17-03-17 21:10:58.008 -07 000000610 INF: =================== Cycle #48 ===================
17-03-17 21:10:58.008 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 21:10:58.008 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 21:10:58.008 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:10:58.008 -07 000000415 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:10:58.018 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:10:58.018 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:10:58.018 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 21:10:58.018 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 21:10:58.018 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 21:10:58.128 -07 000000429 INF: FPGA: Recv YMVTO 154378 872
17-03-17 21:10:58.128 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 21:10:58.128 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 21:10:58.128 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 21:10:58.128 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 21:10:59.398 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.997626,
17-03-17 21:11:01.128 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:11:01.128 -07 000000429 INF: FPGA: Recv YRDPOS 154381
17-03-17 21:11:01.138 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:11:01.138 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:11:01.148 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:11:01.148 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 21:11:01.148 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3141 ms
17-03-17 21:11:01.158 -07 000000610 INF: =================== Cycle #48, Flow Cell Temp 60° ===================
17-03-17 21:11:01.158 -07 000000610 INF: =================== Cycle #48, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 21:11:01.158 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 21:11:01.168 -07 000000480 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:11:01.168 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:11:01.168 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:11:01.168 -07 000000480 INF: FPGA: Recv TEC2EN 
17-03-17 21:11:01.178 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:11:01.178 -07 000000610 INF: =================== Cycle #48, Flow Cell Temp 60° ===================
17-03-17 21:11:01.178 -07 000000610 INF: =================== Cycle #48 ===================
17-03-17 21:11:01.178 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:11:01.178 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:11:01.208 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:11:01.208 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 21:11:01.208 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:11:01.508 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:11:01.528 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:11:01.528 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:11:01.578 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:11:01.598 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:11:01.598 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:11:01.698 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3) ===================
17-03-17 21:11:01.698 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:11:01.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:11:01.728 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:11:01.728 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:11:01.728 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:11:01.858 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:11:01.858 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:11:01.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:11:01.898 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:11:04.768 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.996267,
17-03-17 21:11:05.028 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:05.058 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:11:05.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:05.508 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:11:05.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:05.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:11:05.958 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:11:05.958 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3) ===================
17-03-17 21:11:06.088 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:11:06.118 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:11:06.118 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:11:06.248 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:11:06.278 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:11:06.278 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:11:06.278 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:11:06.408 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:11:06.438 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:11:06.858 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:11:06.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:11:06.868 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:06.898 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:11:06.898 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:11:06.898 -07 000000610 INF: =================== Cycle #48 ===================
17-03-17 21:11:08.118 -07 000000610 INF: AsyncDelayTimer waited 1214ms
17-03-17 21:11:08.118 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 21:11:08.118 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:11:08.138 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:11:08.138 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 21:11:08.138 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 21:11:08.268 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:11:08.288 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 21:11:08.288 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 21:11:08.338 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:11:08.358 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:11:08.358 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:11:08.458 -07 000000610 INF: =================== Cycle #48, Pumping Reagent CMS (4) ===================
17-03-17 21:11:08.458 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:11:08.458 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:11:08.488 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:11:08.488 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:11:08.488 -07 000000610 INF: =================== Cycle #48, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 21:11:08.618 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:11:08.658 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:11:10.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:10.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:11:10.138 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.042558,
17-03-17 21:11:10.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:10.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:11:10.578 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:11:10.578 -07 000000610 INF: =================== Cycle #48, Pumping Reagent CMS (4) ===================
17-03-17 21:11:10.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:11:10.738 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:11:10.738 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:11:10.868 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:11:10.898 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:11:10.898 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:11:10.898 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:11:11.028 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:11:11.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:11:11.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:11.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:11:11.518 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:11:11.518 -07 000000610 INF: =================== Cycle #48 ===================
17-03-17 21:11:11.848 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:11:11.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=736, Total=1457. Warn if over 250 bubbles per interval.
17-03-17 21:11:12.738 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 21:11:12.738 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:11:12.738 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:11:12.758 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:11:12.758 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 21:11:12.758 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 21:11:12.908 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:11:12.928 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 21:11:12.928 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 21:11:12.978 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:11:12.998 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:11:12.998 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:11:13.098 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3) ===================
17-03-17 21:11:13.098 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:11:13.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:11:13.128 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:11:13.128 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:11:13.128 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:11:13.258 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:11:13.298 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:11:14.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:14.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:11:14.198 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:11:14.198 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3) ===================
17-03-17 21:11:14.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:11:14.358 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:11:14.358 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:11:14.488 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:11:14.518 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:11:14.518 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:11:14.518 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:11:14.648 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:11:14.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:11:15.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:15.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:11:15.138 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:11:15.138 -07 000000610 INF: =================== Cycle #48 ===================
17-03-17 21:11:15.138 -07 000000415 INF: WaitCommand(10000) start
17-03-17 21:11:15.138 -07 000000431 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:11:15.138 -07 000000431 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:11:15.508 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.037119,
17-03-17 21:11:16.358 -07 000000431 INF: AsyncDelayTimer waited 1215ms
17-03-17 21:11:16.358 -07 000000431 INF: LanePump: Xmit /1?\r
17-03-17 21:11:16.388 -07 000000431 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:11:16.388 -07 000000431 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:11:16.518 -07 000000431 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:11:16.558 -07 000000431 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:11:16.848 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 21:11:16.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=737, Total=1458. Warn if over 250 bubbles per interval.
17-03-17 21:11:18.088 -07 000000431 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:18.118 -07 000000431 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:11:18.538 -07 000000431 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:18.568 -07 000000431 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:11:18.568 -07 000000431 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 21:11:18.568 -07 000000431 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:11:18.568 -07 000000431 INF: ===================  ===================
17-03-17 21:11:20.888 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.988112,
17-03-17 21:11:21.848 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:11:21.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=737, Total=1458. Warn if over 250 bubbles per interval.
17-03-17 21:11:25.148 -07 000000415 INF: WaitCommand(10000) end
17-03-17 21:11:25.148 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3) ===================
17-03-17 21:11:25.148 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 21:11:25.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:11:25.188 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:11:25.188 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:11:25.188 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:11:25.318 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 21:11:25.358 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:11:26.248 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.983999,
17-03-17 21:11:26.848 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:11:26.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=737, Total=1458. Warn if over 250 bubbles per interval.
17-03-17 21:11:31.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:31.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:11:31.618 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.014009,
17-03-17 21:11:31.858 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:11:31.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=721, R2=737, Total=1458. Warn if over 250 bubbles per interval.
17-03-17 21:11:31.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:31.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:11:32.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:32.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:11:32.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:32.868 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:11:33.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:33.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:11:33.318 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 21:11:33.318 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3) ===================
17-03-17 21:11:33.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:11:33.478 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:11:33.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:11:33.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:11:33.638 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:11:33.638 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:11:33.638 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:11:33.768 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:11:33.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:11:34.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:34.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:11:34.258 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:11:34.258 -07 000000610 INF: =================== Cycle #48 ===================
17-03-17 21:11:35.478 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 21:11:35.478 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 21:11:35.478 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:11:35.498 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:11:35.498 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 21:11:35.498 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 21:11:35.708 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:11:35.728 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 21:11:35.728 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 21:11:35.778 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:11:35.798 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:11:35.798 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:11:35.898 -07 000000610 INF: =================== Cycle #48, Pumping Reagent IMT (1) ===================
17-03-17 21:11:35.898 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:11:35.898 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:11:35.928 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:11:35.928 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:11:35.928 -07 000000610 INF: =================== Cycle #48, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 21:11:36.058 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:11:36.098 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:11:36.858 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 21:11:36.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=723, R2=739, Total=1462. Warn if over 250 bubbles per interval.
17-03-17 21:11:36.998 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.989471,
17-03-17 21:11:37.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:37.568 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:11:37.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:38.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:11:38.018 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:11:38.018 -07 000000610 INF: =================== Cycle #48, Pumping Reagent IMT (1) ===================
17-03-17 21:11:38.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:11:38.178 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:11:38.178 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:11:38.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:11:38.338 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:11:38.338 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:11:38.338 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:11:38.468 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:11:38.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:11:38.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:38.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:11:38.958 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:11:38.958 -07 000000610 INF: =================== Cycle #48 ===================
17-03-17 21:11:40.178 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:11:40.178 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:11:40.178 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:11:40.198 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:11:40.198 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 21:11:40.198 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:11:40.428 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:11:40.448 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 21:11:40.448 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 21:11:40.498 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:11:40.518 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:11:40.518 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:11:40.618 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3) ===================
17-03-17 21:11:40.618 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:11:40.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:11:40.648 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:11:40.648 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:11:40.648 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:11:40.778 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:11:40.818 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:11:41.688 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:41.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:11:41.718 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:11:41.718 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3) ===================
17-03-17 21:11:41.848 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:11:41.858 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 21:11:41.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=740, Total=1464. Warn if over 250 bubbles per interval.
17-03-17 21:11:41.878 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:11:41.878 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:11:42.008 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:11:42.038 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:11:42.038 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:11:42.038 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:11:42.168 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:11:42.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:11:42.358 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.008536,
17-03-17 21:11:42.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:11:42.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:11:42.658 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:11:42.658 -07 000000610 INF: =================== Cycle #48 ===================
17-03-17 21:11:42.658 -07 000000610 INF: =================== Cycle #48, Flow Cell Temp 65° ===================
17-03-17 21:11:42.658 -07 000000610 INF: =================== Cycle #48, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 21:11:42.718 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:11:42.718 -07 000000576 INF: FPGA: Recv TEC2EN 
17-03-17 21:11:42.728 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:11:42.728 -07 000000610 INF: =================== Cycle #48, Flow Cell Temp 65° ===================
17-03-17 21:11:42.728 -07 000000610 INF: =================== Cycle #48 ===================
17-03-17 21:11:42.728 -07 000000610 INF: WaitCommand(30000) start
17-03-17 21:11:46.858 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:11:46.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=740, Total=1464. Warn if over 250 bubbles per interval.
17-03-17 21:11:47.728 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.033041,
17-03-17 21:11:51.858 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:11:51.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=740, Total=1464. Warn if over 250 bubbles per interval.
17-03-17 21:11:53.098 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.030322,
17-03-17 21:11:56.858 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:11:56.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=740, Total=1464. Warn if over 250 bubbles per interval.
17-03-17 21:11:58.468 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.003063,
17-03-17 21:12:01.858 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:12:01.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=740, Total=1464. Warn if over 250 bubbles per interval.
17-03-17 21:12:03.838 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.985358,
17-03-17 21:12:06.858 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:12:06.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=740, Total=1464. Warn if over 250 bubbles per interval.
17-03-17 21:12:09.208 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.005817,
17-03-17 21:12:11.858 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:12:11.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=740, Total=1464. Warn if over 250 bubbles per interval.
17-03-17 21:12:12.738 -07 000000610 INF: WaitCommand(30000) end
17-03-17 21:12:12.738 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3) ===================
17-03-17 21:12:12.738 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 21:12:12.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:12:12.818 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:12:12.818 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:12:12.818 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:12:12.948 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 21:12:12.988 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:12:13.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:12:13.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:12:13.558 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 21:12:13.558 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3) ===================
17-03-17 21:12:13.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:12:13.718 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:12:13.718 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:12:13.848 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:12:13.878 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:12:13.878 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:12:13.878 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:12:14.008 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:12:14.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:12:14.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:12:14.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:12:14.498 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:12:14.498 -07 000000610 INF: =================== Cycle #48 ===================
17-03-17 21:12:14.498 -07 000000626 INF: WaitCommand(30000) start
17-03-17 21:12:14.498 -07 000000012 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:12:14.498 -07 000000012 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:12:14.578 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.996267,
17-03-17 21:12:15.718 -07 000000012 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:12:15.718 -07 000000012 INF: LanePump: Xmit /1?\r
17-03-17 21:12:15.748 -07 000000012 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:12:15.748 -07 000000012 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:12:15.878 -07 000000012 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:12:15.918 -07 000000012 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:12:16.858 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:12:16.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=740, Total=1464. Warn if over 250 bubbles per interval.
17-03-17 21:12:18.258 -07 000000012 INF: LanePump: Xmit /1Q\r
17-03-17 21:12:18.288 -07 000000012 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:12:18.708 -07 000000012 INF: LanePump: Xmit /1Q\r
17-03-17 21:12:18.738 -07 000000012 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:12:18.738 -07 000000012 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 21:12:18.738 -07 000000012 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:12:18.738 -07 000000012 INF: ===================  ===================
17-03-17 21:12:19.948 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.003063,
17-03-17 21:12:21.858 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:12:21.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=740, Total=1464. Warn if over 250 bubbles per interval.
17-03-17 21:12:25.318 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.004458,
17-03-17 21:12:26.858 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:12:26.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=740, Total=1464. Warn if over 250 bubbles per interval.
17-03-17 21:12:30.698 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.988112,
17-03-17 21:12:31.858 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:12:31.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=740, Total=1464. Warn if over 250 bubbles per interval.
17-03-17 21:12:36.058 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.99219,
17-03-17 21:12:36.858 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:12:36.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=740, Total=1464. Warn if over 250 bubbles per interval.
17-03-17 21:12:41.428 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.005817,
17-03-17 21:12:41.858 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:12:41.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=740, Total=1464. Warn if over 250 bubbles per interval.
17-03-17 21:12:44.508 -07 000000626 INF: WaitCommand(30000) end
17-03-17 21:12:44.508 -07 000000610 INF: =================== Cycle #48, Flow Cell Temp 22° ===================
17-03-17 21:12:44.508 -07 000000610 INF: =================== Cycle #48, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 21:12:44.508 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 21:12:44.508 -07 000000626 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:12:44.518 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:12:44.518 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:12:44.518 -07 000000012 INF: FPGA: Recv TEC2EN 
17-03-17 21:12:44.528 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:12:44.528 -07 000000610 INF: =================== Cycle #48, Flow Cell Temp 22° ===================
17-03-17 21:12:44.528 -07 000000610 INF: =================== Cycle #48 ===================
17-03-17 21:12:44.528 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3) ===================
17-03-17 21:12:44.528 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:12:44.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:12:44.558 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:12:44.558 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:12:44.558 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:12:44.688 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:12:44.728 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:12:46.798 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.999021,
17-03-17 21:12:46.858 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:12:46.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=740, Total=1464. Warn if over 250 bubbles per interval.
17-03-17 21:12:47.858 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:12:47.888 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:12:48.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:12:48.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:12:48.758 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:12:48.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:12:48.788 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:12:48.788 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3) ===================
17-03-17 21:12:48.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:12:48.948 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:12:48.948 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:12:49.078 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:12:49.108 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:12:49.108 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:12:49.108 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:12:49.238 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:12:49.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:12:49.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:12:49.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:12:49.728 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:12:49.728 -07 000000610 INF: =================== Cycle #48 ===================
17-03-17 21:12:50.948 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 21:12:50.948 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 21:12:50.948 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:12:50.968 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:12:50.968 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 21:12:50.968 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 21:12:51.118 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:12:51.138 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:12:51.138 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:12:51.188 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:12:51.208 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:12:51.208 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:12:51.308 -07 000000610 INF: =================== Cycle #48, Pumping Reagent USM (2) ===================
17-03-17 21:12:51.308 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:12:51.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:12:51.338 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:12:51.338 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:12:51.338 -07 000000610 INF: =================== Cycle #48, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 21:12:51.468 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:12:51.508 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:12:51.858 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:12:51.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=740, Total=1464. Warn if over 250 bubbles per interval.
17-03-17 21:12:52.178 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.008536,
17-03-17 21:12:52.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:12:52.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:12:53.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:12:53.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:12:53.428 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:12:53.428 -07 000000610 INF: =================== Cycle #48, Pumping Reagent USM (2) ===================
17-03-17 21:12:53.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:12:53.588 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:12:53.588 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:12:53.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:12:53.748 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:12:53.748 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:12:53.748 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:12:53.878 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:12:53.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:12:54.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:12:54.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:12:54.368 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:12:54.368 -07 000000610 INF: =================== Cycle #48 ===================
17-03-17 21:12:55.588 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:12:55.588 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:12:55.588 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:12:55.608 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:12:55.608 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 21:12:55.608 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:12:55.758 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:12:55.778 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:12:55.778 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:12:55.828 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:12:55.848 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:12:55.848 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:12:55.948 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3) ===================
17-03-17 21:12:55.948 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:12:55.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:12:55.978 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:12:55.978 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:12:55.978 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:12:56.108 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:12:56.148 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:12:56.858 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 21:12:56.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:12:57.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:12:57.048 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:12:57.048 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:12:57.048 -07 000000610 INF: =================== Cycle #48, Pumping Reagent PR2 (3) ===================
17-03-17 21:12:57.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:12:57.208 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:12:57.208 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:12:57.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:12:57.368 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:12:57.368 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:12:57.368 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:12:57.498 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:12:57.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:12:57.538 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.997626,
17-03-17 21:12:57.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:12:57.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:12:57.988 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:12:57.988 -07 000000610 INF: =================== Cycle #48 ===================
17-03-17 21:12:57.988 -07 000000438 INF: WaitCommand(10000) start
17-03-17 21:12:57.988 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:12:57.988 -07 000000626 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:12:59.208 -07 000000626 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:12:59.208 -07 000000626 INF: LanePump: Xmit /1?\r
17-03-17 21:12:59.238 -07 000000626 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:12:59.238 -07 000000626 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:12:59.368 -07 000000626 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:12:59.408 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:13:00.938 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-17 21:13:00.968 -07 000000626 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:13:01.388 -07 000000626 INF: LanePump: Xmit /1Q\r
17-03-17 21:13:01.418 -07 000000626 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:13:01.418 -07 000000626 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 21:13:01.418 -07 000000626 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:13:01.418 -07 000000626 INF: ===================  ===================
17-03-17 21:13:01.858 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:13:01.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:13:02.908 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.988112,
17-03-17 21:13:06.858 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:13:06.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:13:07.998 -07 000000438 INF: WaitCommand(10000) end
17-03-17 21:13:07.998 -07 000000610 INF: =================== Cycle #48, Imaging ===================
17-03-17 21:13:07.998 -07 000000610 INF: Imaging Cycle 48: ScanTilesCommand Cycle 48 time start.
17-03-17 21:13:07.998 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 21:13:07.998 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:13:08.028 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:13:08.028 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 21:13:08.028 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 21:13:08.288 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.96762,
17-03-17 21:13:08.328 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:13:08.348 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:13:08.348 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:13:08.398 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:13:08.418 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:13:08.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:08.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:08.418 -07 000000480 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 21:13:08.418 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:08.418 -07 000000480 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 21:13:08.428 -07 000000626 INF: FPGA: Recv EXLED1ON 
17-03-17 21:13:08.428 -07 000000480 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:13:08.428 -07 000000480 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 21:13:08.428 -07 000000458 INF: FPGA: Recv EXLED1ADCR 23122
17-03-17 21:13:08.438 -07 000000480 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:08.438 -07 000000480 INF: RedLED: Using Red data: Photodiode ADC 23122 --> 7.4 mW (old method), or 205.0 mW (new method). Difference = 197.5 mW
17-03-17 21:13:08.438 -07 000000480 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 21:13:08.438 -07 000000012 INF: FPGA: Recv EXLED1OFF 
17-03-17 21:13:08.448 -07 000000480 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:08.448 -07 000000480 INF: RedLED: LED was on for 19 ms
17-03-17 21:13:08.448 -07 000000480 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 21:13:08.448 -07 000000480 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 21:13:08.448 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:08.448 -07 000000480 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 21:13:08.448 -07 000000429 INF: FPGA: Recv EXLED2ON 
17-03-17 21:13:08.458 -07 000000480 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:13:08.458 -07 000000480 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:13:08.458 -07 000000431 INF: FPGA: Recv EXLED1ADCR 2102
17-03-17 21:13:08.468 -07 000000480 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:08.468 -07 000000480 INF: GreenLED: Using Green data: Photodiode ADC 2102 --> 0.9 mW (old method), or 182.6 mW (new method). Difference = 181.7 mW
17-03-17 21:13:08.468 -07 000000480 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 21:13:08.468 -07 000000458 INF: FPGA: Recv EXLED2OFF 
17-03-17 21:13:08.478 -07 000000480 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:08.478 -07 000000480 INF: GreenLED: LED was on for 20 ms
17-03-17 21:13:08.478 -07 000000480 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 21:13:08.478 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:13:08.478 -07 000000429 INF: FPGA: Recv EMCUR 
17-03-17 21:13:08.488 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:13:08.488 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 21:13:08.988 -07 000000626 INF: FPGA: Recv EMOUT
17-03-17 21:13:08.988 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 21:13:08.988 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 21:13:08.988 -07 000000576 INF: FPGA: Recv EMCUR 
17-03-17 21:13:08.998 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:13:08.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:13:08.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38134765625, Z-Position -0.127685499125593. ------
17-03-17 21:13:08.998 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:08.998 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17950 mm
17-03-17 21:13:08.998 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:13:08.998 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:13:08.998 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 39211, sync = True, waitForSettling = False)
17-03-17 21:13:08.998 -07 000000480 INF: Z Motor: Moving to -0.179496 mm, started at -0.127685 mm, distance = -51.81 um
17-03-17 21:13:08.998 -07 000000012 INF: Y Motor: Moving to 59.9126 mm, started at 75.3813 mm, delta = -15.4687 mm
17-03-17 21:13:08.998 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:09.008 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:13:09.008 -07 000000480 INF: FPGA: Xmit ZDACW 39211\n [Z Motor]
17-03-17 21:13:09.008 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:13:09.018 -07 000000480 INF: FPGA: 'ZDACW 39211' command took 3 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:13:09.018 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:09.018 -07 000000429 INF: FPGA: Recv ZDACR 39211
17-03-17 21:13:09.028 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:09.028 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:09.028 -07 000000480 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 21:13:09.028 -07 000000415 INF: FPGA: Recv YRDPOS 154381
17-03-17 21:13:09.038 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:13:09.038 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 21:13:09.038 -07 000000012 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:09.038 -07 000000012 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 21:13:09.038 -07 000000012 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:13:09.048 -07 000000012 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:13:09.238 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:13:09.238 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 232 ms overall
17-03-17 21:13:10.728 -07 000000458 INF: FPGA: Recv YMVTO 122703 24777
17-03-17 21:13:10.728 -07 000000012 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1695 ms overall
17-03-17 21:13:10.728 -07 000000012 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:13:10.728 -07 000000012 INF: Y Motor: To move from 75.381 to 59.913 (-15.469 mm) should take 24750 steps, but required 24777 steps (15.486 mm). Slippage = 0.017 mm (0.00%).
17-03-17 21:13:10.728 -07 000000012 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1695 ms, distance = 15.469 mm, average velocity = 9.126 mm/sec
17-03-17 21:13:11.858 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:13:11.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:13:13.578 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:13.578 -07 000000382 INF: FPGA: Recv YRDPOS 122697
17-03-17 21:13:13.588 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:13.588 -07 000000012 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:13.608 -07 000000012 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:13:13.608 -07 000000012 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 21:13:13.608 -07 000000012 INF: Y Motor: Moved to 59.9106 after 4607 ms
17-03-17 21:13:13.608 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179496 mm (DAC = 39211)
17-03-17 21:13:13.608 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:13.618 -07 000000382 INF: FPGA: Recv ZSGSRD 37229
17-03-17 21:13:13.618 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:13:13.618 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:13.618 -07 000000458 INF: FPGA: Recv ZSGSRD 37238
17-03-17 21:13:13.628 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:13:13.628 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:13.628 -07 000000501 INF: FPGA: Recv ZSGSRD 37228
17-03-17 21:13:13.638 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:13.648 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.985358,
17-03-17 21:13:13.658 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:13.658 -07 000000501 INF: FPGA: Recv ZSGSRD 37225
17-03-17 21:13:13.668 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:13:13.678 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:13.678 -07 000000012 INF: FPGA: Recv ZSGSRD 37236
17-03-17 21:13:13.688 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:13:13.688 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:13.688 -07 000000458 INF: FPGA: Recv ZSGSRD 37228
17-03-17 21:13:13.698 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:13.708 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:13.708 -07 000000429 INF: FPGA: Recv ZSGSRD 37231
17-03-17 21:13:13.718 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:13:13.738 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:13.738 -07 000000501 INF: FPGA: Recv ZSGSRD 37230
17-03-17 21:13:13.748 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:13:13.748 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:13.748 -07 000000576 INF: FPGA: Recv ZSGSRD 37233
17-03-17 21:13:13.758 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:13.758 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:13.758 -07 000000431 INF: FPGA: Recv ZSGSRD 37230
17-03-17 21:13:13.768 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:13.768 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:13.768 -07 000000626 INF: FPGA: Recv ZPIEZORD 33736
17-03-17 21:13:13.778 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:13.778 -07 000000438 INF: Z Motor: Piezo is near 52.1 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.983 V. Piezo Error = -7.8 V.
17-03-17 21:13:13.778 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.5 um, Read 10 ADC samples: Avg = 37231 (-178.6 uncal um), Error = 0.9 uncal um, Median = 37230 (-178.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37225 (-178.6 uncal um), Max = 37238 (-178.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:13:13.778 -07 000000438 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37231, posNoise = 7, negNoise = 6
17-03-17 21:13:13.778 -07 000000438 INF: Z Motor: After move to -0.179496, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:13.778 -07 000000438 INF: Z Motor: Settle wait time = 4610 ms, measure time = 162 ms (allowed 150 ms), total time = 4772 ms
17-03-17 21:13:13.778 -07 000000438 INF: Z Motor: Warning: Actual position measuring time = 162 ms, longer than max expected time of 150 ms
17-03-17 21:13:13.778 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4776 ms
17-03-17 21:13:13.778 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:13:13.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:13.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:13.778 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:13.778 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:13.778 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:13:13.778 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:13.778 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:13:13.778 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:13:13.808 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-17 21:13:13.808 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:13:13.808 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:13:13.808 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:13:13.828 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:13:13.828 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 44 ms.
17-03-17 21:13:13.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:13:13.868 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:13:14.068 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:13:14.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:13:14.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:13:14.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) start.
17-03-17 21:13:14.108 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:13:14.108 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 21:13:14.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 21:13:14.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2334002848, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:13:14.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:14.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:13:14.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:13:14.308 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:14.308 -07 000000012 INF: Image SNR check: start
17-03-17 21:13:14.308 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:14.318 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:13:14.318 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:13:14.318 -07 000000012 INF: Image SNR check: pass  [peak (Max-Min)=62.00]
17-03-17 21:13:14.318 -07 000000012 INF: Autofocus start
17-03-17 21:13:14.318 -07 000000012 INF: MeasureProfile start
17-03-17 21:13:14.328 -07 000000012 INF: MeasureProfile done
17-03-17 21:13:14.328 -07 000000012 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:13:14.328 -07 000000012 INF: Autofocus finished
17-03-17 21:13:14.518 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:13:14.518 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:13:14.518 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.179503194261037. ----------
17-03-17 21:13:14.518 -07 000000610 INF: Cycle	48	Tile	1	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:13:14.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37744, sync = True, waitForSettling = True)
17-03-17 21:13:14.528 -07 000000610 INF: Z Motor: Moving to -0.172781 mm, started at -0.179503 mm, distance = 6.72 um
17-03-17 21:13:14.528 -07 000000610 INF: FPGA: Xmit ZDACW 37744\n [Z Motor]
17-03-17 21:13:14.528 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:13:14.538 -07 000000610 INF: FPGA: 'ZDACW 37744' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:13:14.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:14.538 -07 000000431 INF: FPGA: Recv ZDACR 37744
17-03-17 21:13:14.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:14.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:13:14.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:14.698 -07 000000626 INF: FPGA: Recv ZSGSRD 36180
17-03-17 21:13:14.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:14.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:14.708 -07 000000431 INF: FPGA: Recv ZSGSRD 36188
17-03-17 21:13:14.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:14.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:14.718 -07 000000382 INF: FPGA: Recv ZSGSRD 36189
17-03-17 21:13:14.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:14.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:14.728 -07 000000480 INF: FPGA: Recv ZSGSRD 36179
17-03-17 21:13:14.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:14.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:14.738 -07 000000431 INF: FPGA: Recv ZSGSRD 36190
17-03-17 21:13:14.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:14.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:14.748 -07 000000415 INF: FPGA: Recv ZSGSRD 36189
17-03-17 21:13:14.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:14.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:14.758 -07 000000626 INF: FPGA: Recv ZSGSRD 36186
17-03-17 21:13:14.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:14.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:14.768 -07 000000480 INF: FPGA: Recv ZSGSRD 36187
17-03-17 21:13:14.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:14.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:14.778 -07 000000429 INF: FPGA: Recv ZSGSRD 36186
17-03-17 21:13:14.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:14.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:14.788 -07 000000626 INF: FPGA: Recv ZSGSRD 36189
17-03-17 21:13:14.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:14.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:14.798 -07 000000431 INF: FPGA: Recv ZPIEZORD 32330
17-03-17 21:13:14.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:14.808 -07 000000610 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.759 V. Piezo Error = -8.5 V.
17-03-17 21:13:14.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36186 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36188 (-171.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36179 (-171.9 uncal um), Max = 36190 (-171.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:13:14.808 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36186, posNoise = 4, negNoise = 7
17-03-17 21:13:14.808 -07 000000610 INF: Z Motor: After move to -0.172781, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:14.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:13:14.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:14.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:14.808 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:14.808 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:14.808 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:13:14.808 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:13:14.808 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:14.808 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:13:14.808 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:14.808 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:13:14.808 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:13:14.808 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:13:14.818 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:13:14.818 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:13:14.828 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:13:14.828 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:13:14.838 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 21:13:14.838 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:13:14.838 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:13:14.838 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:13:14.848 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 21:13:14.848 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 21:13:14.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37921 150\n [Camera]
17-03-17 21:13:15.048 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:13:15.478 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:13:15.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:13:15.478 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:15.478 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:13:15.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:13:15.488 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:15.488 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:15.488 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2571421344, 0x0, 391868352) start.
17-03-17 21:13:15.488 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:15.488 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2606843608, 0x0, 418435064) start.
17-03-17 21:13:15.668 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37921 813
17-03-17 21:13:15.818 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:13:15.878 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2571421344, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:13:15.878 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:13:15.878 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:15.888 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2606843608, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:13:15.888 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:13:15.888 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:15.888 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 21:13:15.888 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 21:13:15.898 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:13:15.908 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 21:13:16.028 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:13:16.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:13:16.028 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:16.158 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:13:16.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:13:16.158 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:16.158 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:16.158 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:13:16.168 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:16.168 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 21:13:16.218 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:13:16.218 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:13:16.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37921 150' command took 2 ms to send, 1357 ms to get response, and 1369 ms overall
17-03-17 21:13:16.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:13:16.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172789892572897. ------
17-03-17 21:13:16.228 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:16.228 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17916 mm
17-03-17 21:13:16.228 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:13:16.228 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:13:16.228 -07 000000626 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 21:13:16.228 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 39137, sync = True, waitForSettling = False)
17-03-17 21:13:16.228 -07 000000438 INF: Z Motor: Moving to -0.179158 mm, started at -0.172790 mm, distance = -6.37 um
17-03-17 21:13:16.228 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:16.238 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:13:16.238 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:16.238 -07 000000501 INF: FPGA: Recv YRDPOS 122697
17-03-17 21:13:16.248 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:13:16.248 -07 000000626 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:16.248 -07 000000626 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:13:16.248 -07 000000626 INF: Y Motor: Moving 1331 steps2
17-03-17 21:13:16.248 -07 000000438 INF: FPGA: Xmit ZDACW 39137\n [Z Motor]
17-03-17 21:13:16.248 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:13:16.258 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:13:16.258 -07 000000438 INF: FPGA: 'ZDACW 39137' command took 4 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:13:16.268 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:13:16.278 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:16.278 -07 000000431 INF: FPGA: Recv ZDACR 39137
17-03-17 21:13:16.288 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:13:16.288 -07 000000438 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 21:13:16.458 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:13:16.458 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:13:16.558 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:13:16.558 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:13:16.558 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:16.558 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 21:13:16.558 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:13:16.558 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:16.568 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:16.568 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 537 ms.
17-03-17 21:13:16.568 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:16.578 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:13:16.638 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:13:16.638 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:13:16.668 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:16.678 -07 000000501 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:13:16.678 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:13:16.678 -07 000000626 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:16.678 -07 000000626 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:13:16.678 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.096 mm/sec
17-03-17 21:13:16.858 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:13:16.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:13:17.628 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:17.628 -07 000000431 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:13:17.638 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:17.638 -07 000000626 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:17.658 -07 000000626 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:13:17.658 -07 000000626 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:13:17.658 -07 000000626 INF: Y Motor: Moved to 60.7329 after 1427 ms (table move)
17-03-17 21:13:17.658 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179158 mm (DAC = 39137)
17-03-17 21:13:17.658 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:17.668 -07 000000382 INF: FPGA: Recv ZSGSRD 37181
17-03-17 21:13:17.668 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:13:17.668 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:17.668 -07 000000626 INF: FPGA: Recv ZSGSRD 37182
17-03-17 21:13:17.678 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:13:17.678 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:17.678 -07 000000431 INF: FPGA: Recv ZSGSRD 37171
17-03-17 21:13:17.688 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:17.688 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:17.688 -07 000000626 INF: FPGA: Recv ZSGSRD 37180
17-03-17 21:13:17.698 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:17.698 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:17.698 -07 000000431 INF: FPGA: Recv ZSGSRD 37173
17-03-17 21:13:17.708 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:17.708 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:17.708 -07 000000501 INF: FPGA: Recv ZSGSRD 37182
17-03-17 21:13:17.718 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:17.718 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:17.718 -07 000000431 INF: FPGA: Recv ZSGSRD 37179
17-03-17 21:13:17.728 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:17.728 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:17.728 -07 000000626 INF: FPGA: Recv ZSGSRD 37179
17-03-17 21:13:17.738 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:17.738 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:17.738 -07 000000501 INF: FPGA: Recv ZSGSRD 37172
17-03-17 21:13:17.748 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:17.748 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:17.748 -07 000000626 INF: FPGA: Recv ZSGSRD 37177
17-03-17 21:13:17.758 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:17.758 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:17.758 -07 000000012 INF: FPGA: Recv ZPIEZORD 33671
17-03-17 21:13:17.768 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:17.768 -07 000000608 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.972 V. Piezo Error = -7.8 V.
17-03-17 21:13:17.768 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.2 um, Read 10 ADC samples: Avg = 37178 (-178.3 uncal um), Error = 0.9 uncal um, Median = 37179 (-178.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37171 (-178.2 uncal um), Max = 37182 (-178.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:13:17.768 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37178, posNoise = 4, negNoise = 7
17-03-17 21:13:17.768 -07 000000608 INF: Z Motor: After move to -0.179158, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:17.768 -07 000000608 INF: Z Motor: Settle wait time = 1431 ms, measure time = 103 ms (allowed 150 ms), total time = 1534 ms
17-03-17 21:13:17.768 -07 000000608 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:13:17.818 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 21:13:17.818 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:13:17.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:17.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:17.818 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:17.818 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:17.818 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:13:17.818 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:17.828 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:17.828 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:13:17.828 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:13:17.828 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:13:17.838 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:13:17.838 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:13:17.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:13:17.888 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:13:18.088 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:13:18.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:13:18.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:13:18.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-17 21:13:18.128 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:13:18.128 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:13:18.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 21:13:18.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:13:18.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:18.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:13:18.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 21:13:18.228 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:18.228 -07 000000429 INF: Autofocus start
17-03-17 21:13:18.228 -07 000000429 INF: MeasureProfile start
17-03-17 21:13:18.228 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:18.238 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:13:18.238 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:13:18.238 -07 000000429 INF: MeasureProfile done
17-03-17 21:13:18.238 -07 000000429 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:13:18.238 -07 000000429 INF: Autofocus finished
17-03-17 21:13:18.438 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:13:18.438 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:13:18.438 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.179162711017524. ----------
17-03-17 21:13:18.438 -07 000000610 INF: Cycle	48	Tile	2	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:13:18.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37652, sync = True, waitForSettling = True)
17-03-17 21:13:18.448 -07 000000610 INF: Z Motor: Moving to -0.172360 mm, started at -0.179163 mm, distance = 6.80 um
17-03-17 21:13:18.448 -07 000000610 INF: FPGA: Xmit ZDACW 37652\n [Z Motor]
17-03-17 21:13:18.448 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:13:18.458 -07 000000610 INF: FPGA: 'ZDACW 37652' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:13:18.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:18.458 -07 000000512 INF: FPGA: Recv ZDACR 37652
17-03-17 21:13:18.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:18.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:13:18.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:18.618 -07 000000429 INF: FPGA: Recv ZSGSRD 36117
17-03-17 21:13:18.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:18.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:18.628 -07 000000438 INF: FPGA: Recv ZSGSRD 36122
17-03-17 21:13:18.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:18.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:18.638 -07 000000012 INF: FPGA: Recv ZSGSRD 36122
17-03-17 21:13:18.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:18.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:18.648 -07 000000480 INF: FPGA: Recv ZSGSRD 36120
17-03-17 21:13:18.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:18.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:18.658 -07 000000012 INF: FPGA: Recv ZSGSRD 36121
17-03-17 21:13:18.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:18.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:18.668 -07 000000438 INF: FPGA: Recv ZSGSRD 36124
17-03-17 21:13:18.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:18.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:18.678 -07 000000458 INF: FPGA: Recv ZSGSRD 36120
17-03-17 21:13:18.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:18.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:18.688 -07 000000012 INF: FPGA: Recv ZSGSRD 36120
17-03-17 21:13:18.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:18.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:18.698 -07 000000429 INF: FPGA: Recv ZSGSRD 36121
17-03-17 21:13:18.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:18.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:18.708 -07 000000012 INF: FPGA: Recv ZSGSRD 36121
17-03-17 21:13:18.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:18.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:18.718 -07 000000512 INF: FPGA: Recv ZPIEZORD 32257
17-03-17 21:13:18.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:18.728 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.745 V. Piezo Error = -8.5 V.
17-03-17 21:13:18.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36121 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36121 (-171.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36117 (-171.5 uncal um), Max = 36124 (-171.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:13:18.728 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36121, posNoise = 3, negNoise = 4
17-03-17 21:13:18.728 -07 000000610 INF: Z Motor: After move to -0.172360, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:18.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:13:18.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:18.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:18.728 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:18.728 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:18.728 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:13:18.728 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:18.728 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:13:18.728 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:13:18.728 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:18.728 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:13:18.728 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:13:18.728 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:13:18.738 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:13:18.738 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:13:18.738 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:13:18.738 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:13:18.748 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:13:18.748 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:13:18.758 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 21:13:18.758 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:13:18.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37829 150\n [Camera]
17-03-17 21:13:18.958 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:13:19.058 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.986717,
17-03-17 21:13:19.378 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:13:19.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:13:19.388 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:19.388 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:19.388 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2348678928, 0x0, 391868352) start.
17-03-17 21:13:19.388 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:13:19.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:13:19.388 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:19.388 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:19.388 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:13:19.578 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37829 813
17-03-17 21:13:19.728 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:13:19.788 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2348678928, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 21:13:19.788 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:13:19.788 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:19.788 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 21:13:19.788 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:13:19.788 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:19.788 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:19.788 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 21:13:19.798 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:19.798 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:13:19.928 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:13:19.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:13:19.928 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:20.048 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:13:20.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:13:20.048 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:20.048 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:20.048 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2313256664, 0x0, 418435064) start.
17-03-17 21:13:20.048 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:20.048 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:13:20.118 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:13:20.128 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:13:20.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37829 150' command took 2 ms to send, 1360 ms to get response, and 1369 ms overall
17-03-17 21:13:20.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:13:20.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.172372318783683. ------
17-03-17 21:13:20.128 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:20.128 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17851 mm
17-03-17 21:13:20.128 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:13:20.128 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:13:20.128 -07 000000415 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 21:13:20.128 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38996, sync = True, waitForSettling = False)
17-03-17 21:13:20.128 -07 000000431 INF: Z Motor: Moving to -0.178512 mm, started at -0.172372 mm, distance = -6.14 um
17-03-17 21:13:20.128 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:20.138 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:13:20.138 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:20.138 -07 000000438 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:13:20.148 -07 000000431 INF: FPGA: Xmit ZDACW 38996\n [Z Motor]
17-03-17 21:13:20.148 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:13:20.148 -07 000000415 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:20.148 -07 000000415 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:13:20.148 -07 000000415 INF: Y Motor: Moving 1344 steps-20
17-03-17 21:13:20.148 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:13:20.158 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:13:20.158 -07 000000431 INF: FPGA: 'ZDACW 38996' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 21:13:20.168 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:13:20.178 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:20.178 -07 000000458 INF: FPGA: Recv ZDACR 38996
17-03-17 21:13:20.188 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:13:20.188 -07 000000431 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 21:13:20.358 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:13:20.358 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:13:20.448 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:13:20.448 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:13:20.448 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:20.448 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2313256664, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:13:20.448 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:13:20.448 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:20.448 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:20.448 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 21:13:20.448 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:20.458 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 21:13:20.538 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:13:20.538 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:13:20.578 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:20.578 -07 000000501 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:13:20.588 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:13:20.588 -07 000000415 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:20.588 -07 000000415 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:13:20.588 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-17 21:13:21.538 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:21.538 -07 000000431 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:13:21.548 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:21.548 -07 000000415 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:21.568 -07 000000415 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:13:21.568 -07 000000415 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:13:21.568 -07 000000415 INF: Y Motor: Moved to 61.5635 after 1435 ms (table move)
17-03-17 21:13:21.568 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178512 mm (DAC = 38996)
17-03-17 21:13:21.568 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:21.568 -07 000000431 INF: FPGA: Recv ZSGSRD 37084
17-03-17 21:13:21.578 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:13:21.578 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:21.578 -07 000000429 INF: FPGA: Recv ZSGSRD 37078
17-03-17 21:13:21.588 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:21.588 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:21.588 -07 000000458 INF: FPGA: Recv ZSGSRD 37073
17-03-17 21:13:21.598 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:21.598 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:21.598 -07 000000438 INF: FPGA: Recv ZSGSRD 37075
17-03-17 21:13:21.608 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:21.608 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:21.608 -07 000000475 INF: FPGA: Recv ZSGSRD 37085
17-03-17 21:13:21.618 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:21.618 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:21.618 -07 000000576 INF: FPGA: Recv ZSGSRD 37081
17-03-17 21:13:21.628 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:21.628 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:21.628 -07 000000458 INF: FPGA: Recv ZSGSRD 37083
17-03-17 21:13:21.638 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:21.638 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:21.638 -07 000000438 INF: FPGA: Recv ZSGSRD 37077
17-03-17 21:13:21.648 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:21.648 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:21.648 -07 000000475 INF: FPGA: Recv ZSGSRD 37072
17-03-17 21:13:21.658 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:21.658 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:21.658 -07 000000608 INF: FPGA: Recv ZSGSRD 37077
17-03-17 21:13:21.668 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:21.668 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:21.668 -07 000000480 INF: FPGA: Recv ZPIEZORD 33521
17-03-17 21:13:21.678 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:21.678 -07 000000512 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.950 V. Piezo Error = -7.9 V.
17-03-17 21:13:21.678 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37078 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37078 (-177.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37072 (-177.6 uncal um), Max = 37085 (-177.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:13:21.678 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37078, posNoise = 7, negNoise = 6
17-03-17 21:13:21.678 -07 000000512 INF: Z Motor: After move to -0.178512, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:21.678 -07 000000512 INF: Z Motor: Settle wait time = 1438 ms, measure time = 104 ms (allowed 150 ms), total time = 1542 ms
17-03-17 21:13:21.678 -07 000000512 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:13:21.728 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 21:13:21.728 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:13:21.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:21.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:21.728 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:21.728 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:21.728 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:13:21.728 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:21.738 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:21.738 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:13:21.738 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:13:21.738 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:13:21.748 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:13:21.748 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:13:21.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:13:21.798 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:13:21.858 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:13:21.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:13:21.998 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:13:21.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:13:21.998 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:13:21.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-17 21:13:22.038 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:13:22.038 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 21:13:22.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 21:13:22.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 21:13:22.118 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:22.118 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:13:22.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 21:13:22.138 -07 000000608 INF: Autofocus start
17-03-17 21:13:22.138 -07 000000608 INF: MeasureProfile start
17-03-17 21:13:22.138 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:22.138 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:22.148 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:13:22.148 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:13:22.148 -07 000000608 INF: MeasureProfile done
17-03-17 21:13:22.148 -07 000000608 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:13:22.148 -07 000000608 INF: Autofocus finished
17-03-17 21:13:22.348 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:13:22.348 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:13:22.348 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.178520289803348. ----------
17-03-17 21:13:22.348 -07 000000610 INF: Cycle	48	Tile	3	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:13:22.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37529, sync = True, waitForSettling = True)
17-03-17 21:13:22.358 -07 000000610 INF: Z Motor: Moving to -0.171797 mm, started at -0.178520 mm, distance = 6.72 um
17-03-17 21:13:22.358 -07 000000610 INF: FPGA: Xmit ZDACW 37529\n [Z Motor]
17-03-17 21:13:22.358 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:13:22.368 -07 000000610 INF: FPGA: 'ZDACW 37529' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:13:22.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:22.368 -07 000000012 INF: FPGA: Recv ZDACR 37529
17-03-17 21:13:22.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:22.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:13:22.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:22.528 -07 000000424 INF: FPGA: Recv ZSGSRD 36035
17-03-17 21:13:22.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:22.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:22.538 -07 000000512 INF: FPGA: Recv ZSGSRD 36035
17-03-17 21:13:22.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:22.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:22.548 -07 000000576 INF: FPGA: Recv ZSGSRD 36031
17-03-17 21:13:22.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:22.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:22.558 -07 000000012 INF: FPGA: Recv ZSGSRD 36028
17-03-17 21:13:22.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:22.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:22.568 -07 000000415 INF: FPGA: Recv ZSGSRD 36034
17-03-17 21:13:22.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:22.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:22.578 -07 000000626 INF: FPGA: Recv ZSGSRD 36040
17-03-17 21:13:22.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:22.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:22.588 -07 000000424 INF: FPGA: Recv ZSGSRD 36037
17-03-17 21:13:22.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:22.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:22.598 -07 000000480 INF: FPGA: Recv ZSGSRD 36031
17-03-17 21:13:22.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:22.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:22.608 -07 000000431 INF: FPGA: Recv ZSGSRD 36033
17-03-17 21:13:22.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:22.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:22.618 -07 000000626 INF: FPGA: Recv ZSGSRD 36033
17-03-17 21:13:22.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:22.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:22.628 -07 000000415 INF: FPGA: Recv ZPIEZORD 32135
17-03-17 21:13:22.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:22.638 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.727 V. Piezo Error = -8.6 V.
17-03-17 21:13:22.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36034 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36034 (-170.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36028 (-170.9 uncal um), Max = 36040 (-171.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:13:22.638 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36034, posNoise = 6, negNoise = 6
17-03-17 21:13:22.638 -07 000000610 INF: Z Motor: After move to -0.171797, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:22.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:13:22.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:22.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:22.638 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:22.638 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:22.638 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:13:22.638 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:13:22.638 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:13:22.638 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:22.638 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:13:22.638 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:13:22.638 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:22.638 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:13:22.638 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:13:22.638 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:13:22.638 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:13:22.638 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:13:22.648 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:13:22.648 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:13:22.648 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:13:22.648 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:13:22.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37706 150\n [Camera]
17-03-17 21:13:22.858 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:13:23.288 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:13:23.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:13:23.288 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:23.288 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:23.288 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2348678928, 0x0, 391868352) start.
17-03-17 21:13:23.288 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:13:23.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:13:23.288 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:23.288 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:23.288 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:13:23.478 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37706 813
17-03-17 21:13:23.628 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:13:23.658 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:13:23.658 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:13:23.658 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:23.668 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2348678928, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:13:23.668 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:13:23.668 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:23.668 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:23.668 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:13:23.668 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:13:23.678 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:13:23.838 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:13:23.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:13:23.838 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:23.948 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:13:23.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:13:23.948 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:23.948 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:23.948 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:13:23.958 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:23.958 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:13:24.028 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:13:24.028 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:13:24.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37706 150' command took 2 ms to send, 1362 ms to get response, and 1368 ms overall
17-03-17 21:13:24.028 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:13:24.028 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.171813412327349. ------
17-03-17 21:13:24.028 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17810 mm
17-03-17 21:13:24.028 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:13:24.028 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:24.038 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:24.038 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:13:24.038 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:13:24.038 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:13:24.038 -07 000000512 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 21:13:24.038 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38906, sync = True, waitForSettling = False)
17-03-17 21:13:24.038 -07 000000012 INF: Z Motor: Moving to -0.178100 mm, started at -0.171813 mm, distance = -6.29 um
17-03-17 21:13:24.048 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:24.048 -07 000000429 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:13:24.058 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:13:24.058 -07 000000012 INF: FPGA: Xmit ZDACW 38906\n [Z Motor]
17-03-17 21:13:24.058 -07 000000512 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:24.058 -07 000000512 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:13:24.058 -07 000000512 INF: Y Motor: Moving 1343 steps-19
17-03-17 21:13:24.058 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:13:24.068 -07 000000012 INF: FPGA: 'ZDACW 38906' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:13:24.068 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:24.068 -07 000000547 INF: FPGA: Recv ZDACR 38906
17-03-17 21:13:24.078 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:24.078 -07 000000012 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 21:13:24.078 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:13:24.238 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:13:24.238 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 21:13:24.358 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:13:24.358 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:13:24.358 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:24.358 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 21:13:24.358 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:13:24.358 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:24.358 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:13:24.358 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-17 21:13:24.358 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:13:24.368 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 21:13:24.418 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.016692,
17-03-17 21:13:24.448 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 21:13:24.448 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 21:13:24.488 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:24.498 -07 000000501 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:13:24.498 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:13:24.498 -07 000000512 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:24.498 -07 000000512 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 21:13:24.498 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.839 mm, average velocity = 2.119 mm/sec
17-03-17 21:13:25.448 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:25.448 -07 000000475 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:13:25.458 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:25.458 -07 000000512 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:25.478 -07 000000512 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:13:25.478 -07 000000512 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:13:25.478 -07 000000512 INF: Y Motor: Moved to 62.3950 after 1440 ms (table move)
17-03-17 21:13:25.478 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178100 mm (DAC = 38906)
17-03-17 21:13:25.478 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:25.478 -07 000000459 INF: FPGA: Recv ZSGSRD 37019
17-03-17 21:13:25.488 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:13:25.488 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:25.488 -07 000000569 INF: FPGA: Recv ZSGSRD 37024
17-03-17 21:13:25.498 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:25.498 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:25.498 -07 000000480 INF: FPGA: Recv ZSGSRD 37012
17-03-17 21:13:25.508 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:25.508 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:25.508 -07 000000512 INF: FPGA: Recv ZSGSRD 37015
17-03-17 21:13:25.518 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:25.518 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:25.518 -07 000000459 INF: FPGA: Recv ZSGSRD 37012
17-03-17 21:13:25.528 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:25.528 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:25.528 -07 000000424 INF: FPGA: Recv ZSGSRD 37015
17-03-17 21:13:25.538 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:25.538 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:25.538 -07 000000501 INF: FPGA: Recv ZSGSRD 37006
17-03-17 21:13:25.548 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:25.548 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:25.548 -07 000000547 INF: FPGA: Recv ZSGSRD 37003
17-03-17 21:13:25.558 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:25.558 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:25.558 -07 000000012 INF: FPGA: Recv ZSGSRD 37023
17-03-17 21:13:25.568 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:25.568 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:25.568 -07 000000424 INF: FPGA: Recv ZSGSRD 37016
17-03-17 21:13:25.578 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:25.578 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:25.578 -07 000000512 INF: FPGA: Recv ZPIEZORD 33464
17-03-17 21:13:25.588 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:25.588 -07 000000576 INF: Z Motor: Piezo is near 51.5 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.937 V. Piezo Error = -7.9 V.
17-03-17 21:13:25.588 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37014 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37015 (-177.2 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 37003 (-177.1 uncal um), Max = 37024 (-177.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 21:13:25.588 -07 000000576 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37014, posNoise = 10, negNoise = 11
17-03-17 21:13:25.588 -07 000000576 INF: Z Motor: After move to -0.178100, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:25.588 -07 000000576 INF: Z Motor: Settle wait time = 1443 ms, measure time = 105 ms (allowed 150 ms), total time = 1548 ms
17-03-17 21:13:25.588 -07 000000576 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:13:25.638 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 21:13:25.638 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:13:25.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:25.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:25.638 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:25.638 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:25.638 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:13:25.638 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:25.638 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:25.638 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:13:25.648 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:13:25.648 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:13:25.658 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:13:25.658 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:13:25.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:13:25.708 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:13:25.908 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:13:25.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:13:25.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:13:25.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) start.
17-03-17 21:13:25.948 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:13:25.948 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 21:13:25.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:13:26.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 21:13:26.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:26.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:13:26.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 21:13:26.048 -07 000000431 INF: Autofocus start
17-03-17 21:13:26.048 -07 000000431 INF: MeasureProfile start
17-03-17 21:13:26.048 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:26.048 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:26.058 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:13:26.058 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:13:26.068 -07 000000431 INF: MeasureProfile done
17-03-17 21:13:26.068 -07 000000431 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 21:13:26.068 -07 000000431 INF: Autofocus finished
17-03-17 21:13:26.258 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:13:26.258 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:13:26.258 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.178109140226275. ----------
17-03-17 21:13:26.258 -07 000000610 INF: Cycle	48	Tile	4	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:13:26.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37386, sync = True, waitForSettling = True)
17-03-17 21:13:26.268 -07 000000610 INF: Z Motor: Moving to -0.171142 mm, started at -0.178109 mm, distance = 6.97 um
17-03-17 21:13:26.268 -07 000000610 INF: FPGA: Xmit ZDACW 37386\n [Z Motor]
17-03-17 21:13:26.268 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:13:26.278 -07 000000610 INF: FPGA: 'ZDACW 37386' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:26.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:26.278 -07 000000459 INF: FPGA: Recv ZDACR 37386
17-03-17 21:13:26.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:26.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:13:26.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:26.438 -07 000000512 INF: FPGA: Recv ZSGSRD 35932
17-03-17 21:13:26.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:26.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:26.448 -07 000000576 INF: FPGA: Recv ZSGSRD 35935
17-03-17 21:13:26.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:26.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:26.458 -07 000000458 INF: FPGA: Recv ZSGSRD 35931
17-03-17 21:13:26.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:26.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:26.468 -07 000000459 INF: FPGA: Recv ZSGSRD 35933
17-03-17 21:13:26.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:26.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:26.478 -07 000000424 INF: FPGA: Recv ZSGSRD 35932
17-03-17 21:13:26.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:26.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:26.488 -07 000000512 INF: FPGA: Recv ZSGSRD 35931
17-03-17 21:13:26.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:26.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:26.498 -07 000000382 INF: FPGA: Recv ZSGSRD 35931
17-03-17 21:13:26.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:26.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:26.508 -07 000000458 INF: FPGA: Recv ZSGSRD 35928
17-03-17 21:13:26.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:26.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:26.518 -07 000000459 INF: FPGA: Recv ZSGSRD 35935
17-03-17 21:13:26.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:26.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:26.528 -07 000000626 INF: FPGA: Recv ZSGSRD 35934
17-03-17 21:13:26.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:26.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:26.538 -07 000000480 INF: FPGA: Recv ZPIEZORD 32013
17-03-17 21:13:26.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:26.548 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.705 V. Piezo Error = -8.7 V.
17-03-17 21:13:26.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35932 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35932 (-170.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35928 (-170.3 uncal um), Max = 35935 (-170.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:13:26.548 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35932, posNoise = 3, negNoise = 4
17-03-17 21:13:26.548 -07 000000610 INF: Z Motor: After move to -0.171142, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:26.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:13:26.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:26.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:26.548 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:26.548 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:26.548 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:13:26.548 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:13:26.548 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:13:26.548 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:26.548 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:13:26.548 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:13:26.548 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:13:26.548 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:13:26.558 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:13:26.558 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:13:26.558 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:13:26.558 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:13:26.568 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 21:13:26.568 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 21:13:26.568 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 21:13:26.568 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:13:26.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37562 150\n [Camera]
17-03-17 21:13:26.768 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:13:26.858 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:13:26.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:13:27.198 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:13:27.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:13:27.198 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:27.198 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:27.198 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 21:13:27.198 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:13:27.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:13:27.208 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:27.208 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:27.208 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 21:13:27.388 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37562 813
17-03-17 21:13:27.538 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:13:27.578 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:13:27.578 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:13:27.578 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:27.578 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:13:27.578 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:13:27.578 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:27.578 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:27.578 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:13:27.588 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:27.588 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:13:27.748 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:13:27.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:13:27.748 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:27.858 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:13:27.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:13:27.858 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:27.858 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:27.858 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:13:27.868 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:27.868 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:13:27.938 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:13:27.938 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:13:27.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37562 150' command took 2 ms to send, 1366 ms to get response, and 1369 ms overall
17-03-17 21:13:27.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:13:27.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.17115814268889. ------
17-03-17 21:13:27.948 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:27.948 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17769 mm
17-03-17 21:13:27.948 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:13:27.948 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:13:27.948 -07 000000012 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 21:13:27.948 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 38817, sync = True, waitForSettling = False)
17-03-17 21:13:27.948 -07 000000458 INF: Z Motor: Moving to -0.177693 mm, started at -0.171158 mm, distance = -6.53 um
17-03-17 21:13:27.948 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:27.958 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:27.958 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:27.958 -07 000000424 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:13:27.968 -07 000000458 INF: FPGA: Xmit ZDACW 38817\n [Z Motor]
17-03-17 21:13:27.968 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:13:27.968 -07 000000012 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:27.968 -07 000000012 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:13:27.968 -07 000000012 INF: Y Motor: Moving 1340 steps-16
17-03-17 21:13:27.968 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:13:27.978 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:13:27.978 -07 000000458 INF: FPGA: 'ZDACW 38817' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:13:27.988 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:13:27.998 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:27.998 -07 000000547 INF: FPGA: Recv ZDACR 38817
17-03-17 21:13:28.008 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:13:28.008 -07 000000458 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 21:13:28.178 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:13:28.178 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:13:28.258 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:13:28.258 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:13:28.258 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:28.258 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 21:13:28.258 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:13:28.258 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:28.258 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:28.258 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 21:13:28.268 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:28.268 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 21:13:28.358 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:13:28.358 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:13:28.398 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:28.408 -07 000000569 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:13:28.408 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:13:28.408 -07 000000012 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:28.408 -07 000000012 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:13:28.408 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 21:13:29.358 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:29.358 -07 000000382 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:13:29.368 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:29.368 -07 000000012 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:29.388 -07 000000012 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:13:29.388 -07 000000012 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:13:29.388 -07 000000012 INF: Y Motor: Moved to 63.2236 after 1440 ms (table move)
17-03-17 21:13:29.388 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177693 mm (DAC = 38817)
17-03-17 21:13:29.388 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:29.398 -07 000000569 INF: FPGA: Recv ZSGSRD 36960
17-03-17 21:13:29.398 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:13:29.398 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:29.398 -07 000000382 INF: FPGA: Recv ZSGSRD 36947
17-03-17 21:13:29.408 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:29.408 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:29.408 -07 000000576 INF: FPGA: Recv ZSGSRD 36951
17-03-17 21:13:29.418 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:29.418 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:29.418 -07 000000012 INF: FPGA: Recv ZSGSRD 36954
17-03-17 21:13:29.428 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:29.428 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:29.428 -07 000000547 INF: FPGA: Recv ZSGSRD 36952
17-03-17 21:13:29.438 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:29.438 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:29.438 -07 000000459 INF: FPGA: Recv ZSGSRD 36958
17-03-17 21:13:29.448 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:29.448 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:29.448 -07 000000480 INF: FPGA: Recv ZSGSRD 36954
17-03-17 21:13:29.458 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:29.458 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:29.458 -07 000000608 INF: FPGA: Recv ZSGSRD 36947
17-03-17 21:13:29.468 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:29.478 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:29.478 -07 000000626 INF: FPGA: Recv ZSGSRD 36945
17-03-17 21:13:29.488 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:13:29.488 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:29.488 -07 000000475 INF: FPGA: Recv ZSGSRD 36953
17-03-17 21:13:29.498 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:29.498 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:29.498 -07 000000012 INF: FPGA: Recv ZPIEZORD 33362
17-03-17 21:13:29.508 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:29.508 -07 000000512 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.923 V. Piezo Error = -8.0 V.
17-03-17 21:13:29.508 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36952 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36952 (-176.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36945 (-176.8 uncal um), Max = 36960 (-176.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:13:29.508 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36952, posNoise = 8, negNoise = 7
17-03-17 21:13:29.508 -07 000000512 INF: Z Motor: After move to -0.177693, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:29.508 -07 000000512 INF: Z Motor: Settle wait time = 1443 ms, measure time = 113 ms (allowed 150 ms), total time = 1556 ms
17-03-17 21:13:29.508 -07 000000512 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-17 21:13:29.548 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 21:13:29.548 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:13:29.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:29.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:29.548 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:29.548 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:29.548 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:13:29.548 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:29.548 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:29.548 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:13:29.558 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:13:29.558 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:13:29.568 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:13:29.568 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:13:29.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:13:29.618 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 21:13:29.788 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.031682,
17-03-17 21:13:29.818 -07 000000626 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 21:13:29.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 21:13:29.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:13:29.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 21:13:29.858 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:13:29.858 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 21:13:29.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 21:13:29.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:13:29.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:29.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:13:29.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:13:29.958 -07 000000480 INF: Autofocus start
17-03-17 21:13:29.958 -07 000000480 INF: MeasureProfile start
17-03-17 21:13:29.958 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:29.958 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:29.968 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:13:29.968 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:13:29.968 -07 000000480 INF: MeasureProfile done
17-03-17 21:13:29.968 -07 000000480 INF: X=48  Z correction [um]=0.1739867
17-03-17 21:13:29.968 -07 000000480 INF: Autofocus finished
17-03-17 21:13:30.168 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:13:30.168 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:13:30.168 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177710839073486. ----------
17-03-17 21:13:30.168 -07 000000610 INF: Cycle	48	Tile	5	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:13:30.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37368, sync = True, waitForSettling = True)
17-03-17 21:13:30.178 -07 000000610 INF: Z Motor: Moving to -0.171060 mm, started at -0.177711 mm, distance = 6.65 um
17-03-17 21:13:30.178 -07 000000610 INF: FPGA: Xmit ZDACW 37368\n [Z Motor]
17-03-17 21:13:30.178 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:13:30.188 -07 000000610 INF: FPGA: 'ZDACW 37368' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:30.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:30.188 -07 000000429 INF: FPGA: Recv ZDACR 37368
17-03-17 21:13:30.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:30.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:13:30.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:30.348 -07 000000438 INF: FPGA: Recv ZSGSRD 35914
17-03-17 21:13:30.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:30.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:30.358 -07 000000547 INF: FPGA: Recv ZSGSRD 35922
17-03-17 21:13:30.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:30.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:30.368 -07 000000012 INF: FPGA: Recv ZSGSRD 35918
17-03-17 21:13:30.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:30.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:30.378 -07 000000608 INF: FPGA: Recv ZSGSRD 35915
17-03-17 21:13:30.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:30.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:30.388 -07 000000458 INF: FPGA: Recv ZSGSRD 35926
17-03-17 21:13:30.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:30.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:30.398 -07 000000438 INF: FPGA: Recv ZSGSRD 35913
17-03-17 21:13:30.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:30.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:30.408 -07 000000547 INF: FPGA: Recv ZSGSRD 35920
17-03-17 21:13:30.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:30.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:30.418 -07 000000012 INF: FPGA: Recv ZSGSRD 35918
17-03-17 21:13:30.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:30.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:30.428 -07 000000424 INF: FPGA: Recv ZSGSRD 35915
17-03-17 21:13:30.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:30.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:30.438 -07 000000475 INF: FPGA: Recv ZSGSRD 35920
17-03-17 21:13:30.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:30.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:30.448 -07 000000382 INF: FPGA: Recv ZPIEZORD 31953
17-03-17 21:13:30.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:30.458 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.702 V. Piezo Error = -8.8 V.
17-03-17 21:13:30.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35918 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35918 (-170.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35913 (-170.2 uncal um), Max = 35926 (-170.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:13:30.458 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35918, posNoise = 8, negNoise = 5
17-03-17 21:13:30.458 -07 000000610 INF: Z Motor: After move to -0.171060, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:30.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:13:30.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:30.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:30.458 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:30.458 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:30.458 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:13:30.458 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:13:30.458 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:13:30.458 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:30.458 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:13:30.458 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:13:30.458 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:30.458 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:13:30.458 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:13:30.458 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:13:30.458 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:13:30.458 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:13:30.478 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:13:30.478 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:13:30.478 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 21:13:30.478 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:13:30.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37545 150\n [Camera]
17-03-17 21:13:30.678 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:13:31.108 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:13:31.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:13:31.108 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:31.108 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:31.108 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 21:13:31.108 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:13:31.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:13:31.108 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:31.108 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:31.108 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 21:13:31.298 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37545 813
17-03-17 21:13:31.448 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:13:31.498 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 21:13:31.498 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:13:31.498 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:31.498 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 21:13:31.498 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:13:31.498 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:31.498 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:13:31.498 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:13:31.508 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:13:31.518 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:13:31.648 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:13:31.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:13:31.658 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:31.768 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:13:31.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:13:31.768 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:31.768 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:31.768 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:13:31.778 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:31.778 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:13:31.848 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:13:31.848 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:13:31.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37545 150' command took 2 ms to send, 1361 ms to get response, and 1368 ms overall
17-03-17 21:13:31.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:13:31.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.171068203718905. ------
17-03-17 21:13:31.848 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17747 mm
17-03-17 21:13:31.848 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:13:31.848 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:31.858 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:13:31.858 -07 000000458 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 21:13:31.858 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38769, sync = True, waitForSettling = False)
17-03-17 21:13:31.858 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:31.858 -07 000000480 INF: Z Motor: Moving to -0.177473 mm, started at -0.171068 mm, distance = -6.40 um
17-03-17 21:13:31.858 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:13:31.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:13:31.858 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:31.858 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 21:13:31.858 -07 000000547 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:13:31.868 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:13:31.868 -07 000000458 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:31.868 -07 000000458 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:13:31.868 -07 000000458 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:13:31.868 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:13:31.878 -07 000000480 INF: FPGA: Xmit ZDACW 38769\n [Z Motor]
17-03-17 21:13:31.878 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:13:31.888 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:13:31.888 -07 000000480 INF: FPGA: 'ZDACW 38769' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:13:31.898 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:31.898 -07 000000415 INF: FPGA: Recv ZDACR 38769
17-03-17 21:13:31.908 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:13:31.908 -07 000000480 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:13:32.068 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:13:32.068 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 208 ms overall
17-03-17 21:13:32.148 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:13:32.148 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:13:32.148 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:32.158 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:13:32.158 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:13:32.158 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:32.158 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:13:32.158 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:13:32.158 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-17 21:13:32.158 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:13:32.258 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 21:13:32.258 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:13:32.298 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:32.308 -07 000000438 INF: FPGA: Recv YRDPOS 131187
17-03-17 21:13:32.308 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 21:13:32.308 -07 000000458 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:32.308 -07 000000458 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 21:13:32.308 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 21:13:33.258 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:33.258 -07 000000569 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:13:33.268 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:33.268 -07 000000458 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:33.288 -07 000000458 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:13:33.288 -07 000000458 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:13:33.288 -07 000000458 INF: Y Motor: Moved to 64.0566 after 1430 ms (table move)
17-03-17 21:13:33.288 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177473 mm (DAC = 38769)
17-03-17 21:13:33.288 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:33.288 -07 000000424 INF: FPGA: Recv ZSGSRD 36918
17-03-17 21:13:33.298 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:13:33.298 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:33.298 -07 000000459 INF: FPGA: Recv ZSGSRD 36913
17-03-17 21:13:33.308 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:33.308 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:33.308 -07 000000576 INF: FPGA: Recv ZSGSRD 36916
17-03-17 21:13:33.318 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:33.318 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:33.318 -07 000000480 INF: FPGA: Recv ZSGSRD 36923
17-03-17 21:13:33.328 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:33.328 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:33.328 -07 000000608 INF: FPGA: Recv ZSGSRD 36922
17-03-17 21:13:33.338 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:33.338 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:33.338 -07 000000501 INF: FPGA: Recv ZSGSRD 36911
17-03-17 21:13:33.348 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:33.348 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:33.348 -07 000000012 INF: FPGA: Recv ZSGSRD 36915
17-03-17 21:13:33.358 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:33.358 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:33.358 -07 000000475 INF: FPGA: Recv ZSGSRD 36909
17-03-17 21:13:33.368 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:33.368 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:33.368 -07 000000576 INF: FPGA: Recv ZSGSRD 36915
17-03-17 21:13:33.378 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:33.378 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:33.378 -07 000000438 INF: FPGA: Recv ZSGSRD 36920
17-03-17 21:13:33.388 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:33.388 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:33.388 -07 000000480 INF: FPGA: Recv ZPIEZORD 33296
17-03-17 21:13:33.398 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:33.398 -07 000000431 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.916 V. Piezo Error = -8.0 V.
17-03-17 21:13:33.398 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36916 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36916 (-176.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36909 (-176.5 uncal um), Max = 36923 (-176.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:13:33.398 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36916, posNoise = 7, negNoise = 7
17-03-17 21:13:33.398 -07 000000431 INF: Z Motor: After move to -0.177473, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:33.398 -07 000000431 INF: Z Motor: Settle wait time = 1433 ms, measure time = 105 ms (allowed 150 ms), total time = 1538 ms
17-03-17 21:13:33.398 -07 000000431 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:13:33.448 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 21:13:33.448 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:13:33.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:33.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:33.448 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:33.448 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:33.448 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:13:33.448 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:33.448 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:33.448 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:13:33.458 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:13:33.458 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:13:33.468 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:13:33.468 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:13:33.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:13:33.518 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 21:13:33.718 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 21:13:33.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 21:13:33.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:13:33.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 21:13:33.758 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:13:33.758 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 21:13:33.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 21:13:33.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:13:33.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:33.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:13:33.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 21:13:33.858 -07 000000608 INF: Autofocus start
17-03-17 21:13:33.858 -07 000000608 INF: MeasureProfile start
17-03-17 21:13:33.858 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:33.858 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:33.868 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:13:33.868 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:13:33.868 -07 000000608 INF: MeasureProfile done
17-03-17 21:13:33.868 -07 000000608 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 21:13:33.868 -07 000000608 INF: Autofocus finished
17-03-17 21:13:34.068 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:13:34.068 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:13:34.068 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.177479567436382. ----------
17-03-17 21:13:34.068 -07 000000610 INF: Cycle	48	Tile	6	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:13:34.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37249, sync = True, waitForSettling = True)
17-03-17 21:13:34.078 -07 000000610 INF: Z Motor: Moving to -0.170515 mm, started at -0.177480 mm, distance = 6.96 um
17-03-17 21:13:34.078 -07 000000610 INF: FPGA: Xmit ZDACW 37249\n [Z Motor]
17-03-17 21:13:34.078 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:13:34.088 -07 000000610 INF: FPGA: 'ZDACW 37249' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:34.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:34.088 -07 000000459 INF: FPGA: Recv ZDACR 37249
17-03-17 21:13:34.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:34.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:13:34.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:34.248 -07 000000626 INF: FPGA: Recv ZSGSRD 35830
17-03-17 21:13:34.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:34.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:34.258 -07 000000608 INF: FPGA: Recv ZSGSRD 35838
17-03-17 21:13:34.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:34.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:34.268 -07 000000512 INF: FPGA: Recv ZSGSRD 35837
17-03-17 21:13:34.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:34.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:34.278 -07 000000458 INF: FPGA: Recv ZSGSRD 35824
17-03-17 21:13:34.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:34.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:34.288 -07 000000475 INF: FPGA: Recv ZSGSRD 35838
17-03-17 21:13:34.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:34.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:34.298 -07 000000626 INF: FPGA: Recv ZSGSRD 35832
17-03-17 21:13:34.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:34.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:34.308 -07 000000608 INF: FPGA: Recv ZSGSRD 35830
17-03-17 21:13:34.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:34.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:34.318 -07 000000012 INF: FPGA: Recv ZSGSRD 35832
17-03-17 21:13:34.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:34.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:34.328 -07 000000459 INF: FPGA: Recv ZSGSRD 35828
17-03-17 21:13:34.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:34.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:34.338 -07 000000569 INF: FPGA: Recv ZSGSRD 35842
17-03-17 21:13:34.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:34.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:34.348 -07 000000480 INF: FPGA: Recv ZPIEZORD 31873
17-03-17 21:13:34.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:34.358 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.684 V. Piezo Error = -8.7 V.
17-03-17 21:13:34.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35833 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35832 (-169.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35824 (-169.6 uncal um), Max = 35842 (-169.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:13:34.358 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35833, posNoise = 9, negNoise = 9
17-03-17 21:13:34.358 -07 000000610 INF: Z Motor: After move to -0.170515, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:34.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:13:34.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:34.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:34.358 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:34.358 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:34.358 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:13:34.358 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:34.358 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:13:34.358 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:13:34.358 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:34.358 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:13:34.358 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:13:34.358 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:13:34.358 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:13:34.358 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:13:34.358 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:13:34.358 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:13:34.368 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:13:34.368 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:13:34.368 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:13:34.368 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:13:34.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37426 150\n [Camera]
17-03-17 21:13:34.578 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:13:35.008 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 622
17-03-17 21:13:35.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 622
17-03-17 21:13:35.008 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:35.008 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:35.008 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 21:13:35.008 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 622
17-03-17 21:13:35.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 622
17-03-17 21:13:35.008 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:35.008 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:35.008 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 21:13:35.158 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.018051,
17-03-17 21:13:35.198 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37426 813
17-03-17 21:13:35.348 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:13:35.388 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:13:35.388 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:13:35.388 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:35.388 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:13:35.388 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:13:35.388 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:35.388 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:13:35.398 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:35.398 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:13:35.398 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:13:35.558 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:13:35.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:13:35.558 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:35.668 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:13:35.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:13:35.668 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:35.668 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:35.668 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:13:35.678 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:35.678 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:13:35.748 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:13:35.748 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:13:35.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37426 150' command took 2 ms to send, 1363 ms to get response, and 1369 ms overall
17-03-17 21:13:35.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:13:35.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.170522145686855. ------
17-03-17 21:13:35.748 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17702 mm
17-03-17 21:13:35.748 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:13:35.748 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:35.758 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38670, sync = True, waitForSettling = False)
17-03-17 21:13:35.758 -07 000000512 INF: Z Motor: Moving to -0.177020 mm, started at -0.170522 mm, distance = -6.50 um
17-03-17 21:13:35.758 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:13:35.758 -07 000000431 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 21:13:35.758 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:35.768 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:35.768 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:35.768 -07 000000415 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:13:35.778 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:13:35.778 -07 000000431 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:35.778 -07 000000431 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:13:35.778 -07 000000431 INF: Y Motor: Moving 1338 steps-13
17-03-17 21:13:35.778 -07 000000512 INF: FPGA: Xmit ZDACW 38670\n [Z Motor]
17-03-17 21:13:35.778 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:13:35.788 -07 000000512 INF: FPGA: 'ZDACW 38670' command took 3 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:13:35.788 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:13:35.798 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:13:35.808 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:35.808 -07 000000438 INF: FPGA: Recv ZDACR 38670
17-03-17 21:13:35.818 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:13:35.818 -07 000000512 INF: Z Motor: MoveAbsStepped took 57 ms (did NOT wait for settling yet))
17-03-17 21:13:35.988 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:13:35.988 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:13:36.058 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:13:36.058 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:13:36.058 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:36.058 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 21:13:36.058 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:13:36.058 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:36.068 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:36.068 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 509 ms.
17-03-17 21:13:36.068 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:36.068 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:13:36.168 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 21:13:36.168 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 21:13:36.208 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:36.208 -07 000000576 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:13:36.218 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:13:36.218 -07 000000431 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:36.218 -07 000000431 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:13:36.218 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.836 mm, average velocity = 2.106 mm/sec
17-03-17 21:13:36.858 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:13:36.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:13:37.168 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:37.168 -07 000000576 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:13:37.178 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:37.178 -07 000000431 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:37.198 -07 000000431 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:13:37.198 -07 000000431 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:13:37.198 -07 000000431 INF: Y Motor: Moved to 64.8784 after 1446 ms (table move)
17-03-17 21:13:37.208 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177020 mm (DAC = 38670)
17-03-17 21:13:37.208 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:37.208 -07 000000012 INF: FPGA: Recv ZSGSRD 36847
17-03-17 21:13:37.218 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:13:37.218 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:37.218 -07 000000576 INF: FPGA: Recv ZSGSRD 36843
17-03-17 21:13:37.228 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:37.228 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:37.228 -07 000000382 INF: FPGA: Recv ZSGSRD 36848
17-03-17 21:13:37.238 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:37.238 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:37.238 -07 000000429 INF: FPGA: Recv ZSGSRD 36850
17-03-17 21:13:37.248 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:37.248 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:37.248 -07 000000415 INF: FPGA: Recv ZSGSRD 36847
17-03-17 21:13:37.258 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:37.258 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:37.258 -07 000000431 INF: FPGA: Recv ZSGSRD 36849
17-03-17 21:13:37.268 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:37.268 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:37.268 -07 000000569 INF: FPGA: Recv ZSGSRD 36839
17-03-17 21:13:37.278 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:37.278 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:37.278 -07 000000512 INF: FPGA: Recv ZSGSRD 36841
17-03-17 21:13:37.288 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:37.288 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:37.288 -07 000000480 INF: FPGA: Recv ZSGSRD 36849
17-03-17 21:13:37.298 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:37.298 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:37.298 -07 000000431 INF: FPGA: Recv ZSGSRD 36849
17-03-17 21:13:37.308 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:37.308 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:37.308 -07 000000547 INF: FPGA: Recv ZPIEZORD 33260
17-03-17 21:13:37.318 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:37.318 -07 000000626 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.901 V. Piezo Error = -8.0 V.
17-03-17 21:13:37.318 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36846 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36848 (-176.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36839 (-176.1 uncal um), Max = 36850 (-176.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:13:37.318 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36846, posNoise = 4, negNoise = 7
17-03-17 21:13:37.318 -07 000000626 INF: Z Motor: After move to -0.177020, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:37.318 -07 000000626 INF: Z Motor: Settle wait time = 1449 ms, measure time = 109 ms (allowed 150 ms), total time = 1558 ms
17-03-17 21:13:37.318 -07 000000626 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 21:13:37.368 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 21:13:37.368 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:13:37.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:37.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:37.368 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:37.368 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:37.368 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:13:37.368 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:37.368 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:37.368 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:13:37.378 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:13:37.378 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:13:37.388 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:13:37.388 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:13:37.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:13:37.438 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:13:37.638 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:13:37.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:13:37.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:13:37.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 21:13:37.678 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:13:37.678 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:13:37.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 21:13:37.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:13:37.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:37.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:13:37.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:13:37.778 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:37.778 -07 000000424 INF: Autofocus start
17-03-17 21:13:37.778 -07 000000424 INF: MeasureProfile start
17-03-17 21:13:37.778 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:37.788 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:13:37.788 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:13:37.788 -07 000000424 INF: MeasureProfile done
17-03-17 21:13:37.788 -07 000000424 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:13:37.788 -07 000000424 INF: Autofocus finished
17-03-17 21:13:37.988 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:13:37.988 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:13:37.988 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.177029872586459. ----------
17-03-17 21:13:37.988 -07 000000610 INF: Cycle	48	Tile	7	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:13:37.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37203, sync = True, waitForSettling = True)
17-03-17 21:13:37.998 -07 000000610 INF: Z Motor: Moving to -0.170304 mm, started at -0.177030 mm, distance = 6.73 um
17-03-17 21:13:37.998 -07 000000610 INF: FPGA: Xmit ZDACW 37203\n [Z Motor]
17-03-17 21:13:37.998 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:13:38.008 -07 000000610 INF: FPGA: 'ZDACW 37203' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:38.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:38.008 -07 000000512 INF: FPGA: Recv ZDACR 37203
17-03-17 21:13:38.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:38.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:13:38.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:38.168 -07 000000626 INF: FPGA: Recv ZSGSRD 35811
17-03-17 21:13:38.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:38.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:38.178 -07 000000475 INF: FPGA: Recv ZSGSRD 35801
17-03-17 21:13:38.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:38.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:38.188 -07 000000569 INF: FPGA: Recv ZSGSRD 35806
17-03-17 21:13:38.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:13:38.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:38.198 -07 000000382 INF: FPGA: Recv ZSGSRD 35797
17-03-17 21:13:38.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:38.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:38.208 -07 000000429 INF: FPGA: Recv ZSGSRD 35794
17-03-17 21:13:38.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:38.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:38.218 -07 000000501 INF: FPGA: Recv ZSGSRD 35799
17-03-17 21:13:38.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:38.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:38.228 -07 000000626 INF: FPGA: Recv ZSGSRD 35796
17-03-17 21:13:38.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:38.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:38.238 -07 000000547 INF: FPGA: Recv ZSGSRD 35799
17-03-17 21:13:38.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:38.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:38.248 -07 000000431 INF: FPGA: Recv ZSGSRD 35802
17-03-17 21:13:38.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:38.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:38.258 -07 000000012 INF: FPGA: Recv ZSGSRD 35795
17-03-17 21:13:38.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:38.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:38.268 -07 000000458 INF: FPGA: Recv ZPIEZORD 31843
17-03-17 21:13:38.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:38.278 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -8.7 V.
17-03-17 21:13:38.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35800 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35799 (-169.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35794 (-169.4 uncal um), Max = 35811 (-169.5 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:13:38.278 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35800, posNoise = 11, negNoise = 6
17-03-17 21:13:38.278 -07 000000610 INF: Z Motor: After move to -0.170304, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:38.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:13:38.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:38.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:38.278 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:38.278 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:38.278 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:13:38.278 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:38.278 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:13:38.278 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:13:38.278 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:38.278 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:13:38.278 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:13:38.278 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:13:38.278 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:13:38.288 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:13:38.288 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:13:38.288 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:13:38.288 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:13:38.288 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:13:38.288 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:13:38.288 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:13:38.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37380 150\n [Camera]
17-03-17 21:13:38.498 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:13:38.928 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:13:38.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:13:38.928 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:38.928 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:38.928 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 21:13:38.928 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:13:38.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:13:38.928 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:38.928 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:38.928 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 21:13:39.118 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37380 816
17-03-17 21:13:39.268 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:13:39.308 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:13:39.308 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:13:39.308 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:39.308 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:13:39.308 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:13:39.308 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:39.308 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:13:39.308 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:13:39.308 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:13:39.318 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:13:39.468 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:13:39.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:13:39.478 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:39.588 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:13:39.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:13:39.588 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:39.588 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:39.588 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:13:39.588 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:39.588 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:13:39.668 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:13:39.668 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:13:39.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37380 150' command took 2 ms to send, 1361 ms to get response, and 1369 ms overall
17-03-17 21:13:39.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:13:39.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.170310146686177. ------
17-03-17 21:13:39.678 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:39.678 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17696 mm
17-03-17 21:13:39.678 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:13:39.678 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:39.678 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:13:39.678 -07 000000547 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 21:13:39.678 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38656, sync = True, waitForSettling = False)
17-03-17 21:13:39.678 -07 000000501 INF: Z Motor: Moving to -0.176956 mm, started at -0.170310 mm, distance = -6.65 um
17-03-17 21:13:39.688 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:13:39.688 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:39.688 -07 000000438 INF: FPGA: Recv YRDPOS 132872
17-03-17 21:13:39.698 -07 000000547 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:13:39.698 -07 000000547 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:39.698 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:13:39.698 -07 000000547 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:13:39.698 -07 000000547 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:13:39.708 -07 000000501 INF: FPGA: Xmit ZDACW 38656\n [Z Motor]
17-03-17 21:13:39.708 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:13:39.718 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:13:39.718 -07 000000501 INF: FPGA: 'ZDACW 38656' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:13:39.728 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:39.728 -07 000000012 INF: FPGA: Recv ZDACR 38656
17-03-17 21:13:39.738 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:13:39.738 -07 000000501 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 21:13:39.898 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:13:39.898 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 21:13:39.968 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:13:39.968 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:13:39.968 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:39.968 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:13:39.968 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:13:39.968 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:39.968 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:13:39.968 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:39.968 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 499 ms.
17-03-17 21:13:39.978 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:13:40.098 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:13:40.098 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 393 ms overall
17-03-17 21:13:40.128 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:40.138 -07 000000512 INF: FPGA: Recv YRDPOS 134581
17-03-17 21:13:40.148 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:40.148 -07 000000547 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:40.148 -07 000000547 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:13:40.148 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec
17-03-17 21:13:40.528 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.026244,
17-03-17 21:13:41.098 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:41.098 -07 000000475 INF: FPGA: Recv YRDPOS 134581
17-03-17 21:13:41.108 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:41.108 -07 000000547 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:41.128 -07 000000547 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:13:41.128 -07 000000547 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:13:41.128 -07 000000547 INF: Y Motor: Moved to 65.7134 after 1450 ms (table move)
17-03-17 21:13:41.138 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176956 mm (DAC = 38656)
17-03-17 21:13:41.138 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:41.138 -07 000000576 INF: FPGA: Recv ZSGSRD 36837
17-03-17 21:13:41.148 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:13:41.148 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:41.148 -07 000000424 INF: FPGA: Recv ZSGSRD 36835
17-03-17 21:13:41.158 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:41.158 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:41.158 -07 000000415 INF: FPGA: Recv ZSGSRD 36831
17-03-17 21:13:41.168 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:41.168 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:41.168 -07 000000547 INF: FPGA: Recv ZSGSRD 36839
17-03-17 21:13:41.178 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:41.178 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:41.178 -07 000000475 INF: FPGA: Recv ZSGSRD 36833
17-03-17 21:13:41.188 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:41.188 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:41.188 -07 000000512 INF: FPGA: Recv ZSGSRD 36831
17-03-17 21:13:41.198 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:41.198 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:41.198 -07 000000547 INF: FPGA: Recv ZSGSRD 36843
17-03-17 21:13:41.208 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:41.208 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:41.208 -07 000000480 INF: FPGA: Recv ZSGSRD 36843
17-03-17 21:13:41.218 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:41.218 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:41.218 -07 000000424 INF: FPGA: Recv ZSGSRD 36833
17-03-17 21:13:41.228 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:41.228 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:41.228 -07 000000429 INF: FPGA: Recv ZSGSRD 36828
17-03-17 21:13:41.238 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:41.238 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:41.238 -07 000000547 INF: FPGA: Recv ZPIEZORD 33242
17-03-17 21:13:41.248 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:41.248 -07 000000608 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.899 V. Piezo Error = -8.0 V.
17-03-17 21:13:41.248 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36835 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36834 (-176.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36828 (-176.0 uncal um), Max = 36843 (-176.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:13:41.248 -07 000000608 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36835, posNoise = 8, negNoise = 7
17-03-17 21:13:41.248 -07 000000608 INF: Z Motor: After move to -0.176956, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:41.248 -07 000000608 INF: Z Motor: Settle wait time = 1452 ms, measure time = 108 ms (allowed 150 ms), total time = 1560 ms
17-03-17 21:13:41.248 -07 000000608 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 21:13:41.298 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-17 21:13:41.298 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:13:41.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:41.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:41.298 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:41.298 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:41.298 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:13:41.298 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:41.298 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:41.298 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:13:41.308 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:13:41.308 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:13:41.318 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:13:41.318 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:13:41.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:13:41.368 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:13:41.568 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:13:41.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:13:41.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:13:41.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 21:13:41.608 -07 000000438 INF: FPGA: Recv @CAMSNAP 282
17-03-17 21:13:41.608 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 21:13:41.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 286 ms overall
17-03-17 21:13:41.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:13:41.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:41.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:13:41.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:13:41.708 -07 000000576 INF: Autofocus start
17-03-17 21:13:41.708 -07 000000576 INF: MeasureProfile start
17-03-17 21:13:41.708 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:41.708 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:41.718 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:13:41.718 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:13:41.718 -07 000000576 INF: MeasureProfile done
17-03-17 21:13:41.718 -07 000000576 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:13:41.718 -07 000000576 INF: Autofocus finished
17-03-17 21:13:41.858 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:13:41.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:13:41.918 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:13:41.918 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 21:13:41.928 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.1769592062529. ----------
17-03-17 21:13:41.928 -07 000000610 INF: Cycle	48	Tile	8	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:13:41.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37153, sync = True, waitForSettling = True)
17-03-17 21:13:41.928 -07 000000610 INF: Z Motor: Moving to -0.170076 mm, started at -0.176959 mm, distance = 6.88 um
17-03-17 21:13:41.928 -07 000000610 INF: FPGA: Xmit ZDACW 37153\n [Z Motor]
17-03-17 21:13:41.928 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:13:41.938 -07 000000610 INF: FPGA: 'ZDACW 37153' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:13:41.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:41.938 -07 000000547 INF: FPGA: Recv ZDACR 37153
17-03-17 21:13:41.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:41.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:13:42.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:42.098 -07 000000424 INF: FPGA: Recv ZSGSRD 35767
17-03-17 21:13:42.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:42.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:42.108 -07 000000626 INF: FPGA: Recv ZSGSRD 35761
17-03-17 21:13:42.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:42.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:42.118 -07 000000431 INF: FPGA: Recv ZSGSRD 35763
17-03-17 21:13:42.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:42.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:42.128 -07 000000438 INF: FPGA: Recv ZSGSRD 35767
17-03-17 21:13:42.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:42.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:42.138 -07 000000475 INF: FPGA: Recv ZSGSRD 35766
17-03-17 21:13:42.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:42.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:42.148 -07 000000415 INF: FPGA: Recv ZSGSRD 35767
17-03-17 21:13:42.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:42.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:42.158 -07 000000459 INF: FPGA: Recv ZSGSRD 35762
17-03-17 21:13:42.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:42.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:42.168 -07 000000512 INF: FPGA: Recv ZSGSRD 35768
17-03-17 21:13:42.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:42.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:42.178 -07 000000458 INF: FPGA: Recv ZSGSRD 35762
17-03-17 21:13:42.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:42.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:42.188 -07 000000626 INF: FPGA: Recv ZSGSRD 35761
17-03-17 21:13:42.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:42.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:42.198 -07 000000569 INF: FPGA: Recv ZPIEZORD 31819
17-03-17 21:13:42.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:42.208 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.669 V. Piezo Error = -8.7 V.
17-03-17 21:13:42.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35764 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35764 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35761 (-169.2 uncal um), Max = 35768 (-169.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:13:42.208 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35764, posNoise = 4, negNoise = 3
17-03-17 21:13:42.208 -07 000000610 INF: Z Motor: After move to -0.170076, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:42.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:13:42.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:42.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:42.208 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:42.208 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:13:42.208 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:13:42.208 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:42.208 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:42.208 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:13:42.208 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:13:42.208 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:13:42.208 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:13:42.208 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:13:42.218 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:13:42.218 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:13:42.218 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:13:42.218 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:13:42.228 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:13:42.228 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:13:42.228 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:13:42.228 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:13:42.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37330 150\n [Camera]
17-03-17 21:13:42.428 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:13:42.858 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:13:42.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:13:42.858 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:42.858 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:13:42.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:13:42.858 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:42.858 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 21:13:42.858 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:42.858 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:42.858 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 21:13:43.048 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37330 813
17-03-17 21:13:43.198 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:13:43.258 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 21:13:43.258 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:13:43.258 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:43.258 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:13:43.258 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:13:43.258 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:43.268 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:13:43.268 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:13:43.268 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 21:13:43.278 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 21:13:43.398 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:13:43.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:13:43.408 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:43.518 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:13:43.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:13:43.518 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:43.518 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:43.518 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:13:43.528 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:43.528 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:13:43.598 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:13:43.598 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:13:43.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37330 150' command took 2 ms to send, 1361 ms to get response, and 1368 ms overall
17-03-17 21:13:43.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:13:43.598 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.170078875049074. ------
17-03-17 21:13:43.598 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:43.598 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17644 mm
17-03-17 21:13:43.598 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:13:43.598 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:43.598 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:13:43.598 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 38542, sync = True, waitForSettling = False)
17-03-17 21:13:43.598 -07 000000429 INF: Z Motor: Moving to -0.176434 mm, started at -0.170079 mm, distance = -6.36 um
17-03-17 21:13:43.608 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:13:43.608 -07 000000429 INF: FPGA: Xmit ZDACW 38542\n [Z Motor]
17-03-17 21:13:43.608 -07 000000480 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-17 21:13:43.608 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:13:43.618 -07 000000429 INF: FPGA: 'ZDACW 38542' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:43.618 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:13:43.628 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:43.628 -07 000000458 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:13:43.638 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:13:43.638 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:43.638 -07 000000480 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:43.638 -07 000000547 INF: FPGA: Recv ZDACR 38542
17-03-17 21:13:43.638 -07 000000480 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:13:43.638 -07 000000480 INF: Y Motor: Moving 1342 steps-19
17-03-17 21:13:43.648 -07 000000429 INF: FPGA: 'ZDACR' command took 3 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:13:43.648 -07 000000429 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 21:13:43.648 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:13:43.818 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:13:43.818 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 215 ms overall
17-03-17 21:13:43.898 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 21:13:43.898 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:13:43.898 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:43.898 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:13:43.898 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 21:13:43.898 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:43.908 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:43.908 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 501 ms.
17-03-17 21:13:43.908 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:43.908 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:13:44.018 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:13:44.018 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 379 ms overall
17-03-17 21:13:44.058 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:44.068 -07 000000608 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:13:44.068 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:13:44.068 -07 000000480 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:44.068 -07 000000480 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:13:44.068 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.839 mm, average velocity = 2.214 mm/sec
17-03-17 21:13:45.018 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:45.018 -07 000000424 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:13:45.028 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:45.028 -07 000000480 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:45.048 -07 000000480 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:13:45.048 -07 000000480 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:13:45.048 -07 000000480 INF: Y Motor: Moved to 66.5386 after 1445 ms (table move)
17-03-17 21:13:45.048 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176434 mm (DAC = 38542)
17-03-17 21:13:45.048 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:45.058 -07 000000547 INF: FPGA: Recv ZSGSRD 36761
17-03-17 21:13:45.058 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:13:45.058 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:45.058 -07 000000512 INF: FPGA: Recv ZSGSRD 36753
17-03-17 21:13:45.068 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:13:45.068 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:45.068 -07 000000501 INF: FPGA: Recv ZSGSRD 36754
17-03-17 21:13:45.078 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:45.078 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:45.078 -07 000000626 INF: FPGA: Recv ZSGSRD 36759
17-03-17 21:13:45.088 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:45.088 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:45.088 -07 000000459 INF: FPGA: Recv ZSGSRD 36754
17-03-17 21:13:45.098 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:45.098 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:45.098 -07 000000415 INF: FPGA: Recv ZSGSRD 36754
17-03-17 21:13:45.108 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:45.108 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:45.108 -07 000000576 INF: FPGA: Recv ZSGSRD 36760
17-03-17 21:13:45.118 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:45.118 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:45.118 -07 000000431 INF: FPGA: Recv ZSGSRD 36760
17-03-17 21:13:45.128 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:45.128 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:45.128 -07 000000459 INF: FPGA: Recv ZSGSRD 36750
17-03-17 21:13:45.138 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:45.138 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:45.138 -07 000000576 INF: FPGA: Recv ZSGSRD 36754
17-03-17 21:13:45.148 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:45.148 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:45.148 -07 000000438 INF: FPGA: Recv ZPIEZORD 33160
17-03-17 21:13:45.158 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:45.158 -07 000000475 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.881 V. Piezo Error = -8.0 V.
17-03-17 21:13:45.158 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36756 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36754 (-175.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36750 (-175.5 uncal um), Max = 36761 (-175.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:13:45.158 -07 000000475 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36756, posNoise = 5, negNoise = 6
17-03-17 21:13:45.158 -07 000000475 INF: Z Motor: After move to -0.176434, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:45.158 -07 000000475 INF: Z Motor: Settle wait time = 1448 ms, measure time = 102 ms (allowed 150 ms), total time = 1550 ms
17-03-17 21:13:45.158 -07 000000475 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:13:45.208 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 21:13:45.208 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:13:45.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:45.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:45.208 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:45.208 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:45.208 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:13:45.208 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:45.208 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:45.208 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:13:45.218 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:13:45.218 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:13:45.228 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:13:45.228 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:13:45.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:13:45.278 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:13:45.478 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:13:45.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:13:45.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:13:45.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 21:13:45.518 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:13:45.518 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 21:13:45.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:13:45.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:13:45.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:45.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:13:45.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:13:45.618 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:45.618 -07 000000569 INF: Autofocus start
17-03-17 21:13:45.618 -07 000000569 INF: MeasureProfile start
17-03-17 21:13:45.618 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:45.628 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:13:45.628 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:13:45.628 -07 000000569 INF: MeasureProfile done
17-03-17 21:13:45.628 -07 000000569 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:13:45.628 -07 000000569 INF: Autofocus finished
17-03-17 21:13:45.828 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:13:45.828 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:13:45.828 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.176451693493701. ----------
17-03-17 21:13:45.828 -07 000000610 INF: Cycle	48	Tile	9	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:13:45.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37039, sync = True, waitForSettling = True)
17-03-17 21:13:45.838 -07 000000610 INF: Z Motor: Moving to -0.169554 mm, started at -0.176452 mm, distance = 6.90 um
17-03-17 21:13:45.838 -07 000000610 INF: FPGA: Xmit ZDACW 37039\n [Z Motor]
17-03-17 21:13:45.838 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:13:45.848 -07 000000610 INF: FPGA: 'ZDACW 37039' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:45.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:45.848 -07 000000569 INF: FPGA: Recv ZDACR 37039
17-03-17 21:13:45.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:45.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:13:45.898 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.02213,
17-03-17 21:13:46.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:46.008 -07 000000480 INF: FPGA: Recv ZSGSRD 35678
17-03-17 21:13:46.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:46.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:46.018 -07 000000608 INF: FPGA: Recv ZSGSRD 35686
17-03-17 21:13:46.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:46.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:46.028 -07 000000431 INF: FPGA: Recv ZSGSRD 35681
17-03-17 21:13:46.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:46.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:46.038 -07 000000626 INF: FPGA: Recv ZSGSRD 35679
17-03-17 21:13:46.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:46.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:46.048 -07 000000012 INF: FPGA: Recv ZSGSRD 35679
17-03-17 21:13:46.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:46.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:46.058 -07 000000382 INF: FPGA: Recv ZSGSRD 35686
17-03-17 21:13:46.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:46.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:46.068 -07 000000547 INF: FPGA: Recv ZSGSRD 35682
17-03-17 21:13:46.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:46.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:46.078 -07 000000458 INF: FPGA: Recv ZSGSRD 35683
17-03-17 21:13:46.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:46.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:46.088 -07 000000501 INF: FPGA: Recv ZSGSRD 35678
17-03-17 21:13:46.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:46.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:46.098 -07 000000576 INF: FPGA: Recv ZSGSRD 35685
17-03-17 21:13:46.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:46.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:46.108 -07 000000431 INF: FPGA: Recv ZPIEZORD 31721
17-03-17 21:13:46.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:46.118 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.652 V. Piezo Error = -8.8 V.
17-03-17 21:13:46.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35682 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35682 (-168.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35678 (-168.7 uncal um), Max = 35686 (-168.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:13:46.118 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35682, posNoise = 4, negNoise = 4
17-03-17 21:13:46.118 -07 000000610 INF: Z Motor: After move to -0.169554, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:46.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:13:46.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:46.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:46.118 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:46.118 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:13:46.118 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:13:46.118 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:13:46.118 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:46.118 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:46.118 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:13:46.118 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:13:46.118 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:13:46.118 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:13:46.128 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:13:46.128 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:13:46.128 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:13:46.128 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:13:46.128 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:13:46.128 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:13:46.138 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:13:46.138 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:13:46.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37216 150\n [Camera]
17-03-17 21:13:46.338 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:13:46.768 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:13:46.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:13:46.768 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:46.768 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:46.768 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 21:13:46.768 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:13:46.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:13:46.768 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:46.768 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:46.768 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 21:13:46.858 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:13:46.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:13:46.958 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37216 813
17-03-17 21:13:47.108 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:13:47.138 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:13:47.138 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:13:47.138 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:47.138 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:13:47.138 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:13:47.138 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:47.258 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 115 ms.
17-03-17 21:13:47.258 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 115 ms.
17-03-17 21:13:47.258 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 493 ms.
17-03-17 21:13:47.268 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 497 ms.
17-03-17 21:13:47.308 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:13:47.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:13:47.318 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:47.318 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:13:47.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:13:47.318 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:47.318 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:47.318 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:13:47.328 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:47.328 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:13:47.508 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:13:47.508 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:13:47.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37216 150' command took 2 ms to send, 1361 ms to get response, and 1369 ms overall
17-03-17 21:13:47.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:13:47.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.169552089653449. ------
17-03-17 21:13:47.508 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17641 mm
17-03-17 21:13:47.508 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:13:47.508 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:47.518 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:47.518 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 21:13:47.518 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:13:47.518 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 38537, sync = True, waitForSettling = False)
17-03-17 21:13:47.518 -07 000000012 INF: Z Motor: Moving to -0.176411 mm, started at -0.169552 mm, distance = -6.86 um
17-03-17 21:13:47.518 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:13:47.518 -07 000000459 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 21:13:47.528 -07 000000012 INF: FPGA: Xmit ZDACW 38537\n [Z Motor]
17-03-17 21:13:47.528 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:13:47.538 -07 000000012 INF: FPGA: 'ZDACW 38537' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:13:47.538 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:47.538 -07 000000475 INF: FPGA: Recv YRDPOS 136272
17-03-17 21:13:47.548 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:13:47.548 -07 000000459 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:47.548 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:47.548 -07 000000431 INF: FPGA: Recv ZDACR 38537
17-03-17 21:13:47.548 -07 000000459 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:13:47.548 -07 000000459 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:13:47.558 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:13:47.558 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:13:47.558 -07 000000012 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 21:13:47.718 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:13:47.718 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:13:47.718 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:47.718 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 21:13:47.718 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:13:47.718 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:47.718 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:47.718 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:13:47.718 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:13:47.718 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 205 ms overall
17-03-17 21:13:47.718 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:13:47.728 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:13:47.928 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 21:13:47.928 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 21:13:47.968 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:47.968 -07 000000480 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:13:47.978 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:13:47.978 -07 000000459 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:47.978 -07 000000459 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 21:13:47.978 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.204 mm/sec
17-03-17 21:13:48.928 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:48.928 -07 000000576 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:13:48.938 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:48.938 -07 000000459 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:48.958 -07 000000459 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:13:48.958 -07 000000459 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:13:48.958 -07 000000459 INF: Y Motor: Moved to 67.3716 after 1439 ms (table move)
17-03-17 21:13:48.958 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176411 mm (DAC = 38537)
17-03-17 21:13:48.958 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:48.958 -07 000000569 INF: FPGA: Recv ZSGSRD 36748
17-03-17 21:13:48.968 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:13:48.968 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:48.968 -07 000000438 INF: FPGA: Recv ZSGSRD 36748
17-03-17 21:13:48.978 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:48.978 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:48.978 -07 000000382 INF: FPGA: Recv ZSGSRD 36748
17-03-17 21:13:48.988 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:48.988 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:48.988 -07 000000512 INF: FPGA: Recv ZSGSRD 36751
17-03-17 21:13:48.998 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:48.998 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:48.998 -07 000000569 INF: FPGA: Recv ZSGSRD 36754
17-03-17 21:13:49.008 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:49.008 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:49.008 -07 000000458 INF: FPGA: Recv ZSGSRD 36750
17-03-17 21:13:49.018 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:49.018 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:49.018 -07 000000415 INF: FPGA: Recv ZSGSRD 36750
17-03-17 21:13:49.028 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:49.028 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:49.028 -07 000000429 INF: FPGA: Recv ZSGSRD 36745
17-03-17 21:13:49.038 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:49.038 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:49.038 -07 000000382 INF: FPGA: Recv ZSGSRD 36744
17-03-17 21:13:49.048 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:49.048 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:49.048 -07 000000501 INF: FPGA: Recv ZSGSRD 36751
17-03-17 21:13:49.058 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:49.058 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:49.058 -07 000000429 INF: FPGA: Recv ZPIEZORD 33157
17-03-17 21:13:49.068 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:49.068 -07 000000608 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.880 V. Piezo Error = -8.0 V.
17-03-17 21:13:49.068 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36749 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36749 (-175.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36744 (-175.5 uncal um), Max = 36754 (-175.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:13:49.068 -07 000000608 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36749, posNoise = 5, negNoise = 5
17-03-17 21:13:49.068 -07 000000608 INF: Z Motor: After move to -0.176411, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:49.068 -07 000000608 INF: Z Motor: Settle wait time = 1443 ms, measure time = 105 ms (allowed 150 ms), total time = 1548 ms
17-03-17 21:13:49.068 -07 000000608 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:13:49.118 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 21:13:49.118 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:13:49.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:49.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:49.118 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:49.118 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:49.118 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:13:49.118 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:49.118 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:49.118 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:13:49.128 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:13:49.128 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:13:49.138 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:13:49.138 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:13:49.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:13:49.178 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:13:49.378 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:13:49.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:13:49.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:13:49.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 21:13:49.418 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:13:49.418 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 21:13:49.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 21:13:49.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:13:49.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:49.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:13:49.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:13:49.518 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:49.518 -07 000000480 INF: Autofocus start
17-03-17 21:13:49.518 -07 000000480 INF: MeasureProfile start
17-03-17 21:13:49.518 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:49.528 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:13:49.528 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:13:49.538 -07 000000480 INF: MeasureProfile done
17-03-17 21:13:49.538 -07 000000480 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:13:49.538 -07 000000480 INF: Autofocus finished
17-03-17 21:13:49.728 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:13:49.728 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:13:49.728 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.176406724008708. ----------
17-03-17 21:13:49.738 -07 000000610 INF: Cycle	48	Tile	10	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:13:49.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37052, sync = True, waitForSettling = True)
17-03-17 21:13:49.738 -07 000000610 INF: Z Motor: Moving to -0.169613 mm, started at -0.176407 mm, distance = 6.79 um
17-03-17 21:13:49.738 -07 000000610 INF: FPGA: Xmit ZDACW 37052\n [Z Motor]
17-03-17 21:13:49.738 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:13:49.748 -07 000000610 INF: FPGA: 'ZDACW 37052' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:13:49.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:49.748 -07 000000459 INF: FPGA: Recv ZDACR 37052
17-03-17 21:13:49.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:49.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:13:49.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:49.908 -07 000000576 INF: FPGA: Recv ZSGSRD 35688
17-03-17 21:13:49.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:49.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:49.918 -07 000000429 INF: FPGA: Recv ZSGSRD 35693
17-03-17 21:13:49.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:49.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:49.928 -07 000000501 INF: FPGA: Recv ZSGSRD 35697
17-03-17 21:13:49.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:49.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:49.938 -07 000000512 INF: FPGA: Recv ZSGSRD 35696
17-03-17 21:13:49.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:49.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:49.948 -07 000000576 INF: FPGA: Recv ZSGSRD 35700
17-03-17 21:13:49.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:49.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:49.958 -07 000000626 INF: FPGA: Recv ZSGSRD 35691
17-03-17 21:13:49.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:49.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:49.968 -07 000000458 INF: FPGA: Recv ZSGSRD 35689
17-03-17 21:13:49.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:49.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:49.978 -07 000000415 INF: FPGA: Recv ZSGSRD 35696
17-03-17 21:13:49.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:49.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:49.988 -07 000000382 INF: FPGA: Recv ZSGSRD 35693
17-03-17 21:13:49.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:49.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:49.998 -07 000000475 INF: FPGA: Recv ZSGSRD 35695
17-03-17 21:13:50.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:50.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:50.008 -07 000000569 INF: FPGA: Recv ZPIEZORD 31722
17-03-17 21:13:50.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:50.018 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.654 V. Piezo Error = -8.8 V.
17-03-17 21:13:50.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35694 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35694 (-168.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35688 (-168.7 uncal um), Max = 35700 (-168.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:13:50.018 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35694, posNoise = 6, negNoise = 6
17-03-17 21:13:50.018 -07 000000610 INF: Z Motor: After move to -0.169613, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:50.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:13:50.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:50.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:50.018 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:50.018 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:50.018 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:13:50.018 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:13:50.018 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:13:50.018 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:50.018 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:13:50.018 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:13:50.018 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:50.018 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:13:50.028 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:13:50.028 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:13:50.028 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:13:50.028 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:13:50.028 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:13:50.028 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:13:50.038 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:13:50.038 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:13:50.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37229 150\n [Camera]
17-03-17 21:13:50.238 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:13:50.668 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:13:50.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:13:50.668 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:50.668 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:50.668 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:13:50.668 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:13:50.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:13:50.668 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:50.668 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:50.668 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:13:50.858 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37229 813
17-03-17 21:13:51.008 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:13:51.048 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:13:51.048 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:13:51.048 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:51.048 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:13:51.048 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:13:51.048 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:51.048 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:51.048 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:51.048 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:13:51.058 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:13:51.208 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:13:51.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:13:51.218 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:51.218 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:51.218 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:13:51.218 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:13:51.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:13:51.218 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:51.218 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:51.218 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:13:51.268 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.024884,
17-03-17 21:13:51.408 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:13:51.408 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:13:51.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37229 150' command took 2 ms to send, 1361 ms to get response, and 1368 ms overall
17-03-17 21:13:51.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:13:51.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169629180199151. ------
17-03-17 21:13:51.408 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:51.408 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17600 mm
17-03-17 21:13:51.408 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:13:51.418 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:51.418 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:13:51.418 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:13:51.418 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:13:51.418 -07 000000458 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 21:13:51.418 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38448, sync = True, waitForSettling = False)
17-03-17 21:13:51.418 -07 000000415 INF: Z Motor: Moving to -0.176004 mm, started at -0.169629 mm, distance = -6.37 um
17-03-17 21:13:51.428 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:51.428 -07 000000424 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:13:51.438 -07 000000415 INF: FPGA: Xmit ZDACW 38448\n [Z Motor]
17-03-17 21:13:51.438 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:13:51.438 -07 000000458 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:51.438 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:13:51.438 -07 000000458 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:13:51.438 -07 000000458 INF: Y Motor: Moving 1345 steps-23
17-03-17 21:13:51.448 -07 000000415 INF: FPGA: 'ZDACW 38448' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:13:51.448 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:51.448 -07 000000576 INF: FPGA: Recv ZDACR 38448
17-03-17 21:13:51.458 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:51.458 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:13:51.458 -07 000000415 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 21:13:51.618 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 21:13:51.618 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:13:51.618 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:51.618 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:13:51.618 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:13:51.618 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:51.618 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:13:51.618 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:13:51.618 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:51.628 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:13:51.628 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 21:13:51.628 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:13:51.828 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:13:51.828 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 21:13:51.858 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:13:51.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:13:51.868 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:51.878 -07 000000608 INF: FPGA: Recv YRDPOS 139682
17-03-17 21:13:51.878 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:13:51.878 -07 000000458 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:51.878 -07 000000458 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 21:13:51.878 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.841 mm, average velocity = 2.135 mm/sec
17-03-17 21:13:52.828 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:52.828 -07 000000480 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:13:52.838 -07 000000458 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:52.838 -07 000000458 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:52.858 -07 000000458 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:13:52.858 -07 000000458 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:13:52.858 -07 000000458 INF: Y Motor: Moved to 68.2046 after 1439 ms (table move)
17-03-17 21:13:52.858 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176004 mm (DAC = 38448)
17-03-17 21:13:52.858 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:52.858 -07 000000475 INF: FPGA: Recv ZSGSRD 36680
17-03-17 21:13:52.868 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:13:52.868 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:52.868 -07 000000475 INF: FPGA: Recv ZSGSRD 36680
17-03-17 21:13:52.878 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:52.878 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:52.878 -07 000000626 INF: FPGA: Recv ZSGSRD 36692
17-03-17 21:13:52.888 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:52.888 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:52.888 -07 000000429 INF: FPGA: Recv ZSGSRD 36696
17-03-17 21:13:52.898 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:52.898 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:52.898 -07 000000438 INF: FPGA: Recv ZSGSRD 36689
17-03-17 21:13:52.908 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:52.908 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:52.908 -07 000000576 INF: FPGA: Recv ZSGSRD 36688
17-03-17 21:13:52.918 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:52.918 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:52.918 -07 000000415 INF: FPGA: Recv ZSGSRD 36684
17-03-17 21:13:52.928 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:52.928 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:52.928 -07 000000429 INF: FPGA: Recv ZSGSRD 36683
17-03-17 21:13:52.938 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:52.938 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:52.938 -07 000000475 INF: FPGA: Recv ZSGSRD 36688
17-03-17 21:13:52.948 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:52.948 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:52.948 -07 000000382 INF: FPGA: Recv ZSGSRD 36684
17-03-17 21:13:52.958 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:52.958 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:52.958 -07 000000512 INF: FPGA: Recv ZPIEZORD 33050
17-03-17 21:13:52.968 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:52.968 -07 000000459 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.867 V. Piezo Error = -8.1 V.
17-03-17 21:13:52.968 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36686 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36686 (-175.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36680 (-175.1 uncal um), Max = 36696 (-175.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:13:52.968 -07 000000459 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36686, posNoise = 10, negNoise = 6
17-03-17 21:13:52.968 -07 000000459 INF: Z Motor: After move to -0.176004, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:52.968 -07 000000459 INF: Z Motor: Settle wait time = 1442 ms, measure time = 105 ms (allowed 150 ms), total time = 1547 ms
17-03-17 21:13:52.968 -07 000000459 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:13:53.018 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 21:13:53.018 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:13:53.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:53.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:53.018 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:53.018 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:53.018 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:13:53.018 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:53.018 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:53.018 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:13:53.028 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:13:53.028 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:13:53.038 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:13:53.038 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:13:53.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:13:53.078 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:13:53.278 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:13:53.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:13:53.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:13:53.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 21:13:53.318 -07 000000608 INF: FPGA: Recv @CAMSNAP 281
17-03-17 21:13:53.328 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 21:13:53.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 286 ms overall
17-03-17 21:13:53.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:13:53.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:53.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:13:53.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:13:53.428 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:53.428 -07 000000512 INF: Autofocus start
17-03-17 21:13:53.428 -07 000000512 INF: MeasureProfile start
17-03-17 21:13:53.428 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:53.438 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:13:53.438 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:13:53.438 -07 000000512 INF: MeasureProfile done
17-03-17 21:13:53.438 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:13:53.438 -07 000000512 INF: Autofocus finished
17-03-17 21:13:53.638 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:13:53.638 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:13:53.648 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.176001998643777. ----------
17-03-17 21:13:53.648 -07 000000610 INF: Cycle	48	Tile	11	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:13:53.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36963, sync = True, waitForSettling = True)
17-03-17 21:13:53.648 -07 000000610 INF: Z Motor: Moving to -0.169206 mm, started at -0.176002 mm, distance = 6.80 um
17-03-17 21:13:53.648 -07 000000610 INF: FPGA: Xmit ZDACW 36963\n [Z Motor]
17-03-17 21:13:53.648 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:13:53.658 -07 000000610 INF: FPGA: 'ZDACW 36963' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:13:53.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:53.658 -07 000000415 INF: FPGA: Recv ZDACR 36963
17-03-17 21:13:53.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:53.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:13:53.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:53.818 -07 000000547 INF: FPGA: Recv ZSGSRD 35631
17-03-17 21:13:53.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:53.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:53.828 -07 000000626 INF: FPGA: Recv ZSGSRD 35628
17-03-17 21:13:53.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:53.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:53.838 -07 000000438 INF: FPGA: Recv ZSGSRD 35629
17-03-17 21:13:53.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:53.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:53.848 -07 000000569 INF: FPGA: Recv ZSGSRD 35626
17-03-17 21:13:53.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:53.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:53.858 -07 000000415 INF: FPGA: Recv ZSGSRD 35629
17-03-17 21:13:53.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:53.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:53.868 -07 000000547 INF: FPGA: Recv ZSGSRD 35632
17-03-17 21:13:53.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:53.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:53.878 -07 000000475 INF: FPGA: Recv ZSGSRD 35625
17-03-17 21:13:53.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:53.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:53.888 -07 000000501 INF: FPGA: Recv ZSGSRD 35629
17-03-17 21:13:53.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:53.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:53.898 -07 000000569 INF: FPGA: Recv ZSGSRD 35629
17-03-17 21:13:53.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:53.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:53.908 -07 000000415 INF: FPGA: Recv ZSGSRD 35630
17-03-17 21:13:53.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:53.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:53.918 -07 000000512 INF: FPGA: Recv ZPIEZORD 31634
17-03-17 21:13:53.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:53.928 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.640 V. Piezo Error = -8.8 V.
17-03-17 21:13:53.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35629 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35629 (-168.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35625 (-168.3 uncal um), Max = 35632 (-168.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:13:53.928 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35629, posNoise = 3, negNoise = 4
17-03-17 21:13:53.928 -07 000000610 INF: Z Motor: After move to -0.169206, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:53.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:13:53.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:53.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:53.928 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:53.928 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:53.928 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:13:53.928 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:13:53.928 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:13:53.928 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:53.928 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:13:53.928 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:13:53.928 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:53.928 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:13:53.938 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:13:53.938 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:13:53.938 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:13:53.938 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:13:53.948 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:13:53.948 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:13:53.948 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:13:53.948 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:13:53.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37139 150\n [Camera]
17-03-17 21:13:54.148 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:13:54.578 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:13:54.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:13:54.578 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:54.578 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:54.578 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2187315360, 0x0, 391868352) start.
17-03-17 21:13:54.578 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:13:54.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:13:54.578 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:54.578 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:54.578 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2222737624, 0x0, 418435064) start.
17-03-17 21:13:54.768 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37139 813
17-03-17 21:13:54.918 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:13:54.958 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2187315360, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:13:54.958 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:13:54.958 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:54.958 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2222737624, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:13:54.958 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:13:54.958 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:54.958 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:54.958 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:13:54.968 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:54.968 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:13:55.128 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1171
17-03-17 21:13:55.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1171
17-03-17 21:13:55.128 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:55.128 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:55.128 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:13:55.128 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1171
17-03-17 21:13:55.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1171
17-03-17 21:13:55.128 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:55.128 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:55.128 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:13:55.318 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:13:55.318 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:13:55.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37139 150' command took 2 ms to send, 1362 ms to get response, and 1368 ms overall
17-03-17 21:13:55.318 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:13:55.318 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.169211606409936. ------
17-03-17 21:13:55.318 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:55.318 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17578 mm
17-03-17 21:13:55.318 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:13:55.328 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:55.328 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:13:55.328 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:13:55.328 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:13:55.328 -07 000000431 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 21:13:55.328 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38400, sync = True, waitForSettling = False)
17-03-17 21:13:55.328 -07 000000501 INF: Z Motor: Moving to -0.175784 mm, started at -0.169212 mm, distance = -6.57 um
17-03-17 21:13:55.338 -07 000000501 INF: FPGA: Xmit ZDACW 38400\n [Z Motor]
17-03-17 21:13:55.338 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:13:55.348 -07 000000501 INF: FPGA: 'ZDACW 38400' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:13:55.348 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:55.348 -07 000000569 INF: FPGA: Recv YRDPOS 139684
17-03-17 21:13:55.358 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:55.358 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:13:55.358 -07 000000431 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:55.358 -07 000000459 INF: FPGA: Recv ZDACR 38400
17-03-17 21:13:55.358 -07 000000431 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:13:55.358 -07 000000431 INF: Y Motor: Moving 1340 steps-17
17-03-17 21:13:55.368 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:13:55.368 -07 000000501 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 21:13:55.368 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:13:55.518 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:13:55.518 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:13:55.518 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:55.518 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 21:13:55.518 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:13:55.518 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:55.528 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:13:55.528 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:13:55.528 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:13:55.528 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:13:55.528 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:13:55.528 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:13:55.738 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 21:13:55.738 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 21:13:55.778 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:55.778 -07 000000458 INF: FPGA: Recv YRDPOS 141366
17-03-17 21:13:55.788 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:13:55.788 -07 000000431 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:55.788 -07 000000431 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 21:13:55.788 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.838 mm, average velocity = 2.182 mm/sec
17-03-17 21:13:56.638 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.0344,
17-03-17 21:13:56.738 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:56.738 -07 000000576 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:13:56.748 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:13:56.748 -07 000000431 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:56.768 -07 000000431 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:13:56.768 -07 000000431 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:13:56.768 -07 000000431 INF: Y Motor: Moved to 69.0269 after 1439 ms (table move)
17-03-17 21:13:56.768 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175784 mm (DAC = 38400)
17-03-17 21:13:56.768 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:56.778 -07 000000431 INF: FPGA: Recv ZSGSRD 36655
17-03-17 21:13:56.778 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:13:56.778 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:56.778 -07 000000512 INF: FPGA: Recv ZSGSRD 36654
17-03-17 21:13:56.788 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:56.788 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:56.788 -07 000000424 INF: FPGA: Recv ZSGSRD 36656
17-03-17 21:13:56.798 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:56.798 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:56.798 -07 000000608 INF: FPGA: Recv ZSGSRD 36655
17-03-17 21:13:56.808 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:56.808 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:56.808 -07 000000458 INF: FPGA: Recv ZSGSRD 36652
17-03-17 21:13:56.818 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:56.818 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:56.818 -07 000000569 INF: FPGA: Recv ZSGSRD 36650
17-03-17 21:13:56.828 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:56.828 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:56.828 -07 000000576 INF: FPGA: Recv ZSGSRD 36646
17-03-17 21:13:56.838 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:56.838 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:56.838 -07 000000459 INF: FPGA: Recv ZSGSRD 36646
17-03-17 21:13:56.848 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:56.848 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:56.848 -07 000000458 INF: FPGA: Recv ZSGSRD 36652
17-03-17 21:13:56.858 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:56.858 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:56.858 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:13:56.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:13:56.858 -07 000000431 INF: FPGA: Recv ZSGSRD 36659
17-03-17 21:13:56.868 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:56.868 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:56.868 -07 000000501 INF: FPGA: Recv ZPIEZORD 32988
17-03-17 21:13:56.878 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:56.878 -07 000000012 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.859 V. Piezo Error = -8.1 V.
17-03-17 21:13:56.878 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36652 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36653 (-174.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36646 (-174.9 uncal um), Max = 36659 (-174.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:13:56.878 -07 000000012 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36652, posNoise = 7, negNoise = 6
17-03-17 21:13:56.878 -07 000000012 INF: Z Motor: After move to -0.175784, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:56.878 -07 000000012 INF: Z Motor: Settle wait time = 1444 ms, measure time = 103 ms (allowed 150 ms), total time = 1547 ms
17-03-17 21:13:56.878 -07 000000012 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:13:56.928 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 21:13:56.928 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:13:56.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:56.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:56.928 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:56.928 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:56.928 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:13:56.928 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:56.928 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:56.928 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:13:56.938 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:13:56.938 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:13:56.948 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:13:56.948 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:13:56.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:13:57.008 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:13:57.208 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:13:57.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:13:57.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:13:57.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) start.
17-03-17 21:13:57.248 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:13:57.248 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 21:13:57.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 299 ms overall
17-03-17 21:13:57.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:13:57.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:57.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:13:57.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:13:57.448 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:57.448 -07 000000501 INF: Autofocus start
17-03-17 21:13:57.448 -07 000000501 INF: MeasureProfile start
17-03-17 21:13:57.448 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:57.458 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:13:57.458 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:13:57.458 -07 000000501 INF: MeasureProfile done
17-03-17 21:13:57.458 -07 000000501 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:13:57.458 -07 000000501 INF: Autofocus finished
17-03-17 21:13:57.658 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:13:57.658 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:13:57.668 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.175783575430958. ----------
17-03-17 21:13:57.668 -07 000000610 INF: Cycle	48	Tile	12	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:13:57.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36933, sync = True, waitForSettling = True)
17-03-17 21:13:57.668 -07 000000610 INF: Z Motor: Moving to -0.169068 mm, started at -0.175784 mm, distance = 6.72 um
17-03-17 21:13:57.668 -07 000000610 INF: FPGA: Xmit ZDACW 36933\n [Z Motor]
17-03-17 21:13:57.668 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:13:57.678 -07 000000610 INF: FPGA: 'ZDACW 36933' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:13:57.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:57.678 -07 000000569 INF: FPGA: Recv ZDACR 36933
17-03-17 21:13:57.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:57.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:13:57.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:57.838 -07 000000415 INF: FPGA: Recv ZSGSRD 35608
17-03-17 21:13:57.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:57.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:57.848 -07 000000480 INF: FPGA: Recv ZSGSRD 35608
17-03-17 21:13:57.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:57.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:57.858 -07 000000512 INF: FPGA: Recv ZSGSRD 35605
17-03-17 21:13:57.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:57.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:57.868 -07 000000458 INF: FPGA: Recv ZSGSRD 35606
17-03-17 21:13:57.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:57.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:57.878 -07 000000501 INF: FPGA: Recv ZSGSRD 35605
17-03-17 21:13:57.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:57.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:57.888 -07 000000415 INF: FPGA: Recv ZSGSRD 35608
17-03-17 21:13:57.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:57.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:57.898 -07 000000547 INF: FPGA: Recv ZSGSRD 35615
17-03-17 21:13:57.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:57.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:57.908 -07 000000626 INF: FPGA: Recv ZSGSRD 35605
17-03-17 21:13:57.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:57.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:57.918 -07 000000012 INF: FPGA: Recv ZSGSRD 35605
17-03-17 21:13:57.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:57.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:13:57.928 -07 000000576 INF: FPGA: Recv ZSGSRD 35603
17-03-17 21:13:57.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:57.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:13:57.938 -07 000000438 INF: FPGA: Recv ZPIEZORD 31638
17-03-17 21:13:57.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:57.948 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -8.8 V.
17-03-17 21:13:57.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35607 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35606 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35603 (-168.2 uncal um), Max = 35615 (-168.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:13:57.948 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35607, posNoise = 8, negNoise = 4
17-03-17 21:13:57.948 -07 000000610 INF: Z Motor: After move to -0.169068, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:13:57.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:13:57.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:13:57.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:13:57.948 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:13:57.948 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:13:57.948 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:13:57.948 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:13:57.948 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:13:57.948 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:13:57.948 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:13:57.948 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:13:57.948 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:13:57.948 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:13:57.958 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:13:57.958 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:13:57.958 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:13:57.958 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:13:57.968 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:13:57.968 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:13:57.968 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:13:57.968 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:13:57.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37109 150\n [Camera]
17-03-17 21:13:58.168 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:13:58.598 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:13:58.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:13:58.598 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:58.598 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:58.598 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2501443856, 0x0, 391868352) start.
17-03-17 21:13:58.598 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:13:58.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:13:58.598 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:58.598 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:58.598 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 21:13:58.788 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37109 813
17-03-17 21:13:58.938 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:13:58.968 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:13:58.968 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:13:58.968 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:58.978 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2501443856, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:13:58.978 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:13:58.978 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:58.978 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:58.978 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:13:58.978 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:13:58.988 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:13:59.138 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:13:59.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:13:59.148 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:13:59.148 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:13:59.148 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 21:13:59.148 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:13:59.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:13:59.148 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:13:59.148 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:13:59.148 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) start.
17-03-17 21:13:59.338 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:13:59.338 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:13:59.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37109 150' command took 2 ms to send, 1361 ms to get response, and 1368 ms overall
17-03-17 21:13:59.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:13:59.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.169070273742817. ------
17-03-17 21:13:59.338 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:13:59.338 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17546 mm
17-03-17 21:13:59.338 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:13:59.338 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:13:59.348 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:13:59.348 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:13:59.348 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:13:59.348 -07 000000415 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 21:13:59.348 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 38330, sync = True, waitForSettling = False)
17-03-17 21:13:59.348 -07 000000429 INF: Z Motor: Moving to -0.175463 mm, started at -0.169070 mm, distance = -6.39 um
17-03-17 21:13:59.358 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:59.358 -07 000000424 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:13:59.368 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:13:59.368 -07 000000415 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:59.368 -07 000000415 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:13:59.368 -07 000000429 INF: FPGA: Xmit ZDACW 38330\n [Z Motor]
17-03-17 21:13:59.368 -07 000000415 INF: Y Motor: Moving 1353 steps-33
17-03-17 21:13:59.368 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:13:59.378 -07 000000429 INF: FPGA: 'ZDACW 38330' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:13:59.378 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:13:59.378 -07 000000626 INF: FPGA: Recv ZDACR 38330
17-03-17 21:13:59.388 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:13:59.388 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:13:59.388 -07 000000429 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 21:13:59.538 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:13:59.538 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:13:59.538 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:59.538 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 21:13:59.538 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:13:59.538 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:13:59.548 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:13:59.548 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:13:59.548 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:13:59.548 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:13:59.548 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:13:59.548 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 21:13:59.758 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 21:13:59.758 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:13:59.798 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:13:59.798 -07 000000547 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:13:59.808 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:13:59.808 -07 000000415 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:13:59.808 -07 000000415 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:13:59.808 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.130 mm/sec
17-03-17 21:14:00.758 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:00.758 -07 000000429 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:14:00.768 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:00.768 -07 000000415 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:00.788 -07 000000415 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:14:00.788 -07 000000415 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:14:00.788 -07 000000415 INF: Y Motor: Moved to 69.8628 after 1442 ms (table move)
17-03-17 21:14:00.788 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175463 mm (DAC = 38330)
17-03-17 21:14:00.788 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:00.798 -07 000000382 INF: FPGA: Recv ZSGSRD 36607
17-03-17 21:14:00.798 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:14:00.798 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:00.798 -07 000000459 INF: FPGA: Recv ZSGSRD 36603
17-03-17 21:14:00.808 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:00.808 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:00.808 -07 000000458 INF: FPGA: Recv ZSGSRD 36607
17-03-17 21:14:00.818 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:00.818 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:00.818 -07 000000429 INF: FPGA: Recv ZSGSRD 36607
17-03-17 21:14:00.828 -07 000000012 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:00.828 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:00.828 -07 000000382 INF: FPGA: Recv ZSGSRD 36601
17-03-17 21:14:00.838 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:00.838 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:00.838 -07 000000569 INF: FPGA: Recv ZSGSRD 36609
17-03-17 21:14:00.848 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:00.848 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:00.848 -07 000000475 INF: FPGA: Recv ZSGSRD 36604
17-03-17 21:14:00.858 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:00.858 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:00.858 -07 000000501 INF: FPGA: Recv ZSGSRD 36594
17-03-17 21:14:00.868 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:00.868 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:00.868 -07 000000438 INF: FPGA: Recv ZSGSRD 36602
17-03-17 21:14:00.878 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:00.878 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:00.878 -07 000000458 INF: FPGA: Recv ZSGSRD 36605
17-03-17 21:14:00.888 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:00.888 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:00.888 -07 000000608 INF: FPGA: Recv ZPIEZORD 32961
17-03-17 21:14:00.898 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:00.898 -07 000000012 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.849 V. Piezo Error = -8.1 V.
17-03-17 21:14:00.898 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36604 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36604 (-174.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36594 (-174.5 uncal um), Max = 36609 (-174.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:14:00.898 -07 000000012 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36604, posNoise = 5, negNoise = 10
17-03-17 21:14:00.898 -07 000000012 INF: Z Motor: After move to -0.175463, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:00.898 -07 000000012 INF: Z Motor: Settle wait time = 1445 ms, measure time = 103 ms (allowed 150 ms), total time = 1548 ms
17-03-17 21:14:00.898 -07 000000012 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:14:00.948 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 21:14:00.948 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:14:00.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:00.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:00.948 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:00.948 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:00.948 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:14:00.948 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:00.948 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:00.948 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:14:00.958 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:14:00.958 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:14:00.968 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:14:00.968 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:14:00.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:14:01.018 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:14:01.218 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:14:01.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:14:01.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:14:01.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2536866120, 0x0, 559484976) start.
17-03-17 21:14:01.248 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:14:01.258 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 21:14:01.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 21:14:01.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2536866120, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:14:01.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:01.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:14:01.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:14:01.358 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:01.358 -07 000000431 INF: Autofocus start
17-03-17 21:14:01.358 -07 000000431 INF: MeasureProfile start
17-03-17 21:14:01.358 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:01.368 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:14:01.368 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:14:01.368 -07 000000431 INF: MeasureProfile done
17-03-17 21:14:01.368 -07 000000431 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:14:01.368 -07 000000431 INF: Autofocus finished
17-03-17 21:14:01.568 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:14:01.568 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:14:01.568 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.175475213248153. ----------
17-03-17 21:14:01.568 -07 000000610 INF: Cycle	48	Tile	13	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:14:01.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36862, sync = True, waitForSettling = True)
17-03-17 21:14:01.578 -07 000000610 INF: Z Motor: Moving to -0.168743 mm, started at -0.175475 mm, distance = 6.73 um
17-03-17 21:14:01.578 -07 000000610 INF: FPGA: Xmit ZDACW 36862\n [Z Motor]
17-03-17 21:14:01.578 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:14:01.588 -07 000000610 INF: FPGA: 'ZDACW 36862' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:14:01.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:01.588 -07 000000501 INF: FPGA: Recv ZDACR 36862
17-03-17 21:14:01.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:01.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:14:01.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:01.748 -07 000000626 INF: FPGA: Recv ZSGSRD 35559
17-03-17 21:14:01.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:01.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:01.758 -07 000000012 INF: FPGA: Recv ZSGSRD 35559
17-03-17 21:14:01.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:01.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:01.768 -07 000000424 INF: FPGA: Recv ZSGSRD 35560
17-03-17 21:14:01.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:01.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:01.778 -07 000000382 INF: FPGA: Recv ZSGSRD 35553
17-03-17 21:14:01.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:01.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:01.788 -07 000000459 INF: FPGA: Recv ZSGSRD 35563
17-03-17 21:14:01.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:01.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:01.798 -07 000000512 INF: FPGA: Recv ZSGSRD 35551
17-03-17 21:14:01.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:01.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:01.808 -07 000000576 INF: FPGA: Recv ZSGSRD 35556
17-03-17 21:14:01.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:01.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:01.818 -07 000000626 INF: FPGA: Recv ZSGSRD 35565
17-03-17 21:14:01.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:01.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:01.828 -07 000000012 INF: FPGA: Recv ZSGSRD 35559
17-03-17 21:14:01.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:01.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:01.838 -07 000000424 INF: FPGA: Recv ZSGSRD 35555
17-03-17 21:14:01.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:01.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:01.848 -07 000000512 INF: FPGA: Recv ZPIEZORD 31575
17-03-17 21:14:01.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:01.858 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.625 V. Piezo Error = -8.8 V.
17-03-17 21:14:01.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35558 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35559 (-167.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35551 (-167.8 uncal um), Max = 35565 (-167.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:14:01.858 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35558, posNoise = 7, negNoise = 7
17-03-17 21:14:01.858 -07 000000610 INF: Z Motor: After move to -0.168743, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:01.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:14:01.858 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:14:01.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:01.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:01.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:14:01.858 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:01.858 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:01.868 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:14:01.868 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:01.868 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:14:01.868 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:14:01.868 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:01.868 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:14:01.868 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:14:01.868 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:14:01.868 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:14:01.868 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:14:01.868 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:14:01.868 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:14:01.888 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:14:01.888 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:14:01.888 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:14:01.888 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:14:01.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 37039 150\n [Camera]
17-03-17 21:14:02.008 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.027603,
17-03-17 21:14:02.088 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:14:02.518 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:14:02.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:14:02.518 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:02.518 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:02.518 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 21:14:02.528 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:14:02.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:14:02.528 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:02.528 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:02.528 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 21:14:02.718 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37039 816
17-03-17 21:14:02.858 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:14:02.898 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:14:02.898 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:14:02.898 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:02.908 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:14:02.908 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:14:02.908 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:02.908 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:02.908 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:14:02.908 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:02.918 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:14:03.068 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:14:03.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:14:03.068 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:03.208 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:14:03.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:14:03.208 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:03.208 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:03.208 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 21:14:03.218 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:03.218 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 21:14:03.258 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:14:03.258 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:14:03.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 37039 150' command took 2 ms to send, 1356 ms to get response, and 1368 ms overall
17-03-17 21:14:03.258 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:14:03.258 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.168755487347871. ------
17-03-17 21:14:03.268 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17507 mm
17-03-17 21:14:03.268 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:14:03.268 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:03.268 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:14:03.268 -07 000000424 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 21:14:03.268 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38243, sync = True, waitForSettling = False)
17-03-17 21:14:03.268 -07 000000512 INF: Z Motor: Moving to -0.175065 mm, started at -0.168755 mm, distance = -6.31 um
17-03-17 21:14:03.268 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:03.278 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:14:03.278 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:03.278 -07 000000626 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:14:03.288 -07 000000512 INF: FPGA: Xmit ZDACW 38243\n [Z Motor]
17-03-17 21:14:03.288 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:14:03.288 -07 000000424 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:03.288 -07 000000424 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:14:03.288 -07 000000424 INF: Y Motor: Moving 1344 steps-20
17-03-17 21:14:03.288 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:14:03.298 -07 000000012 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:14:03.298 -07 000000512 INF: FPGA: 'ZDACW 38243' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:14:03.308 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:14:03.318 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:03.318 -07 000000576 INF: FPGA: Recv ZDACR 38243
17-03-17 21:14:03.328 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:14:03.328 -07 000000512 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 21:14:03.498 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:14:03.498 -07 000000012 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:14:03.598 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:14:03.598 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:14:03.598 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:03.598 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:03.598 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:14:03.598 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:14:03.598 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:03.608 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:03.608 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 536 ms.
17-03-17 21:14:03.608 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:14:03.678 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 21:14:03.678 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:14:03.718 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:03.728 -07 000000459 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:14:03.728 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 21:14:03.728 -07 000000424 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:03.728 -07 000000424 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:14:03.728 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec
17-03-17 21:14:04.678 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:04.678 -07 000000576 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:14:04.688 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:04.688 -07 000000424 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:04.708 -07 000000424 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:14:04.708 -07 000000424 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:14:04.708 -07 000000424 INF: Y Motor: Moved to 70.6880 after 1438 ms (table move)
17-03-17 21:14:04.708 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175065 mm (DAC = 38243)
17-03-17 21:14:04.708 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:04.718 -07 000000431 INF: FPGA: Recv ZSGSRD 36544
17-03-17 21:14:04.718 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:14:04.718 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:04.718 -07 000000458 INF: FPGA: Recv ZSGSRD 36543
17-03-17 21:14:04.728 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:04.728 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:04.728 -07 000000608 INF: FPGA: Recv ZSGSRD 36542
17-03-17 21:14:04.738 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:04.738 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:04.738 -07 000000480 INF: FPGA: Recv ZSGSRD 36547
17-03-17 21:14:04.748 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:04.748 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:04.748 -07 000000431 INF: FPGA: Recv ZSGSRD 36541
17-03-17 21:14:04.758 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:04.758 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:04.758 -07 000000475 INF: FPGA: Recv ZSGSRD 36542
17-03-17 21:14:04.768 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:04.768 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:04.768 -07 000000459 INF: FPGA: Recv ZSGSRD 36546
17-03-17 21:14:04.778 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:04.778 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:04.778 -07 000000438 INF: FPGA: Recv ZSGSRD 36531
17-03-17 21:14:04.788 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:04.788 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:04.788 -07 000000458 INF: FPGA: Recv ZSGSRD 36542
17-03-17 21:14:04.798 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:04.798 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:04.798 -07 000000512 INF: FPGA: Recv ZSGSRD 36542
17-03-17 21:14:04.808 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:04.808 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:04.808 -07 000000012 INF: FPGA: Recv ZPIEZORD 32851
17-03-17 21:14:04.818 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:04.818 -07 000000415 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.836 V. Piezo Error = -8.2 V.
17-03-17 21:14:04.818 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36542 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36542 (-174.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36531 (-174.1 uncal um), Max = 36547 (-174.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 21:14:04.818 -07 000000415 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36542, posNoise = 5, negNoise = 11
17-03-17 21:14:04.818 -07 000000415 INF: Z Motor: After move to -0.175065, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:04.818 -07 000000415 INF: Z Motor: Settle wait time = 1441 ms, measure time = 104 ms (allowed 150 ms), total time = 1545 ms
17-03-17 21:14:04.818 -07 000000415 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:14:04.868 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 21:14:04.868 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:14:04.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:04.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:04.868 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:04.868 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:04.868 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:14:04.868 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:04.878 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:04.878 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:14:04.878 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:14:04.878 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:14:04.888 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:14:04.888 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:14:04.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:14:04.938 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:14:05.138 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:14:05.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:14:05.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:14:05.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 21:14:05.178 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:14:05.178 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 21:14:05.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 21:14:05.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 21:14:05.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:05.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:14:05.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 21:14:05.278 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:05.278 -07 000000438 INF: Autofocus start
17-03-17 21:14:05.278 -07 000000438 INF: MeasureProfile start
17-03-17 21:14:05.278 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:05.288 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:14:05.288 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:14:05.288 -07 000000438 INF: MeasureProfile done
17-03-17 21:14:05.288 -07 000000438 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:14:05.288 -07 000000438 INF: Autofocus finished
17-03-17 21:14:05.488 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:14:05.488 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:14:05.488 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.175076912095364. ----------
17-03-17 21:14:05.498 -07 000000610 INF: Cycle	48	Tile	14	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:14:05.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36758, sync = True, waitForSettling = True)
17-03-17 21:14:05.498 -07 000000610 INF: Z Motor: Moving to -0.168267 mm, started at -0.175077 mm, distance = 6.81 um
17-03-17 21:14:05.498 -07 000000610 INF: FPGA: Xmit ZDACW 36758\n [Z Motor]
17-03-17 21:14:05.498 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:14:05.508 -07 000000610 INF: FPGA: 'ZDACW 36758' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:14:05.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:05.508 -07 000000458 INF: FPGA: Recv ZDACR 36758
17-03-17 21:14:05.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:05.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:14:05.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:05.668 -07 000000382 INF: FPGA: Recv ZSGSRD 35481
17-03-17 21:14:05.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:05.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:05.678 -07 000000424 INF: FPGA: Recv ZSGSRD 35476
17-03-17 21:14:05.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:05.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:05.688 -07 000000608 INF: FPGA: Recv ZSGSRD 35484
17-03-17 21:14:05.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:05.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:05.698 -07 000000415 INF: FPGA: Recv ZSGSRD 35485
17-03-17 21:14:05.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:05.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:05.708 -07 000000480 INF: FPGA: Recv ZSGSRD 35483
17-03-17 21:14:05.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:05.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:05.718 -07 000000382 INF: FPGA: Recv ZSGSRD 35481
17-03-17 21:14:05.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:05.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:05.728 -07 000000438 INF: FPGA: Recv ZSGSRD 35485
17-03-17 21:14:05.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:05.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:05.738 -07 000000576 INF: FPGA: Recv ZSGSRD 35486
17-03-17 21:14:05.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:14:05.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:05.748 -07 000000626 INF: FPGA: Recv ZSGSRD 35484
17-03-17 21:14:05.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:05.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:05.758 -07 000000501 INF: FPGA: Recv ZSGSRD 35485
17-03-17 21:14:05.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:05.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:05.768 -07 000000458 INF: FPGA: Recv ZPIEZORD 31504
17-03-17 21:14:05.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:05.778 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.609 V. Piezo Error = -8.8 V.
17-03-17 21:14:05.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35483 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35484 (-167.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35476 (-167.4 uncal um), Max = 35486 (-167.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:14:05.778 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35483, posNoise = 3, negNoise = 7
17-03-17 21:14:05.778 -07 000000610 INF: Z Motor: After move to -0.168267, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:05.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:14:05.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:05.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:05.778 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:05.778 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:05.778 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:14:05.778 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:14:05.778 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:05.778 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:14:05.778 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:05.778 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:14:05.778 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:14:05.778 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:14:05.788 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:14:05.788 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:14:05.788 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:14:05.788 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:14:05.798 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:14:05.798 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:14:05.798 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:14:05.798 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:14:05.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 36935 150\n [Camera]
17-03-17 21:14:05.998 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:14:06.428 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 622
17-03-17 21:14:06.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 622
17-03-17 21:14:06.428 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:06.428 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 622
17-03-17 21:14:06.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 622
17-03-17 21:14:06.428 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:06.438 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:06.438 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-17 21:14:06.438 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:06.438 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) start.
17-03-17 21:14:06.618 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36935 813
17-03-17 21:14:06.768 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:14:06.818 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:14:06.818 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:14:06.818 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:06.828 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms.
17-03-17 21:14:06.838 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:14:06.838 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:14:06.838 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:06.848 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:14:06.848 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 21:14:06.848 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 21:14:06.858 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:14:06.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:14:06.978 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:14:06.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:14:06.978 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:07.098 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:14:07.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:14:07.098 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:07.098 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:07.098 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:14:07.098 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:07.108 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:14:07.168 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:14:07.168 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:14:07.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 36935 150' command took 2 ms to send, 1364 ms to get response, and 1368 ms overall
17-03-17 21:14:07.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:14:07.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.168273671437239. ------
17-03-17 21:14:07.168 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:07.168 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17468 mm
17-03-17 21:14:07.168 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:14:07.178 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:14:07.178 -07 000000480 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 21:14:07.178 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:07.178 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:14:07.178 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:07.178 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38158, sync = True, waitForSettling = False)
17-03-17 21:14:07.178 -07 000000382 INF: Z Motor: Moving to -0.174676 mm, started at -0.168274 mm, distance = -6.40 um
17-03-17 21:14:07.178 -07 000000459 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:14:07.188 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:14:07.188 -07 000000382 INF: FPGA: Xmit ZDACW 38158\n [Z Motor]
17-03-17 21:14:07.188 -07 000000480 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:07.188 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:14:07.188 -07 000000480 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:14:07.188 -07 000000480 INF: Y Motor: Moving 1351 steps-30
17-03-17 21:14:07.198 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:14:07.198 -07 000000382 INF: FPGA: 'ZDACW 38158' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:14:07.208 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:14:07.218 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:07.218 -07 000000547 INF: FPGA: Recv ZDACR 38158
17-03-17 21:14:07.228 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:14:07.228 -07 000000382 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 21:14:07.398 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:14:07.398 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-17 21:14:07.418 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.994908,
17-03-17 21:14:07.478 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:14:07.478 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:14:07.478 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:07.478 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:14:07.478 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:14:07.478 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:07.488 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:07.488 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:07.488 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 21:14:07.488 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:14:07.578 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:14:07.578 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 21:14:07.618 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:07.628 -07 000000431 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:14:07.628 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 21:14:07.628 -07 000000480 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:07.628 -07 000000480 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:14:07.628 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.845 mm, average velocity = 2.160 mm/sec
17-03-17 21:14:08.578 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:08.578 -07 000000429 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:14:08.588 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:08.588 -07 000000480 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:08.608 -07 000000480 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:14:08.608 -07 000000480 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:14:08.608 -07 000000480 INF: Y Motor: Moved to 71.5186 after 1432 ms (table move)
17-03-17 21:14:08.608 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174676 mm (DAC = 38158)
17-03-17 21:14:08.608 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:08.618 -07 000000424 INF: FPGA: Recv ZSGSRD 36484
17-03-17 21:14:08.618 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 21:14:08.618 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:08.618 -07 000000458 INF: FPGA: Recv ZSGSRD 36478
17-03-17 21:14:08.628 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:14:08.628 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:08.628 -07 000000475 INF: FPGA: Recv ZSGSRD 36474
17-03-17 21:14:08.638 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:08.638 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:08.638 -07 000000480 INF: FPGA: Recv ZSGSRD 36485
17-03-17 21:14:08.648 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:08.648 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:08.648 -07 000000438 INF: FPGA: Recv ZSGSRD 36484
17-03-17 21:14:08.658 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:08.658 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:08.658 -07 000000458 INF: FPGA: Recv ZSGSRD 36484
17-03-17 21:14:08.668 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:08.668 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:08.668 -07 000000012 INF: FPGA: Recv ZSGSRD 36479
17-03-17 21:14:08.678 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:08.678 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:08.678 -07 000000608 INF: FPGA: Recv ZSGSRD 36486
17-03-17 21:14:08.688 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:14:08.688 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:08.688 -07 000000459 INF: FPGA: Recv ZSGSRD 36477
17-03-17 21:14:08.698 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:08.698 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:08.698 -07 000000438 INF: FPGA: Recv ZSGSRD 36477
17-03-17 21:14:08.708 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:08.708 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:08.708 -07 000000501 INF: FPGA: Recv ZPIEZORD 32802
17-03-17 21:14:08.718 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:08.718 -07 000000569 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.823 V. Piezo Error = -8.2 V.
17-03-17 21:14:08.718 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36481 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36482 (-173.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36474 (-173.8 uncal um), Max = 36486 (-173.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:14:08.718 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36481, posNoise = 5, negNoise = 7
17-03-17 21:14:08.718 -07 000000569 INF: Z Motor: After move to -0.174676, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:08.718 -07 000000569 INF: Z Motor: Settle wait time = 1433 ms, measure time = 104 ms (allowed 150 ms), total time = 1537 ms
17-03-17 21:14:08.718 -07 000000569 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:14:08.768 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 21:14:08.768 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:14:08.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:08.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:08.768 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:08.768 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:08.768 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:14:08.768 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:08.768 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:08.768 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:14:08.778 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:14:08.778 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:14:08.788 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-17 21:14:08.788 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 20 ms.
17-03-17 21:14:08.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:14:08.838 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:14:09.038 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:14:09.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:14:09.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:14:09.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 21:14:09.078 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:14:09.078 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:14:09.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 21:14:09.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:14:09.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:09.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:14:09.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 21:14:09.278 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:09.278 -07 000000475 INF: Autofocus start
17-03-17 21:14:09.278 -07 000000475 INF: MeasureProfile start
17-03-17 21:14:09.278 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:09.288 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:14:09.288 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:14:09.298 -07 000000475 INF: MeasureProfile done
17-03-17 21:14:09.298 -07 000000475 INF: X=-32  Z correction [um]=-0.2344
17-03-17 21:14:09.298 -07 000000475 INF: Autofocus finished
17-03-17 21:14:09.488 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:14:09.488 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:14:09.488 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174685035154716. ----------
17-03-17 21:14:09.488 -07 000000610 INF: Cycle	48	Tile	15	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:14:09.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36619, sync = True, waitForSettling = True)
17-03-17 21:14:09.498 -07 000000610 INF: Z Motor: Moving to -0.167631 mm, started at -0.174685 mm, distance = 7.05 um
17-03-17 21:14:09.498 -07 000000610 INF: FPGA: Xmit ZDACW 36619\n [Z Motor]
17-03-17 21:14:09.498 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:14:09.508 -07 000000610 INF: FPGA: 'ZDACW 36619' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:14:09.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:09.508 -07 000000608 INF: FPGA: Recv ZDACR 36619
17-03-17 21:14:09.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:09.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:14:09.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:09.668 -07 000000576 INF: FPGA: Recv ZSGSRD 35385
17-03-17 21:14:09.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:09.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:09.678 -07 000000475 INF: FPGA: Recv ZSGSRD 35383
17-03-17 21:14:09.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:09.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:09.688 -07 000000458 INF: FPGA: Recv ZSGSRD 35382
17-03-17 21:14:09.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:09.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:09.698 -07 000000415 INF: FPGA: Recv ZSGSRD 35381
17-03-17 21:14:09.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:09.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:09.708 -07 000000512 INF: FPGA: Recv ZSGSRD 35385
17-03-17 21:14:09.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:09.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:09.718 -07 000000608 INF: FPGA: Recv ZSGSRD 35382
17-03-17 21:14:09.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:09.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:09.728 -07 000000429 INF: FPGA: Recv ZSGSRD 35389
17-03-17 21:14:09.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:09.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:09.738 -07 000000501 INF: FPGA: Recv ZSGSRD 35389
17-03-17 21:14:09.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:09.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:09.748 -07 000000431 INF: FPGA: Recv ZSGSRD 35383
17-03-17 21:14:09.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:09.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:09.758 -07 000000512 INF: FPGA: Recv ZSGSRD 35388
17-03-17 21:14:09.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:09.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:09.768 -07 000000480 INF: FPGA: Recv ZPIEZORD 31390
17-03-17 21:14:09.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:09.778 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.588 V. Piezo Error = -8.8 V.
17-03-17 21:14:09.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35385 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35384 (-166.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35381 (-166.7 uncal um), Max = 35389 (-166.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:14:09.778 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35385, posNoise = 4, negNoise = 4
17-03-17 21:14:09.778 -07 000000610 INF: Z Motor: After move to -0.167631, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:09.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:14:09.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:09.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:09.778 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:09.778 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:09.778 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:14:09.778 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:09.778 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:14:09.778 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:14:09.778 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:14:09.778 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:14:09.778 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:14:09.778 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:14:09.788 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:14:09.788 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:14:09.788 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:14:09.788 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:14:09.788 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:14:09.788 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:14:09.788 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:14:09.788 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:14:09.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 36796 150\n [Camera]
17-03-17 21:14:09.998 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:14:10.428 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:14:10.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:14:10.428 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:10.428 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:10.428 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 21:14:10.428 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:14:10.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:14:10.428 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:10.428 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:10.428 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 21:14:10.618 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36796 814
17-03-17 21:14:10.768 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:14:10.808 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:14:10.808 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:14:10.808 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:10.808 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:10.808 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:14:10.808 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:14:10.808 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:14:10.808 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:10.818 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:10.818 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:14:10.968 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:14:10.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:14:10.968 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:11.088 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:14:11.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:14:11.088 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:11.088 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:11.088 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:14:11.088 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:11.088 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:14:11.158 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:14:11.168 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:14:11.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 36796 150' command took 2 ms to send, 1360 ms to get response, and 1368 ms overall
17-03-17 21:14:11.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:14:11.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167644098647346. ------
17-03-17 21:14:11.168 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:11.168 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17385 mm
17-03-17 21:14:11.168 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:14:11.168 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:14:11.168 -07 000000475 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 21:14:11.168 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37978, sync = True, waitForSettling = False)
17-03-17 21:14:11.168 -07 000000512 INF: Z Motor: Moving to -0.173852 mm, started at -0.167644 mm, distance = -6.21 um
17-03-17 21:14:11.168 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:11.178 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:14:11.178 -07 000000512 INF: FPGA: Xmit ZDACW 37978\n [Z Motor]
17-03-17 21:14:11.178 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:14:11.188 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:11.188 -07 000000512 INF: FPGA: 'ZDACW 37978' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:14:11.188 -07 000000459 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:14:11.198 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:14:11.198 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 21:14:11.198 -07 000000475 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:11.198 -07 000000475 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:14:11.198 -07 000000475 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:14:11.208 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:11.208 -07 000000431 INF: FPGA: Recv ZDACR 37978
17-03-17 21:14:11.218 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:14:11.218 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:14:11.218 -07 000000512 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 21:14:11.398 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:14:11.398 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:14:11.468 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:14:11.468 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:14:11.468 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:11.468 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:14:11.468 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:14:11.468 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:11.468 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:11.478 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:11.478 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-17 21:14:11.478 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:14:11.588 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 21:14:11.588 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 21:14:11.628 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:11.628 -07 000000424 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:14:11.638 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:14:11.638 -07 000000475 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:11.638 -07 000000475 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:14:11.638 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.142 mm/sec
17-03-17 21:14:11.858 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:14:11.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:14:12.588 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:12.588 -07 000000438 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:14:12.598 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:12.598 -07 000000475 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:12.618 -07 000000475 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:14:12.618 -07 000000475 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:14:12.618 -07 000000475 INF: Y Motor: Moved to 72.3491 after 1446 ms (table move)
17-03-17 21:14:12.618 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173852 mm (DAC = 37978)
17-03-17 21:14:12.618 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:12.628 -07 000000547 INF: FPGA: Recv ZSGSRD 36348
17-03-17 21:14:12.628 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 21:14:12.628 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:12.628 -07 000000576 INF: FPGA: Recv ZSGSRD 36358
17-03-17 21:14:12.638 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:14:12.638 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:12.638 -07 000000012 INF: FPGA: Recv ZSGSRD 36351
17-03-17 21:14:12.648 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:12.648 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:12.648 -07 000000569 INF: FPGA: Recv ZSGSRD 36358
17-03-17 21:14:12.658 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:12.658 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:12.658 -07 000000431 INF: FPGA: Recv ZSGSRD 36352
17-03-17 21:14:12.668 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:12.668 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:12.668 -07 000000576 INF: FPGA: Recv ZSGSRD 36351
17-03-17 21:14:12.678 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:12.678 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:12.678 -07 000000012 INF: FPGA: Recv ZSGSRD 36355
17-03-17 21:14:12.688 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:12.688 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:12.688 -07 000000512 INF: FPGA: Recv ZSGSRD 36352
17-03-17 21:14:12.698 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:12.698 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:12.698 -07 000000424 INF: FPGA: Recv ZSGSRD 36355
17-03-17 21:14:12.708 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:12.708 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:12.708 -07 000000608 INF: FPGA: Recv ZSGSRD 36349
17-03-17 21:14:12.718 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:12.718 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:12.718 -07 000000569 INF: FPGA: Recv ZPIEZORD 32677
17-03-17 21:14:12.728 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:12.728 -07 000000626 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.795 V. Piezo Error = -8.1 V.
17-03-17 21:14:12.728 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36353 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36352 (-173.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36348 (-172.9 uncal um), Max = 36358 (-173.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:14:12.728 -07 000000626 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36353, posNoise = 5, negNoise = 5
17-03-17 21:14:12.728 -07 000000626 INF: Z Motor: After move to -0.173852, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:12.728 -07 000000626 INF: Z Motor: Settle wait time = 1449 ms, measure time = 104 ms (allowed 150 ms), total time = 1553 ms
17-03-17 21:14:12.728 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:14:12.778 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 21:14:12.778 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:14:12.778 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.999021,
17-03-17 21:14:12.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:12.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:12.778 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:12.778 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:12.778 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:14:12.778 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:12.778 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:12.778 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:14:12.788 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:14:12.788 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:14:12.788 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:14:12.788 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:14:12.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:14:12.848 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:14:13.048 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:14:13.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:14:13.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:14:13.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) start.
17-03-17 21:14:13.088 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:14:13.088 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:14:13.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 292 ms overall
17-03-17 21:14:13.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:14:13.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:13.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:14:13.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:14:13.188 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:13.188 -07 000000424 INF: Autofocus start
17-03-17 21:14:13.188 -07 000000424 INF: MeasureProfile start
17-03-17 21:14:13.188 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:13.198 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:14:13.198 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:14:13.198 -07 000000424 INF: MeasureProfile done
17-03-17 21:14:13.198 -07 000000424 INF: X=48  Z correction [um]=0.1739867
17-03-17 21:14:13.198 -07 000000424 INF: Autofocus finished
17-03-17 21:14:13.398 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:14:13.398 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:14:13.398 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173862736000571. ----------
17-03-17 21:14:13.398 -07 000000610 INF: Cycle	48	Tile	16	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:14:13.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36529, sync = True, waitForSettling = True)
17-03-17 21:14:13.408 -07 000000610 INF: Z Motor: Moving to -0.167219 mm, started at -0.173863 mm, distance = 6.64 um
17-03-17 21:14:13.408 -07 000000610 INF: FPGA: Xmit ZDACW 36529\n [Z Motor]
17-03-17 21:14:13.408 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:14:13.418 -07 000000610 INF: FPGA: 'ZDACW 36529' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:13.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:13.418 -07 000000480 INF: FPGA: Recv ZDACR 36529
17-03-17 21:14:13.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:13.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:14:13.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:13.578 -07 000000459 INF: FPGA: Recv ZSGSRD 35325
17-03-17 21:14:13.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:13.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:13.588 -07 000000501 INF: FPGA: Recv ZSGSRD 35320
17-03-17 21:14:13.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:13.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:13.598 -07 000000415 INF: FPGA: Recv ZSGSRD 35318
17-03-17 21:14:13.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:13.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:13.608 -07 000000547 INF: FPGA: Recv ZSGSRD 35321
17-03-17 21:14:13.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:13.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:13.618 -07 000000480 INF: FPGA: Recv ZSGSRD 35320
17-03-17 21:14:13.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:13.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:13.628 -07 000000459 INF: FPGA: Recv ZSGSRD 35316
17-03-17 21:14:13.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:13.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:13.638 -07 000000501 INF: FPGA: Recv ZSGSRD 35313
17-03-17 21:14:13.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:13.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:13.648 -07 000000415 INF: FPGA: Recv ZSGSRD 35324
17-03-17 21:14:13.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:13.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:13.658 -07 000000429 INF: FPGA: Recv ZSGSRD 35317
17-03-17 21:14:13.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:13.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:13.668 -07 000000431 INF: FPGA: Recv ZSGSRD 35318
17-03-17 21:14:13.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:13.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:13.678 -07 000000475 INF: FPGA: Recv ZPIEZORD 31295
17-03-17 21:14:13.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:13.688 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.574 V. Piezo Error = -8.9 V.
17-03-17 21:14:13.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35319 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35319 (-166.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35313 (-166.3 uncal um), Max = 35325 (-166.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:14:13.688 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35319, posNoise = 6, negNoise = 6
17-03-17 21:14:13.688 -07 000000610 INF: Z Motor: After move to -0.167219, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:13.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:14:13.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:13.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:13.688 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:13.688 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:13.688 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:14:13.688 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:14:13.688 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:14:13.688 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:13.688 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:14:13.688 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:14:13.688 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:13.688 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:14:13.688 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:14:13.688 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:14:13.698 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:14:13.698 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:14:13.708 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:14:13.708 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:14:13.708 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 21:14:13.708 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:14:13.708 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 36705 150\n [Camera]
17-03-17 21:14:13.908 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:14:14.338 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:14:14.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:14:14.338 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:14.338 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:14.338 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 21:14:14.338 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:14:14.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:14:14.338 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:14.338 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:14.338 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 21:14:14.528 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36705 813
17-03-17 21:14:14.678 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:14:14.728 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:14:14.728 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:14:14.728 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:14.738 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:14.738 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:14:14.738 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:14:14.738 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:14.738 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:14:14.738 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:14.748 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:14:14.888 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:14:14.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:14:14.888 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:14.998 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:14:14.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:14:14.998 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:14.998 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:14.998 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:14:15.008 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:15.008 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:14:15.078 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:14:15.078 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:14:15.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 36705 150' command took 2 ms to send, 1356 ms to get response, and 1368 ms overall
17-03-17 21:14:15.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:14:15.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.16722010064599. ------
17-03-17 21:14:15.088 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:15.088 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17371 mm
17-03-17 21:14:15.088 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:14:15.088 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:14:15.088 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:15.088 -07 000000576 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 21:14:15.088 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 37946, sync = True, waitForSettling = False)
17-03-17 21:14:15.088 -07 000000438 INF: Z Motor: Moving to -0.173706 mm, started at -0.167220 mm, distance = -6.49 um
17-03-17 21:14:15.098 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:14:15.098 -07 000000438 INF: FPGA: Xmit ZDACW 37946\n [Z Motor]
17-03-17 21:14:15.098 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:14:15.108 -07 000000438 INF: FPGA: 'ZDACW 37946' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:14:15.108 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:15.108 -07 000000431 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:14:15.118 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:14:15.118 -07 000000576 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:15.118 -07 000000576 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:14:15.118 -07 000000576 INF: Y Motor: Moving 1350 steps-28
17-03-17 21:14:15.118 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:14:15.128 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:15.128 -07 000000415 INF: FPGA: Recv ZDACR 37946
17-03-17 21:14:15.138 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:14:15.138 -07 000000438 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 21:14:15.138 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:14:15.318 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:14:15.318 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 21:14:15.398 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:14:15.398 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:14:15.398 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:15.408 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 21:14:15.408 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:14:15.408 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:15.408 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:15.408 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 21:14:15.408 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:15.418 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:14:15.508 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 21:14:15.508 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 21:14:15.548 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:15.548 -07 000000382 INF: FPGA: Recv YRDPOS 149863
17-03-17 21:14:15.558 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:14:15.558 -07 000000576 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:15.558 -07 000000576 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 21:14:15.558 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.119 mm/sec
17-03-17 21:14:16.508 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:16.508 -07 000000382 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:14:16.518 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:16.518 -07 000000576 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:16.538 -07 000000576 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:14:16.538 -07 000000576 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:14:16.538 -07 000000576 INF: Y Motor: Moved to 73.1758 after 1447 ms (table move)
17-03-17 21:14:16.538 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173706 mm (DAC = 37946)
17-03-17 21:14:16.538 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:16.548 -07 000000512 INF: FPGA: Recv ZSGSRD 36332
17-03-17 21:14:16.548 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:14:16.548 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:16.548 -07 000000012 INF: FPGA: Recv ZSGSRD 36327
17-03-17 21:14:16.558 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:16.558 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:16.558 -07 000000459 INF: FPGA: Recv ZSGSRD 36327
17-03-17 21:14:16.568 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:16.568 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:16.568 -07 000000415 INF: FPGA: Recv ZSGSRD 36333
17-03-17 21:14:16.578 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:16.578 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:16.578 -07 000000458 INF: FPGA: Recv ZSGSRD 36337
17-03-17 21:14:16.588 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:16.588 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:16.588 -07 000000012 INF: FPGA: Recv ZSGSRD 36334
17-03-17 21:14:16.598 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:16.598 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:16.598 -07 000000382 INF: FPGA: Recv ZSGSRD 36328
17-03-17 21:14:16.608 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:16.608 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:16.608 -07 000000480 INF: FPGA: Recv ZSGSRD 36327
17-03-17 21:14:16.618 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:16.618 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:16.618 -07 000000501 INF: FPGA: Recv ZSGSRD 36323
17-03-17 21:14:16.628 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:16.628 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:16.628 -07 000000569 INF: FPGA: Recv ZSGSRD 36323
17-03-17 21:14:16.638 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:16.638 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:16.638 -07 000000626 INF: FPGA: Recv ZPIEZORD 32642
17-03-17 21:14:16.648 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:16.648 -07 000000547 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.790 V. Piezo Error = -8.2 V.
17-03-17 21:14:16.648 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36329 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36328 (-172.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36323 (-172.8 uncal um), Max = 36337 (-172.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:14:16.648 -07 000000547 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36329, posNoise = 8, negNoise = 6
17-03-17 21:14:16.648 -07 000000547 INF: Z Motor: After move to -0.173706, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:16.648 -07 000000547 INF: Z Motor: Settle wait time = 1449 ms, measure time = 104 ms (allowed 150 ms), total time = 1553 ms
17-03-17 21:14:16.648 -07 000000547 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:14:16.698 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 21:14:16.698 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:14:16.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:16.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:16.698 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:16.698 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:16.698 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:14:16.698 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:16.698 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:14:16.698 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:14:16.708 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:14:16.708 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:14:16.708 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:14:16.708 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:14:16.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:14:16.758 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:14:16.858 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:14:16.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:14:16.958 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:14:16.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:14:16.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:14:16.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 21:14:16.998 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:14:16.998 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:14:16.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 21:14:17.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:14:17.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:17.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:14:17.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:14:17.098 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:17.098 -07 000000547 INF: Autofocus start
17-03-17 21:14:17.098 -07 000000547 INF: MeasureProfile start
17-03-17 21:14:17.098 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:17.108 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:14:17.108 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:14:17.108 -07 000000547 INF: MeasureProfile done
17-03-17 21:14:17.108 -07 000000547 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:14:17.108 -07 000000547 INF: Autofocus finished
17-03-17 21:14:17.308 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:14:17.308 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:14:17.308 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173708554909169. ----------
17-03-17 21:14:17.308 -07 000000610 INF: Cycle	48	Tile	17	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:14:17.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36461, sync = True, waitForSettling = True)
17-03-17 21:14:17.318 -07 000000610 INF: Z Motor: Moving to -0.166908 mm, started at -0.173709 mm, distance = 6.80 um
17-03-17 21:14:17.318 -07 000000610 INF: FPGA: Xmit ZDACW 36461\n [Z Motor]
17-03-17 21:14:17.318 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:14:17.328 -07 000000610 INF: FPGA: 'ZDACW 36461' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:17.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:17.328 -07 000000569 INF: FPGA: Recv ZDACR 36461
17-03-17 21:14:17.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:17.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:14:17.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:17.488 -07 000000415 INF: FPGA: Recv ZSGSRD 35272
17-03-17 21:14:17.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:17.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:17.498 -07 000000458 INF: FPGA: Recv ZSGSRD 35275
17-03-17 21:14:17.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:17.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:17.508 -07 000000576 INF: FPGA: Recv ZSGSRD 35267
17-03-17 21:14:17.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:17.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:17.518 -07 000000431 INF: FPGA: Recv ZSGSRD 35266
17-03-17 21:14:17.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:17.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:17.528 -07 000000501 INF: FPGA: Recv ZSGSRD 35273
17-03-17 21:14:17.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:17.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:17.538 -07 000000512 INF: FPGA: Recv ZSGSRD 35272
17-03-17 21:14:17.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:17.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:17.548 -07 000000547 INF: FPGA: Recv ZSGSRD 35272
17-03-17 21:14:17.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:17.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:17.558 -07 000000475 INF: FPGA: Recv ZSGSRD 35275
17-03-17 21:14:17.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:17.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:17.568 -07 000000480 INF: FPGA: Recv ZSGSRD 35270
17-03-17 21:14:17.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:17.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:17.578 -07 000000626 INF: FPGA: Recv ZSGSRD 35273
17-03-17 21:14:17.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:17.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:17.588 -07 000000459 INF: FPGA: Recv ZPIEZORD 31238
17-03-17 21:14:17.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:17.598 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.564 V. Piezo Error = -8.9 V.
17-03-17 21:14:17.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35272 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35272 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35266 (-166.0 uncal um), Max = 35275 (-166.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:14:17.598 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35272, posNoise = 3, negNoise = 6
17-03-17 21:14:17.598 -07 000000610 INF: Z Motor: After move to -0.166908, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:17.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:14:17.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:17.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:17.598 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:17.598 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:17.598 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:14:17.598 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:14:17.598 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:17.598 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:14:17.598 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:17.598 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:14:17.598 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:14:17.598 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:14:17.598 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:14:17.598 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:14:17.598 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:14:17.598 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:14:17.608 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:14:17.608 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:14:17.618 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 21:14:17.618 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:14:17.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 36638 150\n [Camera]
17-03-17 21:14:17.818 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 21:14:18.158 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.993549,
17-03-17 21:14:18.248 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:14:18.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:14:18.248 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:18.248 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:18.248 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 21:14:18.248 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:14:18.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:14:18.248 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:18.248 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:18.248 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 21:14:18.438 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36638 813
17-03-17 21:14:18.588 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:14:18.628 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:14:18.628 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:14:18.628 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:18.628 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:14:18.628 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:14:18.628 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:18.628 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:18.628 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:18.628 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:14:18.638 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:14:18.798 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:14:18.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:14:18.798 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:18.908 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:14:18.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:14:18.908 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:18.908 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:18.908 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:14:18.908 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:18.908 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:14:18.988 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:14:18.988 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:14:18.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 36638 150' command took 2 ms to send, 1363 ms to get response, and 1369 ms overall
17-03-17 21:14:18.988 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:14:18.988 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166918162675327. ------
17-03-17 21:14:18.998 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:18.998 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17333 mm
17-03-17 21:14:18.998 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:14:18.998 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:18.998 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 37864, sync = True, waitForSettling = False)
17-03-17 21:14:18.998 -07 000000569 INF: Z Motor: Moving to -0.173330 mm, started at -0.166918 mm, distance = -6.41 um
17-03-17 21:14:18.998 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:14:18.998 -07 000000547 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 21:14:19.008 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:19.008 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:19.008 -07 000000382 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:14:19.018 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:14:19.018 -07 000000569 INF: FPGA: Xmit ZDACW 37864\n [Z Motor]
17-03-17 21:14:19.018 -07 000000547 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:19.018 -07 000000547 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:14:19.018 -07 000000547 INF: Y Motor: Moving 1355 steps-35
17-03-17 21:14:19.018 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:14:19.028 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:14:19.028 -07 000000569 INF: FPGA: 'ZDACW 37864' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:14:19.038 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:14:19.048 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:19.048 -07 000000459 INF: FPGA: Recv ZDACR 37864
17-03-17 21:14:19.058 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:14:19.058 -07 000000569 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 21:14:19.228 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:14:19.228 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 21:14:19.308 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:14:19.308 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:14:19.308 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:19.308 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:14:19.308 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:14:19.308 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:19.308 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:19.308 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-17 21:14:19.308 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:19.318 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:14:19.408 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 21:14:19.408 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 21:14:19.438 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:19.448 -07 000000626 INF: FPGA: Recv YRDPOS 151567
17-03-17 21:14:19.448 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:14:19.448 -07 000000547 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:19.448 -07 000000547 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:14:19.448 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-17 21:14:20.398 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:20.398 -07 000000576 INF: FPGA: Recv YRDPOS 151567
17-03-17 21:14:20.408 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:20.408 -07 000000547 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:20.418 -07 000000547 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:14:20.418 -07 000000547 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:14:20.418 -07 000000547 INF: Y Motor: Moved to 74.0073 after 1423 ms (table move)
17-03-17 21:14:20.428 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173330 mm (DAC = 37864)
17-03-17 21:14:20.428 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:20.428 -07 000000431 INF: FPGA: Recv ZSGSRD 36275
17-03-17 21:14:20.438 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:20.438 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:20.438 -07 000000480 INF: FPGA: Recv ZSGSRD 36268
17-03-17 21:14:20.448 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:20.448 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:20.448 -07 000000382 INF: FPGA: Recv ZSGSRD 36278
17-03-17 21:14:20.458 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:20.458 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:20.458 -07 000000438 INF: FPGA: Recv ZSGSRD 36272
17-03-17 21:14:20.468 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:20.468 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:20.468 -07 000000576 INF: FPGA: Recv ZSGSRD 36273
17-03-17 21:14:20.478 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:20.478 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:20.478 -07 000000415 INF: FPGA: Recv ZSGSRD 36277
17-03-17 21:14:20.488 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:20.488 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:20.488 -07 000000431 INF: FPGA: Recv ZSGSRD 36270
17-03-17 21:14:20.498 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:20.498 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:20.498 -07 000000547 INF: FPGA: Recv ZSGSRD 36266
17-03-17 21:14:20.508 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:20.508 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:20.508 -07 000000512 INF: FPGA: Recv ZSGSRD 36272
17-03-17 21:14:20.518 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:20.518 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:20.518 -07 000000424 INF: FPGA: Recv ZSGSRD 36275
17-03-17 21:14:20.528 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:20.528 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:20.528 -07 000000431 INF: FPGA: Recv ZPIEZORD 32529
17-03-17 21:14:20.538 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:20.538 -07 000000458 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.778 V. Piezo Error = -8.3 V.
17-03-17 21:14:20.538 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36273 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36272 (-172.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36266 (-172.4 uncal um), Max = 36278 (-172.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:14:20.538 -07 000000458 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36273, posNoise = 5, negNoise = 7
17-03-17 21:14:20.538 -07 000000458 INF: Z Motor: After move to -0.173330, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:20.538 -07 000000458 INF: Z Motor: Settle wait time = 1426 ms, measure time = 110 ms (allowed 150 ms), total time = 1536 ms
17-03-17 21:14:20.538 -07 000000458 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 21:14:20.578 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1579 ms
17-03-17 21:14:20.578 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:14:20.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:20.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:20.578 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:20.578 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:20.578 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:14:20.578 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:20.578 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:20.578 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:14:20.588 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:14:20.588 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:14:20.598 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:14:20.598 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 21:14:20.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:14:20.648 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:14:20.848 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:14:20.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:14:20.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:14:20.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 21:14:20.888 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:14:20.888 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 21:14:20.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 3 ms to send, 277 ms to get response, and 286 ms overall
17-03-17 21:14:20.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:14:20.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:20.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:14:20.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:14:20.988 -07 000000475 INF: Autofocus start
17-03-17 21:14:20.988 -07 000000475 INF: MeasureProfile start
17-03-17 21:14:20.988 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:20.988 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:20.998 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:14:20.998 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:14:20.998 -07 000000475 INF: MeasureProfile done
17-03-17 21:14:20.998 -07 000000475 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 21:14:20.998 -07 000000475 INF: Autofocus finished
17-03-17 21:14:21.198 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:14:21.198 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:14:21.198 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.17334879902923. ----------
17-03-17 21:14:21.198 -07 000000610 INF: Cycle	48	Tile	18	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:14:21.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36344, sync = True, waitForSettling = True)
17-03-17 21:14:21.208 -07 000000610 INF: Z Motor: Moving to -0.166372 mm, started at -0.173349 mm, distance = 6.98 um
17-03-17 21:14:21.208 -07 000000610 INF: FPGA: Xmit ZDACW 36344\n [Z Motor]
17-03-17 21:14:21.208 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:14:21.218 -07 000000610 INF: FPGA: 'ZDACW 36344' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:21.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:21.218 -07 000000429 INF: FPGA: Recv ZDACR 36344
17-03-17 21:14:21.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:21.228 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:14:21.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:21.378 -07 000000501 INF: FPGA: Recv ZSGSRD 35191
17-03-17 21:14:21.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:21.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:21.388 -07 000000431 INF: FPGA: Recv ZSGSRD 35189
17-03-17 21:14:21.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:21.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:21.398 -07 000000512 INF: FPGA: Recv ZSGSRD 35187
17-03-17 21:14:21.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:21.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:21.408 -07 000000382 INF: FPGA: Recv ZSGSRD 35193
17-03-17 21:14:21.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:21.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:21.418 -07 000000480 INF: FPGA: Recv ZSGSRD 35194
17-03-17 21:14:21.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:21.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:21.428 -07 000000626 INF: FPGA: Recv ZSGSRD 35181
17-03-17 21:14:21.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:14:21.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:21.438 -07 000000458 INF: FPGA: Recv ZSGSRD 35183
17-03-17 21:14:21.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:21.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:21.448 -07 000000475 INF: FPGA: Recv ZSGSRD 35189
17-03-17 21:14:21.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:21.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:21.458 -07 000000576 INF: FPGA: Recv ZSGSRD 35187
17-03-17 21:14:21.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:21.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:21.468 -07 000000424 INF: FPGA: Recv ZSGSRD 35185
17-03-17 21:14:21.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:21.478 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:21.478 -07 000000438 INF: FPGA: Recv ZPIEZORD 31145
17-03-17 21:14:21.488 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:21.488 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.546 V. Piezo Error = -8.9 V.
17-03-17 21:14:21.488 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35188 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35188 (-165.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35181 (-165.5 uncal um), Max = 35194 (-165.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:14:21.488 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35188, posNoise = 6, negNoise = 7
17-03-17 21:14:21.488 -07 000000610 INF: Z Motor: After move to -0.166372, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:21.488 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:14:21.488 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:21.488 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:21.488 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:21.488 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:21.488 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:14:21.488 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:14:21.488 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:14:21.488 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:21.488 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:14:21.488 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:14:21.488 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:14:21.488 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:14:21.488 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:14:21.488 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:14:21.498 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:14:21.498 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:14:21.498 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:14:21.498 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:14:21.508 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:14:21.508 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:14:21.508 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 36520 150\n [Camera]
17-03-17 21:14:21.708 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:14:21.858 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:14:21.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:14:22.138 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:14:22.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:14:22.138 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:22.138 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:22.138 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 21:14:22.138 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:14:22.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:14:22.138 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:22.138 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:22.138 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 21:14:22.328 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36520 813
17-03-17 21:14:22.478 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:14:22.508 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:14:22.508 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:14:22.508 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:22.518 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:14:22.518 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:14:22.518 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:22.518 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:22.518 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:14:22.518 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:22.528 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:14:22.678 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:14:22.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:14:22.688 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:22.798 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:14:22.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:14:22.798 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:22.798 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:22.798 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:14:22.798 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:22.798 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:14:22.878 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:14:22.878 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:14:22.878 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 36520 150' command took 2 ms to send, 1361 ms to get response, and 1368 ms overall
17-03-17 21:14:22.878 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:14:22.878 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.16637852885542. ------
17-03-17 21:14:22.878 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:22.878 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17272 mm
17-03-17 21:14:22.878 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:14:22.878 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:14:22.878 -07 000000512 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-17 21:14:22.878 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 37730, sync = True, waitForSettling = False)
17-03-17 21:14:22.878 -07 000000458 INF: Z Motor: Moving to -0.172717 mm, started at -0.166379 mm, distance = -6.34 um
17-03-17 21:14:22.878 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:22.888 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:14:22.888 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:22.888 -07 000000501 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:14:22.898 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:14:22.898 -07 000000512 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:22.898 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:14:22.898 -07 000000512 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:14:22.898 -07 000000512 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:14:22.908 -07 000000458 INF: FPGA: Xmit ZDACW 37730\n [Z Motor]
17-03-17 21:14:22.908 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:14:22.918 -07 000000458 INF: FPGA: 'ZDACW 37730' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:14:22.918 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:14:22.928 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:22.928 -07 000000012 INF: FPGA: Recv ZDACR 37730
17-03-17 21:14:22.938 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:14:22.938 -07 000000458 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 21:14:23.098 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:14:23.098 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 215 ms overall
17-03-17 21:14:23.198 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:14:23.198 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:14:23.198 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:23.198 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:14:23.198 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:14:23.198 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:23.198 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:23.198 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:23.208 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-17 21:14:23.208 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:14:23.298 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:14:23.298 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 394 ms overall
17-03-17 21:14:23.318 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:23.318 -07 000000501 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:14:23.328 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:14:23.328 -07 000000512 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:23.328 -07 000000512 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 21:14:23.328 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.145 mm/sec
17-03-17 21:14:23.528 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.989471,
17-03-17 21:14:24.278 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:24.278 -07 000000626 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:14:24.288 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:24.288 -07 000000512 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:24.298 -07 000000512 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:14:24.298 -07 000000512 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:14:24.298 -07 000000512 INF: Y Motor: Moved to 74.8315 after 1418 ms (table move)
17-03-17 21:14:24.308 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172717 mm (DAC = 37730)
17-03-17 21:14:24.308 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:24.308 -07 000000576 INF: FPGA: Recv ZSGSRD 36176
17-03-17 21:14:24.318 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:24.318 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:24.318 -07 000000547 INF: FPGA: Recv ZSGSRD 36172
17-03-17 21:14:24.328 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:24.328 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:24.328 -07 000000459 INF: FPGA: Recv ZSGSRD 36183
17-03-17 21:14:24.338 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:24.338 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:24.338 -07 000000512 INF: FPGA: Recv ZSGSRD 36179
17-03-17 21:14:24.348 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:24.348 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:24.348 -07 000000458 INF: FPGA: Recv ZSGSRD 36179
17-03-17 21:14:24.358 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:24.358 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:24.358 -07 000000429 INF: FPGA: Recv ZSGSRD 36176
17-03-17 21:14:24.368 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:24.368 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:24.368 -07 000000459 INF: FPGA: Recv ZSGSRD 36172
17-03-17 21:14:24.378 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:24.378 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:24.378 -07 000000501 INF: FPGA: Recv ZSGSRD 36174
17-03-17 21:14:24.388 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:24.388 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:24.388 -07 000000431 INF: FPGA: Recv ZSGSRD 36167
17-03-17 21:14:24.398 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:24.398 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:24.398 -07 000000438 INF: FPGA: Recv ZSGSRD 36181
17-03-17 21:14:24.408 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:24.408 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:24.408 -07 000000459 INF: FPGA: Recv ZPIEZORD 32469
17-03-17 21:14:24.418 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:24.418 -07 000000569 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.757 V. Piezo Error = -8.2 V.
17-03-17 21:14:24.418 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36176 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36176 (-171.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36167 (-171.8 uncal um), Max = 36183 (-171.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:14:24.418 -07 000000569 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36176, posNoise = 7, negNoise = 9
17-03-17 21:14:24.418 -07 000000569 INF: Z Motor: After move to -0.172717, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:24.418 -07 000000569 INF: Z Motor: Settle wait time = 1421 ms, measure time = 110 ms (allowed 150 ms), total time = 1531 ms
17-03-17 21:14:24.418 -07 000000569 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 21:14:24.458 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 21:14:24.458 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:14:24.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:24.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:24.458 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:24.458 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:24.458 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:14:24.458 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:24.458 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:24.458 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:14:24.468 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:14:24.468 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:14:24.478 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:14:24.478 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:14:24.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:14:24.528 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:14:24.728 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:14:24.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:14:24.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:14:24.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 21:14:24.768 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:14:24.768 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:14:24.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:14:24.848 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 21:14:24.848 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:24.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:14:24.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 21:14:24.868 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:24.868 -07 000000459 INF: Autofocus start
17-03-17 21:14:24.868 -07 000000459 INF: MeasureProfile start
17-03-17 21:14:24.868 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:24.878 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:14:24.878 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:14:24.878 -07 000000459 INF: MeasureProfile done
17-03-17 21:14:24.878 -07 000000459 INF: X=48  Z correction [um]=0.1739867
17-03-17 21:14:24.878 -07 000000459 INF: Autofocus finished
17-03-17 21:14:25.078 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:14:25.078 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:14:25.088 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.172725650451479. ----------
17-03-17 21:14:25.088 -07 000000610 INF: Cycle	48	Tile	19	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:14:25.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36281, sync = True, waitForSettling = True)
17-03-17 21:14:25.088 -07 000000610 INF: Z Motor: Moving to -0.166084 mm, started at -0.172726 mm, distance = 6.64 um
17-03-17 21:14:25.088 -07 000000610 INF: FPGA: Xmit ZDACW 36281\n [Z Motor]
17-03-17 21:14:25.088 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:14:25.098 -07 000000610 INF: FPGA: 'ZDACW 36281' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:14:25.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:25.098 -07 000000608 INF: FPGA: Recv ZDACR 36281
17-03-17 21:14:25.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:25.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:14:25.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:25.258 -07 000000576 INF: FPGA: Recv ZSGSRD 35139
17-03-17 21:14:25.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:25.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:25.268 -07 000000431 INF: FPGA: Recv ZSGSRD 35146
17-03-17 21:14:25.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:25.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:25.278 -07 000000415 INF: FPGA: Recv ZSGSRD 35140
17-03-17 21:14:25.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:25.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:25.288 -07 000000626 INF: FPGA: Recv ZSGSRD 35138
17-03-17 21:14:25.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:25.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:25.298 -07 000000382 INF: FPGA: Recv ZSGSRD 35146
17-03-17 21:14:25.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:25.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:25.308 -07 000000438 INF: FPGA: Recv ZSGSRD 35139
17-03-17 21:14:25.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:25.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:25.318 -07 000000459 INF: FPGA: Recv ZSGSRD 35142
17-03-17 21:14:25.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:25.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:25.328 -07 000000415 INF: FPGA: Recv ZSGSRD 35142
17-03-17 21:14:25.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:25.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:25.338 -07 000000626 INF: FPGA: Recv ZSGSRD 35141
17-03-17 21:14:25.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:25.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:25.348 -07 000000569 INF: FPGA: Recv ZSGSRD 35145
17-03-17 21:14:25.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:25.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:25.358 -07 000000424 INF: FPGA: Recv ZPIEZORD 31095
17-03-17 21:14:25.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:25.368 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.536 V. Piezo Error = -8.9 V.
17-03-17 21:14:25.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.1 um, Read 10 ADC samples: Avg = 35142 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35142 (-165.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35138 (-165.2 uncal um), Max = 35146 (-165.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:14:25.368 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35142, posNoise = 4, negNoise = 4
17-03-17 21:14:25.368 -07 000000610 INF: Z Motor: After move to -0.166084, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:25.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:14:25.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:25.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:25.368 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:25.368 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:25.368 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:14:25.368 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:25.368 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:14:25.368 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:14:25.368 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:14:25.368 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:14:25.368 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:14:25.368 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:14:25.378 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:14:25.378 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:14:25.378 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:14:25.378 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:14:25.388 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:14:25.388 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:14:25.388 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:14:25.388 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:14:25.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 36458 150\n [Camera]
17-03-17 21:14:25.588 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:14:26.018 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:14:26.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:14:26.018 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:26.018 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:26.018 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 21:14:26.018 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:14:26.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:14:26.018 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:26.018 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:26.018 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 21:14:26.208 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36458 813
17-03-17 21:14:26.358 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:14:26.398 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:14:26.398 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:14:26.398 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:26.408 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:26.408 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:14:26.408 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:14:26.408 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:14:26.408 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:26.408 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:26.418 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:14:26.568 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:14:26.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:14:26.568 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:26.678 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:14:26.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:14:26.678 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:26.678 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:26.678 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:14:26.688 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:26.688 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:14:26.758 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:14:26.758 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:14:26.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 36458 150' command took 2 ms to send, 1362 ms to get response, and 1368 ms overall
17-03-17 21:14:26.858 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:14:26.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:14:27.068 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:14:27.068 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:14:27.068 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:27.068 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 21:14:27.068 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:14:27.068 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:27.078 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:27.078 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 21:14:27.078 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:14:27.078 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:27.088 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:14:27.118 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-17 21:14:27.118 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:14:27.158 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 21:14:27.158 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 21:14:27.158 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:14:27.168 -07 000000475 INF: FPGA: Recv EMCUR 
17-03-17 21:14:27.168 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:14:27.168 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 21:14:27.668 -07 000000415 INF: FPGA: Recv EMIN
17-03-17 21:14:27.668 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 494 ms to get response, and 502 ms overall
17-03-17 21:14:27.668 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 21:14:27.668 -07 000000382 INF: FPGA: Recv EMCUR 
17-03-17 21:14:27.678 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:14:27.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:14:27.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.166083015096899. ------
17-03-17 21:14:27.678 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:27.678 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14047 mm
17-03-17 21:14:27.678 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:14:27.688 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:14:27.688 -07 000000431 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 21:14:27.688 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:27.688 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:14:27.688 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:27.688 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30686, sync = True, waitForSettling = False)
17-03-17 21:14:27.688 -07 000000576 INF: Z Motor: Moving to -0.140472 mm, started at -0.166083 mm, distance = 25.61 um
17-03-17 21:14:27.688 -07 000000501 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:14:27.698 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:14:27.698 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:27.698 -07 000000431 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:27.698 -07 000000431 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 21:14:27.698 -07 000000431 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:14:27.708 -07 000000576 INF: FPGA: Xmit ZDACW 30686\n [Z Motor]
17-03-17 21:14:27.708 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:14:27.718 -07 000000576 INF: FPGA: 'ZDACW 30686' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:14:27.718 -07 000000431 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:14:27.728 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:27.728 -07 000000438 INF: FPGA: Recv ZDACR 30686
17-03-17 21:14:27.738 -07 000000576 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:14:27.738 -07 000000576 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:14:27.898 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:14:27.898 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 21:14:28.898 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.979922,
17-03-17 21:14:29.348 -07 000000438 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 21:14:29.348 -07 000000431 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1622 ms to get response, and 1647 ms overall
17-03-17 21:14:29.348 -07 000000431 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:14:29.348 -07 000000431 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23904 steps (14.940 mm). Slippage = 0.020 mm (0.00%).
17-03-17 21:14:29.348 -07 000000431 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1647 ms, distance = 14.919 mm, average velocity = 9.058 mm/sec
17-03-17 21:14:31.858 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:14:31.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:14:32.198 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:32.198 -07 000000012 INF: FPGA: Recv YRDPOS 122697
17-03-17 21:14:32.208 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:32.208 -07 000000431 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:32.238 -07 000000431 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:14:32.238 -07 000000431 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 21:14:32.238 -07 000000431 INF: Y Motor: Moved to 59.9106 after 4550 ms
17-03-17 21:14:32.238 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140472 mm (DAC = 30686)
17-03-17 21:14:32.238 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:32.238 -07 000000475 INF: FPGA: Recv ZSGSRD 31160
17-03-17 21:14:32.248 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:14:32.248 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:32.248 -07 000000459 INF: FPGA: Recv ZSGSRD 31155
17-03-17 21:14:32.258 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:32.258 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:32.258 -07 000000512 INF: FPGA: Recv ZSGSRD 31158
17-03-17 21:14:32.268 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:32.268 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:32.268 -07 000000431 INF: FPGA: Recv ZSGSRD 31154
17-03-17 21:14:32.278 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:32.278 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:32.278 -07 000000547 INF: FPGA: Recv ZSGSRD 31157
17-03-17 21:14:32.288 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:32.288 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:32.288 -07 000000626 INF: FPGA: Recv ZSGSRD 31157
17-03-17 21:14:32.298 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:32.298 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:32.298 -07 000000458 INF: FPGA: Recv ZSGSRD 31159
17-03-17 21:14:32.308 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:32.308 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:32.308 -07 000000431 INF: FPGA: Recv ZSGSRD 31157
17-03-17 21:14:32.318 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:32.318 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:32.318 -07 000000012 INF: FPGA: Recv ZSGSRD 31156
17-03-17 21:14:32.328 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:32.328 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:32.328 -07 000000569 INF: FPGA: Recv ZSGSRD 31158
17-03-17 21:14:32.338 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:32.338 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:32.338 -07 000000459 INF: FPGA: Recv ZPIEZORD 26904
17-03-17 21:14:32.348 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:32.348 -07 000000415 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.682 V. Piezo Error = -9.3 V.
17-03-17 21:14:32.348 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.5 um, Read 10 ADC samples: Avg = 31157 (-139.7 uncal um), Error = 0.8 uncal um, Median = 31157 (-139.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 31154 (-139.7 uncal um), Max = 31160 (-139.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:14:32.348 -07 000000415 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31157, posNoise = 3, negNoise = 3
17-03-17 21:14:32.348 -07 000000415 INF: Z Motor: After move to -0.140472, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:32.348 -07 000000415 INF: Z Motor: Settle wait time = 4552 ms, measure time = 106 ms (allowed 150 ms), total time = 4658 ms
17-03-17 21:14:32.348 -07 000000415 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 21:14:32.398 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4712 ms
17-03-17 21:14:32.398 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:14:32.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:32.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:32.398 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:32.398 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:32.398 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:14:32.398 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:32.398 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:32.408 -07 000000429 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:14:32.428 -07 000000429 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 21:14:32.428 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:14:32.428 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:14:32.428 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:14:32.448 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:14:32.448 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 21:14:32.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:14:32.488 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:14:32.688 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:14:32.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:14:32.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:14:32.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 21:14:32.728 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:14:32.728 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:14:32.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 21:14:32.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:14:32.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:32.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:14:32.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:14:32.928 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:32.928 -07 000000576 INF: Image SNR check: start
17-03-17 21:14:32.928 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:32.938 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:14:32.938 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:14:32.938 -07 000000576 INF: Image SNR check: pass  [peak (Max-Min)=57.94]
17-03-17 21:14:32.938 -07 000000576 INF: Autofocus start
17-03-17 21:14:32.938 -07 000000576 INF: MeasureProfile start
17-03-17 21:14:32.948 -07 000000576 INF: MeasureProfile done
17-03-17 21:14:32.948 -07 000000576 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:14:32.948 -07 000000576 INF: Autofocus finished
17-03-17 21:14:33.138 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:14:33.138 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:14:33.138 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.140482529711981. ----------
17-03-17 21:14:33.138 -07 000000610 INF: Cycle	48	Tile	1	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:14:33.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29194, sync = True, waitForSettling = True)
17-03-17 21:14:33.148 -07 000000610 INF: Z Motor: Moving to -0.133642 mm, started at -0.140483 mm, distance = 6.84 um
17-03-17 21:14:33.148 -07 000000610 INF: FPGA: Xmit ZDACW 29194\n [Z Motor]
17-03-17 21:14:33.148 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:14:33.158 -07 000000610 INF: FPGA: 'ZDACW 29194' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:33.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:33.158 -07 000000431 INF: FPGA: Recv ZDACR 29194
17-03-17 21:14:33.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:33.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:14:33.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:33.318 -07 000000012 INF: FPGA: Recv ZSGSRD 30096
17-03-17 21:14:33.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:33.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:33.328 -07 000000475 INF: FPGA: Recv ZSGSRD 30092
17-03-17 21:14:33.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:33.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:33.338 -07 000000458 INF: FPGA: Recv ZSGSRD 30090
17-03-17 21:14:33.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:33.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:33.348 -07 000000576 INF: FPGA: Recv ZSGSRD 30092
17-03-17 21:14:33.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:33.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:33.358 -07 000000608 INF: FPGA: Recv ZSGSRD 30093
17-03-17 21:14:33.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:33.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:33.368 -07 000000512 INF: FPGA: Recv ZSGSRD 30096
17-03-17 21:14:33.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:33.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:33.378 -07 000000547 INF: FPGA: Recv ZSGSRD 30089
17-03-17 21:14:33.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:33.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:33.388 -07 000000475 INF: FPGA: Recv ZSGSRD 30092
17-03-17 21:14:33.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:33.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:33.398 -07 000000012 INF: FPGA: Recv ZSGSRD 30093
17-03-17 21:14:33.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:33.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:33.408 -07 000000429 INF: FPGA: Recv ZSGSRD 30090
17-03-17 21:14:33.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:33.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:33.418 -07 000000576 INF: FPGA: Recv ZPIEZORD 25783
17-03-17 21:14:33.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:33.428 -07 000000610 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.455 V. Piezo Error = -9.5 V.
17-03-17 21:14:33.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.6 um, Read 10 ADC samples: Avg = 30092 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30092 (-132.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30089 (-132.8 uncal um), Max = 30096 (-132.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:14:33.428 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30092, posNoise = 4, negNoise = 3
17-03-17 21:14:33.428 -07 000000610 INF: Z Motor: After move to -0.133642, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:33.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:14:33.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:33.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:33.428 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:33.428 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:33.428 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:14:33.428 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:14:33.428 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:14:33.428 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:33.428 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:14:33.428 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:14:33.428 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:33.428 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:14:33.428 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:14:33.428 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:14:33.438 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:14:33.438 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:14:33.448 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 19 ms.
17-03-17 21:14:33.448 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:14:33.448 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:14:33.448 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:14:33.458 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:14:33.458 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 21:14:33.458 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 29370 150\n [Camera]
17-03-17 21:14:33.658 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:14:34.088 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:14:34.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:14:34.088 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:34.088 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:34.088 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 21:14:34.098 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:14:34.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:14:34.098 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:34.098 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:34.098 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 21:14:34.268 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.994908,
17-03-17 21:14:34.288 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29370 813
17-03-17 21:14:34.438 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:14:34.478 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:14:34.478 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:14:34.478 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:34.478 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 21:14:34.478 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:14:34.478 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:34.478 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:34.478 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:14:34.478 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:34.488 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:14:34.638 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:14:34.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:14:34.638 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:34.758 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:14:34.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:14:34.758 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:34.758 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:34.758 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:14:34.758 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:34.758 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:14:34.828 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:14:34.828 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:14:34.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 29370 150' command took 2 ms to send, 1358 ms to get response, and 1368 ms overall
17-03-17 21:14:34.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:14:34.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.133640743781006. ------
17-03-17 21:14:34.838 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:34.838 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.14013 mm
17-03-17 21:14:34.838 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:14:34.838 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:34.838 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:14:34.838 -07 000000475 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 21:14:34.838 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30611, sync = True, waitForSettling = False)
17-03-17 21:14:34.838 -07 000000415 INF: Z Motor: Moving to -0.140128 mm, started at -0.133641 mm, distance = -6.49 um
17-03-17 21:14:34.848 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:34.848 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:14:34.848 -07 000000424 INF: FPGA: Recv YRDPOS 122697
17-03-17 21:14:34.858 -07 000000415 INF: FPGA: Xmit ZDACW 30611\n [Z Motor]
17-03-17 21:14:34.858 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:14:34.858 -07 000000475 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:34.858 -07 000000475 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:14:34.858 -07 000000475 INF: Y Motor: Moving 1331 steps2
17-03-17 21:14:34.858 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:14:34.868 -07 000000415 INF: FPGA: 'ZDACW 30611' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 21:14:34.868 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:14:34.878 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:14:34.888 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:34.888 -07 000000501 INF: FPGA: Recv ZDACR 30611
17-03-17 21:14:34.898 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:14:34.898 -07 000000415 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 21:14:35.068 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:14:35.068 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:14:35.148 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 21:14:35.148 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:14:35.148 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:14:35.148 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:35.148 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:14:35.148 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:35.148 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:14:35.148 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:35.148 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-17 21:14:35.158 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:14:35.248 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 21:14:35.248 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 21:14:35.278 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:35.288 -07 000000458 INF: FPGA: Recv YRDPOS 124380
17-03-17 21:14:35.288 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:14:35.288 -07 000000475 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:35.288 -07 000000475 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 21:14:35.288 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.832 mm, average velocity = 2.112 mm/sec
17-03-17 21:14:36.238 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:36.238 -07 000000501 INF: FPGA: Recv YRDPOS 124380
17-03-17 21:14:36.248 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:36.248 -07 000000475 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:36.268 -07 000000475 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:14:36.268 -07 000000475 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:14:36.268 -07 000000475 INF: Y Motor: Moved to 60.7324 after 1424 ms (table move)
17-03-17 21:14:36.268 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140128 mm (DAC = 30611)
17-03-17 21:14:36.268 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:36.278 -07 000000475 INF: FPGA: Recv ZSGSRD 31112
17-03-17 21:14:36.278 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:14:36.278 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:36.278 -07 000000012 INF: FPGA: Recv ZSGSRD 31102
17-03-17 21:14:36.288 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:36.288 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:36.288 -07 000000512 INF: FPGA: Recv ZSGSRD 31103
17-03-17 21:14:36.298 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:36.298 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:36.298 -07 000000431 INF: FPGA: Recv ZSGSRD 31110
17-03-17 21:14:36.308 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:36.308 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:36.308 -07 000000475 INF: FPGA: Recv ZSGSRD 31105
17-03-17 21:14:36.318 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:36.318 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:36.318 -07 000000576 INF: FPGA: Recv ZSGSRD 31103
17-03-17 21:14:36.328 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:36.328 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:36.328 -07 000000501 INF: FPGA: Recv ZSGSRD 31101
17-03-17 21:14:36.338 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:36.338 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:36.338 -07 000000415 INF: FPGA: Recv ZSGSRD 31091
17-03-17 21:14:36.348 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:36.348 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:36.348 -07 000000547 INF: FPGA: Recv ZSGSRD 31103
17-03-17 21:14:36.358 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:36.358 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:36.358 -07 000000576 INF: FPGA: Recv ZSGSRD 31102
17-03-17 21:14:36.368 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:36.368 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:36.368 -07 000000458 INF: FPGA: Recv ZPIEZORD 27072
17-03-17 21:14:36.378 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:36.378 -07 000000459 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.671 V. Piezo Error = -8.9 V.
17-03-17 21:14:36.378 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.1 um, Read 10 ADC samples: Avg = 31103 (-139.3 uncal um), Error = 0.8 uncal um, Median = 31103 (-139.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 31091 (-139.3 uncal um), Max = 31112 (-139.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 21:14:36.378 -07 000000459 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31103, posNoise = 9, negNoise = 12
17-03-17 21:14:36.378 -07 000000459 INF: Z Motor: After move to -0.140128, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:36.378 -07 000000459 INF: Z Motor: Settle wait time = 1428 ms, measure time = 103 ms (allowed 150 ms), total time = 1531 ms
17-03-17 21:14:36.378 -07 000000459 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:14:36.428 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 21:14:36.428 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:14:36.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:36.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:36.428 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:36.428 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:36.428 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:14:36.428 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:36.428 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:14:36.428 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:14:36.438 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:14:36.438 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:14:36.448 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:14:36.448 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:14:36.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:14:36.498 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:14:36.698 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:14:36.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:14:36.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:14:36.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 21:14:36.738 -07 000000415 INF: FPGA: Recv @CAMSNAP 284
17-03-17 21:14:36.738 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 21:14:36.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 288 ms overall
17-03-17 21:14:36.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:14:36.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:36.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:14:36.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 21:14:36.838 -07 000000569 INF: Autofocus start
17-03-17 21:14:36.838 -07 000000569 INF: MeasureProfile start
17-03-17 21:14:36.838 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:36.838 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:36.848 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:14:36.848 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:14:36.848 -07 000000569 INF: MeasureProfile done
17-03-17 21:14:36.848 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:14:36.848 -07 000000569 INF: Autofocus finished
17-03-17 21:14:36.858 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:14:36.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:14:37.048 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:14:37.048 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:14:37.048 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.140135622256326. ----------
17-03-17 21:14:37.048 -07 000000610 INF: Cycle	48	Tile	2	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:14:37.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29118, sync = True, waitForSettling = True)
17-03-17 21:14:37.058 -07 000000610 INF: Z Motor: Moving to -0.133294 mm, started at -0.140136 mm, distance = 6.84 um
17-03-17 21:14:37.058 -07 000000610 INF: FPGA: Xmit ZDACW 29118\n [Z Motor]
17-03-17 21:14:37.058 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:14:37.068 -07 000000610 INF: FPGA: 'ZDACW 29118' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:14:37.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:37.068 -07 000000480 INF: FPGA: Recv ZDACR 29118
17-03-17 21:14:37.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:37.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:14:37.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:37.228 -07 000000475 INF: FPGA: Recv ZSGSRD 30040
17-03-17 21:14:37.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:37.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:37.238 -07 000000012 INF: FPGA: Recv ZSGSRD 30042
17-03-17 21:14:37.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:37.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:37.248 -07 000000626 INF: FPGA: Recv ZSGSRD 30039
17-03-17 21:14:37.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:37.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:37.258 -07 000000458 INF: FPGA: Recv ZSGSRD 30037
17-03-17 21:14:37.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:37.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:37.268 -07 000000512 INF: FPGA: Recv ZSGSRD 30037
17-03-17 21:14:37.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:37.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:37.278 -07 000000547 INF: FPGA: Recv ZSGSRD 30043
17-03-17 21:14:37.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:37.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:37.288 -07 000000459 INF: FPGA: Recv ZSGSRD 30037
17-03-17 21:14:37.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:37.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:37.298 -07 000000501 INF: FPGA: Recv ZSGSRD 30040
17-03-17 21:14:37.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:37.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:37.308 -07 000000576 INF: FPGA: Recv ZSGSRD 30047
17-03-17 21:14:37.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:37.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:37.318 -07 000000512 INF: FPGA: Recv ZSGSRD 30035
17-03-17 21:14:37.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:37.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:37.328 -07 000000475 INF: FPGA: Recv ZPIEZORD 25700
17-03-17 21:14:37.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:37.338 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.443 V. Piezo Error = -9.5 V.
17-03-17 21:14:37.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30040 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30040 (-132.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30035 (-132.5 uncal um), Max = 30047 (-132.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:14:37.338 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30040, posNoise = 7, negNoise = 5
17-03-17 21:14:37.338 -07 000000610 INF: Z Motor: After move to -0.133294, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:37.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:14:37.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:37.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:37.338 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:37.338 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:37.338 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:14:37.338 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:14:37.338 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:14:37.338 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:37.338 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:14:37.338 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:14:37.338 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:37.338 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:14:37.348 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:14:37.348 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:14:37.348 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:14:37.348 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:14:37.358 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:14:37.358 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:14:37.358 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:14:37.358 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:14:37.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 29295 150\n [Camera]
17-03-17 21:14:37.568 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:14:37.988 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:14:37.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:14:37.998 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:37.998 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:37.998 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 21:14:37.998 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:14:37.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:14:37.998 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:37.998 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:37.998 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 21:14:38.188 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29295 813
17-03-17 21:14:38.338 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:14:38.398 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:14:38.398 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:14:38.398 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:38.398 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 21:14:38.498 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:14:38.498 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:38.508 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 110 ms.
17-03-17 21:14:38.508 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-17 21:14:38.508 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:38.508 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 517 ms.
17-03-17 21:14:38.538 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:14:38.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:14:38.538 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:38.548 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:14:38.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:14:38.548 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:38.548 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:38.548 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:14:38.558 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:38.558 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:14:38.728 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:14:38.728 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:14:38.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 29295 150' command took 2 ms to send, 1359 ms to get response, and 1368 ms overall
17-03-17 21:14:38.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:14:38.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.133306684749634. ------
17-03-17 21:14:38.738 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:38.738 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13969 mm
17-03-17 21:14:38.738 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:14:38.738 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:38.748 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:14:38.748 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:14:38.748 -07 000000012 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 21:14:38.748 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:14:38.748 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30516, sync = True, waitForSettling = False)
17-03-17 21:14:38.748 -07 000000626 INF: Z Motor: Moving to -0.139693 mm, started at -0.133307 mm, distance = -6.39 um
17-03-17 21:14:38.758 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:38.758 -07 000000547 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:14:38.768 -07 000000626 INF: FPGA: Xmit ZDACW 30516\n [Z Motor]
17-03-17 21:14:38.768 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:14:38.768 -07 000000012 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:38.768 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:14:38.768 -07 000000012 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:14:38.768 -07 000000012 INF: Y Motor: Moving 1344 steps-21
17-03-17 21:14:38.778 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:14:38.778 -07 000000626 INF: FPGA: 'ZDACW 30516' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:14:38.788 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:38.788 -07 000000547 INF: FPGA: Recv ZDACR 30516
17-03-17 21:14:38.798 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:14:38.798 -07 000000626 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 21:14:38.938 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 21:14:38.938 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:14:38.938 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:38.938 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:14:38.938 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:14:38.938 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:38.948 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:38.948 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:14:38.948 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:14:38.948 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:38.948 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:14:38.948 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 21:14:39.148 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 21:14:39.148 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 21:14:39.188 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:39.188 -07 000000547 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:14:39.198 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:14:39.198 -07 000000012 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:39.198 -07 000000012 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:14:39.198 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.840 mm, average velocity = 2.188 mm/sec
17-03-17 21:14:39.648 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.020806,
17-03-17 21:14:40.148 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:40.148 -07 000000501 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:14:40.158 -07 000000012 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:40.158 -07 000000012 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:40.178 -07 000000012 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:14:40.178 -07 000000012 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:14:40.178 -07 000000012 INF: Y Motor: Moved to 61.5635 after 1432 ms (table move)
17-03-17 21:14:40.178 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139693 mm (DAC = 30516)
17-03-17 21:14:40.178 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:40.188 -07 000000459 INF: FPGA: Recv ZSGSRD 31039
17-03-17 21:14:40.188 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:14:40.188 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:40.188 -07 000000012 INF: FPGA: Recv ZSGSRD 31035
17-03-17 21:14:40.198 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:40.198 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:40.198 -07 000000429 INF: FPGA: Recv ZSGSRD 31035
17-03-17 21:14:40.208 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:40.208 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:40.208 -07 000000438 INF: FPGA: Recv ZSGSRD 31038
17-03-17 21:14:40.218 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:40.218 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:40.218 -07 000000459 INF: FPGA: Recv ZSGSRD 31044
17-03-17 21:14:40.228 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:40.228 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:40.228 -07 000000012 INF: FPGA: Recv ZSGSRD 31040
17-03-17 21:14:40.238 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:40.238 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:40.238 -07 000000512 INF: FPGA: Recv ZSGSRD 31035
17-03-17 21:14:40.248 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:40.248 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:40.248 -07 000000424 INF: FPGA: Recv ZSGSRD 31036
17-03-17 21:14:40.258 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:40.258 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:40.258 -07 000000459 INF: FPGA: Recv ZSGSRD 31026
17-03-17 21:14:40.268 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:40.268 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:40.268 -07 000000475 INF: FPGA: Recv ZSGSRD 31035
17-03-17 21:14:40.278 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:40.278 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:40.278 -07 000000458 INF: FPGA: Recv ZPIEZORD 27002
17-03-17 21:14:40.288 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:40.288 -07 000000415 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.656 V. Piezo Error = -8.9 V.
17-03-17 21:14:40.288 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31036 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31036 (-138.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 31026 (-138.8 uncal um), Max = 31044 (-139.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:14:40.288 -07 000000415 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31036, posNoise = 8, negNoise = 10
17-03-17 21:14:40.288 -07 000000415 INF: Z Motor: After move to -0.139693, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:40.288 -07 000000415 INF: Z Motor: Settle wait time = 1435 ms, measure time = 104 ms (allowed 150 ms), total time = 1539 ms
17-03-17 21:14:40.288 -07 000000415 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:14:40.338 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 21:14:40.338 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:14:40.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:40.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:40.338 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:40.338 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:40.338 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:14:40.338 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:40.338 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:40.338 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:14:40.348 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:14:40.348 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:14:40.358 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:14:40.358 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:14:40.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:14:40.408 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:14:40.608 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:14:40.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:14:40.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:14:40.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 21:14:40.648 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:14:40.648 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 21:14:40.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:14:40.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 21:14:40.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:40.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:14:40.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 21:14:40.748 -07 000000576 INF: Autofocus start
17-03-17 21:14:40.748 -07 000000576 INF: MeasureProfile start
17-03-17 21:14:40.748 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:40.748 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:40.758 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:14:40.758 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:14:40.758 -07 000000576 INF: MeasureProfile done
17-03-17 21:14:40.758 -07 000000576 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:14:40.758 -07 000000576 INF: Autofocus finished
17-03-17 21:14:40.958 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:14:40.958 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:14:40.958 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.139705200042828. ----------
17-03-17 21:14:40.958 -07 000000610 INF: Cycle	48	Tile	3	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:14:40.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29024, sync = True, waitForSettling = True)
17-03-17 21:14:40.968 -07 000000610 INF: Z Motor: Moving to -0.132863 mm, started at -0.139705 mm, distance = 6.84 um
17-03-17 21:14:40.968 -07 000000610 INF: FPGA: Xmit ZDACW 29024\n [Z Motor]
17-03-17 21:14:40.968 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:14:40.978 -07 000000610 INF: FPGA: 'ZDACW 29024' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:14:40.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:40.978 -07 000000424 INF: FPGA: Recv ZDACR 29024
17-03-17 21:14:40.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:40.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:14:41.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:41.138 -07 000000576 INF: FPGA: Recv ZSGSRD 29973
17-03-17 21:14:41.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:41.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:41.148 -07 000000459 INF: FPGA: Recv ZSGSRD 29969
17-03-17 21:14:41.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:41.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:41.158 -07 000000012 INF: FPGA: Recv ZSGSRD 29970
17-03-17 21:14:41.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:41.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:41.168 -07 000000415 INF: FPGA: Recv ZSGSRD 29965
17-03-17 21:14:41.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:41.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:41.178 -07 000000438 INF: FPGA: Recv ZSGSRD 29977
17-03-17 21:14:41.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:41.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:41.188 -07 000000512 INF: FPGA: Recv ZSGSRD 29972
17-03-17 21:14:41.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:41.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:41.198 -07 000000475 INF: FPGA: Recv ZSGSRD 29968
17-03-17 21:14:41.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:41.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:41.208 -07 000000431 INF: FPGA: Recv ZSGSRD 29974
17-03-17 21:14:41.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:41.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:41.218 -07 000000480 INF: FPGA: Recv ZSGSRD 29978
17-03-17 21:14:41.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:41.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:41.228 -07 000000458 INF: FPGA: Recv ZSGSRD 29966
17-03-17 21:14:41.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:41.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:41.238 -07 000000569 INF: FPGA: Recv ZPIEZORD 25649
17-03-17 21:14:41.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:41.248 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.429 V. Piezo Error = -9.5 V.
17-03-17 21:14:41.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29971 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29971 (-132.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29965 (-132.0 uncal um), Max = 29978 (-132.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:14:41.248 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29971, posNoise = 7, negNoise = 6
17-03-17 21:14:41.248 -07 000000610 INF: Z Motor: After move to -0.132863, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:41.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:14:41.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:41.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:41.248 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:41.248 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:41.248 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:14:41.248 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:14:41.248 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:14:41.248 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:41.248 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:14:41.248 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:14:41.248 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:41.248 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:14:41.258 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:14:41.258 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:14:41.258 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:14:41.258 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:14:41.268 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:14:41.268 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:14:41.268 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:14:41.268 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:14:41.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 29200 150\n [Camera]
17-03-17 21:14:41.468 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:14:41.858 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:14:41.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:14:41.898 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:14:41.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:14:41.898 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:41.898 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:41.898 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:14:41.898 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:14:41.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:14:41.898 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:41.898 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:41.898 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:14:42.088 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29200 813
17-03-17 21:14:42.238 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 965
17-03-17 21:14:42.278 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:14:42.278 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:14:42.278 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:42.278 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:14:42.278 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:14:42.278 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:42.278 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:42.278 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:42.278 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:14:42.288 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:14:42.448 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:14:42.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:14:42.448 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:42.448 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:42.448 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:14:42.448 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:14:42.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:14:42.448 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:42.448 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:42.448 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:14:42.638 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:14:42.638 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:14:42.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 29200 150' command took 2 ms to send, 1364 ms to get response, and 1371 ms overall
17-03-17 21:14:42.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:14:42.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.132863414111853. ------
17-03-17 21:14:42.638 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:42.638 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13920 mm
17-03-17 21:14:42.638 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:14:42.648 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:42.648 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:14:42.648 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:14:42.648 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30409, sync = True, waitForSettling = False)
17-03-17 21:14:42.648 -07 000000459 INF: Z Motor: Moving to -0.139203 mm, started at -0.132863 mm, distance = -6.34 um
17-03-17 21:14:42.648 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:14:42.648 -07 000000475 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 21:14:42.658 -07 000000459 INF: FPGA: Xmit ZDACW 30409\n [Z Motor]
17-03-17 21:14:42.658 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:14:42.668 -07 000000459 INF: FPGA: 'ZDACW 30409' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:14:42.668 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:42.668 -07 000000576 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:14:42.678 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:14:42.678 -07 000000475 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:42.678 -07 000000475 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:14:42.678 -07 000000475 INF: Y Motor: Moving 1343 steps-19
17-03-17 21:14:42.678 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:42.678 -07 000000626 INF: FPGA: Recv ZDACR 30409
17-03-17 21:14:42.688 -07 000000459 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:14:42.688 -07 000000459 INF: Z Motor: MoveAbsStepped took 33 ms (did NOT wait for settling yet))
17-03-17 21:14:42.688 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:14:42.838 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:14:42.838 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:14:42.838 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:42.838 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 21:14:42.838 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:14:42.838 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:42.848 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:42.848 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:14:42.848 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:14:42.848 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:14:42.848 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 21:14:42.848 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 21:14:43.058 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:14:43.058 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:14:43.098 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:43.098 -07 000000438 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:14:43.108 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:14:43.108 -07 000000475 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:43.108 -07 000000475 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 21:14:43.108 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.163 mm/sec
17-03-17 21:14:44.058 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:44.058 -07 000000438 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:14:44.068 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:44.068 -07 000000475 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:44.088 -07 000000475 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:14:44.088 -07 000000475 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:14:44.088 -07 000000475 INF: Y Motor: Moved to 62.3950 after 1437 ms (table move)
17-03-17 21:14:44.088 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139203 mm (DAC = 30409)
17-03-17 21:14:44.088 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:44.098 -07 000000569 INF: FPGA: Recv ZSGSRD 30959
17-03-17 21:14:44.098 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:14:44.098 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:44.098 -07 000000438 INF: FPGA: Recv ZSGSRD 30963
17-03-17 21:14:44.108 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:44.108 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:44.108 -07 000000429 INF: FPGA: Recv ZSGSRD 30959
17-03-17 21:14:44.118 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:44.118 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:44.118 -07 000000459 INF: FPGA: Recv ZSGSRD 30957
17-03-17 21:14:44.128 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:44.128 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:44.128 -07 000000547 INF: FPGA: Recv ZSGSRD 30954
17-03-17 21:14:44.138 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:44.138 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:44.138 -07 000000438 INF: FPGA: Recv ZSGSRD 30965
17-03-17 21:14:44.148 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:44.148 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:44.148 -07 000000424 INF: FPGA: Recv ZSGSRD 30956
17-03-17 21:14:44.158 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:44.158 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:44.158 -07 000000475 INF: FPGA: Recv ZSGSRD 30961
17-03-17 21:14:44.168 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:44.168 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:44.168 -07 000000458 INF: FPGA: Recv ZSGSRD 30961
17-03-17 21:14:44.178 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:44.178 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:44.178 -07 000000459 INF: FPGA: Recv ZSGSRD 30959
17-03-17 21:14:44.188 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:44.188 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:44.188 -07 000000431 INF: FPGA: Recv ZPIEZORD 27008
17-03-17 21:14:44.198 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:44.198 -07 000000012 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.640 V. Piezo Error = -8.7 V.
17-03-17 21:14:44.198 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30959 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30959 (-138.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30954 (-138.4 uncal um), Max = 30965 (-138.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:14:44.198 -07 000000012 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30959, posNoise = 6, negNoise = 5
17-03-17 21:14:44.198 -07 000000012 INF: Z Motor: After move to -0.139203, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:44.198 -07 000000012 INF: Z Motor: Settle wait time = 1440 ms, measure time = 103 ms (allowed 150 ms), total time = 1543 ms
17-03-17 21:14:44.198 -07 000000012 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:14:44.248 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 21:14:44.248 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:14:44.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:44.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:44.248 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:44.248 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:44.248 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:14:44.248 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:44.248 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:44.248 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:14:44.258 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:14:44.258 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:14:44.258 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:14:44.258 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:14:44.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:14:44.308 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:14:44.508 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:14:44.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:14:44.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:14:44.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 21:14:44.548 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:14:44.548 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 21:14:44.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 21:14:44.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:14:44.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:44.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:14:44.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:14:44.648 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:44.648 -07 000000480 INF: Autofocus start
17-03-17 21:14:44.648 -07 000000480 INF: MeasureProfile start
17-03-17 21:14:44.648 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:44.658 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:14:44.658 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:14:44.658 -07 000000480 INF: MeasureProfile done
17-03-17 21:14:44.658 -07 000000480 INF: X=32  Z correction [um]=0.1299841
17-03-17 21:14:44.658 -07 000000480 INF: Autofocus finished
17-03-17 21:14:44.858 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:14:44.858 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:14:44.858 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.139210535707912. ----------
17-03-17 21:14:44.858 -07 000000610 INF: Cycle	48	Tile	4	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:14:44.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28950, sync = True, waitForSettling = True)
17-03-17 21:14:44.868 -07 000000610 INF: Z Motor: Moving to -0.132525 mm, started at -0.139211 mm, distance = 6.69 um
17-03-17 21:14:44.868 -07 000000610 INF: FPGA: Xmit ZDACW 28950\n [Z Motor]
17-03-17 21:14:44.868 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:14:44.878 -07 000000610 INF: FPGA: 'ZDACW 28950' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:44.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:44.878 -07 000000012 INF: FPGA: Recv ZDACR 28950
17-03-17 21:14:44.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:44.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:14:45.008 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.981281,
17-03-17 21:14:45.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:45.038 -07 000000459 INF: FPGA: Recv ZSGSRD 29918
17-03-17 21:14:45.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:45.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:45.048 -07 000000480 INF: FPGA: Recv ZSGSRD 29923
17-03-17 21:14:45.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:45.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:45.068 -07 000000458 INF: FPGA: Recv ZSGSRD 29913
17-03-17 21:14:45.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:14:45.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:45.078 -07 000000431 INF: FPGA: Recv ZSGSRD 29915
17-03-17 21:14:45.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:45.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:45.098 -07 000000569 INF: FPGA: Recv ZSGSRD 29921
17-03-17 21:14:45.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:14:45.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:45.108 -07 000000547 INF: FPGA: Recv ZSGSRD 29919
17-03-17 21:14:45.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:45.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:45.118 -07 000000012 INF: FPGA: Recv ZSGSRD 29918
17-03-17 21:14:45.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:45.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:45.128 -07 000000608 INF: FPGA: Recv ZSGSRD 29923
17-03-17 21:14:45.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:45.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:45.138 -07 000000459 INF: FPGA: Recv ZSGSRD 29914
17-03-17 21:14:45.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:45.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:45.148 -07 000000415 INF: FPGA: Recv ZSGSRD 29913
17-03-17 21:14:45.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:45.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:45.158 -07 000000382 INF: FPGA: Recv ZPIEZORD 25637
17-03-17 21:14:45.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:45.168 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -9.4 V.
17-03-17 21:14:45.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29918 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29918 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29913 (-131.7 uncal um), Max = 29923 (-131.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:14:45.168 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29918, posNoise = 5, negNoise = 5
17-03-17 21:14:45.168 -07 000000610 INF: Z Motor: After move to -0.132525, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:45.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 300 ms)
17-03-17 21:14:45.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:45.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:45.168 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:14:45.168 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:45.168 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:45.168 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:45.168 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:14:45.168 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:14:45.168 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:45.168 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:14:45.168 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:14:45.168 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:14:45.178 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:14:45.178 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:14:45.178 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:14:45.178 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:14:45.188 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 21:14:45.188 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 21:14:45.188 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 21:14:45.188 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 21:14:45.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 29127 150\n [Camera]
17-03-17 21:14:45.388 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:14:45.818 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:14:45.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:14:45.818 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:45.818 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:45.818 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2187315360, 0x0, 391868352) start.
17-03-17 21:14:45.818 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:14:45.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:14:45.818 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:45.818 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:45.818 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2222737624, 0x0, 418435064) start.
17-03-17 21:14:46.008 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29127 813
17-03-17 21:14:46.158 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:14:46.208 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2187315360, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 21:14:46.208 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:14:46.208 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:46.208 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2222737624, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 21:14:46.208 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:14:46.208 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:46.208 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:46.208 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:14:46.208 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:14:46.218 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:14:46.368 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:14:46.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:14:46.368 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:46.368 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:46.368 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:14:46.368 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:14:46.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:14:46.368 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:46.368 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:46.368 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:14:46.558 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:14:46.558 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:14:46.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 29127 150' command took 2 ms to send, 1364 ms to get response, and 1368 ms overall
17-03-17 21:14:46.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:14:46.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.132522930868339. ------
17-03-17 21:14:46.558 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:46.558 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13919 mm
17-03-17 21:14:46.558 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:14:46.568 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:46.568 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:14:46.568 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30406, sync = True, waitForSettling = False)
17-03-17 21:14:46.568 -07 000000626 INF: Z Motor: Moving to -0.139190 mm, started at -0.132523 mm, distance = -6.67 um
17-03-17 21:14:46.568 -07 000000626 INF: FPGA: Xmit ZDACW 30406\n [Z Motor]
17-03-17 21:14:46.568 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:14:46.568 -07 000000429 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 21:14:46.568 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:14:46.578 -07 000000626 INF: FPGA: 'ZDACW 30406' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:14:46.578 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:46.578 -07 000000608 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:14:46.588 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:14:46.588 -07 000000429 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:46.588 -07 000000429 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:14:46.588 -07 000000429 INF: Y Motor: Moving 1340 steps-16
17-03-17 21:14:46.588 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:14:46.598 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:46.598 -07 000000431 INF: FPGA: Recv ZDACR 30406
17-03-17 21:14:46.608 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:14:46.608 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:14:46.608 -07 000000626 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 21:14:46.768 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 21:14:46.768 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:14:46.768 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:46.768 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 21:14:46.768 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:14:46.768 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:46.778 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:46.778 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:14:46.778 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 21:14:46.778 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 21:14:46.788 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:14:46.788 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 220 ms overall
17-03-17 21:14:46.858 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:14:46.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:14:46.988 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 21:14:46.988 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 21:14:47.018 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:47.028 -07 000000547 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:14:47.028 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:14:47.028 -07 000000429 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:47.028 -07 000000429 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:14:47.028 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.094 mm/sec
17-03-17 21:14:47.978 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:47.978 -07 000000547 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:14:47.988 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:47.988 -07 000000429 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:48.008 -07 000000429 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:14:48.008 -07 000000429 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:14:48.008 -07 000000429 INF: Y Motor: Moved to 63.2236 after 1440 ms (table move)
17-03-17 21:14:48.008 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139190 mm (DAC = 30406)
17-03-17 21:14:48.008 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:48.018 -07 000000480 INF: FPGA: Recv ZSGSRD 30960
17-03-17 21:14:48.018 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:14:48.018 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:48.018 -07 000000382 INF: FPGA: Recv ZSGSRD 30960
17-03-17 21:14:48.028 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:48.028 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:48.028 -07 000000012 INF: FPGA: Recv ZSGSRD 30954
17-03-17 21:14:48.038 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:48.038 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:48.038 -07 000000475 INF: FPGA: Recv ZSGSRD 30955
17-03-17 21:14:48.048 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:48.048 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:48.048 -07 000000438 INF: FPGA: Recv ZSGSRD 30951
17-03-17 21:14:48.058 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:48.058 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:48.058 -07 000000382 INF: FPGA: Recv ZSGSRD 30957
17-03-17 21:14:48.068 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:48.068 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:48.068 -07 000000512 INF: FPGA: Recv ZSGSRD 30958
17-03-17 21:14:48.078 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:48.078 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:48.078 -07 000000458 INF: FPGA: Recv ZSGSRD 30966
17-03-17 21:14:48.088 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:48.088 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:48.088 -07 000000459 INF: FPGA: Recv ZSGSRD 30962
17-03-17 21:14:48.098 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:48.098 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:48.098 -07 000000569 INF: FPGA: Recv ZSGSRD 30957
17-03-17 21:14:48.108 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:48.108 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:48.108 -07 000000438 INF: FPGA: Recv ZPIEZORD 27011
17-03-17 21:14:48.118 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:48.118 -07 000000576 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.640 V. Piezo Error = -8.7 V.
17-03-17 21:14:48.118 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30958 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30958 (-138.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30951 (-138.4 uncal um), Max = 30966 (-138.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:14:48.118 -07 000000576 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30958, posNoise = 8, negNoise = 7
17-03-17 21:14:48.118 -07 000000576 INF: Z Motor: After move to -0.139190, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:48.118 -07 000000576 INF: Z Motor: Settle wait time = 1444 ms, measure time = 103 ms (allowed 150 ms), total time = 1547 ms
17-03-17 21:14:48.118 -07 000000576 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:14:48.168 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 21:14:48.168 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:14:48.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:48.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:48.168 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:48.168 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:48.168 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:14:48.168 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:48.168 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:48.168 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:14:48.178 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:14:48.178 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:14:48.178 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:14:48.178 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:14:48.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:14:48.228 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:14:48.428 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:14:48.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:14:48.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:14:48.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) start.
17-03-17 21:14:48.468 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:14:48.468 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 21:14:48.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 21:14:48.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:14:48.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:48.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:14:48.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:14:48.668 -07 000000431 INF: Autofocus start
17-03-17 21:14:48.668 -07 000000431 INF: MeasureProfile start
17-03-17 21:14:48.668 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:48.668 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:48.678 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:14:48.678 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:14:48.678 -07 000000431 INF: MeasureProfile done
17-03-17 21:14:48.678 -07 000000431 INF: X=30  Z correction [um]=0.1203633
17-03-17 21:14:48.678 -07 000000431 INF: Autofocus finished
17-03-17 21:14:48.878 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:14:48.878 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:14:48.878 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.139204111495771. ----------
17-03-17 21:14:48.878 -07 000000610 INF: Cycle	48	Tile	5	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:14:48.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28945, sync = True, waitForSettling = True)
17-03-17 21:14:48.888 -07 000000610 INF: Z Motor: Moving to -0.132502 mm, started at -0.139204 mm, distance = 6.70 um
17-03-17 21:14:48.888 -07 000000610 INF: FPGA: Xmit ZDACW 28945\n [Z Motor]
17-03-17 21:14:48.888 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:14:48.898 -07 000000610 INF: FPGA: 'ZDACW 28945' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:48.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:48.898 -07 000000415 INF: FPGA: Recv ZDACR 28945
17-03-17 21:14:48.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:48.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:14:49.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:49.058 -07 000000569 INF: FPGA: Recv ZSGSRD 29917
17-03-17 21:14:49.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:49.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:49.068 -07 000000475 INF: FPGA: Recv ZSGSRD 29917
17-03-17 21:14:49.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:49.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:49.078 -07 000000458 INF: FPGA: Recv ZSGSRD 29911
17-03-17 21:14:49.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:49.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:49.088 -07 000000547 INF: FPGA: Recv ZSGSRD 29915
17-03-17 21:14:49.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:49.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:49.098 -07 000000012 INF: FPGA: Recv ZSGSRD 29920
17-03-17 21:14:49.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:49.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:49.108 -07 000000576 INF: FPGA: Recv ZSGSRD 29916
17-03-17 21:14:49.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:49.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:49.118 -07 000000480 INF: FPGA: Recv ZSGSRD 29919
17-03-17 21:14:49.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:49.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:49.128 -07 000000458 INF: FPGA: Recv ZSGSRD 29912
17-03-17 21:14:49.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:49.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:49.138 -07 000000431 INF: FPGA: Recv ZSGSRD 29906
17-03-17 21:14:49.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:49.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:49.148 -07 000000429 INF: FPGA: Recv ZSGSRD 29914
17-03-17 21:14:49.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:49.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:49.158 -07 000000415 INF: FPGA: Recv ZPIEZORD 25629
17-03-17 21:14:49.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:49.168 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -9.4 V.
17-03-17 21:14:49.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29915 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29916 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29906 (-131.7 uncal um), Max = 29920 (-131.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:14:49.168 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29915, posNoise = 5, negNoise = 9
17-03-17 21:14:49.168 -07 000000610 INF: Z Motor: After move to -0.132502, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:49.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:14:49.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:49.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:49.168 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:49.168 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:14:49.168 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:14:49.168 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:14:49.168 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:49.168 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:14:49.168 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:14:49.168 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:49.168 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:49.168 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:14:49.168 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:14:49.168 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:14:49.168 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:14:49.168 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:14:49.178 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:14:49.178 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:14:49.178 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:14:49.178 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:14:49.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 29122 150\n [Camera]
17-03-17 21:14:49.388 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:14:49.818 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:14:49.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:14:49.818 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:49.818 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:49.818 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2501443856, 0x0, 391868352) start.
17-03-17 21:14:49.818 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:14:49.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:14:49.818 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:49.818 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:49.818 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 21:14:50.008 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29122 813
17-03-17 21:14:50.158 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:14:50.198 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2501443856, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:14:50.198 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:14:50.198 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:50.198 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 21:14:50.198 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:14:50.198 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:50.198 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:50.198 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:14:50.208 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:50.208 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:14:50.358 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:14:50.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:14:50.368 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:50.368 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:50.368 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 21:14:50.368 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:14:50.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:14:50.368 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:50.368 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:50.368 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) start.
17-03-17 21:14:50.418 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.988112,
17-03-17 21:14:50.558 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:14:50.558 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:14:50.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 29122 150' command took 2 ms to send, 1361 ms to get response, and 1368 ms overall
17-03-17 21:14:50.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:14:50.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.132503658231914. ------
17-03-17 21:14:50.558 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:50.558 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13902 mm
17-03-17 21:14:50.558 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:14:50.568 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:14:50.568 -07 000000458 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 21:14:50.568 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30368, sync = True, waitForSettling = False)
17-03-17 21:14:50.568 -07 000000438 INF: Z Motor: Moving to -0.139016 mm, started at -0.132504 mm, distance = -6.51 um
17-03-17 21:14:50.568 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:50.568 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 21:14:50.568 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:50.568 -07 000000459 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:14:50.578 -07 000000438 INF: FPGA: Xmit ZDACW 30368\n [Z Motor]
17-03-17 21:14:50.578 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:50.578 -07 000000458 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:50.578 -07 000000458 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:14:50.578 -07 000000458 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:14:50.578 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:14:50.588 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:14:50.588 -07 000000438 INF: FPGA: 'ZDACW 30368' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:14:50.598 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:14:50.608 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:50.608 -07 000000569 INF: FPGA: Recv ZDACR 30368
17-03-17 21:14:50.618 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:14:50.618 -07 000000438 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 21:14:50.758 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:14:50.758 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:14:50.758 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:14:50.758 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:50.758 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:14:50.758 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:50.758 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:50.768 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:14:50.768 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:14:50.768 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:14:50.788 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:14:50.788 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 21:14:50.968 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 21:14:50.968 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:14:51.008 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:51.018 -07 000000608 INF: FPGA: Recv YRDPOS 131187
17-03-17 21:14:51.018 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:14:51.018 -07 000000458 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:51.018 -07 000000458 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 21:14:51.018 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.108 mm/sec
17-03-17 21:14:51.858 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:14:51.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:14:51.968 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:51.968 -07 000000424 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:14:51.978 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:51.978 -07 000000458 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:51.998 -07 000000458 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:14:51.998 -07 000000458 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:14:51.998 -07 000000458 INF: Y Motor: Moved to 64.0566 after 1432 ms (table move)
17-03-17 21:14:51.998 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139016 mm (DAC = 30368)
17-03-17 21:14:51.998 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:51.998 -07 000000459 INF: FPGA: Recv ZSGSRD 30929
17-03-17 21:14:52.008 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:14:52.008 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:52.008 -07 000000424 INF: FPGA: Recv ZSGSRD 30930
17-03-17 21:14:52.018 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:52.018 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:52.018 -07 000000012 INF: FPGA: Recv ZSGSRD 30933
17-03-17 21:14:52.028 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:52.028 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:52.028 -07 000000415 INF: FPGA: Recv ZSGSRD 30936
17-03-17 21:14:52.038 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:52.038 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:52.038 -07 000000459 INF: FPGA: Recv ZSGSRD 30936
17-03-17 21:14:52.048 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:52.048 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:52.048 -07 000000424 INF: FPGA: Recv ZSGSRD 30929
17-03-17 21:14:52.058 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:52.058 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:52.058 -07 000000576 INF: FPGA: Recv ZSGSRD 30923
17-03-17 21:14:52.068 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:52.068 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:52.068 -07 000000475 INF: FPGA: Recv ZSGSRD 30929
17-03-17 21:14:52.078 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:52.078 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:52.078 -07 000000459 INF: FPGA: Recv ZSGSRD 30926
17-03-17 21:14:52.088 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:52.088 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:52.088 -07 000000480 INF: FPGA: Recv ZSGSRD 30935
17-03-17 21:14:52.098 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:52.098 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:52.098 -07 000000012 INF: FPGA: Recv ZPIEZORD 26996
17-03-17 21:14:52.108 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:52.108 -07 000000429 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.634 V. Piezo Error = -8.7 V.
17-03-17 21:14:52.108 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30931 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30930 (-138.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30923 (-138.2 uncal um), Max = 30936 (-138.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:14:52.108 -07 000000429 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30931, posNoise = 5, negNoise = 8
17-03-17 21:14:52.108 -07 000000429 INF: Z Motor: After move to -0.139016, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:52.108 -07 000000429 INF: Z Motor: Settle wait time = 1434 ms, measure time = 105 ms (allowed 150 ms), total time = 1539 ms
17-03-17 21:14:52.108 -07 000000429 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:14:52.158 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 21:14:52.158 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:14:52.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:52.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:52.158 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:52.158 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:52.158 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:14:52.158 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:52.158 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:52.158 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:14:52.168 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:14:52.168 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:14:52.178 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:14:52.178 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:14:52.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:14:52.228 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 21:14:52.428 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 21:14:52.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 21:14:52.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:14:52.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2536866120, 0x0, 559484976) start.
17-03-17 21:14:52.468 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:14:52.468 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 21:14:52.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:14:52.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2536866120, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:14:52.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:52.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:14:52.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:14:52.568 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:52.568 -07 000000475 INF: Autofocus start
17-03-17 21:14:52.568 -07 000000475 INF: MeasureProfile start
17-03-17 21:14:52.568 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:52.578 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:14:52.578 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:14:52.578 -07 000000475 INF: MeasureProfile done
17-03-17 21:14:52.578 -07 000000475 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:14:52.578 -07 000000475 INF: Autofocus finished
17-03-17 21:14:52.778 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:14:52.778 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:14:52.778 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.139030657767943. ----------
17-03-17 21:14:52.778 -07 000000610 INF: Cycle	48	Tile	6	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:14:52.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28875, sync = True, waitForSettling = True)
17-03-17 21:14:52.788 -07 000000610 INF: Z Motor: Moving to -0.132181 mm, started at -0.139031 mm, distance = 6.85 um
17-03-17 21:14:52.788 -07 000000610 INF: FPGA: Xmit ZDACW 28875\n [Z Motor]
17-03-17 21:14:52.788 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:14:52.798 -07 000000610 INF: FPGA: 'ZDACW 28875' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:52.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:52.798 -07 000000501 INF: FPGA: Recv ZDACR 28875
17-03-17 21:14:52.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:52.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:14:52.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:52.958 -07 000000608 INF: FPGA: Recv ZSGSRD 29860
17-03-17 21:14:52.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:52.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:52.968 -07 000000012 INF: FPGA: Recv ZSGSRD 29866
17-03-17 21:14:52.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:52.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:52.978 -07 000000438 INF: FPGA: Recv ZSGSRD 29866
17-03-17 21:14:52.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:52.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:52.988 -07 000000459 INF: FPGA: Recv ZSGSRD 29865
17-03-17 21:14:52.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:52.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:52.998 -07 000000431 INF: FPGA: Recv ZSGSRD 29861
17-03-17 21:14:53.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:53.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:53.008 -07 000000424 INF: FPGA: Recv ZSGSRD 29871
17-03-17 21:14:53.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:53.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:53.018 -07 000000480 INF: FPGA: Recv ZSGSRD 29869
17-03-17 21:14:53.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:53.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:53.028 -07 000000569 INF: FPGA: Recv ZSGSRD 29862
17-03-17 21:14:53.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:53.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:53.038 -07 000000415 INF: FPGA: Recv ZSGSRD 29868
17-03-17 21:14:53.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:53.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:53.048 -07 000000512 INF: FPGA: Recv ZSGSRD 29867
17-03-17 21:14:53.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:53.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:53.058 -07 000000547 INF: FPGA: Recv ZPIEZORD 25601
17-03-17 21:14:53.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:53.068 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.406 V. Piezo Error = -9.4 V.
17-03-17 21:14:53.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29866 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29866 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29860 (-131.4 uncal um), Max = 29871 (-131.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:14:53.068 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29866, posNoise = 5, negNoise = 6
17-03-17 21:14:53.068 -07 000000610 INF: Z Motor: After move to -0.132181, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:53.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:14:53.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:53.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:53.068 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:53.068 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:53.068 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:14:53.068 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:53.068 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:14:53.068 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:14:53.068 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:14:53.068 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:14:53.068 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:14:53.068 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:14:53.078 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:14:53.078 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:14:53.078 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:14:53.078 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:14:53.088 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:14:53.088 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:14:53.088 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:14:53.088 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:14:53.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 29052 150\n [Camera]
17-03-17 21:14:53.288 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:14:53.718 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:14:53.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:14:53.718 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:53.718 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:53.718 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 21:14:53.718 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:14:53.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:14:53.718 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:53.718 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:53.718 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 21:14:53.908 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29052 813
17-03-17 21:14:54.058 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:14:54.088 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:14:54.088 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:14:54.088 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:54.088 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:14:54.088 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:14:54.088 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:54.098 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:54.098 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:54.098 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:14:54.098 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:14:54.258 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:14:54.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:14:54.268 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:54.398 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:14:54.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:14:54.398 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:54.398 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 21:14:54.398 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:54.408 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:54.408 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 21:14:54.458 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:14:54.458 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:14:54.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 29052 150' command took 2 ms to send, 1361 ms to get response, and 1369 ms overall
17-03-17 21:14:54.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:14:54.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.132188871836968. ------
17-03-17 21:14:54.458 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:54.458 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13882 mm
17-03-17 21:14:54.458 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:14:54.458 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:14:54.458 -07 000000012 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 21:14:54.458 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30325, sync = True, waitForSettling = False)
17-03-17 21:14:54.458 -07 000000608 INF: Z Motor: Moving to -0.138819 mm, started at -0.132189 mm, distance = -6.63 um
17-03-17 21:14:54.458 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:54.468 -07 000000608 INF: FPGA: Xmit ZDACW 30325\n [Z Motor]
17-03-17 21:14:54.468 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:14:54.468 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:14:54.478 -07 000000608 INF: FPGA: 'ZDACW 30325' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:54.478 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:54.478 -07 000000438 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:14:54.488 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 21:14:54.488 -07 000000012 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:54.488 -07 000000012 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:14:54.488 -07 000000012 INF: Y Motor: Moving 1338 steps-13
17-03-17 21:14:54.488 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:14:54.498 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:54.498 -07 000000512 INF: FPGA: Recv ZDACR 30325
17-03-17 21:14:54.508 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:14:54.508 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:14:54.508 -07 000000608 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 21:14:54.688 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:14:54.688 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 21:14:54.798 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 21:14:54.798 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:14:54.798 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:54.808 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 21:14:54.808 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:14:54.808 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:54.808 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:54.808 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:54.808 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 544 ms.
17-03-17 21:14:54.808 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 21:14:54.878 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:14:54.878 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:14:54.918 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:54.918 -07 000000475 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:14:54.928 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:14:54.928 -07 000000012 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:54.928 -07 000000012 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:14:54.928 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.836 mm, average velocity = 2.106 mm/sec
17-03-17 21:14:55.788 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.004458,
17-03-17 21:14:55.878 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:55.878 -07 000000424 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:14:55.888 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:55.888 -07 000000012 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:55.908 -07 000000012 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:14:55.908 -07 000000012 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:14:55.908 -07 000000012 INF: Y Motor: Moved to 64.8784 after 1444 ms (table move)
17-03-17 21:14:55.908 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138819 mm (DAC = 30325)
17-03-17 21:14:55.908 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:55.918 -07 000000382 INF: FPGA: Recv ZSGSRD 30907
17-03-17 21:14:55.918 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:14:55.918 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:55.918 -07 000000424 INF: FPGA: Recv ZSGSRD 30895
17-03-17 21:14:55.928 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:55.928 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:55.928 -07 000000458 INF: FPGA: Recv ZSGSRD 30893
17-03-17 21:14:55.938 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:55.938 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:55.938 -07 000000415 INF: FPGA: Recv ZSGSRD 30903
17-03-17 21:14:55.948 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:55.948 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:55.948 -07 000000438 INF: FPGA: Recv ZSGSRD 30902
17-03-17 21:14:55.958 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:55.958 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:55.958 -07 000000424 INF: FPGA: Recv ZSGSRD 30904
17-03-17 21:14:55.968 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:55.968 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:55.968 -07 000000458 INF: FPGA: Recv ZSGSRD 30900
17-03-17 21:14:55.978 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:55.978 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:55.978 -07 000000415 INF: FPGA: Recv ZSGSRD 30894
17-03-17 21:14:55.988 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:55.988 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:55.988 -07 000000547 INF: FPGA: Recv ZSGSRD 30893
17-03-17 21:14:55.998 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:55.998 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:55.998 -07 000000512 INF: FPGA: Recv ZSGSRD 30899
17-03-17 21:14:56.008 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:56.008 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:56.008 -07 000000012 INF: FPGA: Recv ZPIEZORD 26929
17-03-17 21:14:56.018 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:56.018 -07 000000429 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.627 V. Piezo Error = -8.7 V.
17-03-17 21:14:56.018 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30899 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30900 (-138.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30893 (-138.0 uncal um), Max = 30907 (-138.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:14:56.018 -07 000000429 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30899, posNoise = 8, negNoise = 6
17-03-17 21:14:56.018 -07 000000429 INF: Z Motor: After move to -0.138819, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:56.018 -07 000000429 INF: Z Motor: Settle wait time = 1447 ms, measure time = 104 ms (allowed 150 ms), total time = 1551 ms
17-03-17 21:14:56.018 -07 000000429 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:14:56.068 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 21:14:56.068 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:14:56.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:56.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:56.068 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:56.068 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:56.068 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:14:56.068 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:56.068 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:14:56.068 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:14:56.078 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:14:56.078 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:14:56.088 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:14:56.088 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:14:56.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:14:56.148 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:14:56.348 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:14:56.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:14:56.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:14:56.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 21:14:56.388 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:14:56.388 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 21:14:56.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 298 ms overall
17-03-17 21:14:56.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 21:14:56.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:56.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:14:56.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 21:14:56.488 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:56.488 -07 000000501 INF: Autofocus start
17-03-17 21:14:56.488 -07 000000501 INF: MeasureProfile start
17-03-17 21:14:56.488 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:56.498 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:14:56.498 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:14:56.498 -07 000000501 INF: MeasureProfile done
17-03-17 21:14:56.498 -07 000000501 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 21:14:56.498 -07 000000501 INF: Autofocus finished
17-03-17 21:14:56.698 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:14:56.698 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:14:56.698 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.138825082979407. ----------
17-03-17 21:14:56.698 -07 000000610 INF: Cycle	48	Tile	7	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:14:56.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28820, sync = True, waitForSettling = True)
17-03-17 21:14:56.708 -07 000000610 INF: Z Motor: Moving to -0.131930 mm, started at -0.138825 mm, distance = 6.90 um
17-03-17 21:14:56.708 -07 000000610 INF: FPGA: Xmit ZDACW 28820\n [Z Motor]
17-03-17 21:14:56.708 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:14:56.718 -07 000000610 INF: FPGA: 'ZDACW 28820' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:14:56.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:56.718 -07 000000608 INF: FPGA: Recv ZDACR 28820
17-03-17 21:14:56.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:56.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:14:56.858 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:14:56.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:14:56.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:56.878 -07 000000012 INF: FPGA: Recv ZSGSRD 29826
17-03-17 21:14:56.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:56.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:56.888 -07 000000382 INF: FPGA: Recv ZSGSRD 29832
17-03-17 21:14:56.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:56.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:56.898 -07 000000569 INF: FPGA: Recv ZSGSRD 29824
17-03-17 21:14:56.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:56.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:56.908 -07 000000626 INF: FPGA: Recv ZSGSRD 29823
17-03-17 21:14:56.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:56.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:56.918 -07 000000547 INF: FPGA: Recv ZSGSRD 29818
17-03-17 21:14:56.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:56.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:56.928 -07 000000012 INF: FPGA: Recv ZSGSRD 29830
17-03-17 21:14:56.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:56.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:56.938 -07 000000429 INF: FPGA: Recv ZSGSRD 29826
17-03-17 21:14:56.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:56.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:56.948 -07 000000458 INF: FPGA: Recv ZSGSRD 29821
17-03-17 21:14:56.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:56.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:56.958 -07 000000576 INF: FPGA: Recv ZSGSRD 29827
17-03-17 21:14:56.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:56.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:56.968 -07 000000424 INF: FPGA: Recv ZSGSRD 29827
17-03-17 21:14:56.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:56.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:56.978 -07 000000012 INF: FPGA: Recv ZPIEZORD 25547
17-03-17 21:14:56.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:56.988 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -9.4 V.
17-03-17 21:14:56.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29825 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29826 (-131.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29818 (-131.1 uncal um), Max = 29832 (-131.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:14:56.988 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29825, posNoise = 7, negNoise = 7
17-03-17 21:14:56.988 -07 000000610 INF: Z Motor: After move to -0.131930, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:56.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:14:56.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:56.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:56.988 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:56.988 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:14:56.988 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:56.988 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:14:56.988 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:14:56.988 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:56.988 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:14:56.988 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:14:56.988 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:14:56.988 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:14:56.998 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:14:56.998 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 21:14:56.998 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:14:56.998 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:14:57.008 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:14:57.008 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 21:14:57.008 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:14:57.018 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 21:14:57.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28996 150\n [Camera]
17-03-17 21:14:57.218 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:14:57.648 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:14:57.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:14:57.648 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:57.648 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:14:57.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:14:57.648 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:57.658 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:57.658 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-17 21:14:57.658 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:57.658 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) start.
17-03-17 21:14:57.838 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28996 813
17-03-17 21:14:57.988 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:14:58.038 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:14:58.038 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:14:58.038 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:58.038 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:14:58.038 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:14:58.038 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:58.038 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:58.038 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:58.038 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:14:58.048 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:14:58.188 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:14:58.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:14:58.198 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:14:58.318 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:14:58.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:14:58.318 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:14:58.318 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:14:58.318 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:14:58.328 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:14:58.328 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:14:58.388 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:14:58.388 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:14:58.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28996 150' command took 2 ms to send, 1361 ms to get response, and 1369 ms overall
17-03-17 21:14:58.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:14:58.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.131925479139156. ------
17-03-17 21:14:58.388 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:14:58.388 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13851 mm
17-03-17 21:14:58.388 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:14:58.388 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:14:58.388 -07 000000012 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 21:14:58.388 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30259, sync = True, waitForSettling = False)
17-03-17 21:14:58.388 -07 000000424 INF: Z Motor: Moving to -0.138517 mm, started at -0.131925 mm, distance = -6.59 um
17-03-17 21:14:58.388 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:14:58.398 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:14:58.398 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:58.398 -07 000000576 INF: FPGA: Recv YRDPOS 132872
17-03-17 21:14:58.408 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:58.408 -07 000000012 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:58.408 -07 000000424 INF: FPGA: Xmit ZDACW 30259\n [Z Motor]
17-03-17 21:14:58.408 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:14:58.408 -07 000000012 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:14:58.408 -07 000000012 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:14:58.418 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:14:58.418 -07 000000424 INF: FPGA: 'ZDACW 30259' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 21:14:58.428 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:14:58.438 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:14:58.438 -07 000000547 INF: FPGA: Recv ZDACR 30259
17-03-17 21:14:58.448 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:14:58.448 -07 000000424 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 21:14:58.618 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:14:58.618 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:14:58.708 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:14:58.708 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:14:58.708 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:58.708 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 21:14:58.708 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:14:58.708 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:14:58.708 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:14:58.708 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 21:14:58.708 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:14:58.718 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:14:58.798 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:14:58.808 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 391 ms overall
17-03-17 21:14:58.838 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:58.848 -07 000000569 INF: FPGA: Recv YRDPOS 134581
17-03-17 21:14:58.848 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:14:58.848 -07 000000012 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:58.848 -07 000000012 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:14:58.848 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.154 mm/sec
17-03-17 21:14:59.798 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:14:59.798 -07 000000547 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:14:59.808 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:14:59.808 -07 000000012 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:14:59.828 -07 000000012 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:14:59.828 -07 000000012 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:14:59.828 -07 000000012 INF: Y Motor: Moved to 65.7139 after 1438 ms (table move)
17-03-17 21:14:59.838 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138517 mm (DAC = 30259)
17-03-17 21:14:59.838 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:59.838 -07 000000431 INF: FPGA: Recv ZSGSRD 30863
17-03-17 21:14:59.848 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:59.848 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:59.848 -07 000000424 INF: FPGA: Recv ZSGSRD 30858
17-03-17 21:14:59.858 -07 000000382 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:59.858 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:59.858 -07 000000415 INF: FPGA: Recv ZSGSRD 30847
17-03-17 21:14:59.868 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:59.868 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:59.868 -07 000000458 INF: FPGA: Recv ZSGSRD 30841
17-03-17 21:14:59.878 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:59.878 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:59.878 -07 000000475 INF: FPGA: Recv ZSGSRD 30849
17-03-17 21:14:59.888 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:59.888 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:59.888 -07 000000480 INF: FPGA: Recv ZSGSRD 30850
17-03-17 21:14:59.898 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:59.898 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:59.898 -07 000000415 INF: FPGA: Recv ZSGSRD 30852
17-03-17 21:14:59.908 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:59.908 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:59.908 -07 000000459 INF: FPGA: Recv ZSGSRD 30854
17-03-17 21:14:59.918 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:59.918 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:59.918 -07 000000569 INF: FPGA: Recv ZSGSRD 30852
17-03-17 21:14:59.928 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:59.928 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:14:59.928 -07 000000480 INF: FPGA: Recv ZSGSRD 30853
17-03-17 21:14:59.938 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:59.938 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:14:59.938 -07 000000608 INF: FPGA: Recv ZPIEZORD 26884
17-03-17 21:14:59.948 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:14:59.948 -07 000000382 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.617 V. Piezo Error = -8.7 V.
17-03-17 21:14:59.948 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30852 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30852 (-137.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 30841 (-137.7 uncal um), Max = 30863 (-137.8 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 21:14:59.948 -07 000000382 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30852, posNoise = 11, negNoise = 11
17-03-17 21:14:59.948 -07 000000382 INF: Z Motor: After move to -0.138517, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:14:59.948 -07 000000382 INF: Z Motor: Settle wait time = 1441 ms, measure time = 110 ms (allowed 150 ms), total time = 1551 ms
17-03-17 21:14:59.948 -07 000000382 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 21:14:59.988 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 21:14:59.988 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:14:59.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:14:59.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:14:59.988 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:14:59.988 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:14:59.988 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:14:59.988 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:14:59.988 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:14:59.988 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:14:59.998 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:14:59.998 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:15:00.008 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:15:00.008 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:15:00.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:15:00.058 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:15:00.248 -07 000000458 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:15:00.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:15:00.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:15:00.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 21:15:00.288 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:15:00.298 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 21:15:00.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:15:00.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:15:00.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:00.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:15:00.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:15:00.398 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:00.398 -07 000000608 INF: Autofocus start
17-03-17 21:15:00.398 -07 000000608 INF: MeasureProfile start
17-03-17 21:15:00.398 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:00.408 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:15:00.408 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:15:00.408 -07 000000608 INF: MeasureProfile done
17-03-17 21:15:00.408 -07 000000608 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:15:00.408 -07 000000608 INF: Autofocus finished
17-03-17 21:15:00.608 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:15:00.608 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:15:00.608 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.138523145008744. ----------
17-03-17 21:15:00.608 -07 000000610 INF: Cycle	48	Tile	8	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:15:00.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28766, sync = True, waitForSettling = True)
17-03-17 21:15:00.618 -07 000000610 INF: Z Motor: Moving to -0.131682 mm, started at -0.138523 mm, distance = 6.84 um
17-03-17 21:15:00.618 -07 000000610 INF: FPGA: Xmit ZDACW 28766\n [Z Motor]
17-03-17 21:15:00.618 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:15:00.628 -07 000000610 INF: FPGA: 'ZDACW 28766' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:15:00.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:00.628 -07 000000415 INF: FPGA: Recv ZDACR 28766
17-03-17 21:15:00.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:00.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:15:00.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:00.788 -07 000000438 INF: FPGA: Recv ZSGSRD 29779
17-03-17 21:15:00.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:00.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:00.798 -07 000000429 INF: FPGA: Recv ZSGSRD 29795
17-03-17 21:15:00.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:00.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:00.808 -07 000000458 INF: FPGA: Recv ZSGSRD 29792
17-03-17 21:15:00.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:00.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:00.818 -07 000000480 INF: FPGA: Recv ZSGSRD 29774
17-03-17 21:15:00.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:00.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:00.838 -07 000000576 INF: FPGA: Recv ZSGSRD 29789
17-03-17 21:15:00.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:15:00.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:00.848 -07 000000608 INF: FPGA: Recv ZSGSRD 29785
17-03-17 21:15:00.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:00.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:00.858 -07 000000626 INF: FPGA: Recv ZSGSRD 29787
17-03-17 21:15:00.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:00.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:00.868 -07 000000475 INF: FPGA: Recv ZSGSRD 29785
17-03-17 21:15:00.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:00.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:00.878 -07 000000501 INF: FPGA: Recv ZSGSRD 29791
17-03-17 21:15:00.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:00.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:00.888 -07 000000480 INF: FPGA: Recv ZSGSRD 29785
17-03-17 21:15:00.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:00.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:00.898 -07 000000608 INF: FPGA: Recv ZPIEZORD 25481
17-03-17 21:15:00.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:00.908 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.389 V. Piezo Error = -9.5 V.
17-03-17 21:15:00.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29786 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29786 (-130.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 29774 (-130.8 uncal um), Max = 29795 (-130.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 21:15:00.908 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29786, posNoise = 9, negNoise = 12
17-03-17 21:15:00.908 -07 000000610 INF: Z Motor: After move to -0.131682, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:00.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 21:15:00.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:00.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:00.908 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:00.908 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:00.908 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:15:00.908 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:00.908 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:15:00.908 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:15:00.908 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:15:00.908 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:15:00.908 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:15:00.908 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:15:00.918 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:15:00.918 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:15:00.918 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:15:00.918 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:15:00.918 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:15:00.928 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:15:00.928 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:15:00.928 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:15:00.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28943 150\n [Camera]
17-03-17 21:15:01.128 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:15:01.148 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.028963,
17-03-17 21:15:01.558 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:15:01.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:15:01.558 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:01.558 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:01.558 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 21:15:01.558 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:15:01.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:15:01.558 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:01.558 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:01.558 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 21:15:01.748 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28943 813
17-03-17 21:15:01.858 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:15:01.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:15:01.898 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:15:01.938 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:15:01.938 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:15:01.938 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:01.938 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:15:01.938 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:15:01.938 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:01.938 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:01.938 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:15:01.938 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:01.948 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:15:02.098 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:15:02.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:15:02.108 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:02.108 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:15:02.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:15:02.108 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:02.108 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:02.118 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:15:02.118 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:02.118 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:15:02.298 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:15:02.298 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:15:02.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28943 150' command took 2 ms to send, 1361 ms to get response, and 1368 ms overall
17-03-17 21:15:02.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:15:02.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.131674934865627. ------
17-03-17 21:15:02.298 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:02.298 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13805 mm
17-03-17 21:15:02.298 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:15:02.308 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:02.308 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:15:02.308 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:15:02.308 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:15:02.308 -07 000000459 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 21:15:02.308 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 30158, sync = True, waitForSettling = False)
17-03-17 21:15:02.308 -07 000000012 INF: Z Motor: Moving to -0.138054 mm, started at -0.131675 mm, distance = -6.38 um
17-03-17 21:15:02.318 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:02.318 -07 000000424 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:15:02.328 -07 000000012 INF: FPGA: Xmit ZDACW 30158\n [Z Motor]
17-03-17 21:15:02.328 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:15:02.328 -07 000000459 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:02.328 -07 000000459 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:15:02.328 -07 000000459 INF: Y Motor: Moving 1342 steps-19
17-03-17 21:15:02.328 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:15:02.338 -07 000000012 INF: FPGA: 'ZDACW 30158' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:15:02.338 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:02.338 -07 000000475 INF: FPGA: Recv ZDACR 30158
17-03-17 21:15:02.348 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:15:02.348 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:02.348 -07 000000012 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 21:15:02.498 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:15:02.498 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:15:02.498 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:02.498 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:15:02.498 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:15:02.498 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:02.498 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:15:02.498 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:15:02.498 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:15:02.508 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:15:02.508 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:15:02.508 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:15:02.718 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:15:02.718 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:15:02.758 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:02.758 -07 000000424 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:15:02.768 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:15:02.768 -07 000000459 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:02.768 -07 000000459 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:15:02.768 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.107 mm/sec
17-03-17 21:15:03.718 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:03.718 -07 000000576 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:15:03.728 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:03.728 -07 000000459 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:03.748 -07 000000459 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:15:03.748 -07 000000459 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:15:03.748 -07 000000459 INF: Y Motor: Moved to 66.5386 after 1441 ms (table move)
17-03-17 21:15:03.748 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138054 mm (DAC = 30158)
17-03-17 21:15:03.748 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:03.758 -07 000000415 INF: FPGA: Recv ZSGSRD 30783
17-03-17 21:15:03.758 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:15:03.758 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:03.758 -07 000000626 INF: FPGA: Recv ZSGSRD 30780
17-03-17 21:15:03.768 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:15:03.768 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:03.768 -07 000000475 INF: FPGA: Recv ZSGSRD 30780
17-03-17 21:15:03.778 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:03.778 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:03.778 -07 000000569 INF: FPGA: Recv ZSGSRD 30781
17-03-17 21:15:03.788 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:03.788 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:03.788 -07 000000424 INF: FPGA: Recv ZSGSRD 30787
17-03-17 21:15:03.798 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:03.798 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:03.798 -07 000000012 INF: FPGA: Recv ZSGSRD 30784
17-03-17 21:15:03.808 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:03.808 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:03.808 -07 000000382 INF: FPGA: Recv ZSGSRD 30780
17-03-17 21:15:03.818 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:03.818 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:03.818 -07 000000415 INF: FPGA: Recv ZSGSRD 30771
17-03-17 21:15:03.828 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:03.828 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:03.828 -07 000000431 INF: FPGA: Recv ZSGSRD 30776
17-03-17 21:15:03.838 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:03.838 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:03.838 -07 000000626 INF: FPGA: Recv ZSGSRD 30777
17-03-17 21:15:03.848 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:03.848 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:03.848 -07 000000475 INF: FPGA: Recv ZPIEZORD 26794
17-03-17 21:15:03.858 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:03.858 -07 000000480 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.602 V. Piezo Error = -8.8 V.
17-03-17 21:15:03.858 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30780 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30780 (-137.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30771 (-137.2 uncal um), Max = 30787 (-137.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:15:03.858 -07 000000480 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30780, posNoise = 7, negNoise = 9
17-03-17 21:15:03.858 -07 000000480 INF: Z Motor: After move to -0.138054, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:03.858 -07 000000480 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:15:03.858 -07 000000480 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:15:03.908 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 21:15:03.908 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:15:03.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:03.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:03.908 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:03.908 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:03.908 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:15:03.908 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:03.908 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:15:03.908 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:15:03.918 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:15:03.918 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:15:03.928 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:15:03.928 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:15:03.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:15:03.978 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:15:04.168 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:15:04.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:15:04.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:15:04.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) start.
17-03-17 21:15:04.208 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:15:04.208 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:15:04.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:15:04.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:15:04.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:04.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:15:04.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:15:04.318 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:04.318 -07 000000569 INF: Autofocus start
17-03-17 21:15:04.318 -07 000000569 INF: MeasureProfile start
17-03-17 21:15:04.318 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:04.328 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:15:04.328 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:15:04.328 -07 000000569 INF: MeasureProfile done
17-03-17 21:15:04.328 -07 000000569 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:15:04.328 -07 000000569 INF: Autofocus finished
17-03-17 21:15:04.528 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:15:04.528 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 21:15:04.538 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.138060601734537. ----------
17-03-17 21:15:04.538 -07 000000610 INF: Cycle	48	Tile	9	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:15:04.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28665, sync = True, waitForSettling = True)
17-03-17 21:15:04.538 -07 000000610 INF: Z Motor: Moving to -0.131220 mm, started at -0.138061 mm, distance = 6.84 um
17-03-17 21:15:04.538 -07 000000610 INF: FPGA: Xmit ZDACW 28665\n [Z Motor]
17-03-17 21:15:04.548 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:15:04.548 -07 000000610 INF: FPGA: 'ZDACW 28665' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:15:04.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:04.548 -07 000000424 INF: FPGA: Recv ZDACR 28665
17-03-17 21:15:04.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:04.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:15:04.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:04.708 -07 000000382 INF: FPGA: Recv ZSGSRD 29718
17-03-17 21:15:04.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:04.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:04.718 -07 000000626 INF: FPGA: Recv ZSGSRD 29713
17-03-17 21:15:04.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:04.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:04.728 -07 000000459 INF: FPGA: Recv ZSGSRD 29721
17-03-17 21:15:04.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:04.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:04.738 -07 000000480 INF: FPGA: Recv ZSGSRD 29715
17-03-17 21:15:04.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:04.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:04.748 -07 000000438 INF: FPGA: Recv ZSGSRD 29715
17-03-17 21:15:04.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:04.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:04.758 -07 000000501 INF: FPGA: Recv ZSGSRD 29713
17-03-17 21:15:04.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:04.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:04.768 -07 000000569 INF: FPGA: Recv ZSGSRD 29717
17-03-17 21:15:04.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:04.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:04.778 -07 000000512 INF: FPGA: Recv ZSGSRD 29717
17-03-17 21:15:04.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:04.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:04.788 -07 000000382 INF: FPGA: Recv ZSGSRD 29709
17-03-17 21:15:04.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:04.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:04.798 -07 000000458 INF: FPGA: Recv ZSGSRD 29718
17-03-17 21:15:04.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:04.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:04.808 -07 000000608 INF: FPGA: Recv ZPIEZORD 25420
17-03-17 21:15:04.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:04.818 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.374 V. Piezo Error = -9.4 V.
17-03-17 21:15:04.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29716 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29716 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29709 (-130.4 uncal um), Max = 29721 (-130.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:15:04.818 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29716, posNoise = 5, negNoise = 7
17-03-17 21:15:04.818 -07 000000610 INF: Z Motor: After move to -0.131220, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:04.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:15:04.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:04.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:04.818 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:15:04.818 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:15:04.818 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:04.818 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:04.818 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:15:04.818 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:04.818 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 21:15:04.818 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:15:04.818 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 21:15:04.818 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:15:04.828 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:15:04.828 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:15:04.828 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:15:04.828 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:15:04.838 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:15:04.838 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:15:04.838 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:15:04.838 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:15:04.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28842 150\n [Camera]
17-03-17 21:15:05.038 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:15:05.468 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:15:05.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:15:05.468 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:05.468 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:05.468 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:15:05.468 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:15:05.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:15:05.468 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:05.468 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:05.468 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:15:05.658 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28842 813
17-03-17 21:15:05.808 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:15:05.848 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:15:05.848 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:15:05.848 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:05.848 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:15:05.848 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:15:05.848 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:05.858 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:15:05.858 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:15:05.858 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:15:05.858 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:15:06.018 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:15:06.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:15:06.018 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:06.018 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:06.018 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:15:06.018 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:15:06.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:15:06.018 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:06.018 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:06.018 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:15:06.208 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:15:06.208 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:15:06.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28842 150' command took 2 ms to send, 1364 ms to get response, and 1371 ms overall
17-03-17 21:15:06.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:15:06.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.131225240015704. ------
17-03-17 21:15:06.208 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:06.208 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13796 mm
17-03-17 21:15:06.208 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:15:06.218 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:06.218 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:15:06.218 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30138, sync = True, waitForSettling = False)
17-03-17 21:15:06.218 -07 000000429 INF: Z Motor: Moving to -0.137963 mm, started at -0.131225 mm, distance = -6.74 um
17-03-17 21:15:06.218 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:15:06.218 -07 000000458 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:15:06.218 -07 000000458 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 21:15:06.228 -07 000000429 INF: FPGA: Xmit ZDACW 30138\n [Z Motor]
17-03-17 21:15:06.228 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:15:06.238 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:06.238 -07 000000429 INF: FPGA: 'ZDACW 30138' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:15:06.238 -07 000000512 INF: FPGA: Recv YRDPOS 136272
17-03-17 21:15:06.248 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:15:06.248 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:06.248 -07 000000458 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:06.248 -07 000000415 INF: FPGA: Recv ZDACR 30138
17-03-17 21:15:06.248 -07 000000458 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:15:06.248 -07 000000458 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:15:06.258 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:15:06.258 -07 000000429 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 21:15:06.258 -07 000000458 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:15:06.398 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:15:06.398 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:15:06.398 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:06.398 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:15:06.398 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 21:15:06.398 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:06.408 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:06.408 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:15:06.408 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:15:06.408 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:15:06.418 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:15:06.418 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 21:15:06.518 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.027603,
17-03-17 21:15:06.628 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:15:06.628 -07 000000458 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 21:15:06.668 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:06.668 -07 000000569 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:15:06.678 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:15:06.678 -07 000000458 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:06.678 -07 000000458 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 21:15:06.678 -07 000000458 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.204 mm/sec
17-03-17 21:15:06.858 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:15:06.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:15:07.628 -07 000000458 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:07.628 -07 000000501 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:15:07.638 -07 000000458 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:07.638 -07 000000458 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:07.658 -07 000000458 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:15:07.658 -07 000000458 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:15:07.658 -07 000000458 INF: Y Motor: Moved to 67.3716 after 1439 ms (table move)
17-03-17 21:15:07.658 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137963 mm (DAC = 30138)
17-03-17 21:15:07.658 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:07.658 -07 000000382 INF: FPGA: Recv ZSGSRD 30764
17-03-17 21:15:07.668 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:15:07.668 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:07.668 -07 000000415 INF: FPGA: Recv ZSGSRD 30772
17-03-17 21:15:07.678 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:07.678 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:07.678 -07 000000429 INF: FPGA: Recv ZSGSRD 30767
17-03-17 21:15:07.688 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:07.688 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:07.688 -07 000000608 INF: FPGA: Recv ZSGSRD 30769
17-03-17 21:15:07.698 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:07.698 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:07.698 -07 000000475 INF: FPGA: Recv ZSGSRD 30762
17-03-17 21:15:07.708 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:07.708 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:07.708 -07 000000576 INF: FPGA: Recv ZSGSRD 30765
17-03-17 21:15:07.718 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:07.718 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:07.718 -07 000000569 INF: FPGA: Recv ZSGSRD 30769
17-03-17 21:15:07.728 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:07.728 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:07.728 -07 000000458 INF: FPGA: Recv ZSGSRD 30756
17-03-17 21:15:07.738 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:07.738 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:07.738 -07 000000459 INF: FPGA: Recv ZSGSRD 30769
17-03-17 21:15:07.748 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:07.748 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:07.748 -07 000000608 INF: FPGA: Recv ZSGSRD 30766
17-03-17 21:15:07.758 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:07.758 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:07.758 -07 000000512 INF: FPGA: Recv ZPIEZORD 26818
17-03-17 21:15:07.768 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:07.768 -07 000000424 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.599 V. Piezo Error = -8.7 V.
17-03-17 21:15:07.768 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30766 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30766 (-137.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30756 (-137.1 uncal um), Max = 30772 (-137.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:15:07.768 -07 000000424 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30766, posNoise = 6, negNoise = 10
17-03-17 21:15:07.768 -07 000000424 INF: Z Motor: After move to -0.137963, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:07.768 -07 000000424 INF: Z Motor: Settle wait time = 1443 ms, measure time = 104 ms (allowed 150 ms), total time = 1547 ms
17-03-17 21:15:07.768 -07 000000424 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:15:07.818 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 21:15:07.818 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:15:07.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:07.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:07.818 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:07.818 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:07.818 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:15:07.818 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:07.828 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:15:07.828 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:15:07.828 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:15:07.828 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:15:07.838 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:15:07.838 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:15:07.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:15:07.888 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:15:08.088 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:15:08.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:15:08.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:15:08.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 21:15:08.128 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:15:08.128 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 21:15:08.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 288 ms overall
17-03-17 21:15:08.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:15:08.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:08.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:15:08.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:15:08.228 -07 000000429 INF: Autofocus start
17-03-17 21:15:08.228 -07 000000429 INF: MeasureProfile start
17-03-17 21:15:08.228 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:08.228 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:08.238 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:15:08.238 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:15:08.238 -07 000000429 INF: MeasureProfile done
17-03-17 21:15:08.238 -07 000000429 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:15:08.238 -07 000000429 INF: Autofocus finished
17-03-17 21:15:08.438 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:15:08.438 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:15:08.438 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.137970662764553. ----------
17-03-17 21:15:08.438 -07 000000610 INF: Cycle	48	Tile	10	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:15:08.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28662, sync = True, waitForSettling = True)
17-03-17 21:15:08.448 -07 000000610 INF: Z Motor: Moving to -0.131206 mm, started at -0.137971 mm, distance = 6.76 um
17-03-17 21:15:08.448 -07 000000610 INF: FPGA: Xmit ZDACW 28662\n [Z Motor]
17-03-17 21:15:08.448 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:15:08.458 -07 000000610 INF: FPGA: 'ZDACW 28662' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:15:08.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:08.458 -07 000000608 INF: FPGA: Recv ZDACR 28662
17-03-17 21:15:08.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:08.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:15:08.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:08.618 -07 000000480 INF: FPGA: Recv ZSGSRD 29720
17-03-17 21:15:08.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:08.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:08.628 -07 000000438 INF: FPGA: Recv ZSGSRD 29709
17-03-17 21:15:08.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:08.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:08.638 -07 000000382 INF: FPGA: Recv ZSGSRD 29717
17-03-17 21:15:08.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:08.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:08.648 -07 000000415 INF: FPGA: Recv ZSGSRD 29711
17-03-17 21:15:08.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:08.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:08.658 -07 000000512 INF: FPGA: Recv ZSGSRD 29711
17-03-17 21:15:08.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:08.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:08.668 -07 000000480 INF: FPGA: Recv ZSGSRD 29714
17-03-17 21:15:08.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:08.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:08.678 -07 000000458 INF: FPGA: Recv ZSGSRD 29707
17-03-17 21:15:08.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:08.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:08.688 -07 000000569 INF: FPGA: Recv ZSGSRD 29724
17-03-17 21:15:08.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:08.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:08.698 -07 000000547 INF: FPGA: Recv ZSGSRD 29718
17-03-17 21:15:08.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:08.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:08.708 -07 000000626 INF: FPGA: Recv ZSGSRD 29712
17-03-17 21:15:08.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:08.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:08.718 -07 000000576 INF: FPGA: Recv ZPIEZORD 25444
17-03-17 21:15:08.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:08.728 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.374 V. Piezo Error = -9.4 V.
17-03-17 21:15:08.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29714 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29713 (-130.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29707 (-130.4 uncal um), Max = 29724 (-130.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:15:08.728 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29714, posNoise = 10, negNoise = 7
17-03-17 21:15:08.728 -07 000000610 INF: Z Motor: After move to -0.131206, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:08.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:15:08.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:08.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:08.728 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:08.728 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:15:08.728 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:08.728 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:08.728 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:15:08.728 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:15:08.728 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:15:08.728 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:15:08.728 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:15:08.728 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:15:08.738 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:15:08.738 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:15:08.738 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:15:08.738 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:15:08.748 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:15:08.748 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:15:08.748 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 21:15:08.748 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:15:08.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28839 150\n [Camera]
17-03-17 21:15:08.958 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:15:09.388 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:15:09.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:15:09.388 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:09.388 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:09.388 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2187315360, 0x0, 391868352) start.
17-03-17 21:15:09.388 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:15:09.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:15:09.388 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:09.388 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:09.388 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2222737624, 0x0, 418435064) start.
17-03-17 21:15:09.578 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28839 813
17-03-17 21:15:09.728 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:15:09.768 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2222737624, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 21:15:09.768 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:15:09.768 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:09.778 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:15:09.778 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2187315360, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:15:09.778 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:15:09.778 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:09.778 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:15:09.778 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:15:09.778 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:15:09.938 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1172
17-03-17 21:15:09.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1172
17-03-17 21:15:09.938 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:09.938 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:09.938 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:15:09.938 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1172
17-03-17 21:15:09.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1172
17-03-17 21:15:09.938 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:09.938 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:09.938 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:15:10.118 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:15:10.128 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:15:10.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28839 150' command took 2 ms to send, 1360 ms to get response, and 1369 ms overall
17-03-17 21:15:10.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:15:10.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.13121239159142. ------
17-03-17 21:15:10.128 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:10.128 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13763 mm
17-03-17 21:15:10.128 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:15:10.128 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:15:10.138 -07 000000480 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 21:15:10.138 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:10.138 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:15:10.138 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:10.138 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30065, sync = True, waitForSettling = False)
17-03-17 21:15:10.138 -07 000000501 INF: Z Motor: Moving to -0.137629 mm, started at -0.131212 mm, distance = -6.42 um
17-03-17 21:15:10.138 -07 000000569 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:15:10.148 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:10.148 -07 000000480 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:10.148 -07 000000501 INF: FPGA: Xmit ZDACW 30065\n [Z Motor]
17-03-17 21:15:10.148 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:15:10.148 -07 000000480 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:15:10.148 -07 000000480 INF: Y Motor: Moving 1345 steps-23
17-03-17 21:15:10.158 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:15:10.158 -07 000000501 INF: FPGA: 'ZDACW 30065' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:15:10.168 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:15:10.178 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:10.178 -07 000000012 INF: FPGA: Recv ZDACR 30065
17-03-17 21:15:10.188 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:15:10.188 -07 000000501 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 21:15:10.338 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 21:15:10.338 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:15:10.338 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:10.338 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 21:15:10.338 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:15:10.338 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:10.348 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:15:10.348 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:15:10.348 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 21:15:10.348 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:15:10.358 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:15:10.358 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 21:15:10.548 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 21:15:10.548 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 397 ms overall
17-03-17 21:15:10.578 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:10.588 -07 000000012 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:15:10.598 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:10.598 -07 000000480 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:10.598 -07 000000480 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 21:15:10.598 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-17 21:15:11.548 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:11.548 -07 000000431 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:15:11.558 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:11.558 -07 000000480 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:11.578 -07 000000480 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:15:11.578 -07 000000480 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:15:11.578 -07 000000480 INF: Y Motor: Moved to 68.2046 after 1445 ms (table move)
17-03-17 21:15:11.578 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137629 mm (DAC = 30065)
17-03-17 21:15:11.578 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:11.588 -07 000000569 INF: FPGA: Recv ZSGSRD 30720
17-03-17 21:15:11.588 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:15:11.588 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:11.588 -07 000000012 INF: FPGA: Recv ZSGSRD 30713
17-03-17 21:15:11.598 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:15:11.598 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:11.598 -07 000000424 INF: FPGA: Recv ZSGSRD 30713
17-03-17 21:15:11.608 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:11.608 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:11.608 -07 000000382 INF: FPGA: Recv ZSGSRD 30716
17-03-17 21:15:11.618 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:11.618 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:11.618 -07 000000608 INF: FPGA: Recv ZSGSRD 30708
17-03-17 21:15:11.628 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:11.628 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:11.628 -07 000000012 INF: FPGA: Recv ZSGSRD 30713
17-03-17 21:15:11.638 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:11.638 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:11.638 -07 000000438 INF: FPGA: Recv ZSGSRD 30715
17-03-17 21:15:11.648 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:15:11.648 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:11.648 -07 000000512 INF: FPGA: Recv ZSGSRD 30713
17-03-17 21:15:11.658 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:11.658 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:11.658 -07 000000429 INF: FPGA: Recv ZSGSRD 30712
17-03-17 21:15:11.668 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:11.668 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:11.668 -07 000000431 INF: FPGA: Recv ZSGSRD 30710
17-03-17 21:15:11.678 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:11.678 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:11.678 -07 000000458 INF: FPGA: Recv ZPIEZORD 26767
17-03-17 21:15:11.688 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:11.688 -07 000000475 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.588 V. Piezo Error = -8.7 V.
17-03-17 21:15:11.688 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30713 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30713 (-136.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30708 (-136.8 uncal um), Max = 30720 (-136.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:15:11.688 -07 000000475 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30713, posNoise = 7, negNoise = 5
17-03-17 21:15:11.688 -07 000000475 INF: Z Motor: After move to -0.137629, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:11.688 -07 000000475 INF: Z Motor: Settle wait time = 1446 ms, measure time = 103 ms (allowed 150 ms), total time = 1549 ms
17-03-17 21:15:11.688 -07 000000475 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:15:11.738 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 21:15:11.738 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:15:11.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:11.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:11.738 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:11.738 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:11.738 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:15:11.738 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:11.738 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:15:11.738 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:15:11.748 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:15:11.748 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:15:11.758 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:15:11.758 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:15:11.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:15:11.798 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:15:11.858 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:15:11.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:15:11.888 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.981281,
17-03-17 21:15:11.998 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:15:11.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:15:12.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:15:12.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) start.
17-03-17 21:15:12.048 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:15:12.048 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:15:12.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 288 ms overall
17-03-17 21:15:12.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2486767776, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:15:12.118 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:12.118 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:15:12.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:15:12.148 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:12.148 -07 000000012 INF: Autofocus start
17-03-17 21:15:12.148 -07 000000012 INF: MeasureProfile start
17-03-17 21:15:12.148 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:12.158 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:15:12.158 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:15:12.168 -07 000000012 INF: MeasureProfile done
17-03-17 21:15:12.168 -07 000000012 INF: X=19  Z correction [um]=0.06744906
17-03-17 21:15:12.168 -07 000000012 INF: Autofocus finished
17-03-17 21:15:12.358 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:15:12.358 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:15:12.358 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.137630179521039. ----------
17-03-17 21:15:12.358 -07 000000610 INF: Cycle	48	Tile	11	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:15:12.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28592, sync = True, waitForSettling = True)
17-03-17 21:15:12.368 -07 000000610 INF: Z Motor: Moving to -0.130886 mm, started at -0.137630 mm, distance = 6.74 um
17-03-17 21:15:12.368 -07 000000610 INF: FPGA: Xmit ZDACW 28592\n [Z Motor]
17-03-17 21:15:12.368 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:15:12.378 -07 000000610 INF: FPGA: 'ZDACW 28592' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:15:12.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:12.378 -07 000000512 INF: FPGA: Recv ZDACR 28592
17-03-17 21:15:12.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:12.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:15:12.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:12.538 -07 000000438 INF: FPGA: Recv ZSGSRD 29663
17-03-17 21:15:12.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:12.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:12.548 -07 000000475 INF: FPGA: Recv ZSGSRD 29661
17-03-17 21:15:12.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:12.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:12.558 -07 000000431 INF: FPGA: Recv ZSGSRD 29661
17-03-17 21:15:12.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:12.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:12.568 -07 000000459 INF: FPGA: Recv ZSGSRD 29656
17-03-17 21:15:12.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:12.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:12.578 -07 000000501 INF: FPGA: Recv ZSGSRD 29666
17-03-17 21:15:12.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:12.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:12.588 -07 000000012 INF: FPGA: Recv ZSGSRD 29667
17-03-17 21:15:12.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:12.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:12.598 -07 000000512 INF: FPGA: Recv ZSGSRD 29667
17-03-17 21:15:12.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:12.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:12.608 -07 000000431 INF: FPGA: Recv ZSGSRD 29661
17-03-17 21:15:12.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:12.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:12.618 -07 000000415 INF: FPGA: Recv ZSGSRD 29664
17-03-17 21:15:12.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:12.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:12.628 -07 000000501 INF: FPGA: Recv ZSGSRD 29662
17-03-17 21:15:12.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:12.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:12.638 -07 000000438 INF: FPGA: Recv ZPIEZORD 25425
17-03-17 21:15:12.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:12.648 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -9.3 V.
17-03-17 21:15:12.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29663 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29662 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29656 (-130.1 uncal um), Max = 29667 (-130.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:15:12.648 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29663, posNoise = 4, negNoise = 7
17-03-17 21:15:12.648 -07 000000610 INF: Z Motor: After move to -0.130886, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:12.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:15:12.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:12.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:12.648 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:12.648 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:12.648 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:15:12.648 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:15:12.648 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:12.648 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:15:12.648 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:15:12.648 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:15:12.648 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:15:12.648 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:15:12.658 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:15:12.658 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:15:12.658 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:15:12.658 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:15:12.668 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:15:12.668 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:15:12.668 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:15:12.668 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:15:12.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28769 150\n [Camera]
17-03-17 21:15:12.868 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:15:13.298 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:15:13.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:15:13.298 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:13.298 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:13.298 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2501443856, 0x0, 391868352) start.
17-03-17 21:15:13.308 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:15:13.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:15:13.308 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:13.308 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:13.308 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 21:15:13.488 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28769 813
17-03-17 21:15:13.638 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:15:13.678 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:15:13.678 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:15:13.678 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:13.678 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2501443856, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:15:13.678 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:15:13.688 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:13.688 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:15:13.688 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:15:13.688 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:15:13.698 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:15:13.848 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1172
17-03-17 21:15:13.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1172
17-03-17 21:15:13.848 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:13.848 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:13.848 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 21:15:13.848 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1172
17-03-17 21:15:13.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1172
17-03-17 21:15:13.848 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:13.848 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:13.848 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) start.
17-03-17 21:15:14.038 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:15:14.038 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:15:14.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28769 150' command took 2 ms to send, 1364 ms to get response, and 1369 ms overall
17-03-17 21:15:14.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:15:14.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.13088475677219. ------
17-03-17 21:15:14.038 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13753 mm
17-03-17 21:15:14.038 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:15:14.048 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:14.048 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:14.048 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:15:14.048 -07 000000438 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 21:15:14.048 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30043, sync = True, waitForSettling = False)
17-03-17 21:15:14.048 -07 000000576 INF: Z Motor: Moving to -0.137528 mm, started at -0.130885 mm, distance = -6.64 um
17-03-17 21:15:14.058 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:14.058 -07 000000576 INF: FPGA: Xmit ZDACW 30043\n [Z Motor]
17-03-17 21:15:14.058 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:15:14.068 -07 000000576 INF: FPGA: 'ZDACW 30043' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:15:14.068 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:14.068 -07 000000608 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:15:14.078 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:15:14.078 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:15:14.078 -07 000000438 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:14.078 -07 000000438 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:15:14.078 -07 000000438 INF: Y Motor: Moving 1341 steps-16
17-03-17 21:15:14.088 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:14.088 -07 000000501 INF: FPGA: Recv ZDACR 30043
17-03-17 21:15:14.098 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:15:14.098 -07 000000576 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 21:15:14.098 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:15:14.238 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2637860568, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 21:15:14.238 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:15:14.238 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:14.238 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:15:14.238 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:15:14.238 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:14.238 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:15:14.248 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:15:14.248 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:15:14.248 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:15:14.278 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:15:14.278 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:15:14.468 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 21:15:14.468 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:15:14.508 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:14.508 -07 000000459 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:15:14.518 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:15:14.518 -07 000000438 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:14.518 -07 000000438 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 21:15:14.518 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-17 21:15:15.468 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:15.468 -07 000000512 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:15:15.478 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:15.478 -07 000000438 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:15.498 -07 000000438 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:15:15.498 -07 000000438 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:15:15.498 -07 000000438 INF: Y Motor: Moved to 69.0269 after 1448 ms (table move)
17-03-17 21:15:15.498 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137528 mm (DAC = 30043)
17-03-17 21:15:15.498 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:15.498 -07 000000547 INF: FPGA: Recv ZSGSRD 30696
17-03-17 21:15:15.508 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:15:15.508 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:15.508 -07 000000431 INF: FPGA: Recv ZSGSRD 30705
17-03-17 21:15:15.518 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:15.518 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:15.518 -07 000000475 INF: FPGA: Recv ZSGSRD 30703
17-03-17 21:15:15.528 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:15.528 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:15.528 -07 000000501 INF: FPGA: Recv ZSGSRD 30702
17-03-17 21:15:15.538 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:15.538 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:15.538 -07 000000429 INF: FPGA: Recv ZSGSRD 30694
17-03-17 21:15:15.548 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:15.548 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:15.548 -07 000000012 INF: FPGA: Recv ZSGSRD 30702
17-03-17 21:15:15.558 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:15.558 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:15.558 -07 000000438 INF: FPGA: Recv ZSGSRD 30704
17-03-17 21:15:15.568 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:15.568 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:15.568 -07 000000512 INF: FPGA: Recv ZSGSRD 30692
17-03-17 21:15:15.578 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:15.578 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:15.578 -07 000000512 INF: FPGA: Recv ZSGSRD 30697
17-03-17 21:15:15.588 -07 000000626 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:15.588 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:15.588 -07 000000576 INF: FPGA: Recv ZSGSRD 30704
17-03-17 21:15:15.598 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:15.598 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:15.598 -07 000000012 INF: FPGA: Recv ZPIEZORD 26806
17-03-17 21:15:15.608 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:15.608 -07 000000626 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.584 V. Piezo Error = -8.6 V.
17-03-17 21:15:15.608 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.5 um, Read 10 ADC samples: Avg = 30700 (-136.7 uncal um), Error = 0.8 uncal um, Median = 30702 (-136.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30692 (-136.7 uncal um), Max = 30705 (-136.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:15:15.608 -07 000000626 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30700, posNoise = 5, negNoise = 8
17-03-17 21:15:15.608 -07 000000626 INF: Z Motor: After move to -0.137528, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:15.608 -07 000000626 INF: Z Motor: Settle wait time = 1450 ms, measure time = 104 ms (allowed 150 ms), total time = 1554 ms
17-03-17 21:15:15.608 -07 000000626 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:15:15.658 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 21:15:15.658 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:15:15.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:15.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:15.658 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:15.658 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:15:15.658 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:15.658 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:15.658 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:15:15.658 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:15:15.668 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:15:15.668 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:15:15.668 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:15:15.668 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 21:15:15.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:15:15.718 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:15:15.918 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:15:15.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:15:15.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:15:15.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2536866120, 0x0, 559484976) start.
17-03-17 21:15:15.958 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:15:15.958 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 21:15:15.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 21:15:16.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2536866120, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 21:15:16.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:16.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:15:16.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:15:16.058 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:16.058 -07 000000475 INF: Autofocus start
17-03-17 21:15:16.058 -07 000000475 INF: MeasureProfile start
17-03-17 21:15:16.058 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:16.068 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:15:16.068 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:15:16.068 -07 000000475 INF: MeasureProfile done
17-03-17 21:15:16.068 -07 000000475 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:15:16.068 -07 000000475 INF: Autofocus finished
17-03-17 21:15:16.268 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:15:16.268 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:15:16.268 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.137546664763196. ----------
17-03-17 21:15:16.268 -07 000000610 INF: Cycle	48	Tile	12	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:15:16.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28567, sync = True, waitForSettling = True)
17-03-17 21:15:16.278 -07 000000610 INF: Z Motor: Moving to -0.130771 mm, started at -0.137547 mm, distance = 6.78 um
17-03-17 21:15:16.278 -07 000000610 INF: FPGA: Xmit ZDACW 28567\n [Z Motor]
17-03-17 21:15:16.278 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:15:16.288 -07 000000610 INF: FPGA: 'ZDACW 28567' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:16.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:16.288 -07 000000480 INF: FPGA: Recv ZDACR 28567
17-03-17 21:15:16.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:16.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:15:16.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:16.448 -07 000000626 INF: FPGA: Recv ZSGSRD 29656
17-03-17 21:15:16.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:16.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:16.458 -07 000000438 INF: FPGA: Recv ZSGSRD 29645
17-03-17 21:15:16.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:16.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:16.468 -07 000000429 INF: FPGA: Recv ZSGSRD 29648
17-03-17 21:15:16.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:16.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:16.478 -07 000000608 INF: FPGA: Recv ZSGSRD 29646
17-03-17 21:15:16.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:16.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:16.488 -07 000000424 INF: FPGA: Recv ZSGSRD 29644
17-03-17 21:15:16.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:16.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:16.498 -07 000000431 INF: FPGA: Recv ZSGSRD 29652
17-03-17 21:15:16.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:16.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:16.508 -07 000000012 INF: FPGA: Recv ZSGSRD 29642
17-03-17 21:15:16.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:16.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:16.518 -07 000000576 INF: FPGA: Recv ZSGSRD 29646
17-03-17 21:15:16.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:16.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:16.528 -07 000000501 INF: FPGA: Recv ZSGSRD 29646
17-03-17 21:15:16.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:16.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:16.538 -07 000000547 INF: FPGA: Recv ZSGSRD 29643
17-03-17 21:15:16.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:16.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:16.548 -07 000000431 INF: FPGA: Recv ZPIEZORD 25423
17-03-17 21:15:16.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:16.558 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.359 V. Piezo Error = -9.3 V.
17-03-17 21:15:16.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29647 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29646 (-130.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29642 (-130.0 uncal um), Max = 29656 (-130.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:15:16.558 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29647, posNoise = 9, negNoise = 5
17-03-17 21:15:16.558 -07 000000610 INF: Z Motor: After move to -0.130771, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:16.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:15:16.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:16.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:16.558 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:16.558 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:15:16.558 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:15:16.558 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:15:16.558 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:16.558 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:16.558 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:15:16.558 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:15:16.558 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:15:16.558 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:15:16.568 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:15:16.568 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:15:16.568 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:15:16.568 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:15:16.568 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:15:16.568 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:15:16.578 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:15:16.578 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:15:16.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28744 150\n [Camera]
17-03-17 21:15:16.778 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:15:16.858 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:15:16.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:15:17.208 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:15:17.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:15:17.208 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:17.208 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:17.208 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 21:15:17.208 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:15:17.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:15:17.208 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:17.208 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:17.208 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 21:15:17.258 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.99219,
17-03-17 21:15:17.398 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28744 813
17-03-17 21:15:17.548 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:15:17.588 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:15:17.588 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:15:17.588 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:17.598 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 21:15:17.598 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:15:17.598 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:17.598 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:15:17.598 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:15:17.598 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:15:17.598 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:15:17.758 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:15:17.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:15:17.758 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:17.888 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:15:17.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:15:17.888 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:17.888 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:17.888 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 21:15:17.898 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:17.898 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 21:15:17.948 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1364
17-03-17 21:15:17.948 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:15:17.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28744 150' command took 2 ms to send, 1365 ms to get response, and 1371 ms overall
17-03-17 21:15:17.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:15:17.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.130781969377922. ------
17-03-17 21:15:17.958 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:17.958 -07 000000424 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13732 mm
17-03-17 21:15:17.958 -07 000000424 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:15:17.958 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:15:17.958 -07 000000012 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 21:15:17.958 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:17.958 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29997, sync = True, waitForSettling = False)
17-03-17 21:15:17.958 -07 000000608 INF: Z Motor: Moving to -0.137317 mm, started at -0.130782 mm, distance = -6.54 um
17-03-17 21:15:17.968 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:17.968 -07 000000608 INF: FPGA: Xmit ZDACW 29997\n [Z Motor]
17-03-17 21:15:17.968 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:15:17.978 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:17.978 -07 000000608 INF: FPGA: 'ZDACW 29997' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:15:17.978 -07 000000459 INF: FPGA: Recv YRDPOS 141368
17-03-17 21:15:17.988 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:15:17.988 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:15:17.988 -07 000000012 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:17.988 -07 000000012 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:15:17.988 -07 000000012 INF: Y Motor: Moving 1352 steps-32
17-03-17 21:15:17.998 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:17.998 -07 000000475 INF: FPGA: Recv ZDACR 29997
17-03-17 21:15:18.008 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:15:18.008 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:15:18.008 -07 000000608 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 21:15:18.188 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:15:18.188 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:15:18.288 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 21:15:18.288 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:15:18.288 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:18.288 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:15:18.288 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:15:18.288 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:18.288 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:15:18.298 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:15:18.298 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 539 ms.
17-03-17 21:15:18.298 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 21:15:18.378 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:15:18.378 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 21:15:18.418 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:18.418 -07 000000512 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:15:18.428 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:15:18.428 -07 000000012 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:18.428 -07 000000012 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:15:18.428 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.846 mm, average velocity = 2.158 mm/sec
17-03-17 21:15:19.378 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:19.378 -07 000000431 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:15:19.388 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:19.388 -07 000000012 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:19.408 -07 000000012 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:15:19.408 -07 000000012 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:15:19.408 -07 000000012 INF: Y Motor: Moved to 69.8628 after 1450 ms (table move)
17-03-17 21:15:19.408 -07 000000424 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137317 mm (DAC = 29997)
17-03-17 21:15:19.408 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:19.418 -07 000000458 INF: FPGA: Recv ZSGSRD 30669
17-03-17 21:15:19.418 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:15:19.418 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:19.418 -07 000000459 INF: FPGA: Recv ZSGSRD 30666
17-03-17 21:15:19.428 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:19.428 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:19.428 -07 000000547 INF: FPGA: Recv ZSGSRD 30668
17-03-17 21:15:19.438 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:19.438 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:19.438 -07 000000012 INF: FPGA: Recv ZSGSRD 30671
17-03-17 21:15:19.448 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:19.448 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:19.448 -07 000000458 INF: FPGA: Recv ZSGSRD 30664
17-03-17 21:15:19.458 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:19.458 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:19.458 -07 000000475 INF: FPGA: Recv ZSGSRD 30667
17-03-17 21:15:19.468 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:19.468 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:19.468 -07 000000431 INF: FPGA: Recv ZSGSRD 30665
17-03-17 21:15:19.478 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:19.478 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:19.478 -07 000000547 INF: FPGA: Recv ZSGSRD 30660
17-03-17 21:15:19.488 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:19.488 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:19.488 -07 000000512 INF: FPGA: Recv ZSGSRD 30668
17-03-17 21:15:19.498 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:19.498 -07 000000424 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:19.498 -07 000000458 INF: FPGA: Recv ZSGSRD 30668
17-03-17 21:15:19.508 -07 000000424 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:19.508 -07 000000424 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:19.508 -07 000000431 INF: FPGA: Recv ZPIEZORD 26720
17-03-17 21:15:19.518 -07 000000424 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:19.518 -07 000000424 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.577 V. Piezo Error = -8.7 V.
17-03-17 21:15:19.518 -07 000000424 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30667 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30668 (-136.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30660 (-136.5 uncal um), Max = 30671 (-136.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:15:19.518 -07 000000424 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30667, posNoise = 4, negNoise = 7
17-03-17 21:15:19.518 -07 000000424 INF: Z Motor: After move to -0.137317, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:19.518 -07 000000424 INF: Z Motor: Settle wait time = 1453 ms, measure time = 103 ms (allowed 150 ms), total time = 1556 ms
17-03-17 21:15:19.518 -07 000000424 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:15:19.568 -07 000000424 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 21:15:19.568 -07 000000424 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:15:19.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:19.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:19.568 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:19.568 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:19.568 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:15:19.568 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:19.568 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:15:19.568 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:15:19.578 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:15:19.578 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:15:19.588 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:15:19.588 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:15:19.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:15:19.638 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:15:19.838 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:15:19.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:15:19.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:15:19.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 21:15:19.878 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:15:19.878 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 21:15:19.878 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 21:15:19.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 21:15:19.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:19.968 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:15:19.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 21:15:19.978 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:19.978 -07 000000475 INF: Autofocus start
17-03-17 21:15:19.978 -07 000000475 INF: MeasureProfile start
17-03-17 21:15:19.978 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:19.988 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:15:19.988 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:15:19.988 -07 000000475 INF: MeasureProfile done
17-03-17 21:15:19.988 -07 000000475 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 21:15:19.988 -07 000000475 INF: Autofocus finished
17-03-17 21:15:20.188 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:15:20.188 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:15:20.188 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.137334665762518. ----------
17-03-17 21:15:20.188 -07 000000610 INF: Cycle	48	Tile	13	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:15:20.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28475, sync = True, waitForSettling = True)
17-03-17 21:15:20.198 -07 000000610 INF: Z Motor: Moving to -0.130350 mm, started at -0.137335 mm, distance = 6.98 um
17-03-17 21:15:20.198 -07 000000610 INF: FPGA: Xmit ZDACW 28475\n [Z Motor]
17-03-17 21:15:20.198 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:15:20.208 -07 000000610 INF: FPGA: 'ZDACW 28475' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:20.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:20.208 -07 000000012 INF: FPGA: Recv ZDACR 28475
17-03-17 21:15:20.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:20.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:15:20.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:20.368 -07 000000382 INF: FPGA: Recv ZSGSRD 29582
17-03-17 21:15:20.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:20.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:20.378 -07 000000458 INF: FPGA: Recv ZSGSRD 29585
17-03-17 21:15:20.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:20.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:20.388 -07 000000626 INF: FPGA: Recv ZSGSRD 29577
17-03-17 21:15:20.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:20.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:20.398 -07 000000512 INF: FPGA: Recv ZSGSRD 29576
17-03-17 21:15:20.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:20.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:20.408 -07 000000382 INF: FPGA: Recv ZSGSRD 29580
17-03-17 21:15:20.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:20.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:20.418 -07 000000608 INF: FPGA: Recv ZSGSRD 29576
17-03-17 21:15:20.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:20.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:20.428 -07 000000459 INF: FPGA: Recv ZSGSRD 29580
17-03-17 21:15:20.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:20.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:20.438 -07 000000438 INF: FPGA: Recv ZSGSRD 29579
17-03-17 21:15:20.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:20.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:20.448 -07 000000431 INF: FPGA: Recv ZSGSRD 29583
17-03-17 21:15:20.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:20.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:20.458 -07 000000458 INF: FPGA: Recv ZSGSRD 29585
17-03-17 21:15:20.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:20.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:20.468 -07 000000608 INF: FPGA: Recv ZPIEZORD 25304
17-03-17 21:15:20.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:20.478 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.345 V. Piezo Error = -9.4 V.
17-03-17 21:15:20.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29580 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29580 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29576 (-129.5 uncal um), Max = 29585 (-129.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:15:20.478 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29580, posNoise = 5, negNoise = 4
17-03-17 21:15:20.478 -07 000000610 INF: Z Motor: After move to -0.130350, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:20.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:15:20.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:20.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:20.478 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:20.478 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:20.478 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:15:20.478 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:20.478 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:15:20.478 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:15:20.478 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:15:20.478 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:15:20.478 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:15:20.478 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:15:20.478 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:15:20.478 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:15:20.488 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:15:20.488 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:15:20.488 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:15:20.488 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:15:20.488 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:15:20.488 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:15:20.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28652 150\n [Camera]
17-03-17 21:15:20.698 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:15:21.128 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:15:21.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:15:21.128 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:21.128 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:15:21.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:15:21.128 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:21.138 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:21.138 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) start.
17-03-17 21:15:21.138 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:21.138 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) start.
17-03-17 21:15:21.318 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28652 813
17-03-17 21:15:21.468 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:15:21.508 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2569222360, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:15:21.508 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:15:21.508 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:21.518 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2604644624, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:15:21.518 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:15:21.518 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:21.518 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:21.518 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:15:21.518 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:21.528 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:15:21.678 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:15:21.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:15:21.678 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:21.798 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:15:21.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:15:21.798 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:21.798 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:21.798 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:15:21.798 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:21.798 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:15:21.858 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:15:21.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:15:21.868 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:15:21.868 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:15:21.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28652 150' command took 2 ms to send, 1362 ms to get response, and 1368 ms overall
17-03-17 21:15:21.868 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:15:21.868 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.130351547164424. ------
17-03-17 21:15:21.868 -07 000000012 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13664 mm
17-03-17 21:15:21.868 -07 000000012 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:15:21.868 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:21.878 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:15:21.878 -07 000000424 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 21:15:21.878 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29849, sync = True, waitForSettling = False)
17-03-17 21:15:21.878 -07 000000512 INF: Z Motor: Moving to -0.136640 mm, started at -0.130352 mm, distance = -6.29 um
17-03-17 21:15:21.878 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:21.878 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:21.878 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:15:21.878 -07 000000626 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:15:21.888 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:21.888 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:15:21.888 -07 000000424 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:21.888 -07 000000424 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:15:21.888 -07 000000424 INF: Y Motor: Moving 1343 steps-20
17-03-17 21:15:21.898 -07 000000512 INF: FPGA: Xmit ZDACW 29849\n [Z Motor]
17-03-17 21:15:21.898 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:15:21.908 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:15:21.908 -07 000000512 INF: FPGA: 'ZDACW 29849' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:15:21.918 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:21.918 -07 000000431 INF: FPGA: Recv ZDACR 29849
17-03-17 21:15:21.928 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:15:21.928 -07 000000512 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 21:15:22.088 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:15:22.088 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 21:15:22.188 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:15:22.188 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:15:22.188 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:22.188 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 21:15:22.188 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:15:22.188 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:22.188 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:15:22.188 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 21:15:22.188 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:15:22.198 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:15:22.278 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:15:22.278 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 21:15:22.318 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:22.328 -07 000000547 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:15:22.328 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:15:22.328 -07 000000424 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:22.328 -07 000000424 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:15:22.328 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.137 mm/sec
17-03-17 21:15:22.628 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.030322,
17-03-17 21:15:23.278 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:23.278 -07 000000475 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:15:23.288 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:23.288 -07 000000424 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:23.308 -07 000000424 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:15:23.308 -07 000000424 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:15:23.308 -07 000000424 INF: Y Motor: Moved to 70.6880 after 1433 ms (table move)
17-03-17 21:15:23.308 -07 000000012 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136640 mm (DAC = 29849)
17-03-17 21:15:23.308 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:23.318 -07 000000431 INF: FPGA: Recv ZSGSRD 30562
17-03-17 21:15:23.318 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:15:23.318 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:23.318 -07 000000431 INF: FPGA: Recv ZSGSRD 30559
17-03-17 21:15:23.328 -07 000000012 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:23.328 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:23.328 -07 000000512 INF: FPGA: Recv ZSGSRD 30562
17-03-17 21:15:23.338 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:23.338 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:23.338 -07 000000608 INF: FPGA: Recv ZSGSRD 30561
17-03-17 21:15:23.348 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:23.348 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:23.348 -07 000000501 INF: FPGA: Recv ZSGSRD 30554
17-03-17 21:15:23.358 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:23.358 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:23.358 -07 000000431 INF: FPGA: Recv ZSGSRD 30559
17-03-17 21:15:23.368 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:23.368 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:23.368 -07 000000382 INF: FPGA: Recv ZSGSRD 30559
17-03-17 21:15:23.378 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:23.378 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:23.378 -07 000000475 INF: FPGA: Recv ZSGSRD 30554
17-03-17 21:15:23.388 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:23.388 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:23.388 -07 000000501 INF: FPGA: Recv ZSGSRD 30554
17-03-17 21:15:23.398 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:23.398 -07 000000012 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:23.398 -07 000000431 INF: FPGA: Recv ZSGSRD 30561
17-03-17 21:15:23.408 -07 000000012 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:23.408 -07 000000012 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:23.408 -07 000000547 INF: FPGA: Recv ZPIEZORD 26568
17-03-17 21:15:23.418 -07 000000012 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:23.418 -07 000000012 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.555 V. Piezo Error = -8.8 V.
17-03-17 21:15:23.418 -07 000000012 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30558 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30559 (-135.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30554 (-135.8 uncal um), Max = 30562 (-135.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:15:23.418 -07 000000012 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30558, posNoise = 4, negNoise = 4
17-03-17 21:15:23.418 -07 000000012 INF: Z Motor: After move to -0.136640, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:23.418 -07 000000012 INF: Z Motor: Settle wait time = 1436 ms, measure time = 104 ms (allowed 150 ms), total time = 1540 ms
17-03-17 21:15:23.418 -07 000000012 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:15:23.468 -07 000000012 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 21:15:23.468 -07 000000012 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:15:23.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:23.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:23.468 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:23.468 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:23.468 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:15:23.468 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:23.468 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:15:23.468 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:15:23.478 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:15:23.478 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:15:23.488 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:15:23.488 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:15:23.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:15:23.538 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 21:15:23.738 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 21:15:23.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 21:15:23.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:15:23.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) start.
17-03-17 21:15:23.778 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:15:23.778 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:15:23.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 21:15:23.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2550140976, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 21:15:23.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:23.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:15:23.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 21:15:23.878 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:23.878 -07 000000424 INF: Autofocus start
17-03-17 21:15:23.878 -07 000000424 INF: MeasureProfile start
17-03-17 21:15:23.878 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:23.888 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:15:23.888 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:15:23.898 -07 000000424 INF: MeasureProfile done
17-03-17 21:15:23.898 -07 000000424 INF: X=32  Z correction [um]=0.1299841
17-03-17 21:15:23.898 -07 000000424 INF: Autofocus finished
17-03-17 21:15:24.088 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:15:24.088 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:15:24.088 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.136634426639066. ----------
17-03-17 21:15:24.088 -07 000000610 INF: Cycle	48	Tile	14	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:15:24.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28390, sync = True, waitForSettling = True)
17-03-17 21:15:24.098 -07 000000610 INF: Z Motor: Moving to -0.129961 mm, started at -0.136634 mm, distance = 6.67 um
17-03-17 21:15:24.098 -07 000000610 INF: FPGA: Xmit ZDACW 28390\n [Z Motor]
17-03-17 21:15:24.098 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:15:24.108 -07 000000610 INF: FPGA: 'ZDACW 28390' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:15:24.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:24.108 -07 000000475 INF: FPGA: Recv ZDACR 28390
17-03-17 21:15:24.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:24.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:15:24.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:24.268 -07 000000569 INF: FPGA: Recv ZSGSRD 29520
17-03-17 21:15:24.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:24.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:24.278 -07 000000012 INF: FPGA: Recv ZSGSRD 29520
17-03-17 21:15:24.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:24.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:24.288 -07 000000480 INF: FPGA: Recv ZSGSRD 29520
17-03-17 21:15:24.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:24.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:24.298 -07 000000547 INF: FPGA: Recv ZSGSRD 29514
17-03-17 21:15:24.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:24.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:24.308 -07 000000475 INF: FPGA: Recv ZSGSRD 29517
17-03-17 21:15:24.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:24.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:24.318 -07 000000569 INF: FPGA: Recv ZSGSRD 29517
17-03-17 21:15:24.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:24.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:24.328 -07 000000576 INF: FPGA: Recv ZSGSRD 29517
17-03-17 21:15:24.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:24.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:24.338 -07 000000415 INF: FPGA: Recv ZSGSRD 29520
17-03-17 21:15:24.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:24.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:24.348 -07 000000608 INF: FPGA: Recv ZSGSRD 29512
17-03-17 21:15:24.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:24.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:24.358 -07 000000438 INF: FPGA: Recv ZSGSRD 29514
17-03-17 21:15:24.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:24.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:24.368 -07 000000569 INF: FPGA: Recv ZPIEZORD 25224
17-03-17 21:15:24.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:24.378 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.332 V. Piezo Error = -9.4 V.
17-03-17 21:15:24.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29517 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29517 (-129.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29512 (-129.1 uncal um), Max = 29520 (-129.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:15:24.378 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29517, posNoise = 3, negNoise = 5
17-03-17 21:15:24.378 -07 000000610 INF: Z Motor: After move to -0.129961, error = 0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:24.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:15:24.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:24.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:24.378 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:24.378 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:24.378 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:15:24.378 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:24.378 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:15:24.378 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:15:24.378 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:15:24.378 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:15:24.378 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:15:24.378 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:15:24.388 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:15:24.388 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:15:24.388 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:15:24.388 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:15:24.398 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:15:24.398 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:15:24.398 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:15:24.398 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:15:24.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28567 150\n [Camera]
17-03-17 21:15:24.598 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:15:25.028 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:15:25.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:15:25.028 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:25.028 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:25.028 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 21:15:25.028 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:15:25.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:15:25.028 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:25.028 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:25.028 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 21:15:25.218 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28567 813
17-03-17 21:15:25.368 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:15:25.398 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 21:15:25.398 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:15:25.398 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:25.398 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 21:15:25.408 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:15:25.408 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:25.408 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:15:25.408 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:15:25.408 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:15:25.408 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:15:25.578 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:15:25.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:15:25.578 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:25.578 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:15:25.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:15:25.578 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:25.578 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:25.578 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:15:25.578 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:25.578 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:15:25.768 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:15:25.768 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:15:25.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28567 150' command took 2 ms to send, 1362 ms to get response, and 1368 ms overall
17-03-17 21:15:25.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:15:25.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.129946821799493. ------
17-03-17 21:15:25.768 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:25.768 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13631 mm
17-03-17 21:15:25.768 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:15:25.768 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:25.778 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:15:25.778 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:15:25.778 -07 000000431 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 21:15:25.778 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:15:25.778 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29777, sync = True, waitForSettling = False)
17-03-17 21:15:25.778 -07 000000626 INF: Z Motor: Moving to -0.136310 mm, started at -0.129947 mm, distance = -6.36 um
17-03-17 21:15:25.788 -07 000000626 INF: FPGA: Xmit ZDACW 29777\n [Z Motor]
17-03-17 21:15:25.788 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:15:25.798 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:25.798 -07 000000626 INF: FPGA: 'ZDACW 29777' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:15:25.798 -07 000000458 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:15:25.808 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:25.808 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:15:25.808 -07 000000431 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:25.808 -07 000000012 INF: FPGA: Recv ZDACR 29777
17-03-17 21:15:25.808 -07 000000431 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:15:25.808 -07 000000431 INF: Y Motor: Moving 1351 steps-30
17-03-17 21:15:25.818 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:15:25.818 -07 000000626 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 21:15:25.818 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:15:25.968 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:15:25.968 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:15:25.968 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:25.968 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 21:15:25.968 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:15:25.968 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:25.968 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:15:25.968 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:15:25.968 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:15:25.978 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:15:25.978 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 21:15:25.978 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:15:26.188 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:15:26.188 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 21:15:26.228 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:26.228 -07 000000512 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:15:26.238 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:15:26.238 -07 000000431 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:26.238 -07 000000431 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:15:26.238 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.845 mm, average velocity = 2.200 mm/sec
17-03-17 21:15:26.858 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:15:26.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:15:27.188 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:27.188 -07 000000569 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:15:27.198 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:27.198 -07 000000431 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:27.218 -07 000000431 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:15:27.218 -07 000000431 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:15:27.218 -07 000000431 INF: Y Motor: Moved to 71.5186 after 1443 ms (table move)
17-03-17 21:15:27.218 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136310 mm (DAC = 29777)
17-03-17 21:15:27.218 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:27.228 -07 000000012 INF: FPGA: Recv ZSGSRD 30514
17-03-17 21:15:27.228 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:15:27.228 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:27.228 -07 000000458 INF: FPGA: Recv ZSGSRD 30506
17-03-17 21:15:27.238 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:27.238 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:27.238 -07 000000576 INF: FPGA: Recv ZSGSRD 30509
17-03-17 21:15:27.248 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:15:27.248 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:27.248 -07 000000431 INF: FPGA: Recv ZSGSRD 30506
17-03-17 21:15:27.258 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:27.258 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:27.258 -07 000000415 INF: FPGA: Recv ZSGSRD 30506
17-03-17 21:15:27.268 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:27.268 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:27.268 -07 000000512 INF: FPGA: Recv ZSGSRD 30513
17-03-17 21:15:27.278 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:27.278 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:27.278 -07 000000626 INF: FPGA: Recv ZSGSRD 30504
17-03-17 21:15:27.288 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:27.288 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:27.288 -07 000000576 INF: FPGA: Recv ZSGSRD 30505
17-03-17 21:15:27.298 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:27.298 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:27.298 -07 000000415 INF: FPGA: Recv ZSGSRD 30499
17-03-17 21:15:27.308 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:27.308 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:27.308 -07 000000547 INF: FPGA: Recv ZSGSRD 30501
17-03-17 21:15:27.318 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:27.318 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:27.318 -07 000000458 INF: FPGA: Recv ZPIEZORD 26535
17-03-17 21:15:27.328 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:27.328 -07 000000438 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.544 V. Piezo Error = -8.8 V.
17-03-17 21:15:27.328 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30506 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30506 (-135.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30499 (-135.5 uncal um), Max = 30514 (-135.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:15:27.328 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30506, posNoise = 8, negNoise = 7
17-03-17 21:15:27.328 -07 000000438 INF: Z Motor: After move to -0.136310, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:27.328 -07 000000438 INF: Z Motor: Settle wait time = 1441 ms, measure time = 104 ms (allowed 150 ms), total time = 1545 ms
17-03-17 21:15:27.328 -07 000000438 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:15:27.378 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 21:15:27.378 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:15:27.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:27.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:27.378 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:27.378 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:27.378 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:15:27.378 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:27.378 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:15:27.378 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:15:27.388 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms.
17-03-17 21:15:27.388 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:15:27.398 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:15:27.398 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 21:15:27.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:15:27.448 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:15:27.648 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:15:27.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:15:27.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:15:27.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) start.
17-03-17 21:15:27.688 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:15:27.688 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:15:27.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 21:15:27.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 677954600, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:15:27.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:27.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:15:27.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:15:27.788 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:27.788 -07 000000569 INF: Autofocus start
17-03-17 21:15:27.788 -07 000000569 INF: MeasureProfile start
17-03-17 21:15:27.788 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:27.798 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:15:27.798 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:15:27.798 -07 000000569 INF: MeasureProfile done
17-03-17 21:15:27.798 -07 000000569 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 21:15:27.798 -07 000000569 INF: Autofocus finished
17-03-17 21:15:27.998 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:15:27.998 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 21:15:27.998 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.136300367607695. ----------
17-03-17 21:15:28.008 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.024884,
17-03-17 21:15:28.008 -07 000000610 INF: Cycle	48	Tile	15	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:15:28.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28255, sync = True, waitForSettling = True)
17-03-17 21:15:28.008 -07 000000610 INF: Z Motor: Moving to -0.129343 mm, started at -0.136300 mm, distance = 6.96 um
17-03-17 21:15:28.028 -07 000000610 INF: FPGA: Xmit ZDACW 28255\n [Z Motor]
17-03-17 21:15:28.028 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:15:28.038 -07 000000610 INF: FPGA: 'ZDACW 28255' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:15:28.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:28.048 -07 000000424 INF: FPGA: Recv ZDACR 28255
17-03-17 21:15:28.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:15:28.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:15:28.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:28.208 -07 000000576 INF: FPGA: Recv ZSGSRD 29426
17-03-17 21:15:28.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:28.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:28.218 -07 000000424 INF: FPGA: Recv ZSGSRD 29422
17-03-17 21:15:28.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:28.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:28.228 -07 000000608 INF: FPGA: Recv ZSGSRD 29421
17-03-17 21:15:28.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:28.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:28.238 -07 000000501 INF: FPGA: Recv ZSGSRD 29427
17-03-17 21:15:28.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:28.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:28.248 -07 000000512 INF: FPGA: Recv ZSGSRD 29427
17-03-17 21:15:28.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:28.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:28.258 -07 000000415 INF: FPGA: Recv ZSGSRD 29422
17-03-17 21:15:28.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:28.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:28.268 -07 000000459 INF: FPGA: Recv ZSGSRD 29423
17-03-17 21:15:28.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:28.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:28.278 -07 000000576 INF: FPGA: Recv ZSGSRD 29426
17-03-17 21:15:28.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:28.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:28.288 -07 000000431 INF: FPGA: Recv ZSGSRD 29428
17-03-17 21:15:28.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:28.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:28.298 -07 000000626 INF: FPGA: Recv ZSGSRD 29419
17-03-17 21:15:28.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:28.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:28.318 -07 000000424 INF: FPGA: Recv ZPIEZORD 25159
17-03-17 21:15:28.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:15:28.328 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.311 V. Piezo Error = -9.4 V.
17-03-17 21:15:28.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29424 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29424 (-128.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29419 (-128.5 uncal um), Max = 29428 (-128.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:15:28.328 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29424, posNoise = 4, negNoise = 5
17-03-17 21:15:28.328 -07 000000610 INF: Z Motor: After move to -0.129343, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:28.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 317 ms)
17-03-17 21:15:28.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:28.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:28.328 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:28.328 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:28.328 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:15:28.328 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:28.328 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:15:28.328 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:15:28.328 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:15:28.328 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:15:28.328 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:15:28.328 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:15:28.338 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:15:28.338 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:15:28.338 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:15:28.338 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:15:28.348 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:15:28.348 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:15:28.348 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:15:28.348 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:15:28.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28432 150\n [Camera]
17-03-17 21:15:28.558 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:15:28.988 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:15:28.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:15:28.988 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:28.988 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:28.988 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 21:15:28.998 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:15:28.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:15:28.998 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:28.998 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:28.998 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 21:15:29.188 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28432 813
17-03-17 21:15:29.338 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:15:29.378 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:15:29.378 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:15:29.378 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:29.378 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:15:29.378 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:15:29.378 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:29.378 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:29.378 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:29.378 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:15:29.388 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:15:29.538 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:15:29.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:15:29.538 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:29.548 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:15:29.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:15:29.548 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:29.548 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:29.548 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:15:29.548 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:29.548 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:15:29.728 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:15:29.728 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:15:29.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28432 150' command took 2 ms to send, 1358 ms to get response, and 1386 ms overall
17-03-17 21:15:29.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:15:29.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.129349370070309. ------
17-03-17 21:15:29.738 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:29.738 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13551 mm
17-03-17 21:15:29.738 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:15:29.738 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:29.738 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:15:29.738 -07 000000382 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 21:15:29.738 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29603, sync = True, waitForSettling = False)
17-03-17 21:15:29.738 -07 000000475 INF: Z Motor: Moving to -0.135514 mm, started at -0.129349 mm, distance = -6.16 um
17-03-17 21:15:29.748 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:15:29.748 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:29.748 -07 000000608 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:15:29.758 -07 000000475 INF: FPGA: Xmit ZDACW 29603\n [Z Motor]
17-03-17 21:15:29.758 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:29.758 -07 000000382 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:29.758 -07 000000382 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:15:29.758 -07 000000382 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:15:29.758 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:15:29.768 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:15:29.768 -07 000000475 INF: FPGA: 'ZDACW 29603' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:15:29.778 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:15:29.788 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:29.788 -07 000000012 INF: FPGA: Recv ZDACR 29603
17-03-17 21:15:29.798 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:15:29.798 -07 000000475 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 21:15:29.918 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:15:29.918 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 21:15:29.918 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:29.918 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:15:29.928 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 21:15:29.928 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:29.928 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:29.928 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:29.928 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:15:29.938 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:15:29.968 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:15:29.968 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 21:15:30.148 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:15:30.148 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:15:30.188 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:30.188 -07 000000480 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:15:30.198 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:15:30.198 -07 000000382 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:30.198 -07 000000382 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:15:30.198 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 21:15:31.148 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:31.148 -07 000000458 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:15:31.158 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:31.158 -07 000000382 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:31.178 -07 000000382 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:15:31.178 -07 000000382 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:15:31.178 -07 000000382 INF: Y Motor: Moved to 72.3491 after 1435 ms (table move)
17-03-17 21:15:31.178 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135514 mm (DAC = 29603)
17-03-17 21:15:31.178 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:31.188 -07 000000480 INF: FPGA: Recv ZSGSRD 30388
17-03-17 21:15:31.188 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:15:31.188 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:31.188 -07 000000501 INF: FPGA: Recv ZSGSRD 30382
17-03-17 21:15:31.198 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:31.198 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:31.198 -07 000000459 INF: FPGA: Recv ZSGSRD 30378
17-03-17 21:15:31.208 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:31.208 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:31.208 -07 000000475 INF: FPGA: Recv ZSGSRD 30396
17-03-17 21:15:31.218 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:31.218 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:31.218 -07 000000626 INF: FPGA: Recv ZSGSRD 30385
17-03-17 21:15:31.228 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:31.228 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:31.228 -07 000000547 INF: FPGA: Recv ZSGSRD 30379
17-03-17 21:15:31.238 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:31.238 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:31.238 -07 000000459 INF: FPGA: Recv ZSGSRD 30393
17-03-17 21:15:31.248 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:31.248 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:31.248 -07 000000458 INF: FPGA: Recv ZSGSRD 30384
17-03-17 21:15:31.258 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:31.258 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:31.258 -07 000000415 INF: FPGA: Recv ZSGSRD 30384
17-03-17 21:15:31.268 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:31.268 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:31.268 -07 000000576 INF: FPGA: Recv ZSGSRD 30387
17-03-17 21:15:31.278 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:31.278 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:31.278 -07 000000626 INF: FPGA: Recv ZPIEZORD 26438
17-03-17 21:15:31.288 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:31.288 -07 000000569 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.517 V. Piezo Error = -8.7 V.
17-03-17 21:15:31.288 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30386 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30384 (-134.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30378 (-134.7 uncal um), Max = 30396 (-134.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:15:31.288 -07 000000569 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30386, posNoise = 10, negNoise = 8
17-03-17 21:15:31.288 -07 000000569 INF: Z Motor: After move to -0.135514, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:31.288 -07 000000569 INF: Z Motor: Settle wait time = 1435 ms, measure time = 105 ms (allowed 150 ms), total time = 1540 ms
17-03-17 21:15:31.288 -07 000000569 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:15:31.338 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 21:15:31.338 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:15:31.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:31.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:31.338 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:31.338 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:31.338 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:15:31.338 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:31.338 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:15:31.338 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:15:31.348 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:15:31.348 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:15:31.348 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:15:31.348 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:15:31.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:15:31.398 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:15:31.598 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:15:31.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:15:31.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:15:31.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 21:15:31.638 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:15:31.638 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 21:15:31.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 21:15:31.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:15:31.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:31.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:15:31.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:15:31.738 -07 000000431 INF: Autofocus start
17-03-17 21:15:31.738 -07 000000431 INF: MeasureProfile start
17-03-17 21:15:31.738 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:31.738 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:31.748 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:15:31.748 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:15:31.748 -07 000000431 INF: MeasureProfile done
17-03-17 21:15:31.748 -07 000000431 INF: X=48  Z correction [um]=0.2069503
17-03-17 21:15:31.748 -07 000000431 INF: Autofocus finished
17-03-17 21:15:31.858 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:15:31.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:15:31.948 -07 000000458 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:15:31.948 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:15:31.948 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.135529462150683. ----------
17-03-17 21:15:31.958 -07 000000610 INF: Cycle	48	Tile	16	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:15:31.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28161, sync = True, waitForSettling = True)
17-03-17 21:15:31.958 -07 000000610 INF: Z Motor: Moving to -0.128913 mm, started at -0.135529 mm, distance = 6.62 um
17-03-17 21:15:31.958 -07 000000610 INF: FPGA: Xmit ZDACW 28161\n [Z Motor]
17-03-17 21:15:31.958 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:15:31.968 -07 000000610 INF: FPGA: 'ZDACW 28161' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:15:31.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:31.968 -07 000000569 INF: FPGA: Recv ZDACR 28161
17-03-17 21:15:31.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:31.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:15:32.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:32.128 -07 000000608 INF: FPGA: Recv ZSGSRD 29355
17-03-17 21:15:32.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:32.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:32.138 -07 000000012 INF: FPGA: Recv ZSGSRD 29354
17-03-17 21:15:32.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:32.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:32.148 -07 000000429 INF: FPGA: Recv ZSGSRD 29358
17-03-17 21:15:32.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:32.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:32.158 -07 000000480 INF: FPGA: Recv ZSGSRD 29354
17-03-17 21:15:32.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:32.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:32.168 -07 000000608 INF: FPGA: Recv ZSGSRD 29357
17-03-17 21:15:32.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:32.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:32.178 -07 000000459 INF: FPGA: Recv ZSGSRD 29363
17-03-17 21:15:32.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:32.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:32.188 -07 000000501 INF: FPGA: Recv ZSGSRD 29356
17-03-17 21:15:32.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:32.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:32.198 -07 000000569 INF: FPGA: Recv ZSGSRD 29357
17-03-17 21:15:32.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:32.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:32.208 -07 000000459 INF: FPGA: Recv ZSGSRD 29354
17-03-17 21:15:32.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:32.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:32.218 -07 000000608 INF: FPGA: Recv ZSGSRD 29357
17-03-17 21:15:32.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:32.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:32.228 -07 000000512 INF: FPGA: Recv ZPIEZORD 25105
17-03-17 21:15:32.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:32.238 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.297 V. Piezo Error = -9.3 V.
17-03-17 21:15:32.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29356 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29356 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29354 (-128.1 uncal um), Max = 29363 (-128.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 21:15:32.238 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29356, posNoise = 7, negNoise = 2
17-03-17 21:15:32.238 -07 000000610 INF: Z Motor: After move to -0.128913, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:32.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:15:32.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:32.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:32.238 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:32.238 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:15:32.238 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:15:32.238 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:32.238 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:15:32.238 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:32.238 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:15:32.238 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:15:32.238 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:15:32.238 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:15:32.238 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:15:32.238 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:15:32.248 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:15:32.248 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:15:32.258 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 21:15:32.258 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:15:32.258 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 21:15:32.258 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:15:32.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28337 150\n [Camera]
17-03-17 21:15:32.458 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:15:32.888 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:15:32.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:15:32.888 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:32.888 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:32.888 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 21:15:32.888 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:15:32.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:15:32.898 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:32.898 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:32.898 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 21:15:33.078 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28337 813
17-03-17 21:15:33.228 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:15:33.288 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:15:33.288 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:15:33.288 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:33.288 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:15:33.288 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:15:33.288 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:33.298 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:33.298 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:15:33.298 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:33.298 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 21:15:33.388 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.98264,
17-03-17 21:15:33.438 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1171
17-03-17 21:15:33.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1171
17-03-17 21:15:33.438 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:33.548 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1171
17-03-17 21:15:33.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1171
17-03-17 21:15:33.558 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:33.558 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:33.558 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:15:33.558 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:33.558 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:15:33.628 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:15:33.628 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:15:33.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28337 150' command took 2 ms to send, 1357 ms to get response, and 1369 ms overall
17-03-17 21:15:33.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:15:33.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.12891252364467. ------
17-03-17 21:15:33.638 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:33.638 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13540 mm
17-03-17 21:15:33.638 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:15:33.638 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:33.638 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:15:33.638 -07 000000431 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 21:15:33.638 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 29578, sync = True, waitForSettling = False)
17-03-17 21:15:33.638 -07 000000459 INF: Z Motor: Moving to -0.135399 mm, started at -0.128913 mm, distance = -6.49 um
17-03-17 21:15:33.648 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:15:33.648 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:33.648 -07 000000429 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:15:33.658 -07 000000459 INF: FPGA: Xmit ZDACW 29578\n [Z Motor]
17-03-17 21:15:33.658 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:15:33.658 -07 000000431 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:33.658 -07 000000431 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:15:33.658 -07 000000431 INF: Y Motor: Moving 1350 steps-28
17-03-17 21:15:33.658 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:15:33.668 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:15:33.668 -07 000000459 INF: FPGA: 'ZDACW 29578' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 21:15:33.678 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:15:33.688 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:33.688 -07 000000576 INF: FPGA: Recv ZDACR 29578
17-03-17 21:15:33.698 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:15:33.698 -07 000000459 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 21:15:33.868 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:15:33.868 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:15:33.938 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 21:15:33.938 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:15:33.938 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:33.948 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:15:33.948 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:15:33.948 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:15:33.948 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:33.948 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:15:33.948 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:15:33.948 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 21:15:34.048 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 21:15:34.048 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 395 ms overall
17-03-17 21:15:34.088 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:34.088 -07 000000382 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:15:34.098 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:15:34.098 -07 000000431 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:34.098 -07 000000431 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 21:15:34.098 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.843 mm, average velocity = 2.135 mm/sec
17-03-17 21:15:35.048 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:35.048 -07 000000569 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:15:35.058 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:35.058 -07 000000431 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:35.078 -07 000000431 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:15:35.078 -07 000000431 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:15:35.078 -07 000000431 INF: Y Motor: Moved to 73.1758 after 1435 ms (table move)
17-03-17 21:15:35.078 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135399 mm (DAC = 29578)
17-03-17 21:15:35.078 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:35.088 -07 000000501 INF: FPGA: Recv ZSGSRD 30370
17-03-17 21:15:35.088 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:15:35.088 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:35.088 -07 000000480 INF: FPGA: Recv ZSGSRD 30359
17-03-17 21:15:35.098 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:35.098 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:35.098 -07 000000429 INF: FPGA: Recv ZSGSRD 30363
17-03-17 21:15:35.108 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:35.108 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:35.108 -07 000000475 INF: FPGA: Recv ZSGSRD 30370
17-03-17 21:15:35.118 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:35.118 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:35.118 -07 000000424 INF: FPGA: Recv ZSGSRD 30374
17-03-17 21:15:35.128 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:35.128 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:35.128 -07 000000382 INF: FPGA: Recv ZSGSRD 30363
17-03-17 21:15:35.138 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:35.138 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:35.138 -07 000000475 INF: FPGA: Recv ZSGSRD 30357
17-03-17 21:15:35.148 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:35.148 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:35.148 -07 000000415 INF: FPGA: Recv ZSGSRD 30367
17-03-17 21:15:35.158 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:35.158 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:35.158 -07 000000431 INF: FPGA: Recv ZSGSRD 30360
17-03-17 21:15:35.168 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:35.168 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:35.168 -07 000000438 INF: FPGA: Recv ZSGSRD 30360
17-03-17 21:15:35.178 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:35.178 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:35.178 -07 000000459 INF: FPGA: Recv ZPIEZORD 26426
17-03-17 21:15:35.188 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:35.188 -07 000000547 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.513 V. Piezo Error = -8.7 V.
17-03-17 21:15:35.188 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30364 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30363 (-134.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30357 (-134.6 uncal um), Max = 30374 (-134.7 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:15:35.188 -07 000000547 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30364, posNoise = 10, negNoise = 7
17-03-17 21:15:35.188 -07 000000547 INF: Z Motor: After move to -0.135399, error = 0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:35.188 -07 000000547 INF: Z Motor: Settle wait time = 1438 ms, measure time = 104 ms (allowed 150 ms), total time = 1542 ms
17-03-17 21:15:35.188 -07 000000547 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:15:35.238 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 21:15:35.248 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:15:35.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:35.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:35.248 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:35.248 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:35.248 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:15:35.248 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:35.248 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:15:35.248 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:15:35.258 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:15:35.258 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:15:35.268 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:15:35.268 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:15:35.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:15:35.318 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:15:35.518 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:15:35.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:15:35.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:15:35.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 21:15:35.558 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:15:35.558 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 21:15:35.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 21:15:35.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:15:35.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:35.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:15:35.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:15:35.658 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:35.658 -07 000000476 INF: Autofocus start
17-03-17 21:15:35.658 -07 000000476 INF: MeasureProfile start
17-03-17 21:15:35.658 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:35.668 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:15:35.668 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:15:35.668 -07 000000476 INF: MeasureProfile done
17-03-17 21:15:35.668 -07 000000476 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:15:35.668 -07 000000476 INF: Autofocus finished
17-03-17 21:15:35.868 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:15:35.868 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:15:35.868 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.135388129483565. ----------
17-03-17 21:15:35.868 -07 000000610 INF: Cycle	48	Tile	17	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:15:35.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28102, sync = True, waitForSettling = True)
17-03-17 21:15:35.878 -07 000000610 INF: Z Motor: Moving to -0.128643 mm, started at -0.135388 mm, distance = 6.75 um
17-03-17 21:15:35.878 -07 000000610 INF: FPGA: Xmit ZDACW 28102\n [Z Motor]
17-03-17 21:15:35.878 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:15:35.888 -07 000000610 INF: FPGA: 'ZDACW 28102' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:35.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:35.888 -07 000000608 INF: FPGA: Recv ZDACR 28102
17-03-17 21:15:35.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:35.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:15:36.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:36.048 -07 000000480 INF: FPGA: Recv ZSGSRD 29314
17-03-17 21:15:36.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:36.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:36.058 -07 000000475 INF: FPGA: Recv ZSGSRD 29318
17-03-17 21:15:36.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:36.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:36.068 -07 000000547 INF: FPGA: Recv ZSGSRD 29312
17-03-17 21:15:36.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:36.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:36.078 -07 000000608 INF: FPGA: Recv ZSGSRD 29310
17-03-17 21:15:36.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:36.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:36.088 -07 000000012 INF: FPGA: Recv ZSGSRD 29314
17-03-17 21:15:36.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:36.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:36.098 -07 000000459 INF: FPGA: Recv ZSGSRD 29312
17-03-17 21:15:36.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:36.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:36.108 -07 000000501 INF: FPGA: Recv ZSGSRD 29318
17-03-17 21:15:36.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:36.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:36.118 -07 000000547 INF: FPGA: Recv ZSGSRD 29309
17-03-17 21:15:36.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:36.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:36.128 -07 000000627 INF: FPGA: Recv ZSGSRD 29319
17-03-17 21:15:36.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:36.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:36.138 -07 000000576 INF: FPGA: Recv ZSGSRD 29312
17-03-17 21:15:36.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:36.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:36.148 -07 000000459 INF: FPGA: Recv ZPIEZORD 25043
17-03-17 21:15:36.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:36.158 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.288 V. Piezo Error = -9.4 V.
17-03-17 21:15:36.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29314 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29313 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29309 (-127.8 uncal um), Max = 29319 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:15:36.158 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29314, posNoise = 5, negNoise = 5
17-03-17 21:15:36.158 -07 000000610 INF: Z Motor: After move to -0.128643, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:36.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:15:36.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:36.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:36.158 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:36.158 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:15:36.158 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:15:36.158 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:36.158 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:15:36.158 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:36.158 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:15:36.158 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:15:36.158 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:15:36.158 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:15:36.158 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:15:36.158 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:15:36.158 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:15:36.158 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:15:36.168 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:15:36.168 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:15:36.178 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:15:36.178 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:15:36.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28279 150\n [Camera]
17-03-17 21:15:36.378 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:15:36.808 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:15:36.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:15:36.808 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:36.808 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:36.808 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 21:15:36.808 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:15:36.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:15:36.808 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:36.808 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:36.808 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 21:15:36.858 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:15:36.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:15:36.998 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28279 813
17-03-17 21:15:37.148 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:15:37.188 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:15:37.188 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:15:37.188 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:15:37.188 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:37.188 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:15:37.188 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:37.188 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:37.198 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:37.198 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:15:37.198 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:15:37.358 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:15:37.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:15:37.358 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:37.468 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:15:37.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:15:37.468 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:37.468 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:37.468 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:15:37.468 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:37.468 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:15:37.548 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:15:37.548 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:15:37.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28279 150' command took 2 ms to send, 1362 ms to get response, and 1369 ms overall
17-03-17 21:15:37.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:15:37.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.128642706734716. ------
17-03-17 21:15:37.548 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:37.548 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13499 mm
17-03-17 21:15:37.548 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:15:37.558 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:15:37.558 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29489, sync = True, waitForSettling = False)
17-03-17 21:15:37.558 -07 000000438 INF: Z Motor: Moving to -0.134992 mm, started at -0.128643 mm, distance = -6.35 um
17-03-17 21:15:37.558 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:37.558 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:15:37.558 -07 000000438 INF: FPGA: Xmit ZDACW 29489\n [Z Motor]
17-03-17 21:15:37.558 -07 000000476 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 21:15:37.558 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:15:37.568 -07 000000438 INF: FPGA: 'ZDACW 29489' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:15:37.568 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:37.568 -07 000000415 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:15:37.578 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:15:37.578 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:15:37.578 -07 000000476 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:37.578 -07 000000476 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:15:37.578 -07 000000476 INF: Y Motor: Moving 1355 steps-34
17-03-17 21:15:37.588 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:37.588 -07 000000512 INF: FPGA: Recv ZDACR 29489
17-03-17 21:15:37.598 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:15:37.598 -07 000000438 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 21:15:37.598 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:15:37.778 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:15:37.778 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 21:15:37.868 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:15:37.868 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:15:37.868 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:37.868 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 21:15:37.868 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:15:37.868 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:37.868 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:37.868 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 21:15:37.868 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:37.878 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:15:37.968 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:15:37.968 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 21:15:37.998 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:38.008 -07 000000429 INF: FPGA: Recv YRDPOS 151567
17-03-17 21:15:38.008 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:15:38.008 -07 000000476 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:38.008 -07 000000476 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:15:38.008 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.847 mm, average velocity = 2.138 mm/sec
17-03-17 21:15:38.748 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 3.999021,
17-03-17 21:15:38.958 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:38.958 -07 000000459 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:15:38.968 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:38.968 -07 000000476 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:38.978 -07 000000476 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:15:38.978 -07 000000476 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:15:38.978 -07 000000476 INF: Y Motor: Moved to 74.0078 after 1425 ms (table move)
17-03-17 21:15:38.988 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134992 mm (DAC = 29489)
17-03-17 21:15:38.988 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:38.988 -07 000000459 INF: FPGA: Recv ZSGSRD 30305
17-03-17 21:15:38.998 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:38.998 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:38.998 -07 000000576 INF: FPGA: Recv ZSGSRD 30302
17-03-17 21:15:39.008 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:39.008 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:39.008 -07 000000547 INF: FPGA: Recv ZSGSRD 30306
17-03-17 21:15:39.018 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:39.018 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:39.018 -07 000000429 INF: FPGA: Recv ZSGSRD 30308
17-03-17 21:15:39.028 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:39.028 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:39.028 -07 000000431 INF: FPGA: Recv ZSGSRD 30307
17-03-17 21:15:39.038 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:39.038 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:39.038 -07 000000627 INF: FPGA: Recv ZSGSRD 30303
17-03-17 21:15:39.048 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:39.048 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:39.048 -07 000000438 INF: FPGA: Recv ZSGSRD 30305
17-03-17 21:15:39.058 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:39.068 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:39.068 -07 000000429 INF: FPGA: Recv ZSGSRD 30302
17-03-17 21:15:39.078 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:15:39.098 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:39.098 -07 000000626 INF: FPGA: Recv ZSGSRD 30303
17-03-17 21:15:39.108 -07 000000569 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:15:39.108 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:39.108 -07 000000547 INF: FPGA: Recv ZSGSRD 30302
17-03-17 21:15:39.118 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:39.128 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:39.128 -07 000000415 INF: FPGA: Recv ZPIEZORD 26368
17-03-17 21:15:39.138 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:15:39.138 -07 000000569 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.500 V. Piezo Error = -8.7 V.
17-03-17 21:15:39.138 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30304 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30304 (-134.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30302 (-134.2 uncal um), Max = 30308 (-134.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 21:15:39.138 -07 000000569 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30304, posNoise = 4, negNoise = 2
17-03-17 21:15:39.138 -07 000000569 INF: Z Motor: After move to -0.134992, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:39.138 -07 000000569 INF: Z Motor: Settle wait time = 1428 ms, measure time = 150 ms (allowed 150 ms), total time = 1578 ms
17-03-17 21:15:39.138 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 21:15:39.138 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:15:39.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:39.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:39.138 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:39.148 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:15:39.148 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:39.148 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:39.148 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:15:39.148 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:15:39.148 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:15:39.148 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:15:39.158 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:15:39.158 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:15:39.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:15:39.198 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:15:39.398 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:15:39.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:15:39.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:15:39.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 21:15:39.438 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:15:39.438 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 21:15:39.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:15:39.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 21:15:39.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:39.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:15:39.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 21:15:39.538 -07 000000608 INF: Autofocus start
17-03-17 21:15:39.538 -07 000000608 INF: MeasureProfile start
17-03-17 21:15:39.538 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:39.538 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:39.548 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:15:39.548 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:15:39.548 -07 000000608 INF: MeasureProfile done
17-03-17 21:15:39.548 -07 000000608 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:15:39.548 -07 000000608 INF: Autofocus finished
17-03-17 21:15:39.748 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:15:39.748 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:15:39.748 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.135002676755059. ----------
17-03-17 21:15:39.748 -07 000000610 INF: Cycle	48	Tile	18	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:15:39.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27997, sync = True, waitForSettling = True)
17-03-17 21:15:39.758 -07 000000610 INF: Z Motor: Moving to -0.128162 mm, started at -0.135003 mm, distance = 6.84 um
17-03-17 21:15:39.758 -07 000000610 INF: FPGA: Xmit ZDACW 27997\n [Z Motor]
17-03-17 21:15:39.758 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:15:39.768 -07 000000610 INF: FPGA: 'ZDACW 27997' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:39.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:39.768 -07 000000431 INF: FPGA: Recv ZDACR 27997
17-03-17 21:15:39.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:39.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:15:39.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:39.928 -07 000000480 INF: FPGA: Recv ZSGSRD 29241
17-03-17 21:15:39.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:39.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:39.938 -07 000000438 INF: FPGA: Recv ZSGSRD 29238
17-03-17 21:15:39.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:39.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:39.948 -07 000000512 INF: FPGA: Recv ZSGSRD 29239
17-03-17 21:15:39.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:39.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:39.958 -07 000000576 INF: FPGA: Recv ZSGSRD 29237
17-03-17 21:15:39.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:39.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:39.968 -07 000000431 INF: FPGA: Recv ZSGSRD 29240
17-03-17 21:15:39.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:39.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:39.978 -07 000000476 INF: FPGA: Recv ZSGSRD 29239
17-03-17 21:15:39.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:39.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:39.988 -07 000000569 INF: FPGA: Recv ZSGSRD 29235
17-03-17 21:15:39.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:39.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:39.998 -07 000000458 INF: FPGA: Recv ZSGSRD 29243
17-03-17 21:15:40.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:40.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:40.008 -07 000000475 INF: FPGA: Recv ZSGSRD 29237
17-03-17 21:15:40.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:40.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:40.018 -07 000000459 INF: FPGA: Recv ZSGSRD 29245
17-03-17 21:15:40.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:40.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:40.028 -07 000000480 INF: FPGA: Recv ZPIEZORD 24964
17-03-17 21:15:40.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:40.038 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.272 V. Piezo Error = -9.4 V.
17-03-17 21:15:40.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29239 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29239 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29235 (-127.4 uncal um), Max = 29245 (-127.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:15:40.038 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29239, posNoise = 6, negNoise = 4
17-03-17 21:15:40.038 -07 000000610 INF: Z Motor: After move to -0.128162, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:40.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:15:40.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:40.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:40.038 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:40.038 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:40.038 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:15:40.038 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:15:40.038 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:15:40.038 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:40.038 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:15:40.038 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:15:40.038 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:15:40.038 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:15:40.048 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:15:40.048 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:15:40.048 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:15:40.048 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:15:40.058 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:15:40.058 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:15:40.058 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:15:40.058 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:15:40.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28173 150\n [Camera]
17-03-17 21:15:40.258 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:15:40.688 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:15:40.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:15:40.688 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:40.688 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:40.688 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 21:15:40.688 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:15:40.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:15:40.688 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:40.688 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:40.688 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 21:15:40.878 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28173 813
17-03-17 21:15:41.028 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:15:41.068 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:15:41.068 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:15:41.068 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:41.068 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:15:41.068 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:15:41.068 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:41.068 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:41.068 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:41.068 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:15:41.078 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:15:41.228 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:15:41.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:15:41.238 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:41.248 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:15:41.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:15:41.248 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:41.248 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:41.248 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:15:41.248 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:41.248 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:15:41.428 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:15:41.428 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:15:41.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28173 150' command took 2 ms to send, 1361 ms to get response, and 1369 ms overall
17-03-17 21:15:41.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:15:41.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.128160890824084. ------
17-03-17 21:15:41.428 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:41.428 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13456 mm
17-03-17 21:15:41.428 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:15:41.438 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:41.438 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:15:41.438 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:15:41.438 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:15:41.438 -07 000000547 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 21:15:41.438 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29395, sync = True, waitForSettling = False)
17-03-17 21:15:41.438 -07 000000576 INF: Z Motor: Moving to -0.134562 mm, started at -0.128161 mm, distance = -6.40 um
17-03-17 21:15:41.448 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:41.448 -07 000000458 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:15:41.458 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:15:41.458 -07 000000547 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:41.458 -07 000000547 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:15:41.458 -07 000000547 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:15:41.458 -07 000000576 INF: FPGA: Xmit ZDACW 29395\n [Z Motor]
17-03-17 21:15:41.458 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 21:15:41.468 -07 000000576 INF: FPGA: 'ZDACW 29395' command took 1 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:15:41.468 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:41.468 -07 000000512 INF: FPGA: Recv ZDACR 29395
17-03-17 21:15:41.478 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:41.478 -07 000000576 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 21:15:41.478 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:15:41.638 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:15:41.638 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:15:41.648 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 21:15:41.648 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:15:41.648 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:41.648 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 21:15:41.648 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:15:41.648 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:41.648 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:41.648 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-17 21:15:41.648 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:41.658 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:15:41.848 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 21:15:41.858 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-17 21:15:41.858 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:15:41.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 47. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:15:41.878 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:41.878 -07 000000512 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:15:41.888 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:15:41.888 -07 000000547 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:41.888 -07 000000547 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 21:15:41.888 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.845 mm, average velocity = 2.117 mm/sec
17-03-17 21:15:42.838 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:42.838 -07 000000501 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:15:42.848 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:42.848 -07 000000547 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:42.858 -07 000000547 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:15:42.858 -07 000000547 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:15:42.858 -07 000000547 INF: Y Motor: Moved to 74.8315 after 1424 ms (table move)
17-03-17 21:15:42.858 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134562 mm (DAC = 29395)
17-03-17 21:15:42.858 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:42.868 -07 000000501 INF: FPGA: Recv ZSGSRD 30243
17-03-17 21:15:42.868 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:15:42.868 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:42.868 -07 000000512 INF: FPGA: Recv ZSGSRD 30240
17-03-17 21:15:42.878 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:15:42.878 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:42.878 -07 000000476 INF: FPGA: Recv ZSGSRD 30229
17-03-17 21:15:42.888 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:42.888 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:42.888 -07 000000424 INF: FPGA: Recv ZSGSRD 30229
17-03-17 21:15:42.898 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:42.898 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:42.898 -07 000000012 INF: FPGA: Recv ZSGSRD 30233
17-03-17 21:15:42.908 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:42.908 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:42.908 -07 000000501 INF: FPGA: Recv ZSGSRD 30239
17-03-17 21:15:42.918 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:42.918 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:42.918 -07 000000475 INF: FPGA: Recv ZSGSRD 30243
17-03-17 21:15:42.928 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:42.928 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:42.928 -07 000000480 INF: FPGA: Recv ZSGSRD 30233
17-03-17 21:15:42.938 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:42.938 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:42.938 -07 000000569 INF: FPGA: Recv ZSGSRD 30237
17-03-17 21:15:42.948 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:42.948 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:42.948 -07 000000626 INF: FPGA: Recv ZSGSRD 30232
17-03-17 21:15:42.958 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:42.958 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:42.958 -07 000000576 INF: FPGA: Recv ZPIEZORD 26273
17-03-17 21:15:42.968 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:42.968 -07 000000627 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.485 V. Piezo Error = -8.7 V.
17-03-17 21:15:42.968 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30236 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30235 (-133.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30229 (-133.7 uncal um), Max = 30243 (-133.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:15:42.968 -07 000000627 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30236, posNoise = 7, negNoise = 7
17-03-17 21:15:42.968 -07 000000627 INF: Z Motor: After move to -0.134562, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:42.968 -07 000000627 INF: Z Motor: Settle wait time = 1427 ms, measure time = 102 ms (allowed 150 ms), total time = 1529 ms
17-03-17 21:15:42.968 -07 000000627 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:15:43.018 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 21:15:43.018 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:15:43.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:43.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:43.018 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:43.018 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:43.018 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:15:43.018 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:43.018 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:15:43.018 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:15:43.028 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:15:43.028 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:15:43.038 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:15:43.038 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 21:15:43.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:15:43.088 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:15:43.288 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:15:43.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:15:43.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:15:43.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 21:15:43.328 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:15:43.328 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:15:43.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:15:43.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 21:15:43.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:43.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:15:43.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 21:15:43.428 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:15:43.428 -07 000000438 INF: Autofocus start
17-03-17 21:15:43.428 -07 000000438 INF: MeasureProfile start
17-03-17 21:15:43.438 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:15:43.438 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:15:43.438 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:15:43.448 -07 000000438 INF: MeasureProfile done
17-03-17 21:15:43.448 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:15:43.448 -07 000000438 INF: Autofocus finished
17-03-17 21:15:43.638 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:15:43.638 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 21:15:43.638 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.134565830329419. ----------
17-03-17 21:15:43.648 -07 000000610 INF: Cycle	48	Tile	19	Exposure Settings		A	428	G	206	T	206	C	428
17-03-17 21:15:43.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27903, sync = True, waitForSettling = True)
17-03-17 21:15:43.648 -07 000000610 INF: Z Motor: Moving to -0.127732 mm, started at -0.134566 mm, distance = 6.83 um
17-03-17 21:15:43.648 -07 000000610 INF: FPGA: Xmit ZDACW 27903\n [Z Motor]
17-03-17 21:15:43.648 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:15:43.658 -07 000000610 INF: FPGA: 'ZDACW 27903' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:15:43.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:15:43.658 -07 000000382 INF: FPGA: Recv ZDACR 27903
17-03-17 21:15:43.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:43.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:15:43.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:43.818 -07 000000547 INF: FPGA: Recv ZSGSRD 29170
17-03-17 21:15:43.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:43.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:43.828 -07 000000458 INF: FPGA: Recv ZSGSRD 29169
17-03-17 21:15:43.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:43.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:43.838 -07 000000547 INF: FPGA: Recv ZSGSRD 29180
17-03-17 21:15:43.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:43.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:43.848 -07 000000424 INF: FPGA: Recv ZSGSRD 29176
17-03-17 21:15:43.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:43.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:43.858 -07 000000576 INF: FPGA: Recv ZSGSRD 29172
17-03-17 21:15:43.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:43.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:43.868 -07 000000424 INF: FPGA: Recv ZSGSRD 29169
17-03-17 21:15:43.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:43.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:43.878 -07 000000547 INF: FPGA: Recv ZSGSRD 29175
17-03-17 21:15:43.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:43.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:43.888 -07 000000475 INF: FPGA: Recv ZSGSRD 29172
17-03-17 21:15:43.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:43.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:43.898 -07 000000480 INF: FPGA: Recv ZSGSRD 29172
17-03-17 21:15:43.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:43.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:15:43.908 -07 000000626 INF: FPGA: Recv ZSGSRD 29165
17-03-17 21:15:43.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:43.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:15:43.918 -07 000000424 INF: FPGA: Recv ZPIEZORD 24883
17-03-17 21:15:43.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:43.928 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.258 V. Piezo Error = -9.4 V.
17-03-17 21:15:43.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29172 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29172 (-127.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29165 (-126.9 uncal um), Max = 29180 (-127.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:15:43.928 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29172, posNoise = 8, negNoise = 7
17-03-17 21:15:43.928 -07 000000610 INF: Z Motor: After move to -0.127732, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:15:43.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:15:43.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:15:43.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:15:43.928 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:15:43.928 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:15:43.928 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:15:43.928 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:15:43.928 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:15:43.928 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:15:43.928 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:15:43.928 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:15:43.928 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:15:43.928 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:15:43.938 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:15:43.938 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:15:43.938 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:15:43.938 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:15:43.938 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:15:43.938 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:15:43.948 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:15:43.948 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:15:43.948 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 428 428 206 206 28079 150\n [Camera]
17-03-17 21:15:44.118 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.028963,
17-03-17 21:15:44.158 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 21:15:44.578 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 620
17-03-17 21:15:44.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 620
17-03-17 21:15:44.578 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:44.578 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 620
17-03-17 21:15:44.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 620
17-03-17 21:15:44.578 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:44.578 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 21:15:44.578 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:44.578 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:44.578 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) start.
17-03-17 21:15:44.768 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28079 813
17-03-17 21:15:44.918 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 963
17-03-17 21:15:44.968 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2373830416, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 21:15:44.968 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:15:44.968 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:44.968 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:15:44.968 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:15:44.968 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:44.968 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:15:44.968 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:15:44.968 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:15:44.978 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:15:45.128 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1169
17-03-17 21:15:45.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1169
17-03-17 21:15:45.128 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:15:45.238 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1169
17-03-17 21:15:45.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1169
17-03-17 21:15:45.238 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:15:45.238 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:15:45.238 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 21:15:45.248 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:15:45.248 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 21:15:45.318 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1361
17-03-17 21:15:45.318 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:15:45.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 428 428 206 206 28079 150' command took 2 ms to send, 1364 ms to get response, and 1370 ms overall
17-03-17 21:15:45.638 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 21:15:45.638 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:15:45.638 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:45.638 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 21:15:45.638 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:15:45.638 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:15:45.638 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:45.638 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:15:45.638 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-17 21:15:45.638 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:15:45.648 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 21:15:45.688 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 21:15:45.688 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:15:45.728 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-17 21:15:45.738 -07 000000610 INF: Enabling Skipping AutoFocus in the next 4 cycles.
17-03-17 21:15:45.738 -07 000000610 INF: Imaging Cycle 48: ScanTilesCommand Cycle 48 time end. Duration was 157737 ms.
17-03-17 21:15:45.738 -07 000000610 INF: =================== Cycle #48 ===================
17-03-17 21:15:45.738 -07 000000610 INF: ===================  ===================
17-03-17 21:15:45.748 -07 000000458 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:15:45.748 -07 000000547 INF: FPGA: Recv EXLED1ADCR 24
17-03-17 21:15:45.758 -07 000000458 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:45.758 -07 000000458 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-17 21:15:45.758 -07 000000458 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 48, FrontChillerTemperature: 4.028963, FrontChillerHeatSinkTemperature: 0.286646, AmbientTemperature: 19.04122, FlowCellCompartmentTemperature: 21.99836, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.85798, GreenLEDSensorTemperature: 26.2821, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-17 21:15:45.778 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.