000576 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 21:10:12.948 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.841 mm, average velocity = 2.178 mm/sec
17-03-17 21:10:13.898 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:13.898 -07 000000480 INF: FPGA: Recv YRDPOS 139684
17-03-17 21:10:13.908 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:13.908 -07 000000576 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:13.928 -07 000000576 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:10:13.928 -07 000000576 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:10:13.928 -07 000000576 INF: Y Motor: Moved to 68.2051 after 1546 ms (table move)
17-03-17 21:10:13.928 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137482 mm (DAC = 30033)
17-03-17 21:10:13.928 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:13.928 -07 000000438 INF: FPGA: Recv ZSGSRD 30690
17-03-17 21:10:13.938 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:10:13.938 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:13.938 -07 000000438 INF: FPGA: Recv ZSGSRD 30683
17-03-17 21:10:13.948 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:13.948 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:13.948 -07 000000438 INF: FPGA: Recv ZSGSRD 30695
17-03-17 21:10:13.958 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:13.958 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:13.958 -07 000000438 INF: FPGA: Recv ZSGSRD 30703
17-03-17 21:10:13.968 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:13.968 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:13.968 -07 000000438 INF: FPGA: Recv ZSGSRD 30692
17-03-17 21:10:13.978 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:13.978 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:13.978 -07 000000438 INF: FPGA: Recv ZSGSRD 30695
17-03-17 21:10:13.988 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:13.988 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:13.988 -07 000000438 INF: FPGA: Recv ZSGSRD 30691
17-03-17 21:10:13.998 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:13.998 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:13.998 -07 000000438 INF: FPGA: Recv ZSGSRD 30688
17-03-17 21:10:14.008 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:14.008 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:14.008 -07 000000438 INF: FPGA: Recv ZSGSRD 30690
17-03-17 21:10:14.018 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:14.018 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:14.018 -07 000000438 INF: FPGA: Recv ZSGSRD 30687
17-03-17 21:10:14.028 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:14.028 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:14.028 -07 000000438 INF: FPGA: Recv ZPIEZORD 26719
17-03-17 21:10:14.038 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:14.038 -07 000000541 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.583 V. Piezo Error = -8.7 V.
17-03-17 21:10:14.038 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30691 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30690 (-136.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30683 (-136.6 uncal um), Max = 30703 (-136.8 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:10:14.038 -07 000000541 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30691, posNoise = 12, negNoise = 8
17-03-17 21:10:14.038 -07 000000541 INF: Z Motor: After move to -0.137482, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:14.038 -07 000000541 INF: Z Motor: Settle wait time = 1549 ms, measure time = 106 ms (allowed 150 ms), total time = 1655 ms
17-03-17 21:10:14.038 -07 000000541 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 21:10:14.088 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1707 ms
17-03-17 21:10:14.088 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:10:14.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:14.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:14.088 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:14.088 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:14.088 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:10:14.088 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:14.098 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:10:14.098 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:10:14.098 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:10:14.098 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:10:14.108 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:10:14.108 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:10:14.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:10:14.158 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:10:14.358 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:10:14.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:10:14.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:10:14.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:10:14.398 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:10:14.398 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 21:10:14.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 21:10:14.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:10:14.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:14.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:10:14.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 21:10:14.598 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:14.598 -07 000000438 INF: Autofocus start
17-03-17 21:10:14.598 -07 000000438 INF: MeasureProfile start
17-03-17 21:10:14.608 -07 000000438 INF: MeasureProfile done
17-03-17 21:10:14.608 -07 000000438 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 21:10:14.608 -07 000000438 INF: Autofocus finished
17-03-17 21:10:14.608 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:14.608 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 8 ms to get response, and 14 ms overall
17-03-17 21:10:14.608 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:10:14.818 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:10:14.818 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 201 ms to get response, and 202 ms overall
17-03-17 21:10:14.818 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.137488846853921. ----------
17-03-17 21:10:14.818 -07 000000610 INF: Cycle	47	Tile	11	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:10:14.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28510, sync = True, waitForSettling = True)
17-03-17 21:10:14.818 -07 000000610 INF: Z Motor: Moving to -0.130510 mm, started at -0.137489 mm, distance = 6.98 um
17-03-17 21:10:14.818 -07 000000610 INF: FPGA: Xmit ZDACW 28510\n [Z Motor]
17-03-17 21:10:14.828 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 21:10:14.838 -07 000000610 INF: FPGA: 'ZDACW 28510' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:14.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:14.838 -07 000000438 INF: FPGA: Recv ZDACR 28510
17-03-17 21:10:14.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:14.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:10:14.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:14.998 -07 000000541 INF: FPGA: Recv ZSGSRD 29602
17-03-17 21:10:15.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:15.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:15.008 -07 000000433 INF: FPGA: Recv ZSGSRD 29611
17-03-17 21:10:15.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:15.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:15.018 -07 000000431 INF: FPGA: Recv ZSGSRD 29606
17-03-17 21:10:15.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:15.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:15.028 -07 000000431 INF: FPGA: Recv ZSGSRD 29598
17-03-17 21:10:15.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:15.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:15.038 -07 000000431 INF: FPGA: Recv ZSGSRD 29603
17-03-17 21:10:15.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:15.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:15.048 -07 000000541 INF: FPGA: Recv ZSGSRD 29601
17-03-17 21:10:15.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:15.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:15.058 -07 000000433 INF: FPGA: Recv ZSGSRD 29607
17-03-17 21:10:15.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:15.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:15.068 -07 000000431 INF: FPGA: Recv ZSGSRD 29606
17-03-17 21:10:15.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:15.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:15.078 -07 000000433 INF: FPGA: Recv ZSGSRD 29600
17-03-17 21:10:15.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:15.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:15.088 -07 000000433 INF: FPGA: Recv ZSGSRD 29606
17-03-17 21:10:15.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:15.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:15.098 -07 000000541 INF: FPGA: Recv ZPIEZORD 25305
17-03-17 21:10:15.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:15.108 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.350 V. Piezo Error = -9.4 V.
17-03-17 21:10:15.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29604 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29604 (-129.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29598 (-129.7 uncal um), Max = 29611 (-129.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:10:15.108 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29604, posNoise = 7, negNoise = 6
17-03-17 21:10:15.108 -07 000000610 INF: Z Motor: After move to -0.130510, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:15.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:10:15.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:15.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:15.108 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:15.108 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:15.108 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:10:15.108 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:15.108 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:10:15.108 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:10:15.108 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:10:15.108 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:10:15.108 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:10:15.108 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:10:15.118 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:10:15.118 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:10:15.118 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:10:15.118 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:10:15.128 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:10:15.128 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:10:15.128 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:10:15.128 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:10:15.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28687 150\n [Camera]
17-03-17 21:10:15.328 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:10:15.758 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:10:15.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:10:15.758 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:10:15.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:10:15.758 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:15.758 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:15.758 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:15.758 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 21:10:15.768 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:15.768 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:10:15.948 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28687 811
17-03-17 21:10:15.988 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.038479,
17-03-17 21:10:16.098 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:10:16.138 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:10:16.138 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:10:16.138 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:16.138 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:10:16.138 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:10:16.138 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:16.148 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:16.148 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:10:16.148 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:10:16.158 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:10:16.298 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:10:16.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:10:16.298 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:16.298 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:10:16.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:10:16.308 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:16.308 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:16.308 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:10:16.308 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:16.308 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:10:16.688 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:10:16.688 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:10:16.688 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:16.688 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:10:16.688 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:10:16.688 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:16.688 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:10:16.698 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:10:16.698 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:10:16.698 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:10:17.238 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-17 21:10:17.238 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:10:17.238 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:10:17.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28687 150' command took 2 ms to send, 2100 ms to get response, and 2107 ms overall
17-03-17 21:10:17.238 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:10:17.348 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:10:17.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.130505728255826. ------
17-03-17 21:10:17.348 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13715 mm
17-03-17 21:10:17.348 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:10:17.348 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:10:17.348 -07 000000431 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 21:10:17.348 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 29961, sync = True, waitForSettling = False)
17-03-17 21:10:17.348 -07 000000476 INF: Z Motor: Moving to -0.137153 mm, started at -0.130506 mm, distance = -6.65 um
17-03-17 21:10:17.358 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:17.368 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:17.378 -07 000000476 INF: FPGA: Xmit ZDACW 29961\n [Z Motor]
17-03-17 21:10:18.238 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:18.238 -07 000000627 INF: FPGA: Recv YRDPOS 139685
17-03-17 21:10:18.238 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:10:18.238 -07 000000476 INF: FPGA: 'ZDACW 29961' command took 0 ms to send, 850 ms to get response, and 881 ms overall
17-03-17 21:10:18.238 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 870 ms to get response, and 884 ms overall
17-03-17 21:10:18.238 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 860 ms to get response, and 881 ms overall
17-03-17 21:10:18.238 -07 000000431 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:18.238 -07 000000431 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:10:18.238 -07 000000431 INF: Y Motor: Moving 1339 steps-15
17-03-17 21:10:18.248 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:10:18.258 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:18.258 -07 000000627 INF: FPGA: Recv ZDACR 29961
17-03-17 21:10:18.268 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:10:18.268 -07 000000476 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:10:18.268 -07 000000476 INF: Z Motor: MoveAbsStepped took 911 ms (did NOT wait for settling yet))
17-03-17 21:10:19.238 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:10:19.238 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 21:10:19.238 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 980 ms to get response, and 999 ms overall
17-03-17 21:10:19.238 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 960 ms to get response, and 993 ms overall
17-03-17 21:10:19.278 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:19.298 -07 000000626 INF: FPGA: Recv YRDPOS 141368
17-03-17 21:10:19.308 -07 000000431 INF: FPGA: 'YRDPOS' command took 23 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:10:19.308 -07 000000431 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:19.308 -07 000000431 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:10:19.308 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 994 ms, distance = 0.838 mm, average velocity = 0.843 mm/sec
17-03-17 21:10:20.258 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:20.258 -07 000000626 INF: FPGA: Recv YRDPOS 141368
17-03-17 21:10:20.268 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:20.268 -07 000000431 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:20.288 -07 000000431 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:10:20.288 -07 000000431 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:10:20.288 -07 000000431 INF: Y Motor: Moved to 69.0273 after 2935 ms (table move)
17-03-17 21:10:20.288 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137153 mm (DAC = 29961)
17-03-17 21:10:20.288 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:20.298 -07 000000431 INF: FPGA: Recv ZSGSRD 30641
17-03-17 21:10:20.298 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:10:20.298 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:20.298 -07 000000431 INF: FPGA: Recv ZSGSRD 30641
17-03-17 21:10:20.308 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:20.308 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:20.308 -07 000000431 INF: FPGA: Recv ZSGSRD 30638
17-03-17 21:10:20.318 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:20.318 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:20.318 -07 000000626 INF: FPGA: Recv ZSGSRD 30636
17-03-17 21:10:20.328 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:20.328 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:20.328 -07 000000431 INF: FPGA: Recv ZSGSRD 30641
17-03-17 21:10:20.338 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:20.338 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:20.338 -07 000000626 INF: FPGA: Recv ZSGSRD 30644
17-03-17 21:10:20.348 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:20.348 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:20.348 -07 000000480 INF: FPGA: Recv ZSGSRD 30640
17-03-17 21:10:20.358 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:20.358 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:20.358 -07 000000431 INF: FPGA: Recv ZSGSRD 30635
17-03-17 21:10:20.368 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:20.368 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:20.368 -07 000000480 INF: FPGA: Recv ZSGSRD 30637
17-03-17 21:10:20.378 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:20.378 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:20.378 -07 000000626 INF: FPGA: Recv ZSGSRD 30641
17-03-17 21:10:20.388 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:20.388 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:20.388 -07 000000480 INF: FPGA: Recv ZPIEZORD 26683
17-03-17 21:10:20.398 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:20.398 -07 000000415 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.572 V. Piezo Error = -8.7 V.
17-03-17 21:10:20.398 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30639 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30640 (-136.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30635 (-136.3 uncal um), Max = 30644 (-136.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:10:20.398 -07 000000415 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30639, posNoise = 5, negNoise = 4
17-03-17 21:10:20.398 -07 000000415 INF: Z Motor: After move to -0.137153, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:20.398 -07 000000415 INF: Z Motor: Settle wait time = 2939 ms, measure time = 103 ms (allowed 150 ms), total time = 3042 ms
17-03-17 21:10:20.398 -07 000000415 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:10:20.448 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3094 ms
17-03-17 21:10:20.448 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:10:20.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:20.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:20.448 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:20.448 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:10:20.448 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:20.448 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:20.448 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:10:20.448 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:10:20.458 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:10:20.458 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:10:20.468 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:10:20.468 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:10:20.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:10:20.518 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:10:20.718 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:10:20.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:10:20.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:10:20.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:10:20.758 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:10:20.758 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 21:10:20.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 21:10:20.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:10:20.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:20.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:10:20.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:10:20.858 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:20.858 -07 000000626 INF: Autofocus start
17-03-17 21:10:20.858 -07 000000626 INF: MeasureProfile start
17-03-17 21:10:20.858 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:20.868 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:10:20.868 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:10:20.868 -07 000000626 INF: MeasureProfile done
17-03-17 21:10:20.868 -07 000000626 INF: X=19  Z correction [um]=0.06744906
17-03-17 21:10:20.868 -07 000000626 INF: Autofocus finished
17-03-17 21:10:21.068 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:10:21.068 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:10:21.068 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.137154787822549. ----------
17-03-17 21:10:21.068 -07 000000610 INF: Cycle	47	Tile	12	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:10:21.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28489, sync = True, waitForSettling = True)
17-03-17 21:10:21.078 -07 000000610 INF: Z Motor: Moving to -0.130414 mm, started at -0.137155 mm, distance = 6.74 um
17-03-17 21:10:21.078 -07 000000610 INF: FPGA: Xmit ZDACW 28489\n [Z Motor]
17-03-17 21:10:21.078 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:10:21.088 -07 000000610 INF: FPGA: 'ZDACW 28489' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:10:21.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:21.088 -07 000000547 INF: FPGA: Recv ZDACR 28489
17-03-17 21:10:21.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:21.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:10:21.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:21.248 -07 000000626 INF: FPGA: Recv ZSGSRD 29595
17-03-17 21:10:21.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:21.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:21.258 -07 000000415 INF: FPGA: Recv ZSGSRD 29594
17-03-17 21:10:21.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:21.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:21.268 -07 000000433 INF: FPGA: Recv ZSGSRD 29587
17-03-17 21:10:21.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:21.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:21.278 -07 000000012 INF: FPGA: Recv ZSGSRD 29590
17-03-17 21:10:21.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:21.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:21.288 -07 000000431 INF: FPGA: Recv ZSGSRD 29589
17-03-17 21:10:21.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:21.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:21.298 -07 000000012 INF: FPGA: Recv ZSGSRD 29595
17-03-17 21:10:21.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:21.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:21.308 -07 000000433 INF: FPGA: Recv ZSGSRD 29589
17-03-17 21:10:21.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:21.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:21.318 -07 000000431 INF: FPGA: Recv ZSGSRD 29589
17-03-17 21:10:21.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:21.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:21.328 -07 000000480 INF: FPGA: Recv ZSGSRD 29593
17-03-17 21:10:21.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:21.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:21.348 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.018051,
17-03-17 21:10:21.348 -07 000000431 INF: FPGA: Recv ZSGSRD 29591
17-03-17 21:10:21.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:10:21.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:21.368 -07 000000012 INF: FPGA: Recv ZPIEZORD 25314
17-03-17 21:10:21.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:10:21.378 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -9.4 V.
17-03-17 21:10:21.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29591 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29590 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29587 (-129.6 uncal um), Max = 29595 (-129.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:10:21.378 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29591, posNoise = 4, negNoise = 4
17-03-17 21:10:21.378 -07 000000610 INF: Z Motor: After move to -0.130414, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:21.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 299 ms)
17-03-17 21:10:21.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:21.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:21.378 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:21.378 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:21.378 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:10:21.378 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:21.378 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:10:21.378 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:10:21.378 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:10:21.378 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:10:21.378 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:10:21.378 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:10:21.388 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:10:21.388 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:10:21.388 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:10:21.388 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:10:21.398 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 21:10:21.408 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:10:21.408 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 18 ms.
17-03-17 21:10:21.408 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 21:10:21.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28665 150\n [Camera]
17-03-17 21:10:21.608 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:10:21.858 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:10:21.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:10:22.028 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:10:22.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:10:22.038 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:22.038 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:10:22.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:10:22.038 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:22.038 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:22.038 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 21:10:22.038 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:22.038 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:10:22.438 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:10:22.438 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:10:22.438 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:22.438 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:10:22.438 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:10:22.438 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:22.438 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:22.438 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:10:22.438 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:22.448 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:10:22.458 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28665 811
17-03-17 21:10:22.458 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:10:22.578 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:10:22.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:10:22.578 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:22.588 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:22.588 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:10:22.968 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:10:22.968 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:10:22.968 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:22.968 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:10:22.968 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:10:22.988 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:10:22.988 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:10:22.988 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:10:22.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28665 150' command took 2 ms to send, 1571 ms to get response, and 1578 ms overall
17-03-17 21:10:22.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:10:22.988 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:23.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:10:23.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.130422213497984. ------
17-03-17 21:10:23.108 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:23.108 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:10:23.478 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:10:23.478 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:10:23.478 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:23.488 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:23.498 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 508 ms.
17-03-17 21:10:23.508 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:24.478 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:24.478 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 960 ms to get response, and 967 ms overall
17-03-17 21:10:24.478 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:10:24.478 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13696 mm
17-03-17 21:10:24.478 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:10:25.538 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:10:25.538 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1050 ms to get response, and 1059 ms overall
17-03-17 21:10:25.538 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:10:25.538 -07 000000438 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 21:10:25.538 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 29919, sync = True, waitForSettling = False)
17-03-17 21:10:25.538 -07 000000433 INF: Z Motor: Moving to -0.136960 mm, started at -0.130422 mm, distance = -6.54 um
17-03-17 21:10:25.548 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:25.558 -07 000000433 INF: FPGA: Xmit ZDACW 29919\n [Z Motor]
17-03-17 21:10:26.068 -07 000000541 INF: FPGA: Recv YRDPOS 141369
17-03-17 21:10:26.068 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 21:10:26.068 -07 000000433 INF: FPGA: 'ZDACW 29919' command took 0 ms to send, 500 ms to get response, and 524 ms overall
17-03-17 21:10:26.068 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 510 ms to get response, and 525 ms overall
17-03-17 21:10:26.068 -07 000000438 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:26.068 -07 000000438 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:10:26.068 -07 000000438 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:10:26.088 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:26.088 -07 000000541 INF: FPGA: Recv ZDACR 29919
17-03-17 21:10:26.098 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:10:26.098 -07 000000433 INF: Z Motor: MoveAbsStepped took 554 ms (did NOT wait for settling yet))
17-03-17 21:10:26.098 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:10:26.468 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 21:10:26.468 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 404 ms overall
17-03-17 21:10:26.508 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:26.508 -07 000000476 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:10:26.518 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:10:26.518 -07 000000438 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:26.518 -07 000000438 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:10:26.518 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.845 mm, average velocity = 2.092 mm/sec
17-03-17 21:10:26.728 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 4.009895,
17-03-17 21:10:26.858 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:10:26.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:10:27.468 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:27.468 -07 000000569 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:10:27.478 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:27.478 -07 000000438 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:27.498 -07 000000438 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:10:27.498 -07 000000438 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:10:27.498 -07 000000438 INF: Y Motor: Moved to 69.8633 after 1958 ms (table move)
17-03-17 21:10:27.498 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136960 mm (DAC = 29919)
17-03-17 21:10:27.498 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:27.498 -07 000000476 INF: FPGA: Recv ZSGSRD 30608
17-03-17 21:10:27.508 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:10:27.508 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:27.508 -07 000000627 INF: FPGA: Recv ZSGSRD 30617
17-03-17 21:10:27.518 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:27.518 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:27.518 -07 000000476 INF: FPGA: Recv ZSGSRD 30608
17-03-17 21:10:27.528 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:27.528 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:27.528 -07 000000541 INF: FPGA: Recv ZSGSRD 30612
17-03-17 21:10:27.538 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:27.538 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:27.538 -07 000000476 INF: FPGA: Recv ZSGSRD 30613
17-03-17 21:10:27.548 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:27.548 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:27.548 -07 000000382 INF: FPGA: Recv ZSGSRD 30608
17-03-17 21:10:27.558 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:27.558 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:27.558 -07 000000627 INF: FPGA: Recv ZSGSRD 30602
17-03-17 21:10:27.568 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:27.568 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:27.568 -07 000000382 INF: FPGA: Recv ZSGSRD 30603
17-03-17 21:10:27.578 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:27.578 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:27.578 -07 000000476 INF: FPGA: Recv ZSGSRD 30613
17-03-17 21:10:27.588 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:27.588 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:27.588 -07 000000476 INF: FPGA: Recv ZSGSRD 30606
17-03-17 21:10:27.598 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:10:27.598 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:27.598 -07 000000382 INF: FPGA: Recv ZPIEZORD 26711
17-03-17 21:10:27.608 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:27.608 -07 000000429 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.565 V. Piezo Error = -8.6 V.
17-03-17 21:10:27.608 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30609 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30608 (-136.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30602 (-136.1 uncal um), Max = 30617 (-136.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:10:27.608 -07 000000429 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30609, posNoise = 8, negNoise = 7
17-03-17 21:10:27.608 -07 000000429 INF: Z Motor: After move to -0.136960, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:27.608 -07 000000429 INF: Z Motor: Settle wait time = 1960 ms, measure time = 104 ms (allowed 150 ms), total time = 2064 ms
17-03-17 21:10:27.608 -07 000000429 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:10:27.658 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3177 ms
17-03-17 21:10:27.658 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:10:27.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:27.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:27.658 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:27.658 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:10:27.658 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:27.658 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:27.658 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:10:27.658 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:10:27.658 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:10:27.658 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:10:27.678 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:10:27.678 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:10:27.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:10:27.718 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:10:27.918 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:10:27.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:10:27.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:10:27.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 21:10:27.958 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:10:27.958 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 21:10:27.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 21:10:28.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:10:28.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:28.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:10:28.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:10:28.158 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:28.158 -07 000000433 INF: Autofocus start
17-03-17 21:10:28.158 -07 000000433 INF: MeasureProfile start
17-03-17 21:10:28.158 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:28.168 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:10:28.168 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:10:28.168 -07 000000433 INF: MeasureProfile done
17-03-17 21:10:28.168 -07 000000433 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 21:10:28.168 -07 000000433 INF: Autofocus finished
17-03-17 21:10:28.368 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:10:28.368 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 21:10:28.368 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136962061458296. ----------
17-03-17 21:10:28.378 -07 000000610 INF: Cycle	47	Tile	13	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:10:28.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28414, sync = True, waitForSettling = True)
17-03-17 21:10:28.378 -07 000000610 INF: Z Motor: Moving to -0.130071 mm, started at -0.136962 mm, distance = 6.89 um
17-03-17 21:10:28.378 -07 000000610 INF: FPGA: Xmit ZDACW 28414\n [Z Motor]
17-03-17 21:10:28.378 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:10:28.388 -07 000000610 INF: FPGA: 'ZDACW 28414' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:10:28.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:28.388 -07 000000627 INF: FPGA: Recv ZDACR 28414
17-03-17 21:10:28.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:28.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:10:28.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:28.548 -07 000000569 INF: FPGA: Recv ZSGSRD 29542
17-03-17 21:10:28.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:28.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:28.558 -07 000000382 INF: FPGA: Recv ZSGSRD 29537
17-03-17 21:10:28.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:28.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:28.568 -07 000000627 INF: FPGA: Recv ZSGSRD 29538
17-03-17 21:10:28.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:28.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:28.578 -07 000000433 INF: FPGA: Recv ZSGSRD 29539
17-03-17 21:10:28.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:28.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:28.588 -07 000000476 INF: FPGA: Recv ZSGSRD 29535
17-03-17 21:10:28.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:28.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:28.598 -07 000000438 INF: FPGA: Recv ZSGSRD 29543
17-03-17 21:10:28.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:28.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:28.608 -07 000000541 INF: FPGA: Recv ZSGSRD 29535
17-03-17 21:10:28.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:28.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:28.618 -07 000000433 INF: FPGA: Recv ZSGSRD 29534
17-03-17 21:10:28.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:28.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:28.628 -07 000000569 INF: FPGA: Recv ZSGSRD 29535
17-03-17 21:10:28.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:28.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:28.638 -07 000000382 INF: FPGA: Recv ZSGSRD 29538
17-03-17 21:10:28.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:28.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:28.648 -07 000000541 INF: FPGA: Recv ZPIEZORD 25276
17-03-17 21:10:28.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:28.658 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.336 V. Piezo Error = -9.4 V.
17-03-17 21:10:28.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29538 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29538 (-129.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29534 (-129.3 uncal um), Max = 29543 (-129.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:10:28.658 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29538, posNoise = 5, negNoise = 4
17-03-17 21:10:28.658 -07 000000610 INF: Z Motor: After move to -0.130071, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:28.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:10:28.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:28.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:28.658 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:28.658 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:28.658 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:10:28.658 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:28.658 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:10:28.658 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:10:28.658 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:10:28.658 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:10:28.658 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:10:28.658 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:10:28.658 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:10:28.658 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:10:28.668 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:10:28.668 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:10:28.678 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:10:28.678 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:10:28.678 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 21:10:28.678 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:10:28.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28590 150\n [Camera]
17-03-17 21:10:28.878 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:10:29.308 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:10:29.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:10:29.308 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:29.308 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:10:29.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:10:29.308 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:29.318 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:29.318 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:10:29.318 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:29.318 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:10:29.498 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28590 811
17-03-17 21:10:29.648 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:10:29.688 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 21:10:29.688 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 21:10:29.688 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:10:29.688 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:29.688 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 21:10:29.688 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:29.698 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:10:29.698 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:10:29.698 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:10:29.698 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:10:29.858 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1167
17-03-17 21:10:29.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1167
17-03-17 21:10:29.858 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:29.858 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1167
17-03-17 21:10:29.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1167
17-03-17 21:10:29.858 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:29.868 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:29.868 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:10:29.868 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:29.868 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 21:10:30.048 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:10:30.048 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:10:30.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28590 150' command took 2 ms to send, 1354 ms to get response, and 1365 ms overall
17-03-17 21:10:30.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:10:30.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.13008173025447. ------
17-03-17 21:10:30.058 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:30.248 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:10:30.248 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:10:30.248 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:30.248 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:10:30.248 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:10:30.248 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:30.258 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:30.258 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:10:30.258 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:30.258 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:10:30.268 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13636 mm
17-03-17 21:10:30.268 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:10:30.268 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:30.268 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 207 ms to get response, and 215 ms overall
17-03-17 21:10:30.268 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:10:30.268 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:10:30.268 -07 000000429 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 21:10:30.278 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:31.238 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29787, sync = True, waitForSettling = False)
17-03-17 21:10:31.238 -07 000000576 INF: Z Motor: Moving to -0.136356 mm, started at -0.130082 mm, distance = -6.27 um
17-03-17 21:10:31.238 -07 000000576 INF: FPGA: Xmit ZDACW 29787\n [Z Motor]
17-03-17 21:10:32.238 -07 000000415 INF: FPGA: Recv YRDPOS 143081
17-03-17 21:10:32.238 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:10:32.238 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:10:32.238 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:10:32.238 -07 000000576 INF: FPGA: 'ZDACW 29787' command took 0 ms to send, 991 ms to get response, and 999 ms overall
17-03-17 21:10:32.238 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:32.238 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:10:32.238 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1960 ms to get response, and 1962 ms overall
17-03-17 21:10:32.238 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1950 ms to get response, and 1961 ms overall
17-03-17 21:10:32.238 -07 000000429 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:32.238 -07 000000541 INF: FPGA: Recv ZDACR 29787
17-03-17 21:10:32.238 -07 000000429 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:10:32.238 -07 000000429 INF: Y Motor: Moving 1342 steps-19
17-03-17 21:10:32.248 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:10:32.248 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:10:32.248 -07 000000576 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-17 21:10:32.548 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.99219,
17-03-17 21:10:32.618 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 21:10:32.618 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 382 ms overall
17-03-17 21:10:32.658 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:32.658 -07 000000431 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:10:32.668 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:10:32.668 -07 000000429 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:32.668 -07 000000429 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:10:32.668 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.839 mm, average velocity = 2.191 mm/sec
17-03-17 21:10:33.618 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:33.618 -07 000000547 INF: FPGA: Recv YRDPOS 144771
17-03-17 21:10:33.628 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:33.628 -07 000000429 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:33.648 -07 000000429 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:10:33.648 -07 000000429 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:10:33.648 -07 000000429 INF: Y Motor: Moved to 70.6890 after 3375 ms (table move)
17-03-17 21:10:33.648 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136356 mm (DAC = 29787)
17-03-17 21:10:33.648 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:33.658 -07 000000576 INF: FPGA: Recv ZSGSRD 30506
17-03-17 21:10:33.658 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 21:10:33.658 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:33.658 -07 000000431 INF: FPGA: Recv ZSGSRD 30522
17-03-17 21:10:33.668 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:10:33.668 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:33.668 -07 000000429 INF: FPGA: Recv ZSGSRD 30518
17-03-17 21:10:33.678 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:33.678 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:33.678 -07 000000626 INF: FPGA: Recv ZSGSRD 30519
17-03-17 21:10:33.688 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:33.688 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:33.688 -07 000000541 INF: FPGA: Recv ZSGSRD 30518
17-03-17 21:10:33.698 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:33.698 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:33.698 -07 000000415 INF: FPGA: Recv ZSGSRD 30522
17-03-17 21:10:33.708 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:33.708 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:33.708 -07 000000429 INF: FPGA: Recv ZSGSRD 30513
17-03-17 21:10:33.718 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:33.718 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:33.718 -07 000000576 INF: FPGA: Recv ZSGSRD 30513
17-03-17 21:10:33.728 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:33.728 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:33.728 -07 000000547 INF: FPGA: Recv ZSGSRD 30515
17-03-17 21:10:33.738 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:33.738 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:33.738 -07 000000576 INF: FPGA: Recv ZSGSRD 30513
17-03-17 21:10:33.748 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:33.748 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:33.748 -07 000000429 INF: FPGA: Recv ZPIEZORD 26570
17-03-17 21:10:33.758 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:33.758 -07 000000476 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.545 V. Piezo Error = -8.7 V.
17-03-17 21:10:33.758 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30516 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30516 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30506 (-135.5 uncal um), Max = 30522 (-135.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:10:33.758 -07 000000476 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30516, posNoise = 6, negNoise = 10
17-03-17 21:10:33.758 -07 000000476 INF: Z Motor: After move to -0.136356, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:33.758 -07 000000476 INF: Z Motor: Settle wait time = 2415 ms, measure time = 103 ms (allowed 150 ms), total time = 2518 ms
17-03-17 21:10:33.758 -07 000000476 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:10:33.808 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3538 ms
17-03-17 21:10:33.808 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:10:33.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:33.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:33.808 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:33.808 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:33.808 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:10:33.808 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:33.808 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:10:33.808 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:10:33.808 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:10:33.808 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:10:33.828 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:10:33.828 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:10:33.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:10:33.878 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:10:34.068 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:10:34.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:10:34.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:10:34.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369425112, 0x0, 559484976) start.
17-03-17 21:10:34.108 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:10:34.118 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 21:10:34.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 21:10:34.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369425112, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:10:34.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:34.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:10:34.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:10:34.218 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:34.218 -07 000000415 INF: Autofocus start
17-03-17 21:10:34.218 -07 000000415 INF: MeasureProfile start
17-03-17 21:10:34.218 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:34.228 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:10:34.228 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:10:34.228 -07 000000415 INF: MeasureProfile done
17-03-17 21:10:34.228 -07 000000415 INF: X=32  Z correction [um]=0.1299841
17-03-17 21:10:34.228 -07 000000415 INF: Autofocus finished
17-03-17 21:10:34.428 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:10:34.428 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:10:34.428 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136364609729112. ----------
17-03-17 21:10:34.428 -07 000000610 INF: Cycle	47	Tile	14	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:10:34.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28328, sync = True, waitForSettling = True)
17-03-17 21:10:34.438 -07 000000610 INF: Z Motor: Moving to -0.129677 mm, started at -0.136365 mm, distance = 6.69 um
17-03-17 21:10:34.438 -07 000000610 INF: FPGA: Xmit ZDACW 28328\n [Z Motor]
17-03-17 21:10:34.438 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:10:34.448 -07 000000610 INF: FPGA: 'ZDACW 28328' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:34.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:34.448 -07 000000431 INF: FPGA: Recv ZDACR 28328
17-03-17 21:10:34.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:34.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:10:34.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:34.608 -07 000000476 INF: FPGA: Recv ZSGSRD 29481
17-03-17 21:10:34.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:34.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:34.618 -07 000000547 INF: FPGA: Recv ZSGSRD 29480
17-03-17 21:10:34.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:10:34.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:34.628 -07 000000429 INF: FPGA: Recv ZSGSRD 29476
17-03-17 21:10:34.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:34.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:34.638 -07 000000476 INF: FPGA: Recv ZSGSRD 29470
17-03-17 21:10:34.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:34.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:34.648 -07 000000431 INF: FPGA: Recv ZSGSRD 29481
17-03-17 21:10:34.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:34.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:34.658 -07 000000429 INF: FPGA: Recv ZSGSRD 29472
17-03-17 21:10:34.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:34.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:34.668 -07 000000431 INF: FPGA: Recv ZSGSRD 29473
17-03-17 21:10:34.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:34.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:34.678 -07 000000459 INF: FPGA: Recv ZSGSRD 29478
17-03-17 21:10:34.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:34.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:34.688 -07 000000431 INF: FPGA: Recv ZSGSRD 29475
17-03-17 21:10:34.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:34.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:34.698 -07 000000459 INF: FPGA: Recv ZSGSRD 29480
17-03-17 21:10:34.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:34.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:34.708 -07 000000547 INF: FPGA: Recv ZPIEZORD 25207
17-03-17 21:10:34.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:34.718 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.323 V. Piezo Error = -9.4 V.
17-03-17 21:10:34.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29477 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29477 (-128.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29470 (-128.9 uncal um), Max = 29481 (-128.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:10:34.718 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29477, posNoise = 4, negNoise = 7
17-03-17 21:10:34.718 -07 000000610 INF: Z Motor: After move to -0.129677, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:34.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:10:34.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:34.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:34.718 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:34.718 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:34.718 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:10:34.718 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:10:34.718 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:10:34.718 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:34.718 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:10:34.718 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:10:34.718 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:10:34.718 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:10:34.728 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:10:34.728 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:10:34.728 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:10:34.728 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:10:34.738 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:10:34.738 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:10:34.738 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:10:34.738 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:10:34.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28505 150\n [Camera]
17-03-17 21:10:34.948 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:10:35.368 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:10:35.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:10:35.368 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:35.368 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:10:35.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:10:35.378 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:35.478 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:35.478 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 21:10:35.478 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:35.478 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:10:35.558 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28505 811
17-03-17 21:10:35.708 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:10:35.858 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:10:35.858 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:10:35.858 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:35.858 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:10:35.858 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:10:35.858 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:35.858 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:35.858 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:35.858 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 489 ms.
17-03-17 21:10:35.868 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 492 ms.
17-03-17 21:10:35.918 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:10:35.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:10:35.918 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:35.918 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:10:35.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:10:35.918 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:35.928 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:35.928 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:10:35.928 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:35.928 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:10:36.108 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-17 21:10:36.108 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:10:36.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28505 150' command took 2 ms to send, 1355 ms to get response, and 1365 ms overall
17-03-17 21:10:36.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:10:36.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129689853313823. ------
17-03-17 21:10:36.118 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:36.118 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13603 mm
17-03-17 21:10:36.118 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:10:36.308 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:10:36.308 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:10:36.308 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:36.308 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:10:36.308 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:10:36.308 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:36.308 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:36.308 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:36.308 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:10:36.318 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:10:36.318 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:36.318 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 198 ms to get response, and 206 ms overall
17-03-17 21:10:36.318 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:10:36.328 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:10:36.328 -07 000000415 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 21:10:36.328 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:36.328 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29716, sync = True, waitForSettling = False)
17-03-17 21:10:36.328 -07 000000626 INF: Z Motor: Moving to -0.136031 mm, started at -0.129690 mm, distance = -6.34 um
17-03-17 21:10:36.338 -07 000000626 INF: FPGA: Xmit ZDACW 29716\n [Z Motor]
17-03-17 21:10:37.238 -07 000000618 INF: FPGA: Recv YRDPOS 144771
17-03-17 21:10:37.238 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 21:10:37.238 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:10:37.238 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:10:37.238 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 905 ms to get response, and 914 ms overall
17-03-17 21:10:37.238 -07 000000415 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:37.238 -07 000000415 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:10:37.238 -07 000000415 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:10:37.238 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:10:37.238 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:10:37.238 -07 000000626 INF: FPGA: 'ZDACW 29716' command took 0 ms to send, 895 ms to get response, and 910 ms overall
17-03-17 21:10:37.238 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 915 ms to get response, and 916 ms overall
17-03-17 21:10:37.248 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:37.248 -07 000000618 INF: FPGA: Recv ZDACR 29716
17-03-17 21:10:37.258 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:10:37.258 -07 000000626 INF: Z Motor: MoveAbsStepped took 925 ms (did NOT wait for settling yet))
17-03-17 21:10:37.618 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 21:10:37.618 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 375 ms to get response, and 378 ms overall
17-03-17 21:10:37.658 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:37.658 -07 000000501 INF: FPGA: Recv YRDPOS 146471
17-03-17 21:10:37.668 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:10:37.668 -07 000000415 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:37.668 -07 000000415 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:10:37.668 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.232 mm/sec
17-03-17 21:10:37.908 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.993549,
17-03-17 21:10:38.618 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:38.618 -07 000000438 INF: FPGA: Recv YRDPOS 146471
17-03-17 21:10:38.628 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:38.628 -07 000000415 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:38.648 -07 000000415 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:10:38.648 -07 000000415 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:10:38.648 -07 000000415 INF: Y Motor: Moved to 71.5190 after 2322 ms (table move)
17-03-17 21:10:38.648 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136031 mm (DAC = 29716)
17-03-17 21:10:38.648 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:38.658 -07 000000626 INF: FPGA: Recv ZSGSRD 30459
17-03-17 21:10:38.658 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 21:10:38.658 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:38.658 -07 000000012 INF: FPGA: Recv ZSGSRD 30465
17-03-17 21:10:38.668 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:10:38.668 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:38.668 -07 000000012 INF: FPGA: Recv ZSGSRD 30465
17-03-17 21:10:38.678 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:38.678 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:38.678 -07 000000012 INF: FPGA: Recv ZSGSRD 30461
17-03-17 21:10:38.688 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:38.688 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:38.688 -07 000000415 INF: FPGA: Recv ZSGSRD 30468
17-03-17 21:10:38.698 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:38.698 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:38.698 -07 000000415 INF: FPGA: Recv ZSGSRD 30463
17-03-17 21:10:38.708 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:38.708 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:38.708 -07 000000626 INF: FPGA: Recv ZSGSRD 30461
17-03-17 21:10:38.718 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:38.718 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:38.718 -07 000000415 INF: FPGA: Recv ZSGSRD 30459
17-03-17 21:10:38.728 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:38.728 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:38.728 -07 000000415 INF: FPGA: Recv ZSGSRD 30465
17-03-17 21:10:38.738 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:38.738 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:38.738 -07 000000626 INF: FPGA: Recv ZSGSRD 30469
17-03-17 21:10:38.748 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:38.748 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:38.748 -07 000000626 INF: FPGA: Recv ZPIEZORD 26524
17-03-17 21:10:38.758 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:38.758 -07 000000459 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.534 V. Piezo Error = -8.7 V.
17-03-17 21:10:38.758 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30464 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30464 (-135.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30459 (-135.2 uncal um), Max = 30469 (-135.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:10:38.758 -07 000000459 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30464, posNoise = 5, negNoise = 5
17-03-17 21:10:38.758 -07 000000459 INF: Z Motor: After move to -0.136031, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:38.758 -07 000000459 INF: Z Motor: Settle wait time = 2323 ms, measure time = 102 ms (allowed 150 ms), total time = 2425 ms
17-03-17 21:10:38.758 -07 000000459 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:10:38.808 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2687 ms
17-03-17 21:10:38.808 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:10:38.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:38.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:38.808 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:38.808 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:38.808 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:10:38.808 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:38.808 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:10:38.808 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:10:38.818 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:10:38.818 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:10:38.828 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:10:38.828 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:10:38.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:10:38.878 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:10:39.078 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:10:39.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:10:39.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:10:39.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) start.
17-03-17 21:10:39.118 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:10:39.118 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 21:10:39.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 21:10:39.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:10:39.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:39.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:10:39.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:10:39.218 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:39.218 -07 000000480 INF: Autofocus start
17-03-17 21:10:39.218 -07 000000480 INF: MeasureProfile start
17-03-17 21:10:39.218 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:39.228 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:10:39.228 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:10:39.228 -07 000000480 INF: MeasureProfile done
17-03-17 21:10:39.228 -07 000000480 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 21:10:39.228 -07 000000480 INF: Autofocus finished
17-03-17 21:10:39.428 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:10:39.428 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:10:39.428 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.136030550697741. ----------
17-03-17 21:10:39.428 -07 000000610 INF: Cycle	47	Tile	15	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:10:39.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28211, sync = True, waitForSettling = True)
17-03-17 21:10:39.438 -07 000000610 INF: Z Motor: Moving to -0.129142 mm, started at -0.136031 mm, distance = 6.89 um
17-03-17 21:10:39.438 -07 000000610 INF: FPGA: Xmit ZDACW 28211\n [Z Motor]
17-03-17 21:10:39.438 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:10:39.448 -07 000000610 INF: FPGA: 'ZDACW 28211' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:10:39.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:39.448 -07 000000438 INF: FPGA: Recv ZDACR 28211
17-03-17 21:10:39.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:39.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:10:39.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:39.608 -07 000000382 INF: FPGA: Recv ZSGSRD 29395
17-03-17 21:10:39.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:39.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:39.618 -07 000000480 INF: FPGA: Recv ZSGSRD 29396
17-03-17 21:10:39.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:39.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:39.628 -07 000000012 INF: FPGA: Recv ZSGSRD 29393
17-03-17 21:10:39.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:39.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:39.638 -07 000000480 INF: FPGA: Recv ZSGSRD 29388
17-03-17 21:10:39.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:39.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:39.648 -07 000000382 INF: FPGA: Recv ZSGSRD 29391
17-03-17 21:10:39.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:39.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:39.658 -07 000000480 INF: FPGA: Recv ZSGSRD 29393
17-03-17 21:10:39.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:39.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:39.668 -07 000000012 INF: FPGA: Recv ZSGSRD 29393
17-03-17 21:10:39.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:39.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:39.678 -07 000000480 INF: FPGA: Recv ZSGSRD 29391
17-03-17 21:10:39.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:39.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:39.688 -07 000000012 INF: FPGA: Recv ZSGSRD 29389
17-03-17 21:10:39.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:39.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:39.698 -07 000000626 INF: FPGA: Recv ZSGSRD 29392
17-03-17 21:10:39.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:39.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:39.708 -07 000000012 INF: FPGA: Recv ZPIEZORD 25135
17-03-17 21:10:39.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:39.718 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.305 V. Piezo Error = -9.4 V.
17-03-17 21:10:39.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29392 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29392 (-128.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29388 (-128.3 uncal um), Max = 29396 (-128.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:10:39.718 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29392, posNoise = 4, negNoise = 4
17-03-17 21:10:39.718 -07 000000610 INF: Z Motor: After move to -0.129142, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:39.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:10:39.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:39.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:39.718 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:39.718 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:39.718 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:10:39.718 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:10:39.718 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:10:39.718 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:39.718 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:10:39.718 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:10:39.718 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:10:39.718 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:10:39.728 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:10:39.728 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:10:39.728 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:10:39.728 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:10:39.738 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:10:39.738 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:10:39.738 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:10:39.738 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:10:39.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28387 150\n [Camera]
17-03-17 21:10:39.938 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:10:40.368 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:10:40.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:10:40.368 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:40.368 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:10:40.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:10:40.378 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:40.478 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:40.478 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:10:40.478 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:40.478 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:10:40.558 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28387 811
17-03-17 21:10:40.708 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:10:40.868 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:10:40.868 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:10:40.868 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:40.878 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:10:40.878 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-17 21:10:40.878 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:10:40.878 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:10:40.878 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:40.878 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:10:40.888 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 514 ms.
17-03-17 21:10:40.918 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:10:40.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:10:40.918 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:40.918 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:10:40.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:10:40.918 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:40.928 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:40.928 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:10:40.928 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:40.928 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:10:41.108 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:10:41.108 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:10:41.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28387 150' command took 2 ms to send, 1355 ms to get response, and 1365 ms overall
17-03-17 21:10:41.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:10:41.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.129143795281773. ------
17-03-17 21:10:41.118 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:41.118 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13531 mm
17-03-17 21:10:41.118 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:10:41.118 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:41.118 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:10:41.118 -07 000000627 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 21:10:41.128 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:10:41.128 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:10:41.138 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:41.328 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:10:41.328 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:10:41.328 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:41.328 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:10:41.328 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:10:41.328 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:41.328 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:41.328 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 21:10:41.328 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:41.338 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 21:10:41.338 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29558, sync = True, waitForSettling = False)
17-03-17 21:10:41.338 -07 000000501 INF: Z Motor: Moving to -0.135308 mm, started at -0.129144 mm, distance = -6.16 um
17-03-17 21:10:41.338 -07 000000501 INF: FPGA: Xmit ZDACW 29558\n [Z Motor]
17-03-17 21:10:41.348 -07 000000438 INF: FPGA: Recv YRDPOS 146471
17-03-17 21:10:41.348 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:10:41.348 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:10:41.348 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 204 ms to get response, and 226 ms overall
17-03-17 21:10:41.348 -07 000000627 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:41.348 -07 000000627 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:10:41.348 -07 000000627 INF: Y Motor: Moving 1350 steps-28
17-03-17 21:10:41.348 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:10:41.348 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 214 ms to get response, and 223 ms overall
17-03-17 21:10:41.348 -07 000000501 INF: FPGA: 'ZDACW 29558' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 21:10:41.358 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:41.358 -07 000000438 INF: FPGA: Recv ZDACR 29558
17-03-17 21:10:41.368 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:10:41.368 -07 000000501 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 21:10:41.728 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 21:10:41.728 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 373 ms to get response, and 378 ms overall
17-03-17 21:10:41.758 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:41.768 -07 000000501 INF: FPGA: Recv YRDPOS 148172
17-03-17 21:10:41.768 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:10:41.768 -07 000000627 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:41.768 -07 000000627 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 21:10:41.768 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.232 mm/sec
17-03-17 21:10:41.848 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:10:41.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:10:42.718 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:42.718 -07 000000501 INF: FPGA: Recv YRDPOS 148172
17-03-17 21:10:42.728 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:42.728 -07 000000627 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:42.748 -07 000000627 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:10:42.748 -07 000000627 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:10:42.748 -07 000000627 INF: Y Motor: Moved to 72.3496 after 1627 ms (table move)
17-03-17 21:10:42.748 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135308 mm (DAC = 29558)
17-03-17 21:10:42.748 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:42.758 -07 000000501 INF: FPGA: Recv ZSGSRD 30356
17-03-17 21:10:42.758 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:10:42.758 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:42.758 -07 000000438 INF: FPGA: Recv ZSGSRD 30353
17-03-17 21:10:42.768 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:10:42.768 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:42.768 -07 000000476 INF: FPGA: Recv ZSGSRD 30349
17-03-17 21:10:42.778 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:42.778 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:42.778 -07 000000501 INF: FPGA: Recv ZSGSRD 30354
17-03-17 21:10:42.788 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:42.788 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:42.788 -07 000000438 INF: FPGA: Recv ZSGSRD 30357
17-03-17 21:10:42.798 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:42.798 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:42.798 -07 000000501 INF: FPGA: Recv ZSGSRD 30349
17-03-17 21:10:42.808 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:42.808 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:42.808 -07 000000627 INF: FPGA: Recv ZSGSRD 30355
17-03-17 21:10:42.818 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:42.818 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:42.818 -07 000000501 INF: FPGA: Recv ZSGSRD 30354
17-03-17 21:10:42.828 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:42.828 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:42.828 -07 000000627 INF: FPGA: Recv ZSGSRD 30343
17-03-17 21:10:42.838 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:42.838 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:42.838 -07 000000501 INF: FPGA: Recv ZSGSRD 30347
17-03-17 21:10:42.848 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:42.848 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:42.848 -07 000000476 INF: FPGA: Recv ZPIEZORD 26414
17-03-17 21:10:42.858 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:42.858 -07 000000569 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.510 V. Piezo Error = -8.7 V.
17-03-17 21:10:42.858 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30352 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30354 (-134.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30343 (-134.5 uncal um), Max = 30357 (-134.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:10:42.858 -07 000000569 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30352, posNoise = 5, negNoise = 9
17-03-17 21:10:42.858 -07 000000569 INF: Z Motor: After move to -0.135308, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:42.858 -07 000000569 INF: Z Motor: Settle wait time = 1410 ms, measure time = 103 ms (allowed 150 ms), total time = 1513 ms
17-03-17 21:10:42.858 -07 000000569 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:10:42.908 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1787 ms
17-03-17 21:10:42.908 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:10:42.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:42.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:42.908 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:42.908 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:10:42.908 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:42.908 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:42.908 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:10:42.908 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:10:42.908 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:10:42.908 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:10:42.918 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 21:10:42.918 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 21:10:42.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:10:42.968 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:10:43.168 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:10:43.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:10:43.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:10:43.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) start.
17-03-17 21:10:43.208 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:10:43.208 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 21:10:43.208 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 21:10:43.278 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.971733,
17-03-17 21:10:43.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2235207384, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:10:43.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:43.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:10:43.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:10:43.308 -07 000000476 INF: Autofocus start
17-03-17 21:10:43.308 -07 000000476 INF: MeasureProfile start
17-03-17 21:10:43.328 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:43.328 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:43.328 -07 000000476 INF: MeasureProfile done
17-03-17 21:10:43.328 -07 000000476 INF: X=64  Z correction [um]=0.2839165
17-03-17 21:10:43.328 -07 000000476 INF: Autofocus finished
17-03-17 21:10:43.338 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:10:43.338 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:10:43.538 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:10:43.538 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:10:43.538 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135311038937864. ----------
17-03-17 21:10:43.538 -07 000000610 INF: Cycle	47	Tile	16	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:10:43.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28133, sync = True, waitForSettling = True)
17-03-17 21:10:43.548 -07 000000610 INF: Z Motor: Moving to -0.128785 mm, started at -0.135311 mm, distance = 6.53 um
17-03-17 21:10:43.548 -07 000000610 INF: FPGA: Xmit ZDACW 28133\n [Z Motor]
17-03-17 21:10:43.548 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:10:43.558 -07 000000610 INF: FPGA: 'ZDACW 28133' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:10:43.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:43.558 -07 000000433 INF: FPGA: Recv ZDACR 28133
17-03-17 21:10:43.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:43.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:10:43.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:43.718 -07 000000476 INF: FPGA: Recv ZSGSRD 29326
17-03-17 21:10:43.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:43.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:43.728 -07 000000627 INF: FPGA: Recv ZSGSRD 29332
17-03-17 21:10:43.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:43.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:43.738 -07 000000569 INF: FPGA: Recv ZSGSRD 29334
17-03-17 21:10:43.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:43.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:43.748 -07 000000476 INF: FPGA: Recv ZSGSRD 29342
17-03-17 21:10:43.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:43.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:43.758 -07 000000576 INF: FPGA: Recv ZSGSRD 29323
17-03-17 21:10:43.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:43.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:43.768 -07 000000627 INF: FPGA: Recv ZSGSRD 29333
17-03-17 21:10:43.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:43.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:43.778 -07 000000576 INF: FPGA: Recv ZSGSRD 29344
17-03-17 21:10:43.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:43.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:43.788 -07 000000569 INF: FPGA: Recv ZSGSRD 29336
17-03-17 21:10:43.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:43.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:43.798 -07 000000576 INF: FPGA: Recv ZSGSRD 29337
17-03-17 21:10:43.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:43.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:43.808 -07 000000627 INF: FPGA: Recv ZSGSRD 29342
17-03-17 21:10:43.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:43.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:43.818 -07 000000541 INF: FPGA: Recv ZPIEZORD 25064
17-03-17 21:10:43.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:43.828 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.293 V. Piezo Error = -9.4 V.
17-03-17 21:10:43.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29335 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29335 (-128.0 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 29323 (-127.9 uncal um), Max = 29344 (-128.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 21:10:43.828 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29335, posNoise = 9, negNoise = 12
17-03-17 21:10:43.828 -07 000000610 INF: Z Motor: After move to -0.128785, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:43.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:10:43.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:43.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:43.828 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:43.828 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:43.828 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:10:43.828 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:10:43.828 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:10:43.828 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:43.828 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:10:43.828 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:10:43.828 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:10:43.828 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:10:43.838 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:10:43.838 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:10:43.838 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:10:43.838 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:10:43.848 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 21:10:43.848 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:10:43.848 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 21:10:43.848 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:10:43.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28310 150\n [Camera]
17-03-17 21:10:44.058 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:10:44.478 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:10:44.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:10:44.478 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:44.478 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:10:44.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:10:44.488 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:44.488 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:44.488 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 21:10:44.488 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:44.488 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 21:10:44.668 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28310 811
17-03-17 21:10:44.818 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:10:44.878 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 21:10:44.878 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:10:44.878 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:44.878 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:10:44.878 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:10:44.878 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:10:44.878 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:44.888 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:10:44.888 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:10:44.888 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:10:45.028 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:10:45.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:10:45.028 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:45.028 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:10:45.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:10:45.028 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:45.138 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:45.138 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 21:10:45.138 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:45.138 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:10:45.218 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:10:45.218 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:10:45.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28310 150' command took 2 ms to send, 1356 ms to get response, and 1367 ms overall
17-03-17 21:10:45.218 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:10:45.218 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128777615189693. ------
17-03-17 21:10:45.228 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:45.228 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13527 mm
17-03-17 21:10:45.228 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:10:45.228 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:10:45.228 -07 000000433 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 21:10:45.238 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:45.538 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 21:10:45.548 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:10:45.548 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:45.548 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 21:10:45.548 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:10:45.548 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:45.548 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:45.548 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-17 21:10:45.548 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:45.558 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 524 ms.
17-03-17 21:10:45.558 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29550, sync = True, waitForSettling = False)
17-03-17 21:10:45.558 -07 000000618 INF: Z Motor: Moving to -0.135271 mm, started at -0.128778 mm, distance = -6.49 um
17-03-17 21:10:45.558 -07 000000618 INF: FPGA: Xmit ZDACW 29550\n [Z Motor]
17-03-17 21:10:45.568 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:45.568 -07 000000627 INF: FPGA: Recv YRDPOS 148172
17-03-17 21:10:45.568 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 332 ms to get response, and 340 ms overall
17-03-17 21:10:45.568 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 322 ms to get response, and 337 ms overall
17-03-17 21:10:45.568 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:10:45.568 -07 000000618 INF: FPGA: 'ZDACW 29550' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 21:10:45.568 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:45.568 -07 000000433 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:45.568 -07 000000433 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:10:45.568 -07 000000433 INF: Y Motor: Moving 1349 steps-27
17-03-17 21:10:45.568 -07 000000627 INF: FPGA: Recv ZDACR 29550
17-03-17 21:10:45.578 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:10:45.578 -07 000000618 INF: Z Motor: MoveAbsStepped took 11 ms (did NOT wait for settling yet))
17-03-17 21:10:45.578 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:10:45.588 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:10:45.788 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:10:45.788 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 21:10:45.948 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 21:10:45.948 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 21:10:45.988 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:45.988 -07 000000627 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:10:45.998 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:10:45.998 -07 000000433 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:45.998 -07 000000433 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 21:10:45.998 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.843 mm, average velocity = 2.195 mm/sec
17-03-17 21:10:46.848 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:10:46.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:10:46.948 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:46.948 -07 000000618 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:10:46.958 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:46.958 -07 000000433 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:46.978 -07 000000433 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:10:46.978 -07 000000433 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:10:46.978 -07 000000433 INF: Y Motor: Moved to 73.1763 after 1748 ms (table move)
17-03-17 21:10:46.978 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135271 mm (DAC = 29550)
17-03-17 21:10:46.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:46.978 -07 000000433 INF: FPGA: Recv ZSGSRD 30354
17-03-17 21:10:46.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:10:46.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:46.988 -07 000000627 INF: FPGA: Recv ZSGSRD 30342
17-03-17 21:10:46.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:46.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:46.998 -07 000000627 INF: FPGA: Recv ZSGSRD 30337
17-03-17 21:10:47.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:47.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:47.008 -07 000000433 INF: FPGA: Recv ZSGSRD 30357
17-03-17 21:10:47.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:47.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:47.018 -07 000000618 INF: FPGA: Recv ZSGSRD 30353
17-03-17 21:10:47.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:47.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:47.028 -07 000000627 INF: FPGA: Recv ZSGSRD 30351
17-03-17 21:10:47.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:47.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:47.038 -07 000000618 INF: FPGA: Recv ZSGSRD 30343
17-03-17 21:10:47.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:47.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:47.048 -07 000000433 INF: FPGA: Recv ZSGSRD 30347
17-03-17 21:10:47.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:47.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:47.058 -07 000000627 INF: FPGA: Recv ZSGSRD 30346
17-03-17 21:10:47.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:47.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:47.068 -07 000000433 INF: FPGA: Recv ZSGSRD 30341
17-03-17 21:10:47.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:47.078 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:47.078 -07 000000618 INF: FPGA: Recv ZPIEZORD 26398
17-03-17 21:10:47.088 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:47.088 -07 000000431 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.509 V. Piezo Error = -8.7 V.
17-03-17 21:10:47.088 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30347 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30346 (-134.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30337 (-134.4 uncal um), Max = 30357 (-134.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:10:47.088 -07 000000431 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30347, posNoise = 10, negNoise = 10
17-03-17 21:10:47.088 -07 000000431 INF: Z Motor: After move to -0.135271, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:47.088 -07 000000431 INF: Z Motor: Settle wait time = 1418 ms, measure time = 104 ms (allowed 150 ms), total time = 1522 ms
17-03-17 21:10:47.088 -07 000000431 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:10:47.138 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1907 ms
17-03-17 21:10:47.138 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:10:47.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:47.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:47.138 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:47.138 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:47.138 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:10:47.138 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:47.138 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:10:47.138 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:10:47.148 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:10:47.148 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:10:47.148 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:10:47.148 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:10:47.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:10:47.198 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:10:47.398 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:10:47.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:10:47.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:10:47.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) start.
17-03-17 21:10:47.438 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:10:47.438 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:10:47.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 286 ms overall
17-03-17 21:10:47.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:10:47.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:47.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:10:47.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 21:10:47.538 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:47.538 -07 000000618 INF: Autofocus start
17-03-17 21:10:47.538 -07 000000618 INF: MeasureProfile start
17-03-17 21:10:47.538 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:47.548 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:10:47.548 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:10:47.548 -07 000000618 INF: MeasureProfile done
17-03-17 21:10:47.548 -07 000000618 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:10:47.548 -07 000000618 INF: Autofocus finished
17-03-17 21:10:47.748 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:10:47.748 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 21:10:47.748 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135278917877155. ----------
17-03-17 21:10:47.748 -07 000000610 INF: Cycle	47	Tile	17	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:10:47.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28057, sync = True, waitForSettling = True)
17-03-17 21:10:47.758 -07 000000610 INF: Z Motor: Moving to -0.128437 mm, started at -0.135279 mm, distance = 6.84 um
17-03-17 21:10:47.758 -07 000000610 INF: FPGA: Xmit ZDACW 28057\n [Z Motor]
17-03-17 21:10:47.758 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:10:47.768 -07 000000610 INF: FPGA: 'ZDACW 28057' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:47.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:47.768 -07 000000382 INF: FPGA: Recv ZDACR 28057
17-03-17 21:10:47.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:47.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:10:47.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:47.928 -07 000000433 INF: FPGA: Recv ZSGSRD 29277
17-03-17 21:10:47.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:47.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:47.938 -07 000000431 INF: FPGA: Recv ZSGSRD 29285
17-03-17 21:10:47.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:47.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:47.948 -07 000000618 INF: FPGA: Recv ZSGSRD 29281
17-03-17 21:10:47.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:47.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:47.958 -07 000000433 INF: FPGA: Recv ZSGSRD 29282
17-03-17 21:10:47.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:47.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:47.968 -07 000000382 INF: FPGA: Recv ZSGSRD 29282
17-03-17 21:10:47.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:47.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:47.978 -07 000000618 INF: FPGA: Recv ZSGSRD 29281
17-03-17 21:10:47.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:47.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:47.988 -07 000000431 INF: FPGA: Recv ZSGSRD 29287
17-03-17 21:10:47.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:47.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:47.998 -07 000000501 INF: FPGA: Recv ZSGSRD 29279
17-03-17 21:10:48.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:48.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:48.008 -07 000000547 INF: FPGA: Recv ZSGSRD 29280
17-03-17 21:10:48.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:48.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:48.018 -07 000000501 INF: FPGA: Recv ZSGSRD 29286
17-03-17 21:10:48.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:48.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:48.028 -07 000000012 INF: FPGA: Recv ZPIEZORD 24997
17-03-17 21:10:48.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:48.038 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.281 V. Piezo Error = -9.4 V.
17-03-17 21:10:48.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29282 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29282 (-127.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29277 (-127.6 uncal um), Max = 29287 (-127.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:10:48.038 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29282, posNoise = 5, negNoise = 5
17-03-17 21:10:48.038 -07 000000610 INF: Z Motor: After move to -0.128437, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:48.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:10:48.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:48.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:48.038 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:48.038 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:10:48.038 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:48.038 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:10:48.038 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:10:48.038 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:48.038 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:10:48.038 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:10:48.038 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:10:48.038 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:10:48.038 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:10:48.038 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:10:48.038 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:10:48.048 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:10:48.048 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:10:48.048 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:10:48.048 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:10:48.048 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:10:48.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28234 150\n [Camera]
17-03-17 21:10:48.258 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:10:48.648 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.986717,
17-03-17 21:10:48.678 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:10:48.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:10:48.678 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:48.688 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:10:48.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:10:48.688 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:48.688 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:48.688 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2183444240, 0x0, 391868352) start.
17-03-17 21:10:48.688 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:48.688 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 21:10:48.878 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28234 811
17-03-17 21:10:49.028 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:10:49.078 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2183444240, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:10:49.078 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:10:49.078 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:49.088 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:10:49.088 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:10:49.088 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:49.088 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:10:49.088 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:10:49.088 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:10:49.098 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 21:10:49.228 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:10:49.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:10:49.228 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:49.228 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:10:49.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:10:49.238 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:49.338 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:49.338 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 21:10:49.348 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:49.348 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 21:10:49.418 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:10:49.418 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:10:49.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28234 150' command took 2 ms to send, 1358 ms to get response, and 1366 ms overall
17-03-17 21:10:49.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:10:49.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128437131946179. ------
17-03-17 21:10:49.428 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:49.428 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13479 mm
17-03-17 21:10:49.428 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:10:49.428 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:10:49.428 -07 000000433 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 21:10:49.438 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:49.738 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 21:10:49.748 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:10:49.748 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:49.748 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 21:10:49.748 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:10:49.748 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:49.748 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:49.748 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 21:10:49.748 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:49.758 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-17 21:10:49.758 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29445, sync = True, waitForSettling = False)
17-03-17 21:10:49.758 -07 000000618 INF: Z Motor: Moving to -0.134791 mm, started at -0.128437 mm, distance = -6.35 um
17-03-17 21:10:49.758 -07 000000618 INF: FPGA: Xmit ZDACW 29445\n [Z Motor]
17-03-17 21:10:49.768 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:49.768 -07 000000382 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:10:49.768 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:10:49.768 -07 000000618 INF: FPGA: 'ZDACW 29445' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 21:10:49.768 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:49.768 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 332 ms to get response, and 338 ms overall
17-03-17 21:10:49.768 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 322 ms to get response, and 335 ms overall
17-03-17 21:10:49.768 -07 000000433 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:49.768 -07 000000433 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:10:49.768 -07 000000433 INF: Y Motor: Moving 1354 steps-33
17-03-17 21:10:49.768 -07 000000382 INF: FPGA: Recv ZDACR 29445
17-03-17 21:10:49.778 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:10:49.778 -07 000000618 INF: Z Motor: MoveAbsStepped took 11 ms (did NOT wait for settling yet))
17-03-17 21:10:49.778 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:10:49.788 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:10:49.988 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:10:49.988 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 21:10:50.148 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 21:10:50.148 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 21:10:50.178 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:50.188 -07 000000012 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:10:50.188 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:10:50.188 -07 000000433 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:50.188 -07 000000433 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:10:50.188 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.846 mm, average velocity = 2.204 mm/sec
17-03-17 21:10:51.138 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:51.138 -07 000000618 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:10:51.148 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:51.148 -07 000000433 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:51.158 -07 000000433 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:10:51.158 -07 000000433 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:10:51.158 -07 000000433 INF: Y Motor: Moved to 74.0078 after 1732 ms (table move)
17-03-17 21:10:51.168 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134791 mm (DAC = 29445)
17-03-17 21:10:51.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:51.168 -07 000000382 INF: FPGA: Recv ZSGSRD 30275
17-03-17 21:10:51.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:10:51.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:51.178 -07 000000382 INF: FPGA: Recv ZSGSRD 30269
17-03-17 21:10:51.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:51.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:51.188 -07 000000382 INF: FPGA: Recv ZSGSRD 30276
17-03-17 21:10:51.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:51.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:51.198 -07 000000433 INF: FPGA: Recv ZSGSRD 30267
17-03-17 21:10:51.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:51.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:51.208 -07 000000459 INF: FPGA: Recv ZSGSRD 30270
17-03-17 21:10:51.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:51.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:51.218 -07 000000618 INF: FPGA: Recv ZSGSRD 30283
17-03-17 21:10:51.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:51.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:51.228 -07 000000618 INF: FPGA: Recv ZSGSRD 30266
17-03-17 21:10:51.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:51.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:51.238 -07 000000618 INF: FPGA: Recv ZSGSRD 30266
17-03-17 21:10:51.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:51.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:51.248 -07 000000433 INF: FPGA: Recv ZSGSRD 30275
17-03-17 21:10:51.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:51.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:51.258 -07 000000433 INF: FPGA: Recv ZSGSRD 30274
17-03-17 21:10:51.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:51.268 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:51.268 -07 000000618 INF: FPGA: Recv ZPIEZORD 26333
17-03-17 21:10:51.278 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:51.278 -07 000000431 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.493 V. Piezo Error = -8.7 V.
17-03-17 21:10:51.278 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30272 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30272 (-134.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30266 (-134.0 uncal um), Max = 30283 (-134.1 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:10:51.278 -07 000000431 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30272, posNoise = 11, negNoise = 6
17-03-17 21:10:51.278 -07 000000431 INF: Z Motor: After move to -0.134791, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:51.278 -07 000000431 INF: Z Motor: Settle wait time = 1404 ms, measure time = 108 ms (allowed 150 ms), total time = 1512 ms
17-03-17 21:10:51.278 -07 000000431 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 21:10:51.328 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1895 ms
17-03-17 21:10:51.328 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:10:51.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:51.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:51.328 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:51.328 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:51.328 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:10:51.328 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:51.338 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:10:51.338 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:10:51.338 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:10:51.338 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:10:51.338 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:10:51.338 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:10:51.348 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:10:51.388 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:10:51.588 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:10:51.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:10:51.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:10:51.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) start.
17-03-17 21:10:51.628 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:10:51.628 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 21:10:51.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 21:10:51.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2147487792, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 21:10:51.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:51.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:10:51.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 21:10:51.728 -07 000000431 INF: Autofocus start
17-03-17 21:10:51.728 -07 000000431 INF: MeasureProfile start
17-03-17 21:10:51.728 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:51.728 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:51.738 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:10:51.738 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:10:51.738 -07 000000431 INF: MeasureProfile done
17-03-17 21:10:51.738 -07 000000431 INF: X=32  Z correction [um]=0.1299841
17-03-17 21:10:51.738 -07 000000431 INF: Autofocus finished
17-03-17 21:10:51.848 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:10:51.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:10:51.938 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:10:51.938 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 21:10:51.938 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.134797101966523. ----------
17-03-17 21:10:51.938 -07 000000610 INF: Cycle	47	Tile	18	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:10:51.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27986, sync = True, waitForSettling = True)
17-03-17 21:10:51.948 -07 000000610 INF: Z Motor: Moving to -0.128112 mm, started at -0.134797 mm, distance = 6.69 um
17-03-17 21:10:51.948 -07 000000610 INF: FPGA: Xmit ZDACW 27986\n [Z Motor]
17-03-17 21:10:51.948 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:10:51.958 -07 000000610 INF: FPGA: 'ZDACW 27986' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:51.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:51.958 -07 000000433 INF: FPGA: Recv ZDACR 27986
17-03-17 21:10:51.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:51.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:10:52.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:52.118 -07 000000431 INF: FPGA: Recv ZSGSRD 29227
17-03-17 21:10:52.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:52.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:52.128 -07 000000382 INF: FPGA: Recv ZSGSRD 29233
17-03-17 21:10:52.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:52.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:52.138 -07 000000459 INF: FPGA: Recv ZSGSRD 29232
17-03-17 21:10:52.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:52.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:52.148 -07 000000618 INF: FPGA: Recv ZSGSRD 29230
17-03-17 21:10:52.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:52.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:52.158 -07 000000431 INF: FPGA: Recv ZSGSRD 29236
17-03-17 21:10:52.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:52.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:52.168 -07 000000415 INF: FPGA: Recv ZSGSRD 29231
17-03-17 21:10:52.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:52.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:52.178 -07 000000480 INF: FPGA: Recv ZSGSRD 29234
17-03-17 21:10:52.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:52.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:52.188 -07 000000618 INF: FPGA: Recv ZSGSRD 29232
17-03-17 21:10:52.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:10:52.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:52.198 -07 000000382 INF: FPGA: Recv ZSGSRD 29230
17-03-17 21:10:52.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:52.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:52.208 -07 000000012 INF: FPGA: Recv ZSGSRD 29230
17-03-17 21:10:52.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:52.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:52.218 -07 000000431 INF: FPGA: Recv ZPIEZORD 24985
17-03-17 21:10:52.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:52.228 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.270 V. Piezo Error = -9.3 V.
17-03-17 21:10:52.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29232 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29232 (-127.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29227 (-127.3 uncal um), Max = 29236 (-127.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:10:52.228 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29232, posNoise = 4, negNoise = 5
17-03-17 21:10:52.228 -07 000000610 INF: Z Motor: After move to -0.128112, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:52.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:10:52.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:52.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:52.228 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:52.228 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:52.228 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:10:52.228 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:10:52.228 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:10:52.228 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:52.228 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:10:52.228 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:10:52.228 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:10:52.228 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:10:52.228 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:10:52.228 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:10:52.238 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:10:52.238 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:10:52.238 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:10:52.238 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:10:52.248 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:10:52.248 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:10:52.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28162 150\n [Camera]
17-03-17 21:10:52.448 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:10:52.878 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:10:52.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:10:52.878 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:52.878 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:10:52.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:10:52.878 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:52.878 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:52.878 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2179038936, 0x0, 391868352) start.
17-03-17 21:10:52.878 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:52.878 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2214461200, 0x0, 418435064) start.
17-03-17 21:10:53.068 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28162 811
17-03-17 21:10:53.218 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:10:53.278 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2179038936, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:10:53.278 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:10:53.278 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:53.278 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2214461200, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:10:53.278 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:10:53.278 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:10:53.278 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:10:53.278 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:53.278 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:10:53.288 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 21:10:53.418 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1166
17-03-17 21:10:53.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1166
17-03-17 21:10:53.428 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:53.428 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1166
17-03-17 21:10:53.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1166
17-03-17 21:10:53.428 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:53.428 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:53.428 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 21:10:53.428 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:53.428 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 21:10:53.618 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1359
17-03-17 21:10:53.618 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:10:53.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28162 150' command took 2 ms to send, 1361 ms to get response, and 1366 ms overall
17-03-17 21:10:53.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:10:53.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.128115921339091. ------
17-03-17 21:10:53.728 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13451 mm
17-03-17 21:10:53.728 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:10:53.728 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:53.728 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:10:53.728 -07 000000012 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 21:10:53.728 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29384, sync = True, waitForSettling = False)
17-03-17 21:10:53.728 -07 000000382 INF: Z Motor: Moving to -0.134511 mm, started at -0.128116 mm, distance = -6.40 um
17-03-17 21:10:53.728 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:53.738 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:10:53.738 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:53.738 -07 000000480 INF: FPGA: Recv YRDPOS 151569
17-03-17 21:10:53.748 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:10:53.748 -07 000000382 INF: FPGA: Xmit ZDACW 29384\n [Z Motor]
17-03-17 21:10:53.748 -07 000000012 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:53.748 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:10:53.748 -07 000000012 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:10:53.748 -07 000000012 INF: Y Motor: Moving 1351 steps-30
17-03-17 21:10:53.758 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:10:53.758 -07 000000382 INF: FPGA: 'ZDACW 29384' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:10:53.768 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:10:53.778 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:53.778 -07 000000438 INF: FPGA: Recv ZDACR 29384
17-03-17 21:10:53.788 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:10:53.788 -07 000000382 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 21:10:53.818 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:10:53.818 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:10:53.818 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:53.828 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:10:53.828 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:10:53.828 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:53.828 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:53.828 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:53.828 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:10:53.838 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 21:10:53.958 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:10:53.958 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:10:54.038 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.99219,
17-03-17 21:10:54.138 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:10:54.138 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 21:10:54.168 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:54.168 -07 000000415 INF: FPGA: Recv YRDPOS 153256
17-03-17 21:10:54.178 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:10:54.178 -07 000000012 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:54.178 -07 000000012 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 21:10:54.178 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.139 mm/sec
17-03-17 21:10:55.128 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:55.128 -07 000000382 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:10:55.138 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:55.138 -07 000000012 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:55.148 -07 000000012 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:10:55.148 -07 000000012 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:10:55.148 -07 000000012 INF: Y Motor: Moved to 74.8325 after 1419 ms (table move)
17-03-17 21:10:55.148 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134511 mm (DAC = 29384)
17-03-17 21:10:55.148 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:55.158 -07 000000438 INF: FPGA: Recv ZSGSRD 30226
17-03-17 21:10:55.158 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 21:10:55.158 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:55.158 -07 000000382 INF: FPGA: Recv ZSGSRD 30230
17-03-17 21:10:55.168 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:10:55.168 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:55.168 -07 000000012 INF: FPGA: Recv ZSGSRD 30227
17-03-17 21:10:55.178 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:55.178 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:55.178 -07 000000012 INF: FPGA: Recv ZSGSRD 30225
17-03-17 21:10:55.188 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:55.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:55.188 -07 000000012 INF: FPGA: Recv ZSGSRD 30227
17-03-17 21:10:55.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:55.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:55.198 -07 000000415 INF: FPGA: Recv ZSGSRD 30227
17-03-17 21:10:55.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:10:55.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:55.208 -07 000000480 INF: FPGA: Recv ZSGSRD 30235
17-03-17 21:10:55.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:55.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:55.218 -07 000000415 INF: FPGA: Recv ZSGSRD 30234
17-03-17 21:10:55.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:55.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:55.228 -07 000000438 INF: FPGA: Recv ZSGSRD 30232
17-03-17 21:10:55.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:55.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:55.238 -07 000000480 INF: FPGA: Recv ZSGSRD 30224
17-03-17 21:10:55.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:55.248 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:55.248 -07 000000480 INF: FPGA: Recv ZPIEZORD 26332
17-03-17 21:10:55.258 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:55.258 -07 000000431 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.484 V. Piezo Error = -8.6 V.
17-03-17 21:10:55.258 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30229 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30227 (-133.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30224 (-133.7 uncal um), Max = 30235 (-133.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:10:55.258 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30229, posNoise = 6, negNoise = 5
17-03-17 21:10:55.258 -07 000000431 INF: Z Motor: After move to -0.134511, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:55.258 -07 000000431 INF: Z Motor: Settle wait time = 1422 ms, measure time = 101 ms (allowed 150 ms), total time = 1523 ms
17-03-17 21:10:55.258 -07 000000431 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 21:10:55.308 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 21:10:55.308 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:10:55.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:55.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:55.308 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:55.308 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:10:55.308 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:55.308 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:55.308 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:10:55.308 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:10:55.318 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:10:55.318 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:10:55.328 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:10:55.328 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:10:55.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:10:55.368 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:10:55.568 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:10:55.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:10:55.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:10:55.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 21:10:55.608 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:10:55.608 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:10:55.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:10:55.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 21:10:55.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:55.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:10:55.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 21:10:55.708 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:10:55.708 -07 000000438 INF: Autofocus start
17-03-17 21:10:55.708 -07 000000438 INF: MeasureProfile start
17-03-17 21:10:55.708 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:10:55.718 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:10:55.718 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:10:55.718 -07 000000438 INF: MeasureProfile done
17-03-17 21:10:55.718 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:10:55.718 -07 000000438 INF: Autofocus finished
17-03-17 21:10:55.918 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:10:55.918 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:10:55.918 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134520860844427. ----------
17-03-17 21:10:55.918 -07 000000610 INF: Cycle	47	Tile	19	Exposure Settings		A	426	G	205	T	205	C	426
17-03-17 21:10:55.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27892, sync = True, waitForSettling = True)
17-03-17 21:10:55.928 -07 000000610 INF: Z Motor: Moving to -0.127681 mm, started at -0.134521 mm, distance = 6.84 um
17-03-17 21:10:55.928 -07 000000610 INF: FPGA: Xmit ZDACW 27892\n [Z Motor]
17-03-17 21:10:55.928 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:10:55.938 -07 000000610 INF: FPGA: 'ZDACW 27892' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:10:55.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:10:55.938 -07 000000012 INF: FPGA: Recv ZDACR 27892
17-03-17 21:10:55.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:55.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:10:56.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:56.098 -07 000000429 INF: FPGA: Recv ZSGSRD 29163
17-03-17 21:10:56.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:10:56.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:56.108 -07 000000431 INF: FPGA: Recv ZSGSRD 29169
17-03-17 21:10:56.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:56.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:56.118 -07 000000429 INF: FPGA: Recv ZSGSRD 29157
17-03-17 21:10:56.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:56.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:56.128 -07 000000431 INF: FPGA: Recv ZSGSRD 29165
17-03-17 21:10:56.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:56.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:56.138 -07 000000415 INF: FPGA: Recv ZSGSRD 29163
17-03-17 21:10:56.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:56.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:56.148 -07 000000480 INF: FPGA: Recv ZSGSRD 29169
17-03-17 21:10:56.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:56.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:56.158 -07 000000431 INF: FPGA: Recv ZSGSRD 29166
17-03-17 21:10:56.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:56.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:56.168 -07 000000480 INF: FPGA: Recv ZSGSRD 29163
17-03-17 21:10:56.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:56.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:56.178 -07 000000431 INF: FPGA: Recv ZSGSRD 29167
17-03-17 21:10:56.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:56.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:10:56.188 -07 000000480 INF: FPGA: Recv ZSGSRD 29165
17-03-17 21:10:56.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:56.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:10:56.198 -07 000000431 INF: FPGA: Recv ZPIEZORD 24883
17-03-17 21:10:56.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:10:56.208 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.256 V. Piezo Error = -9.4 V.
17-03-17 21:10:56.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29165 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29165 (-126.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29157 (-126.9 uncal um), Max = 29169 (-126.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:10:56.208 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29165, posNoise = 4, negNoise = 8
17-03-17 21:10:56.208 -07 000000610 INF: Z Motor: After move to -0.127681, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:10:56.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:10:56.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:10:56.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:10:56.208 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:10:56.208 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:10:56.208 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:10:56.208 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:10:56.208 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:10:56.208 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:10:56.208 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:10:56.208 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:10:56.208 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:10:56.208 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:10:56.218 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:10:56.218 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:10:56.218 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:10:56.218 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:10:56.228 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:10:56.228 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:10:56.228 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:10:56.228 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:10:56.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 426 426 205 205 28069 150\n [Camera]
17-03-17 21:10:56.428 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:10:56.848 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:10:56.848 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 46. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:10:56.858 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 618
17-03-17 21:10:56.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 618
17-03-17 21:10:56.858 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:56.858 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 618
17-03-17 21:10:56.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 618
17-03-17 21:10:56.858 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:56.858 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:56.858 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 21:10:56.868 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:56.868 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:10:57.048 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28069 811
17-03-17 21:10:57.198 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 961
17-03-17 21:10:57.238 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:10:57.238 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 21:10:57.238 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:57.238 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:10:57.238 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:10:57.238 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:10:57.238 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:10:57.238 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:57.248 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:57.258 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:10:57.398 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1167
17-03-17 21:10:57.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1167
17-03-17 21:10:57.398 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:10:57.408 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1167
17-03-17 21:10:57.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1167
17-03-17 21:10:57.408 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:10:57.408 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:10:57.408 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:10:57.408 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:10:57.408 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:10:57.588 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1358
17-03-17 21:10:57.588 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:10:57.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 426 426 205 205 28069 150' command took 2 ms to send, 1359 ms to get response, and 1366 ms overall
17-03-17 21:10:57.798 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 21:10:57.798 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:10:57.798 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:57.798 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 21:10:57.798 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:10:57.798 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:10:57.808 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:57.808 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:10:57.808 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:10:57.808 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:10:57.818 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 21:10:57.848 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-17 21:10:57.848 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:10:57.888 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 21:10:57.908 -07 000000610 INF: Enabling Skipping AutoFocus in the next 5 cycles.
17-03-17 21:10:57.908 -07 000000610 INF: Imaging Cycle 47: ScanTilesCommand Cycle 47 time end. Duration was 161254 ms.
17-03-17 21:10:57.908 -07 000000610 INF: =================== Cycle #47 ===================
17-03-17 21:10:57.908 -07 000000610 INF: ===================  ===================
17-03-17 21:10:57.908 -07 000000626 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:10:57.908 -07 000000415 INF: FPGA: Recv EXLED1ADCR 23
17-03-17 21:10:57.918 -07 000000626 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:10:57.918 -07 000000626 INF: GreenLED: Using Green data: Photodiode ADC 23 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.6 mW
17-03-17 21:10:57.918 -07 000000626 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 47, FrontChillerTemperature: 3.99219, FrontChillerHeatSinkTemperature: 0.538322, AmbientTemperature: 19.05768, FlowCellCompartmentTemperature: 21.98965, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.84563, GreenLEDSensorTemperature: 25.8537, PhotodiodePowerAdcGreen: 23, PhotodiodePowerMwGreen: 1.653493
17-03-17 21:10:57.958 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.