17-03-17 21:15:45.838 -07 000000610 INF: =================== Cycle #49 ===================
17-03-17 21:15:45.838 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 21:15:45.838 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8315 mm, delta = 0.5490 mm
17-03-17 21:15:45.838 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:45.848 -07 000000424 INF: FPGA: Recv YRDPOS 153256
17-03-17 21:15:45.848 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:15:45.848 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:45.848 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 21:15:45.848 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 21:15:45.848 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 21:15:45.968 -07 000000480 INF: FPGA: Recv YMVTO 154378 874
17-03-17 21:15:45.968 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 114 ms to get response, and 119 ms overall
17-03-17 21:15:45.968 -07 000000610 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm)
17-03-17 21:15:45.968 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 874 steps (0.546 mm). Slippage = -0.002 mm (0.00%).
17-03-17 21:15:45.968 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 119 ms, distance = 0.549 mm, average velocity = 4.614 mm/sec
17-03-17 21:15:46.858 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:15:46.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=724, R2=742, Total=1466. Warn if over 250 bubbles per interval.
17-03-17 21:15:48.968 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:15:48.968 -07 000000431 INF: FPGA: Recv YRDPOS 154381
17-03-17 21:15:48.978 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:15:48.978 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:15:48.988 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:15:48.988 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 21:15:48.988 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3155 ms
17-03-17 21:15:48.998 -07 000000610 INF: =================== Cycle #49, Flow Cell Temp 60° ===================
17-03-17 21:15:48.998 -07 000000610 INF: =================== Cycle #49, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 21:15:48.998 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 21:15:48.998 -07 000000476 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:15:49.008 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:15:49.008 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:15:49.008 -07 000000627 INF: FPGA: Recv TEC2EN 
17-03-17 21:15:49.018 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:15:49.018 -07 000000610 INF: =================== Cycle #49, Flow Cell Temp 60° ===================
17-03-17 21:15:49.018 -07 000000610 INF: =================== Cycle #49 ===================
17-03-17 21:15:49.018 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:15:49.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:15:49.048 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:15:49.048 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 21:15:49.048 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:15:49.348 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:15:49.368 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:15:49.368 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:15:49.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:15:49.438 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:15:49.438 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:15:49.488 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.009895,
17-03-17 21:15:49.538 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3) ===================
17-03-17 21:15:49.538 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:15:49.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:15:49.578 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:15:49.578 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:15:49.578 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:15:49.708 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:15:49.748 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:15:51.858 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 21:15:51.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=725, R2=743, Total=1468. Warn if over 250 bubbles per interval.
17-03-17 21:15:52.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:15:52.908 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:15:53.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:15:53.358 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:15:53.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:15:53.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:15:53.808 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:15:53.808 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3) ===================
17-03-17 21:15:53.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:15:53.968 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:15:53.968 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:15:54.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:15:54.128 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:15:54.128 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:15:54.128 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:15:54.258 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:15:54.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:15:54.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:15:54.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:15:54.748 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:15:54.748 -07 000000610 INF: =================== Cycle #49 ===================
17-03-17 21:15:54.858 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.997626,
17-03-17 21:15:55.968 -07 000000610 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:15:55.968 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 21:15:55.968 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:15:55.988 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:15:55.988 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 21:15:55.988 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 21:15:56.118 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:15:56.138 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 21:15:56.138 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 21:15:56.188 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:15:56.208 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:15:56.208 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:15:56.308 -07 000000610 INF: =================== Cycle #49, Pumping Reagent CMS (4) ===================
17-03-17 21:15:56.308 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:15:56.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:15:56.338 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:15:56.338 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:15:56.338 -07 000000610 INF: =================== Cycle #49, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 21:15:56.468 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:15:56.508 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:15:56.858 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 5
17-03-17 21:15:56.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=5, R2=6, Total=11. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=730, R2=749, Total=1479. Warn if over 250 bubbles per interval.
17-03-17 21:15:57.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:15:57.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:15:58.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:15:58.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:15:58.428 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:15:58.428 -07 000000610 INF: =================== Cycle #49, Pumping Reagent CMS (4) ===================
17-03-17 21:15:58.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:15:58.588 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:15:58.588 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:15:58.718 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:15:58.748 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:15:58.748 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:15:58.748 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:15:58.878 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:15:58.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:15:59.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:15:59.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:15:59.368 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:15:59.368 -07 000000610 INF: =================== Cycle #49 ===================
17-03-17 21:16:00.228 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.004458,
17-03-17 21:16:00.588 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 21:16:00.588 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:16:00.588 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:16:00.608 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 21:16:00.608 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 21:16:00.608 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 21:16:00.758 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:16:00.778 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 21:16:00.778 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 21:16:00.828 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:16:00.848 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:16:00.848 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:16:00.948 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3) ===================
17-03-17 21:16:00.948 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:16:00.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:16:00.978 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:16:00.978 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:16:00.978 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:16:01.108 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:16:01.148 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:16:01.858 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 7
17-03-17 21:16:01.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=7, R2=7, Total=14. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=737, R2=756, Total=1493. Warn if over 250 bubbles per interval.
17-03-17 21:16:02.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:16:02.048 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:16:02.048 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:16:02.048 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3) ===================
17-03-17 21:16:02.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:16:02.208 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:16:02.208 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:16:02.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:16:02.368 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:16:02.368 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:16:02.368 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:16:02.498 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:16:02.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:16:02.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:16:02.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:16:02.988 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:16:02.988 -07 000000610 INF: =================== Cycle #49 ===================
17-03-17 21:16:02.988 -07 000000547 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:16:02.988 -07 000000576 INF: WaitCommand(10000) start
17-03-17 21:16:02.988 -07 000000547 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:16:04.208 -07 000000547 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:16:04.208 -07 000000547 INF: LanePump: Xmit /1?\r
17-03-17 21:16:04.238 -07 000000547 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:16:04.238 -07 000000547 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:16:04.368 -07 000000547 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:16:04.408 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:16:05.598 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.981281,
17-03-17 21:16:05.938 -07 000000547 INF: LanePump: Xmit /1Q\r
17-03-17 21:16:05.968 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:16:06.388 -07 000000547 INF: LanePump: Xmit /1Q\r
17-03-17 21:16:06.418 -07 000000547 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:16:06.418 -07 000000547 INF: LanePump: Waited 2011 ms for pump motion to complete
17-03-17 21:16:06.418 -07 000000547 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:16:06.418 -07 000000547 INF: ===================  ===================
17-03-17 21:16:06.858 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 21:16:06.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=737, R2=757, Total=1494. Warn if over 250 bubbles per interval.
17-03-17 21:16:10.968 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.98264,
17-03-17 21:16:11.868 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:16:11.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=737, R2=757, Total=1494. Warn if over 250 bubbles per interval.
17-03-17 21:16:12.998 -07 000000576 INF: WaitCommand(10000) end
17-03-17 21:16:12.998 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3) ===================
17-03-17 21:16:12.998 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 21:16:12.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:16:13.028 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:16:13.028 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:16:13.028 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:16:13.158 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 21:16:13.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:16:16.338 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.974486,
17-03-17 21:16:16.858 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:16:16.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=737, R2=757, Total=1494. Warn if over 250 bubbles per interval.
17-03-17 21:16:19.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:16:19.358 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:16:19.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:16:19.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:16:20.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:16:20.258 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:16:20.678 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:16:20.708 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:16:21.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:16:21.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:16:21.158 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 21:16:21.158 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3) ===================
17-03-17 21:16:21.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:16:21.318 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:16:21.318 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:16:21.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:16:21.478 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:16:21.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:16:21.478 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:16:21.608 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:16:21.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:16:21.708 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.979922,
17-03-17 21:16:21.858 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:16:21.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=737, R2=757, Total=1494. Warn if over 250 bubbles per interval.
17-03-17 21:16:22.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:16:22.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:16:22.098 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:16:22.098 -07 000000610 INF: =================== Cycle #49 ===================
17-03-17 21:16:23.318 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:16:23.318 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 21:16:23.318 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:16:23.338 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:16:23.338 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 21:16:23.338 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 21:16:23.548 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:16:23.568 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 21:16:23.568 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 21:16:23.618 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:16:23.638 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:16:23.638 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:16:23.738 -07 000000610 INF: =================== Cycle #49, Pumping Reagent IMT (1) ===================
17-03-17 21:16:23.738 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:16:23.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:16:23.778 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 21:16:23.778 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 21:16:23.778 -07 000000610 INF: =================== Cycle #49, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 21:16:23.908 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:16:23.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:16:25.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:16:25.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:16:25.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:16:25.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:16:25.868 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 21:16:25.868 -07 000000610 INF: =================== Cycle #49, Pumping Reagent IMT (1) ===================
17-03-17 21:16:25.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:16:26.028 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:16:26.028 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:16:26.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:16:26.188 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:16:26.188 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:16:26.188 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:16:26.318 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:16:26.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:16:26.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:16:26.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:16:26.808 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:16:26.808 -07 000000610 INF: =================== Cycle #49 ===================
17-03-17 21:16:26.858 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:16:26.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=737, R2=757, Total=1494. Warn if over 250 bubbles per interval.
17-03-17 21:16:27.078 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.989471,
17-03-17 21:16:28.028 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:16:28.028 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:16:28.028 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:16:28.048 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 21:16:28.048 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 21:16:28.048 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:16:28.278 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:16:28.298 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 21:16:28.298 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 21:16:28.348 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:16:28.368 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:16:28.368 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:16:28.468 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3) ===================
17-03-17 21:16:28.468 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:16:28.468 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:16:28.498 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 21:16:28.498 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 21:16:28.498 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:16:28.628 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:16:28.668 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:16:29.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:16:29.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:16:29.568 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:16:29.568 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3) ===================
17-03-17 21:16:29.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:16:29.728 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:16:29.728 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:16:29.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:16:29.898 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:16:29.898 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:16:29.898 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:16:30.028 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:16:30.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:16:30.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:16:30.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:16:30.518 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:16:30.518 -07 000000610 INF: =================== Cycle #49 ===================
17-03-17 21:16:30.518 -07 000000610 INF: =================== Cycle #49, Flow Cell Temp 65° ===================
17-03-17 21:16:30.518 -07 000000610 INF: =================== Cycle #49, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 21:16:30.518 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 21:16:30.518 -07 000000480 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:16:30.528 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:16:30.528 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:16:30.528 -07 000000415 INF: FPGA: Recv TEC2EN 
17-03-17 21:16:30.538 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:16:30.538 -07 000000610 INF: =================== Cycle #49, Flow Cell Temp 65° ===================
17-03-17 21:16:30.538 -07 000000610 INF: =================== Cycle #49 ===================
17-03-17 21:16:30.538 -07 000000610 INF: WaitCommand(30000) start
17-03-17 21:16:31.858 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 21:16:31.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=757, Total=1495. Warn if over 250 bubbles per interval.
17-03-17 21:16:32.448 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.014009,
17-03-17 21:16:36.858 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 21:16:36.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:16:37.818 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.023489,
17-03-17 21:16:41.858 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:16:41.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:16:43.188 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.997626,
17-03-17 21:16:46.858 -07 000000476 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:16:46.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:16:48.568 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.989471,
17-03-17 21:16:51.858 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:16:51.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:16:53.928 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.000345,
17-03-17 21:16:56.858 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:16:56.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:16:59.298 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.001704,
17-03-17 21:17:00.548 -07 000000610 INF: WaitCommand(30000) end
17-03-17 21:17:00.548 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3) ===================
17-03-17 21:17:00.548 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 21:17:00.648 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:17:00.678 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 21:17:00.678 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 21:17:00.678 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:17:00.808 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 21:17:00.848 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:17:01.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:17:01.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:17:01.418 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 21:17:01.418 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3) ===================
17-03-17 21:17:01.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:17:01.578 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:17:01.578 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:17:01.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:17:01.738 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:17:01.738 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:17:01.738 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:17:01.858 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:17:01.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:17:01.868 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:17:01.898 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:17:02.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:17:02.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:17:02.358 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:17:02.358 -07 000000610 INF: =================== Cycle #49 ===================
17-03-17 21:17:02.358 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:17:02.358 -07 000000626 INF: WaitCommand(30000) start
17-03-17 21:17:02.358 -07 000000501 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:17:03.578 -07 000000501 INF: AsyncDelayTimer waited 1215ms
17-03-17 21:17:03.578 -07 000000501 INF: LanePump: Xmit /1?\r
17-03-17 21:17:03.608 -07 000000501 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 21:17:03.608 -07 000000501 INF: LanePump: Current Position of Pump is: 1920
17-03-17 21:17:03.738 -07 000000501 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:17:03.778 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:17:04.668 -07 000000476 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.989471,
17-03-17 21:17:06.118 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-17 21:17:06.148 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:17:06.568 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-17 21:17:06.598 -07 000000501 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:17:06.598 -07 000000501 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 21:17:06.598 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:17:06.598 -07 000000501 INF: ===================  ===================
17-03-17 21:17:06.858 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:17:06.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:17:10.038 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.005817,
17-03-17 21:17:11.858 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:17:11.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:17:15.408 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.99219,
17-03-17 21:17:16.858 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:17:16.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:17:20.778 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.023489,
17-03-17 21:17:21.858 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:17:21.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:17:26.148 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.999021,
17-03-17 21:17:26.858 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:17:26.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:17:31.518 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.971733,
17-03-17 21:17:31.858 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:17:31.858 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:17:32.368 -07 000000626 INF: WaitCommand(30000) end
17-03-17 21:17:32.368 -07 000000610 INF: =================== Cycle #49, Flow Cell Temp 22° ===================
17-03-17 21:17:32.368 -07 000000610 INF: =================== Cycle #49, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 21:17:32.368 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 21:17:32.378 -07 000000429 INF: FPGA: Recv TEC2TEMP 
17-03-17 21:17:32.378 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:17:32.378 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 21:17:32.378 -07 000000627 INF: FPGA: Recv TEC2EN 
17-03-17 21:17:32.388 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:17:32.388 -07 000000610 INF: =================== Cycle #49, Flow Cell Temp 22° ===================
17-03-17 21:17:32.388 -07 000000610 INF: =================== Cycle #49 ===================
17-03-17 21:17:32.388 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3) ===================
17-03-17 21:17:32.388 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 21:17:32.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:17:32.418 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 21:17:32.418 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 21:17:32.418 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:17:32.548 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 21:17:32.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:17:35.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:17:35.748 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:17:36.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:17:36.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:17:36.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:17:36.648 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:17:36.648 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 21:17:36.648 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3) ===================
17-03-17 21:17:36.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:17:36.808 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:17:36.808 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:17:36.858 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:17:36.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:17:36.898 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.014009,
17-03-17 21:17:36.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:17:36.968 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:17:36.968 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:17:36.968 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:17:37.098 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:17:37.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:17:37.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:17:37.588 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:17:37.588 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 21:17:37.588 -07 000000610 INF: =================== Cycle #49 ===================
17-03-17 21:17:38.808 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:17:38.808 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 21:17:38.808 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:17:38.828 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:17:38.828 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 21:17:38.828 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 21:17:38.978 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:17:38.998 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:17:38.998 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:17:39.048 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:17:39.068 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:17:39.068 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:17:39.168 -07 000000610 INF: =================== Cycle #49, Pumping Reagent USM (2) ===================
17-03-17 21:17:39.168 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 21:17:39.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:17:39.198 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 21:17:39.198 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 21:17:39.198 -07 000000610 INF: =================== Cycle #49, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 21:17:39.328 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 21:17:39.368 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:17:40.808 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:17:40.838 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:17:41.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:17:41.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:17:41.288 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 21:17:41.288 -07 000000610 INF: =================== Cycle #49, Pumping Reagent USM (2) ===================
17-03-17 21:17:41.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:17:41.448 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:17:41.448 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:17:41.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:17:41.608 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:17:41.608 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:17:41.608 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:17:41.738 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:17:41.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:17:41.858 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:17:41.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:17:42.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:17:42.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:17:42.228 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:17:42.228 -07 000000610 INF: =================== Cycle #49 ===================
17-03-17 21:17:42.258 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.001704,
17-03-17 21:17:43.448 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 21:17:43.448 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 21:17:43.448 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:17:43.468 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 21:17:43.468 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 21:17:43.468 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 21:17:43.618 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:17:43.638 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 21:17:43.638 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 21:17:43.688 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:17:43.708 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:17:43.708 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 21:17:43.808 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3) ===================
17-03-17 21:17:43.808 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 21:17:43.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:17:43.838 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 21:17:43.838 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 21:17:43.838 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 21:17:43.968 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 21:17:44.008 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:17:44.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:17:44.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:17:44.908 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 21:17:44.908 -07 000000610 INF: =================== Cycle #49, Pumping Reagent PR2 (3) ===================
17-03-17 21:17:45.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:17:45.068 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:17:45.068 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:17:45.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 21:17:45.228 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:17:45.228 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:17:45.228 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 21:17:45.358 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 21:17:45.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:17:45.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 21:17:45.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:17:45.848 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 21:17:45.848 -07 000000610 INF: =================== Cycle #49 ===================
17-03-17 21:17:45.848 -07 000000424 INF: WaitCommand(10000) start
17-03-17 21:17:45.848 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:17:45.848 -07 000000480 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 21:17:46.868 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:17:46.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:17:47.068 -07 000000480 INF: AsyncDelayTimer waited 1216ms
17-03-17 21:17:47.068 -07 000000480 INF: LanePump: Xmit /1?\r
17-03-17 21:17:47.098 -07 000000480 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 21:17:47.098 -07 000000480 INF: LanePump: Current Position of Pump is: 1110
17-03-17 21:17:47.228 -07 000000480 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 21:17:47.268 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:17:47.628 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.983999,
17-03-17 21:17:48.798 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-17 21:17:48.828 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 21:17:49.248 -07 000000480 INF: LanePump: Xmit /1Q\r
17-03-17 21:17:49.278 -07 000000480 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 21:17:49.278 -07 000000480 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 21:17:49.278 -07 000000480 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 21:17:49.278 -07 000000480 INF: ===================  ===================
17-03-17 21:17:51.868 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:17:51.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:17:52.998 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.983999,
17-03-17 21:17:55.858 -07 000000424 INF: WaitCommand(10000) end
17-03-17 21:17:55.858 -07 000000610 INF: =================== Cycle #49, Imaging ===================
17-03-17 21:17:55.858 -07 000000610 INF: Imaging Cycle 49: ScanTilesCommand Cycle 49 time start.
17-03-17 21:17:55.858 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 21:17:55.858 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:17:55.888 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 21:17:55.888 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 21:17:55.888 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 21:17:56.188 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 21:17:56.208 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 21:17:56.208 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 21:17:56.258 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 21:17:56.278 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 21:17:56.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:17:56.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:17:56.278 -07 000000475 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 21:17:56.278 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:17:56.278 -07 000000475 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 21:17:56.278 -07 000000512 INF: FPGA: Recv EXLED1ON 
17-03-17 21:17:56.288 -07 000000475 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:17:56.288 -07 000000475 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 21:17:56.288 -07 000000576 INF: FPGA: Recv EXLED1ADCR 23203
17-03-17 21:17:56.298 -07 000000475 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:17:56.298 -07 000000475 INF: RedLED: Using Red data: Photodiode ADC 23203 --> 7.5 mW (old method), or 205.6 mW (new method). Difference = 198.2 mW
17-03-17 21:17:56.298 -07 000000475 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 21:17:56.298 -07 000000431 INF: FPGA: Recv EXLED1OFF 
17-03-17 21:17:56.308 -07 000000475 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:17:56.308 -07 000000475 INF: RedLED: LED was on for 20 ms
17-03-17 21:17:56.308 -07 000000475 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 24 ms.
17-03-17 21:17:56.308 -07 000000475 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 21:17:56.308 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:17:56.308 -07 000000475 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 21:17:56.308 -07 000000476 INF: FPGA: Recv EXLED2ON 
17-03-17 21:17:56.318 -07 000000475 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:17:56.318 -07 000000475 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:17:56.318 -07 000000501 INF: FPGA: Recv EXLED1ADCR 2100
17-03-17 21:17:56.328 -07 000000475 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:17:56.328 -07 000000475 INF: GreenLED: Using Green data: Photodiode ADC 2100 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.5 mW
17-03-17 21:17:56.328 -07 000000475 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 21:17:56.328 -07 000000429 INF: FPGA: Recv EXLED2OFF 
17-03-17 21:17:56.338 -07 000000475 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:17:56.338 -07 000000475 INF: GreenLED: LED was on for 19 ms
17-03-17 21:17:56.338 -07 000000475 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 26 ms.
17-03-17 21:17:56.338 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:17:56.338 -07 000000501 INF: FPGA: Recv EMCUR 
17-03-17 21:17:56.348 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:17:56.348 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 21:17:56.848 -07 000000424 INF: FPGA: Recv EMOUT
17-03-17 21:17:56.848 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 21:17:56.848 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 21:17:56.848 -07 000000438 INF: FPGA: Recv EMCUR 
17-03-17 21:17:56.858 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:17:56.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:17:56.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38134765625, Z-Position -0.127730468610586. ------
17-03-17 21:17:56.858 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:17:56.858 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17959 mm
17-03-17 21:17:56.858 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:17:56.868 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:17:56.868 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 39231, sync = True, waitForSettling = False)
17-03-17 21:17:56.868 -07 000000576 INF: Z Motor: Moving to -0.179588 mm, started at -0.127730 mm, distance = -51.86 um
17-03-17 21:17:56.868 -07 000000576 INF: FPGA: Xmit ZDACW 39231\n [Z Motor]
17-03-17 21:17:56.868 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:17:56.868 -07 000000475 INF: Y Motor: Moving to 59.9126 mm, started at 75.3813 mm, delta = -15.4687 mm
17-03-17 21:17:56.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:17:56.868 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:17:56.868 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 21:17:56.868 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:17:56.878 -07 000000576 INF: FPGA: 'ZDACW 39231' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:17:56.878 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:17:56.878 -07 000000480 INF: FPGA: Recv ZDACR 39231
17-03-17 21:17:56.888 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:17:56.888 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:17:56.888 -07 000000576 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 21:17:56.888 -07 000000569 INF: FPGA: Recv YRDPOS 154382
17-03-17 21:17:56.898 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:17:56.898 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:17:56.898 -07 000000475 INF: Y Motor: Encoder = 154382 = motor step 120610.9 = 75.3818 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:17:56.898 -07 000000475 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 21:17:56.898 -07 000000475 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:17:56.908 -07 000000475 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:17:57.098 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:17:57.098 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 232 ms overall
17-03-17 21:17:58.368 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.011254,
17-03-17 21:17:58.588 -07 000000012 INF: FPGA: Recv YMVTO 122703 24778
17-03-17 21:17:58.588 -07 000000475 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1692 ms overall
17-03-17 21:17:58.588 -07 000000475 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:17:58.588 -07 000000475 INF: Y Motor: To move from 75.382 to 59.913 (-15.469 mm) should take 24751 steps, but required 24778 steps (15.486 mm). Slippage = 0.017 mm (0.00%).
17-03-17 21:17:58.588 -07 000000475 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1692 ms, distance = 15.469 mm, average velocity = 9.142 mm/sec
17-03-17 21:18:01.438 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:01.438 -07 000000476 INF: FPGA: Recv YRDPOS 122696
17-03-17 21:18:01.448 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:01.448 -07 000000475 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:01.468 -07 000000475 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:18:01.468 -07 000000475 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-17 21:18:01.468 -07 000000475 INF: Y Motor: Moved to 59.9102 after 4603 ms
17-03-17 21:18:01.468 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179588 mm (DAC = 39231)
17-03-17 21:18:01.468 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:01.478 -07 000000429 INF: FPGA: Recv ZSGSRD 37245
17-03-17 21:18:01.478 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:18:01.478 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:01.478 -07 000000415 INF: FPGA: Recv ZSGSRD 37249
17-03-17 21:18:01.488 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:01.488 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:01.488 -07 000000459 INF: FPGA: Recv ZSGSRD 37242
17-03-17 21:18:01.498 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:01.498 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:01.498 -07 000000626 INF: FPGA: Recv ZSGSRD 37256
17-03-17 21:18:01.508 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:01.508 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:01.508 -07 000000012 INF: FPGA: Recv ZSGSRD 37245
17-03-17 21:18:01.518 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:01.518 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:01.518 -07 000000547 INF: FPGA: Recv ZSGSRD 37243
17-03-17 21:18:01.528 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:01.528 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:01.528 -07 000000415 INF: FPGA: Recv ZSGSRD 37249
17-03-17 21:18:01.538 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:01.538 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:01.538 -07 000000476 INF: FPGA: Recv ZSGSRD 37241
17-03-17 21:18:01.548 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:01.548 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:01.548 -07 000000458 INF: FPGA: Recv ZSGSRD 37247
17-03-17 21:18:01.558 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:01.558 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:01.558 -07 000000382 INF: FPGA: Recv ZSGSRD 37239
17-03-17 21:18:01.568 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:01.568 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:01.568 -07 000000627 INF: FPGA: Recv ZPIEZORD 33767
17-03-17 21:18:01.578 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:01.578 -07 000000608 INF: Z Motor: Piezo is near 52.1 V (nominally 0 to 100 V), expect near 59.9 V, since DAC is at 5.986 V. Piezo Error = -7.7 V.
17-03-17 21:18:01.578 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.6 um, Read 10 ADC samples: Avg = 37246 (-178.7 uncal um), Error = 0.9 uncal um, Median = 37245 (-178.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 37239 (-178.7 uncal um), Max = 37256 (-178.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:18:01.578 -07 000000608 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37246, posNoise = 10, negNoise = 7
17-03-17 21:18:01.578 -07 000000608 INF: Z Motor: After move to -0.179588, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:01.578 -07 000000608 INF: Z Motor: Settle wait time = 4607 ms, measure time = 103 ms (allowed 150 ms), total time = 4710 ms
17-03-17 21:18:01.578 -07 000000608 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:18:01.628 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4762 ms
17-03-17 21:18:01.628 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:18:01.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:01.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:01.628 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:01.628 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:01.628 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:18:01.628 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:01.628 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:01.628 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:18:01.658 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 21:18:01.658 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:18:01.658 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 21:18:01.658 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:18:01.678 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 21:18:01.678 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 21:18:01.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:18:01.718 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:18:01.868 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:18:01.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:18:01.918 -07 000000476 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:18:01.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:18:01.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:18:01.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) start.
17-03-17 21:18:01.958 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:18:01.958 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 21:18:01.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:18:02.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 673549296, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:18:02.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:02.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:18:02.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:18:02.158 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:02.158 -07 000000547 INF: Image SNR check: start
17-03-17 21:18:02.158 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:02.168 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:18:02.168 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:18:02.168 -07 000000547 INF: Image SNR check: pass  [peak (Max-Min)=62.60]
17-03-17 21:18:02.168 -07 000000547 INF: Autofocus start
17-03-17 21:18:02.168 -07 000000547 INF: MeasureProfile start
17-03-17 21:18:02.188 -07 000000547 INF: MeasureProfile done
17-03-17 21:18:02.188 -07 000000547 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:18:02.188 -07 000000547 INF: Autofocus finished
17-03-17 21:18:02.368 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:18:02.368 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:18:02.368 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.179599557443164. ----------
17-03-17 21:18:02.368 -07 000000610 INF: Cycle	49	Tile	1	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:18:02.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37746, sync = True, waitForSettling = True)
17-03-17 21:18:02.378 -07 000000610 INF: Z Motor: Moving to -0.172790 mm, started at -0.179600 mm, distance = 6.81 um
17-03-17 21:18:02.378 -07 000000610 INF: FPGA: Xmit ZDACW 37746\n [Z Motor]
17-03-17 21:18:02.378 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:18:02.388 -07 000000610 INF: FPGA: 'ZDACW 37746' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:02.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:02.388 -07 000000501 INF: FPGA: Recv ZDACR 37746
17-03-17 21:18:02.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:02.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:18:02.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:02.548 -07 000000431 INF: FPGA: Recv ZSGSRD 36191
17-03-17 21:18:02.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:02.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:02.558 -07 000000627 INF: FPGA: Recv ZSGSRD 36190
17-03-17 21:18:02.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:02.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:02.568 -07 000000569 INF: FPGA: Recv ZSGSRD 36186
17-03-17 21:18:02.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:18:02.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:02.578 -07 000000576 INF: FPGA: Recv ZSGSRD 36184
17-03-17 21:18:02.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:02.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:02.588 -07 000000626 INF: FPGA: Recv ZSGSRD 36185
17-03-17 21:18:02.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:02.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:02.598 -07 000000608 INF: FPGA: Recv ZSGSRD 36188
17-03-17 21:18:02.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:02.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:02.608 -07 000000476 INF: FPGA: Recv ZSGSRD 36188
17-03-17 21:18:02.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:02.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:02.618 -07 000000459 INF: FPGA: Recv ZSGSRD 36190
17-03-17 21:18:02.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:02.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:02.628 -07 000000431 INF: FPGA: Recv ZSGSRD 36192
17-03-17 21:18:02.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:02.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:02.638 -07 000000626 INF: FPGA: Recv ZSGSRD 36191
17-03-17 21:18:02.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:02.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:02.648 -07 000000458 INF: FPGA: Recv ZPIEZORD 32335
17-03-17 21:18:02.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:02.658 -07 000000610 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.760 V. Piezo Error = -8.5 V.
17-03-17 21:18:02.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36188 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36189 (-171.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36184 (-171.9 uncal um), Max = 36192 (-171.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:18:02.658 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36188, posNoise = 4, negNoise = 4
17-03-17 21:18:02.658 -07 000000610 INF: Z Motor: After move to -0.172790, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:02.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:18:02.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:02.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:02.658 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:02.658 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:18:02.658 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:02.658 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:18:02.658 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:18:02.658 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:02.658 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:02.658 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:18:02.658 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:18:02.658 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:18:02.658 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:02.658 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:18:02.678 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 21:18:02.678 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:18:02.678 -07 000000626 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 21:18:02.678 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:18:02.688 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:18:02.688 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:18:02.698 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:18:02.698 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 38 ms.
17-03-17 21:18:02.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37923 150\n [Camera]
17-03-17 21:18:02.898 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 21:18:03.328 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:18:03.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:18:03.328 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:03.328 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:03.328 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) start.
17-03-17 21:18:03.328 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:18:03.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:18:03.328 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:03.438 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:03.438 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:18:03.518 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37923 814
17-03-17 21:18:03.668 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:18:03.718 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2338408152, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 21:18:03.718 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:18:03.718 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:03.718 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:18:03.718 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:18:03.758 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.977204,
17-03-17 21:18:03.828 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:18:03.828 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:18:03.828 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:03.828 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:18:03.838 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 501 ms.
17-03-17 21:18:03.878 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:18:03.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:18:03.878 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:03.878 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:18:03.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:18:03.878 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:03.888 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:03.888 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-17 21:18:03.888 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:03.888 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:18:04.068 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:18:04.068 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:18:04.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37923 150' command took 2 ms to send, 1366 ms to get response, and 1370 ms overall
17-03-17 21:18:04.068 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:18:04.068 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.17280274099718. ------
17-03-17 21:18:04.078 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17918 mm
17-03-17 21:18:04.078 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:18:04.078 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:18:04.078 -07 000000512 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-17 21:18:04.078 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 39142, sync = True, waitForSettling = False)
17-03-17 21:18:04.078 -07 000000415 INF: Z Motor: Moving to -0.179181 mm, started at -0.172803 mm, distance = -6.38 um
17-03-17 21:18:04.088 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:04.088 -07 000000431 INF: FPGA: Recv YRDPOS 122696
17-03-17 21:18:04.098 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:04.098 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:18:04.098 -07 000000512 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:04.098 -07 000000512 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:18:04.098 -07 000000512 INF: Y Motor: Moving 1332 steps2
17-03-17 21:18:04.098 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:04.108 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:18:04.108 -07 000000415 INF: FPGA: Xmit ZDACW 39142\n [Z Motor]
17-03-17 21:18:04.108 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:18:04.118 -07 000000415 INF: FPGA: 'ZDACW 39142' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 21:18:04.128 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:18:04.138 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:18:04.148 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:04.148 -07 000000547 INF: FPGA: Recv ZDACR 39142
17-03-17 21:18:04.158 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 21:18:04.158 -07 000000415 INF: Z Motor: MoveAbsStepped took 72 ms (did NOT wait for settling yet))
17-03-17 21:18:04.268 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 21:18:04.268 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:18:04.268 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:04.278 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 21:18:04.278 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:04.278 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:18:04.278 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:04.278 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:04.278 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:18:04.288 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:18:04.338 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:18:04.338 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 21:18:04.498 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 21:18:04.498 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-17 21:18:04.528 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:04.538 -07 000000547 INF: FPGA: Recv YRDPOS 124380
17-03-17 21:18:04.538 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:18:04.538 -07 000000512 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:04.538 -07 000000512 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 21:18:04.538 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.832 mm, average velocity = 2.045 mm/sec
17-03-17 21:18:05.488 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:05.488 -07 000000576 INF: FPGA: Recv YRDPOS 124380
17-03-17 21:18:05.498 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:05.498 -07 000000512 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:05.518 -07 000000512 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:18:05.518 -07 000000512 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:18:05.518 -07 000000512 INF: Y Motor: Moved to 60.7324 after 1437 ms (table move)
17-03-17 21:18:05.518 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179181 mm (DAC = 39142)
17-03-17 21:18:05.518 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:05.528 -07 000000415 INF: FPGA: Recv ZSGSRD 37188
17-03-17 21:18:05.528 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:18:05.528 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:05.528 -07 000000424 INF: FPGA: Recv ZSGSRD 37178
17-03-17 21:18:05.538 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:05.538 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:05.538 -07 000000458 INF: FPGA: Recv ZSGSRD 37180
17-03-17 21:18:05.548 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:05.548 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:05.548 -07 000000429 INF: FPGA: Recv ZSGSRD 37182
17-03-17 21:18:05.558 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:05.558 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:05.558 -07 000000382 INF: FPGA: Recv ZSGSRD 37184
17-03-17 21:18:05.568 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:05.568 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:05.568 -07 000000415 INF: FPGA: Recv ZSGSRD 37185
17-03-17 21:18:05.578 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:05.578 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:05.578 -07 000000012 INF: FPGA: Recv ZSGSRD 37181
17-03-17 21:18:05.588 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:05.588 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:05.588 -07 000000501 INF: FPGA: Recv ZSGSRD 37183
17-03-17 21:18:05.598 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:05.598 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:05.598 -07 000000476 INF: FPGA: Recv ZSGSRD 37181
17-03-17 21:18:05.608 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:05.608 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:05.608 -07 000000576 INF: FPGA: Recv ZSGSRD 37181
17-03-17 21:18:05.618 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:05.618 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:05.618 -07 000000626 INF: FPGA: Recv ZPIEZORD 33679
17-03-17 21:18:05.628 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:05.628 -07 000000475 INF: Z Motor: Piezo is near 51.9 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.973 V. Piezo Error = -7.8 V.
17-03-17 21:18:05.628 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.2 um, Read 10 ADC samples: Avg = 37182 (-178.3 uncal um), Error = 0.9 uncal um, Median = 37182 (-178.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37178 (-178.3 uncal um), Max = 37188 (-178.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:18:05.628 -07 000000475 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37182, posNoise = 6, negNoise = 4
17-03-17 21:18:05.628 -07 000000475 INF: Z Motor: After move to -0.179181, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:05.628 -07 000000475 INF: Z Motor: Settle wait time = 1440 ms, measure time = 104 ms (allowed 150 ms), total time = 1544 ms
17-03-17 21:18:05.628 -07 000000475 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:18:05.678 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 21:18:05.678 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:18:05.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:05.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:05.678 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:05.678 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:05.678 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:18:05.678 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:05.678 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:05.678 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:18:05.688 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:05.688 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:18:05.688 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:18:05.688 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:18:05.698 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:18:05.748 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 21:18:05.938 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 21:18:05.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 21:18:05.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:18:05.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2315455648, 0x0, 559484976) start.
17-03-17 21:18:05.978 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:18:05.978 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 21:18:05.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 21:18:06.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2315455648, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:18:06.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:06.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:18:06.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 132 ms.
17-03-17 21:18:06.178 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:06.178 -07 000000382 INF: Autofocus start
17-03-17 21:18:06.178 -07 000000382 INF: MeasureProfile start
17-03-17 21:18:06.178 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:06.188 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:18:06.188 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:18:06.188 -07 000000382 INF: MeasureProfile done
17-03-17 21:18:06.188 -07 000000382 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:18:06.188 -07 000000382 INF: Autofocus finished
17-03-17 21:18:06.388 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:18:06.388 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:18:06.388 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.179188407866091. ----------
17-03-17 21:18:06.388 -07 000000610 INF: Cycle	49	Tile	2	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:18:06.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37639, sync = True, waitForSettling = True)
17-03-17 21:18:06.398 -07 000000610 INF: Z Motor: Moving to -0.172300 mm, started at -0.179188 mm, distance = 6.89 um
17-03-17 21:18:06.398 -07 000000610 INF: FPGA: Xmit ZDACW 37639\n [Z Motor]
17-03-17 21:18:06.398 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:18:06.408 -07 000000610 INF: FPGA: 'ZDACW 37639' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:06.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:06.408 -07 000000438 INF: FPGA: Recv ZDACR 37639
17-03-17 21:18:06.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:06.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:18:06.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:06.568 -07 000000547 INF: FPGA: Recv ZSGSRD 36106
17-03-17 21:18:06.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:06.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:06.578 -07 000000458 INF: FPGA: Recv ZSGSRD 36114
17-03-17 21:18:06.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:06.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:06.588 -07 000000480 INF: FPGA: Recv ZSGSRD 36113
17-03-17 21:18:06.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:06.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:06.598 -07 000000512 INF: FPGA: Recv ZSGSRD 36105
17-03-17 21:18:06.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:06.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:06.608 -07 000000431 INF: FPGA: Recv ZSGSRD 36109
17-03-17 21:18:06.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:06.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:06.618 -07 000000501 INF: FPGA: Recv ZSGSRD 36114
17-03-17 21:18:06.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:06.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:06.628 -07 000000576 INF: FPGA: Recv ZSGSRD 36113
17-03-17 21:18:06.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:06.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:06.638 -07 000000438 INF: FPGA: Recv ZSGSRD 36112
17-03-17 21:18:06.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:06.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:06.648 -07 000000569 INF: FPGA: Recv ZSGSRD 36107
17-03-17 21:18:06.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:06.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:06.658 -07 000000012 INF: FPGA: Recv ZSGSRD 36115
17-03-17 21:18:06.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:06.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:06.668 -07 000000627 INF: FPGA: Recv ZPIEZORD 32230
17-03-17 21:18:06.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:06.678 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.743 V. Piezo Error = -8.6 V.
17-03-17 21:18:06.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36111 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36112 (-171.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36105 (-171.4 uncal um), Max = 36115 (-171.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:18:06.678 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36111, posNoise = 4, negNoise = 6
17-03-17 21:18:06.678 -07 000000610 INF: Z Motor: After move to -0.172300, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:06.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:18:06.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:06.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:06.678 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:06.678 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:06.678 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:18:06.678 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:18:06.678 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:18:06.678 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:06.678 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:18:06.678 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:18:06.678 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:06.678 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:18:06.688 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:18:06.688 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:18:06.688 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:18:06.688 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:18:06.698 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:18:06.698 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:18:06.698 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 21:18:06.698 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:18:06.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37815 150\n [Camera]
17-03-17 21:18:06.868 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:18:06.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:18:06.898 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:18:07.328 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:18:07.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:18:07.328 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:07.328 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:07.328 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:18:07.338 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:18:07.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:18:07.338 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:07.338 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:07.338 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:18:07.528 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37815 814
17-03-17 21:18:07.678 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:18:07.738 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 21:18:07.738 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:18:07.738 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:07.738 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 21:18:07.738 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:18:07.738 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:07.738 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:07.738 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 21:18:07.738 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:07.748 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:18:07.878 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:18:07.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:18:07.878 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:07.878 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:07.878 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:18:07.878 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:18:07.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:18:07.998 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:08.008 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:08.008 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 21:18:08.068 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:18:08.068 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:18:08.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37815 150' command took 2 ms to send, 1358 ms to get response, and 1370 ms overall
17-03-17 21:18:08.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:18:08.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.172308076662265. ------
17-03-17 21:18:08.078 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:08.078 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17854 mm
17-03-17 21:18:08.078 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:18:08.078 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:18:08.078 -07 000000012 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 21:18:08.078 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:08.078 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 39003, sync = True, waitForSettling = False)
17-03-17 21:18:08.078 -07 000000547 INF: Z Motor: Moving to -0.178544 mm, started at -0.172308 mm, distance = -6.24 um
17-03-17 21:18:08.088 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:18:08.088 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:08.088 -07 000000431 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:18:08.098 -07 000000547 INF: FPGA: Xmit ZDACW 39003\n [Z Motor]
17-03-17 21:18:08.098 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:18:08.098 -07 000000012 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:08.098 -07 000000012 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:18:08.098 -07 000000012 INF: Y Motor: Moving 1344 steps-21
17-03-17 21:18:08.098 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:18:08.108 -07 000000547 INF: FPGA: 'ZDACW 39003' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 21:18:08.108 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:18:08.118 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:18:08.128 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:08.128 -07 000000424 INF: FPGA: Recv ZDACR 39003
17-03-17 21:18:08.138 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:18:08.138 -07 000000547 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 21:18:08.278 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:18:08.278 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:18:08.278 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:08.288 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:18:08.288 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:18:08.308 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:18:08.308 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:18:08.398 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:18:08.408 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:18:08.408 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:08.408 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:18:08.408 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 21:18:08.488 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 21:18:08.488 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 21:18:08.528 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:08.528 -07 000000459 INF: FPGA: Recv YRDPOS 126081
17-03-17 21:18:08.538 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:18:08.538 -07 000000012 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:08.538 -07 000000012 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:18:08.538 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.143 mm/sec
17-03-17 21:18:09.118 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.008536,
17-03-17 21:18:09.488 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:09.488 -07 000000547 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:18:09.498 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:09.498 -07 000000012 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:09.518 -07 000000012 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:18:09.518 -07 000000012 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:18:09.518 -07 000000012 INF: Y Motor: Moved to 61.5635 after 1438 ms (table move)
17-03-17 21:18:09.518 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178544 mm (DAC = 39003)
17-03-17 21:18:09.538 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:09.538 -07 000000569 INF: FPGA: Recv ZSGSRD 37083
17-03-17 21:18:09.548 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 21:18:09.548 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:09.548 -07 000000458 INF: FPGA: Recv ZSGSRD 37083
17-03-17 21:18:09.558 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:09.558 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:09.558 -07 000000382 INF: FPGA: Recv ZSGSRD 37083
17-03-17 21:18:09.568 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:09.568 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:09.568 -07 000000459 INF: FPGA: Recv ZSGSRD 37089
17-03-17 21:18:09.578 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:09.578 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:09.578 -07 000000480 INF: FPGA: Recv ZSGSRD 37084
17-03-17 21:18:09.588 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:09.588 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:09.588 -07 000000431 INF: FPGA: Recv ZSGSRD 37087
17-03-17 21:18:09.598 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:18:09.598 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:09.598 -07 000000576 INF: FPGA: Recv ZSGSRD 37079
17-03-17 21:18:09.608 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:09.608 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:09.608 -07 000000429 INF: FPGA: Recv ZSGSRD 37080
17-03-17 21:18:09.618 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:09.618 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:09.618 -07 000000501 INF: FPGA: Recv ZSGSRD 37086
17-03-17 21:18:09.628 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:09.628 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:09.628 -07 000000475 INF: FPGA: Recv ZSGSRD 37085
17-03-17 21:18:09.638 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:09.638 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:09.638 -07 000000431 INF: FPGA: Recv ZPIEZORD 33527
17-03-17 21:18:09.648 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:09.648 -07 000000627 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.951 V. Piezo Error = -7.9 V.
17-03-17 21:18:09.648 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37084 (-177.7 uncal um), Error = 0.9 uncal um, Median = 37084 (-177.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37079 (-177.6 uncal um), Max = 37089 (-177.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:18:09.648 -07 000000627 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37084, posNoise = 5, negNoise = 5
17-03-17 21:18:09.648 -07 000000627 INF: Z Motor: After move to -0.178544, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:09.648 -07 000000627 INF: Z Motor: Settle wait time = 1440 ms, measure time = 121 ms (allowed 150 ms), total time = 1561 ms
17-03-17 21:18:09.648 -07 000000627 INF: Z Motor: Waiting extra 29 ms after reading position to reach expected total of 150 ms
17-03-17 21:18:09.678 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 21:18:09.678 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:18:09.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:09.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:09.678 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:09.678 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:18:09.678 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:09.678 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:09.678 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:09.678 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:18:09.678 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:09.688 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:18:09.698 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:18:09.698 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:18:09.698 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:18:09.748 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 21:18:09.948 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 21:18:09.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 21:18:09.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:18:09.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 21:18:09.978 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:18:09.978 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 21:18:09.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 21:18:10.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:18:10.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:10.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:18:10.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:18:10.178 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:10.178 -07 000000424 INF: Autofocus start
17-03-17 21:18:10.178 -07 000000424 INF: MeasureProfile start
17-03-17 21:18:10.178 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:10.188 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:18:10.188 -07 000000458 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:18:10.188 -07 000000424 INF: MeasureProfile done
17-03-17 21:18:10.188 -07 000000424 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:18:10.188 -07 000000424 INF: Autofocus finished
17-03-17 21:18:10.388 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:18:10.388 -07 000000458 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:18:10.388 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.178558835076198. ----------
17-03-17 21:18:10.388 -07 000000610 INF: Cycle	49	Tile	3	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:18:10.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37518, sync = True, waitForSettling = True)
17-03-17 21:18:10.398 -07 000000610 INF: Z Motor: Moving to -0.171746 mm, started at -0.178559 mm, distance = 6.81 um
17-03-17 21:18:10.398 -07 000000610 INF: FPGA: Xmit ZDACW 37518\n [Z Motor]
17-03-17 21:18:10.398 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:18:10.408 -07 000000610 INF: FPGA: 'ZDACW 37518' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:18:10.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:10.408 -07 000000438 INF: FPGA: Recv ZDACR 37518
17-03-17 21:18:10.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:10.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:18:10.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:10.568 -07 000000458 INF: FPGA: Recv ZSGSRD 36023
17-03-17 21:18:10.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:10.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:10.578 -07 000000480 INF: FPGA: Recv ZSGSRD 36028
17-03-17 21:18:10.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:10.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:10.588 -07 000000627 INF: FPGA: Recv ZSGSRD 36023
17-03-17 21:18:10.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:10.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:10.598 -07 000000512 INF: FPGA: Recv ZSGSRD 36021
17-03-17 21:18:10.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:10.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:10.608 -07 000000626 INF: FPGA: Recv ZSGSRD 36024
17-03-17 21:18:10.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:10.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:10.618 -07 000000012 INF: FPGA: Recv ZSGSRD 36027
17-03-17 21:18:10.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:10.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:10.628 -07 000000501 INF: FPGA: Recv ZSGSRD 36032
17-03-17 21:18:10.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:10.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:10.638 -07 000000459 INF: FPGA: Recv ZSGSRD 36022
17-03-17 21:18:10.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:10.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:10.648 -07 000000608 INF: FPGA: Recv ZSGSRD 36027
17-03-17 21:18:10.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:10.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:10.658 -07 000000547 INF: FPGA: Recv ZSGSRD 36027
17-03-17 21:18:10.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:10.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:10.668 -07 000000415 INF: FPGA: Recv ZPIEZORD 32130
17-03-17 21:18:10.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:10.678 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.725 V. Piezo Error = -8.6 V.
17-03-17 21:18:10.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36025 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36026 (-170.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36021 (-170.9 uncal um), Max = 36032 (-170.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:18:10.678 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36025, posNoise = 7, negNoise = 4
17-03-17 21:18:10.678 -07 000000610 INF: Z Motor: After move to -0.171746, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:10.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:18:10.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:10.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:10.678 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:10.678 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:10.678 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:18:10.678 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:18:10.678 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:18:10.678 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:10.678 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:10.678 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:18:10.678 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:18:10.678 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:18:10.688 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:10.688 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:18:10.688 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:18:10.688 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:18:10.698 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:18:10.698 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:18:10.698 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:18:10.698 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:18:10.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37695 150\n [Camera]
17-03-17 21:18:10.898 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:18:11.328 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:18:11.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:18:11.328 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:11.328 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:18:11.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:18:11.328 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:11.328 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:11.328 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:18:11.328 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:11.328 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2319860952, 0x0, 391868352) start.
17-03-17 21:18:11.518 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37695 814
17-03-17 21:18:11.668 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:18:11.708 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2319860952, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 21:18:11.708 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 21:18:11.708 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:11.708 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:18:11.708 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:18:11.708 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:11.708 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:11.708 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:18:11.708 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:11.718 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:18:11.868 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:18:11.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:18:11.878 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:18:11.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:18:11.878 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:11.878 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:18:11.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:18:11.878 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:11.988 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:11.988 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:18:11.998 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:11.998 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 21:18:12.068 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:18:12.068 -07 000000012 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:18:12.068 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37695 150' command took 2 ms to send, 1363 ms to get response, and 1370 ms overall
17-03-17 21:18:12.068 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:18:12.068 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.171755594418073. ------
17-03-17 21:18:12.068 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:12.068 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17805 mm
17-03-17 21:18:12.068 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:18:12.078 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:18:12.078 -07 000000547 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 21:18:12.078 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:12.078 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 38895, sync = True, waitForSettling = False)
17-03-17 21:18:12.078 -07 000000626 INF: Z Motor: Moving to -0.178050 mm, started at -0.171756 mm, distance = -6.29 um
17-03-17 21:18:12.078 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:12.078 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 21:18:12.078 -07 000000608 INF: FPGA: Recv YRDPOS 126082
17-03-17 21:18:12.088 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:18:12.088 -07 000000626 INF: FPGA: Xmit ZDACW 38895\n [Z Motor]
17-03-17 21:18:12.088 -07 000000547 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:12.088 -07 000000547 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:18:12.088 -07 000000547 INF: Y Motor: Moving 1343 steps-20
17-03-17 21:18:12.088 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:18:12.098 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:18:12.098 -07 000000626 INF: FPGA: 'ZDACW 38895' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:18:12.108 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:18:12.118 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:12.118 -07 000000012 INF: FPGA: Recv ZDACR 38895
17-03-17 21:18:12.128 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:18:12.128 -07 000000626 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 21:18:12.298 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:18:12.298 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 21:18:12.388 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 21:18:12.388 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:18:12.388 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:12.398 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 21:18:12.398 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 21:18:12.398 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:12.398 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:12.398 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:12.398 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 21:18:12.408 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 526 ms.
17-03-17 21:18:12.478 -07 000000012 INF: FPGA: Recv YMVTILE
17-03-17 21:18:12.488 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 369 ms to get response, and 399 ms overall
17-03-17 21:18:12.518 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:12.528 -07 000000501 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:18:12.528 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:18:12.528 -07 000000547 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:12.528 -07 000000547 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 21:18:12.528 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.839 mm, average velocity = 2.103 mm/sec
17-03-17 21:18:13.478 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:13.478 -07 000000475 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:18:13.488 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:13.488 -07 000000547 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:13.508 -07 000000547 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:18:13.508 -07 000000547 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:18:13.508 -07 000000547 INF: Y Motor: Moved to 62.3950 after 1432 ms (table move)
17-03-17 21:18:13.508 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178050 mm (DAC = 38895)
17-03-17 21:18:13.508 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:13.518 -07 000000480 INF: FPGA: Recv ZSGSRD 37003
17-03-17 21:18:13.518 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:18:13.518 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:13.518 -07 000000626 INF: FPGA: Recv ZSGSRD 37015
17-03-17 21:18:13.528 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:13.528 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:13.528 -07 000000569 INF: FPGA: Recv ZSGSRD 37011
17-03-17 21:18:13.538 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:13.538 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:13.538 -07 000000501 INF: FPGA: Recv ZSGSRD 37010
17-03-17 21:18:13.548 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:13.548 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:13.548 -07 000000429 INF: FPGA: Recv ZSGSRD 36995
17-03-17 21:18:13.558 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:13.558 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:13.558 -07 000000458 INF: FPGA: Recv ZSGSRD 37000
17-03-17 21:18:13.568 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:13.568 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:13.568 -07 000000382 INF: FPGA: Recv ZSGSRD 37010
17-03-17 21:18:13.578 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:13.578 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:13.578 -07 000000475 INF: FPGA: Recv ZSGSRD 37007
17-03-17 21:18:13.588 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:13.588 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:13.588 -07 000000627 INF: FPGA: Recv ZSGSRD 37011
17-03-17 21:18:13.598 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:13.598 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:13.598 -07 000000382 INF: FPGA: Recv ZSGSRD 37005
17-03-17 21:18:13.608 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:13.608 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:13.608 -07 000000608 INF: FPGA: Recv ZPIEZORD 33435
17-03-17 21:18:13.618 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:13.618 -07 000000415 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.935 V. Piezo Error = -7.9 V.
17-03-17 21:18:13.618 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.0 um, Read 10 ADC samples: Avg = 37007 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37008 (-177.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36995 (-177.1 uncal um), Max = 37015 (-177.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 21:18:13.618 -07 000000415 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37007, posNoise = 8, negNoise = 12
17-03-17 21:18:13.618 -07 000000415 INF: Z Motor: After move to -0.178050, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:13.618 -07 000000415 INF: Z Motor: Settle wait time = 1435 ms, measure time = 103 ms (allowed 150 ms), total time = 1538 ms
17-03-17 21:18:13.618 -07 000000415 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:18:13.668 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 21:18:13.668 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:18:13.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:13.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:13.668 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:13.668 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:13.668 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:18:13.668 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:13.668 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:18:13.668 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:18:13.678 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:13.678 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:18:13.678 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:18:13.678 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:18:13.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:18:13.728 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:18:13.928 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:18:13.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:18:13.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:18:13.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 21:18:13.968 -07 000000458 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:18:13.968 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 21:18:13.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 21:18:14.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:18:14.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:14.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:18:14.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:18:14.068 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:14.068 -07 000000512 INF: Autofocus start
17-03-17 21:18:14.068 -07 000000512 INF: MeasureProfile start
17-03-17 21:18:14.068 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:14.078 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:18:14.078 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:18:14.078 -07 000000512 INF: MeasureProfile done
17-03-17 21:18:14.078 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:18:14.078 -07 000000512 INF: Autofocus finished
17-03-17 21:18:14.278 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:18:14.278 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:18:14.278 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.178064170741283. ----------
17-03-17 21:18:14.278 -07 000000610 INF: Cycle	49	Tile	4	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:18:14.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37410, sync = True, waitForSettling = True)
17-03-17 21:18:14.288 -07 000000610 INF: Z Motor: Moving to -0.171252 mm, started at -0.178064 mm, distance = 6.81 um
17-03-17 21:18:14.288 -07 000000610 INF: FPGA: Xmit ZDACW 37410\n [Z Motor]
17-03-17 21:18:14.288 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:18:14.298 -07 000000610 INF: FPGA: 'ZDACW 37410' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:14.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:14.298 -07 000000608 INF: FPGA: Recv ZDACR 37410
17-03-17 21:18:14.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:14.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:18:14.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:14.458 -07 000000547 INF: FPGA: Recv ZSGSRD 35951
17-03-17 21:18:14.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:14.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:14.478 -07 000000458 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.03576,
17-03-17 21:18:14.478 -07 000000576 INF: FPGA: Recv ZSGSRD 35945
17-03-17 21:18:14.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:18:14.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:14.498 -07 000000608 INF: FPGA: Recv ZSGSRD 35944
17-03-17 21:18:14.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:18:14.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:14.528 -07 000000429 INF: FPGA: Recv ZSGSRD 35951
17-03-17 21:18:14.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:18:14.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:14.558 -07 000000480 INF: FPGA: Recv ZSGSRD 35945
17-03-17 21:18:14.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:18:14.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:14.568 -07 000000459 INF: FPGA: Recv ZSGSRD 35949
17-03-17 21:18:14.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:14.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:14.578 -07 000000501 INF: FPGA: Recv ZSGSRD 35945
17-03-17 21:18:14.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:14.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:14.588 -07 000000608 INF: FPGA: Recv ZSGSRD 35950
17-03-17 21:18:14.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:14.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:14.598 -07 000000429 INF: FPGA: Recv ZSGSRD 35955
17-03-17 21:18:14.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:14.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:14.608 -07 000000012 INF: FPGA: Recv ZSGSRD 35950
17-03-17 21:18:14.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:14.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:14.618 -07 000000438 INF: FPGA: Recv ZPIEZORD 32010
17-03-17 21:18:14.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:14.628 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.708 V. Piezo Error = -8.7 V.
17-03-17 21:18:14.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35948 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35950 (-170.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35944 (-170.4 uncal um), Max = 35955 (-170.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:18:14.628 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35948, posNoise = 7, negNoise = 4
17-03-17 21:18:14.628 -07 000000610 INF: Z Motor: After move to -0.171252, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:14.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 341 ms)
17-03-17 21:18:14.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:14.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:14.628 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:14.628 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:14.628 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:18:14.628 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:14.628 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:18:14.628 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:18:14.628 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:14.628 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:18:14.628 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:18:14.628 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:18:14.638 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:14.638 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:18:14.638 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:18:14.638 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:18:14.658 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 19 ms.
17-03-17 21:18:14.658 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 26 ms.
17-03-17 21:18:14.658 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 19 ms.
17-03-17 21:18:14.658 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 25 ms.
17-03-17 21:18:14.658 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37586 150\n [Camera]
17-03-17 21:18:14.858 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:18:15.288 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:18:15.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:18:15.288 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:15.288 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:18:15.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:18:15.288 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:15.298 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:15.298 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2319860952, 0x0, 391868352) start.
17-03-17 21:18:15.298 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:15.298 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:18:15.478 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37586 814
17-03-17 21:18:15.628 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:18:15.678 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2319860952, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:18:15.678 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:18:15.678 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:15.688 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:15.688 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:18:15.688 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 21:18:15.688 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:18:15.688 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:15.688 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:15.698 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 21:18:15.838 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:18:15.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:18:15.838 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:15.838 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:15.838 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:18:15.838 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:18:15.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:18:15.838 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:15.838 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:15.838 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:18:16.028 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:18:16.028 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:18:16.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37586 150' command took 2 ms to send, 1365 ms to get response, and 1370 ms overall
17-03-17 21:18:16.028 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:18:16.028 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.171260930083158. ------
17-03-17 21:18:16.038 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:16.038 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17780 mm
17-03-17 21:18:16.038 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:18:16.038 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:18:16.038 -07 000000438 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 21:18:16.038 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:16.038 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 38841, sync = True, waitForSettling = False)
17-03-17 21:18:16.038 -07 000000431 INF: Z Motor: Moving to -0.177803 mm, started at -0.171261 mm, distance = -6.54 um
17-03-17 21:18:16.048 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:18:16.048 -07 000000431 INF: FPGA: Xmit ZDACW 38841\n [Z Motor]
17-03-17 21:18:16.048 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:18:16.058 -07 000000431 INF: FPGA: 'ZDACW 38841' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:18:16.058 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:16.058 -07 000000501 INF: FPGA: Recv YRDPOS 127785
17-03-17 21:18:16.068 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:18:16.068 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:18:16.068 -07 000000438 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:16.068 -07 000000438 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:18:16.068 -07 000000438 INF: Y Motor: Moving 1340 steps-16
17-03-17 21:18:16.078 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:16.078 -07 000000501 INF: FPGA: Recv ZDACR 38841
17-03-17 21:18:16.088 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:18:16.088 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:18:16.088 -07 000000431 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 21:18:16.238 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:18:16.238 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:18:16.238 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:16.238 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:18:16.238 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:18:16.238 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:16.248 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:16.248 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:18:16.248 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 21:18:16.248 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:18:16.268 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:18:16.268 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:18:16.468 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:18:16.468 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 400 ms overall
17-03-17 21:18:16.498 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:16.508 -07 000000415 INF: FPGA: Recv YRDPOS 129481
17-03-17 21:18:16.508 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:18:16.508 -07 000000438 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:16.508 -07 000000438 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:18:16.508 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.094 mm/sec
17-03-17 21:18:16.868 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:18:16.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:18:17.458 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:17.458 -07 000000458 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:18:17.468 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:17.468 -07 000000438 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:17.488 -07 000000438 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:18:17.488 -07 000000438 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:18:17.488 -07 000000438 INF: Y Motor: Moved to 63.2236 after 1449 ms (table move)
17-03-17 21:18:17.488 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177803 mm (DAC = 38841)
17-03-17 21:18:17.488 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:17.498 -07 000000431 INF: FPGA: Recv ZSGSRD 36969
17-03-17 21:18:17.498 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:18:17.498 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:17.498 -07 000000480 INF: FPGA: Recv ZSGSRD 36975
17-03-17 21:18:17.508 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:17.508 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:17.508 -07 000000569 INF: FPGA: Recv ZSGSRD 36971
17-03-17 21:18:17.518 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:17.518 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:17.518 -07 000000429 INF: FPGA: Recv ZSGSRD 36961
17-03-17 21:18:17.528 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:17.528 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:17.528 -07 000000438 INF: FPGA: Recv ZSGSRD 36964
17-03-17 21:18:17.538 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:17.538 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:17.538 -07 000000547 INF: FPGA: Recv ZSGSRD 36964
17-03-17 21:18:17.548 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:17.548 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:17.548 -07 000000424 INF: FPGA: Recv ZSGSRD 36966
17-03-17 21:18:17.558 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:17.558 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:17.558 -07 000000569 INF: FPGA: Recv ZSGSRD 36964
17-03-17 21:18:17.568 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:17.568 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:17.568 -07 000000429 INF: FPGA: Recv ZSGSRD 36975
17-03-17 21:18:17.578 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:17.578 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:17.578 -07 000000475 INF: FPGA: Recv ZSGSRD 36975
17-03-17 21:18:17.588 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:17.588 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:17.588 -07 000000547 INF: FPGA: Recv ZPIEZORD 33392
17-03-17 21:18:17.598 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:17.598 -07 000000627 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.927 V. Piezo Error = -7.9 V.
17-03-17 21:18:17.598 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36968 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36968 (-176.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36961 (-176.9 uncal um), Max = 36975 (-177.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:18:17.598 -07 000000627 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36968, posNoise = 7, negNoise = 7
17-03-17 21:18:17.598 -07 000000627 INF: Z Motor: After move to -0.177803, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:17.598 -07 000000627 INF: Z Motor: Settle wait time = 1452 ms, measure time = 103 ms (allowed 150 ms), total time = 1555 ms
17-03-17 21:18:17.598 -07 000000627 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:18:17.648 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 21:18:17.648 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:18:17.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:17.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:17.648 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:17.648 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:17.648 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:18:17.648 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:17.658 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:17.658 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:18:17.658 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:17.658 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:18:17.668 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:18:17.668 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:18:17.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:18:17.718 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:18:17.918 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:18:17.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:18:17.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:18:17.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2390705480, 0x0, 559484976) start.
17-03-17 21:18:17.958 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:18:17.958 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:18:17.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 21:18:18.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2390705480, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 21:18:18.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:18.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:18:18.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:18:18.058 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:18.058 -07 000000480 INF: Autofocus start
17-03-17 21:18:18.058 -07 000000480 INF: MeasureProfile start
17-03-17 21:18:18.058 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:18.068 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:18:18.068 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:18:18.068 -07 000000480 INF: MeasureProfile done
17-03-17 21:18:18.068 -07 000000480 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:18:18.068 -07 000000480 INF: Autofocus finished
17-03-17 21:18:18.268 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:18:18.268 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:18:18.268 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177813626467754. ----------
17-03-17 21:18:18.268 -07 000000610 INF: Cycle	49	Tile	5	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:18:18.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37338, sync = True, waitForSettling = True)
17-03-17 21:18:18.278 -07 000000610 INF: Z Motor: Moving to -0.170922 mm, started at -0.177814 mm, distance = 6.89 um
17-03-17 21:18:18.278 -07 000000610 INF: FPGA: Xmit ZDACW 37338\n [Z Motor]
17-03-17 21:18:18.278 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:18:18.288 -07 000000610 INF: FPGA: 'ZDACW 37338' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:18.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:18.288 -07 000000626 INF: FPGA: Recv ZDACR 37338
17-03-17 21:18:18.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:18.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:18:18.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:18.448 -07 000000415 INF: FPGA: Recv ZSGSRD 35901
17-03-17 21:18:18.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:18.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:18.458 -07 000000431 INF: FPGA: Recv ZSGSRD 35896
17-03-17 21:18:18.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:18.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:18.468 -07 000000576 INF: FPGA: Recv ZSGSRD 35896
17-03-17 21:18:18.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:18.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:18.478 -07 000000480 INF: FPGA: Recv ZSGSRD 35891
17-03-17 21:18:18.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:18.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:18.488 -07 000000459 INF: FPGA: Recv ZSGSRD 35897
17-03-17 21:18:18.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:18.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:18.498 -07 000000424 INF: FPGA: Recv ZSGSRD 35892
17-03-17 21:18:18.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:18.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:18.508 -07 000000476 INF: FPGA: Recv ZSGSRD 35902
17-03-17 21:18:18.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:18.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:18.518 -07 000000626 INF: FPGA: Recv ZSGSRD 35903
17-03-17 21:18:18.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:18.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:18.528 -07 000000475 INF: FPGA: Recv ZSGSRD 35889
17-03-17 21:18:18.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:18.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:18.538 -07 000000012 INF: FPGA: Recv ZSGSRD 35899
17-03-17 21:18:18.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:18.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:18.548 -07 000000382 INF: FPGA: Recv ZPIEZORD 31964
17-03-17 21:18:18.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:18.558 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.697 V. Piezo Error = -8.7 V.
17-03-17 21:18:18.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35897 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35896 (-170.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35889 (-170.0 uncal um), Max = 35903 (-170.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:18:18.558 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35897, posNoise = 6, negNoise = 8
17-03-17 21:18:18.558 -07 000000610 INF: Z Motor: After move to -0.170922, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:18.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:18:18.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:18.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:18.558 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:18.558 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:18.558 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:18:18.558 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:18:18.558 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:18:18.558 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:18.558 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:18:18.558 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:18:18.558 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:18.558 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:18:18.558 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:18:18.558 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:18:18.568 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:18.568 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:18:18.568 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:18:18.568 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:18:18.578 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:18:18.578 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:18:18.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37515 150\n [Camera]
17-03-17 21:18:18.778 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:18:19.208 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:18:19.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:18:19.208 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:19.208 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:19.208 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 21:18:19.208 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:18:19.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:18:19.208 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:19.338 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:19.338 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 21:18:19.398 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37515 814
17-03-17 21:18:19.548 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:18:19.588 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 21:18:19.588 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:18:19.588 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:19.598 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:19.598 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:18:19.708 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 21:18:19.708 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 21:18:19.708 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:19.708 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:19.718 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-17 21:18:19.758 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:18:19.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:18:19.758 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:19.758 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:18:19.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:18:19.758 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:19.758 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:19.758 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:18:19.758 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:19.758 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:18:19.878 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.012614,
17-03-17 21:18:19.948 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1364
17-03-17 21:18:19.948 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:18:19.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37515 150' command took 2 ms to send, 1364 ms to get response, and 1371 ms overall
17-03-17 21:18:19.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:18:19.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170933295263928. ------
17-03-17 21:18:19.958 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17734 mm
17-03-17 21:18:19.958 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:18:19.958 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:19.958 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:18:19.958 -07 000000475 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 21:18:19.958 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38739, sync = True, waitForSettling = False)
17-03-17 21:18:19.958 -07 000000415 INF: Z Motor: Moving to -0.177336 mm, started at -0.170933 mm, distance = -6.40 um
17-03-17 21:18:19.958 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:19.968 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:18:19.968 -07 000000415 INF: FPGA: Xmit ZDACW 38739\n [Z Motor]
17-03-17 21:18:19.968 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:18:19.978 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:19.978 -07 000000415 INF: FPGA: 'ZDACW 38739' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:18:19.978 -07 000000576 INF: FPGA: Recv YRDPOS 129482
17-03-17 21:18:19.988 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:18:19.988 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:18:19.988 -07 000000475 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:19.988 -07 000000475 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:18:19.988 -07 000000475 INF: Y Motor: Moving 1342 steps-19
17-03-17 21:18:19.998 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:19.998 -07 000000429 INF: FPGA: Recv ZDACR 38739
17-03-17 21:18:20.008 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:18:20.008 -07 000000415 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 21:18:20.008 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:18:20.148 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 21:18:20.148 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:18:20.148 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:20.148 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 21:18:20.148 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:18:20.148 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:20.148 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:20.148 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:18:20.158 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:20.158 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:18:20.188 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:18:20.188 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:18:20.378 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 21:18:20.378 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:18:20.418 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:20.418 -07 000000501 INF: FPGA: Recv YRDPOS 131187
17-03-17 21:18:20.428 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:18:20.428 -07 000000475 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:20.428 -07 000000475 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 21:18:20.428 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 21:18:21.378 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:21.378 -07 000000547 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:18:21.388 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:21.388 -07 000000475 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:21.408 -07 000000475 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:18:21.408 -07 000000475 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:18:21.408 -07 000000475 INF: Y Motor: Moved to 64.0566 after 1445 ms (table move)
17-03-17 21:18:21.408 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177336 mm (DAC = 38739)
17-03-17 21:18:21.408 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:21.408 -07 000000547 INF: FPGA: Recv ZSGSRD 36910
17-03-17 21:18:21.418 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:18:21.418 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:21.418 -07 000000431 INF: FPGA: Recv ZSGSRD 36901
17-03-17 21:18:21.428 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:21.428 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:21.428 -07 000000576 INF: FPGA: Recv ZSGSRD 36898
17-03-17 21:18:21.438 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:21.438 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:21.438 -07 000000458 INF: FPGA: Recv ZSGSRD 36891
17-03-17 21:18:21.448 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:21.448 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:21.448 -07 000000547 INF: FPGA: Recv ZSGSRD 36898
17-03-17 21:18:21.458 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:21.458 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:21.458 -07 000000501 INF: FPGA: Recv ZSGSRD 36894
17-03-17 21:18:21.468 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:21.468 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:21.468 -07 000000608 INF: FPGA: Recv ZSGSRD 36889
17-03-17 21:18:21.478 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:21.478 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:21.478 -07 000000576 INF: FPGA: Recv ZSGSRD 36887
17-03-17 21:18:21.488 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:21.488 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:21.488 -07 000000012 INF: FPGA: Recv ZSGSRD 36898
17-03-17 21:18:21.498 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:21.498 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:21.498 -07 000000547 INF: FPGA: Recv ZSGSRD 36903
17-03-17 21:18:21.508 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:21.508 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:21.508 -07 000000459 INF: FPGA: Recv ZPIEZORD 33321
17-03-17 21:18:21.518 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:21.518 -07 000000382 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.911 V. Piezo Error = -7.9 V.
17-03-17 21:18:21.518 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36897 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36898 (-176.5 uncal um), StdDev = 7 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 36887 (-176.4 uncal um), Max = 36910 (-176.5 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 21:18:21.518 -07 000000382 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36897, posNoise = 13, negNoise = 10
17-03-17 21:18:21.518 -07 000000382 INF: Z Motor: After move to -0.177336, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:21.518 -07 000000382 INF: Z Motor: Settle wait time = 1448 ms, measure time = 106 ms (allowed 150 ms), total time = 1554 ms
17-03-17 21:18:21.518 -07 000000382 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 21:18:21.568 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 21:18:21.568 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:18:21.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:21.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:21.568 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:21.568 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:21.568 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:18:21.568 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:21.568 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:18:21.568 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:18:21.578 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:21.578 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:18:21.578 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:18:21.578 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 21:18:21.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:18:21.628 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:18:21.828 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:18:21.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:18:21.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:18:21.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 21:18:21.868 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:18:21.868 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:18:21.868 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 21:18:21.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 21:18:21.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:18:21.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:21.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:18:21.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:18:21.958 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:18:21.968 -07 000000424 INF: Autofocus start
17-03-17 21:18:21.968 -07 000000424 INF: MeasureProfile start
17-03-17 21:18:21.968 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:21.968 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:21.978 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:18:21.978 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:18:21.978 -07 000000424 INF: MeasureProfile done
17-03-17 21:18:21.978 -07 000000424 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:18:21.978 -07 000000424 INF: Autofocus finished
17-03-17 21:18:22.178 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:18:22.178 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:18:22.178 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.177357507405689. ----------
17-03-17 21:18:22.178 -07 000000610 INF: Cycle	49	Tile	6	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:18:22.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37272, sync = True, waitForSettling = True)
17-03-17 21:18:22.188 -07 000000610 INF: Z Motor: Moving to -0.170620 mm, started at -0.177358 mm, distance = 6.74 um
17-03-17 21:18:22.188 -07 000000610 INF: FPGA: Xmit ZDACW 37272\n [Z Motor]
17-03-17 21:18:22.188 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:18:22.198 -07 000000610 INF: FPGA: 'ZDACW 37272' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:18:22.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:22.198 -07 000000415 INF: FPGA: Recv ZDACR 37272
17-03-17 21:18:22.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:22.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:18:22.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:22.358 -07 000000459 INF: FPGA: Recv ZSGSRD 35848
17-03-17 21:18:22.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:22.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:22.368 -07 000000501 INF: FPGA: Recv ZSGSRD 35847
17-03-17 21:18:22.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:22.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:22.378 -07 000000627 INF: FPGA: Recv ZSGSRD 35854
17-03-17 21:18:22.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:22.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:22.388 -07 000000424 INF: FPGA: Recv ZSGSRD 35845
17-03-17 21:18:22.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:22.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:22.398 -07 000000608 INF: FPGA: Recv ZSGSRD 35845
17-03-17 21:18:22.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:22.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:22.408 -07 000000569 INF: FPGA: Recv ZSGSRD 35853
17-03-17 21:18:22.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:22.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:22.418 -07 000000429 INF: FPGA: Recv ZSGSRD 35847
17-03-17 21:18:22.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:22.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:22.428 -07 000000576 INF: FPGA: Recv ZSGSRD 35857
17-03-17 21:18:22.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:22.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:22.438 -07 000000431 INF: FPGA: Recv ZSGSRD 35850
17-03-17 21:18:22.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:22.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:22.448 -07 000000415 INF: FPGA: Recv ZSGSRD 35855
17-03-17 21:18:22.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:22.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:22.458 -07 000000476 INF: FPGA: Recv ZPIEZORD 31889
17-03-17 21:18:22.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:22.468 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.687 V. Piezo Error = -8.8 V.
17-03-17 21:18:22.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35850 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35849 (-169.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35845 (-169.7 uncal um), Max = 35857 (-169.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:18:22.468 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35850, posNoise = 7, negNoise = 5
17-03-17 21:18:22.468 -07 000000610 INF: Z Motor: After move to -0.170620, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:22.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:18:22.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:22.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:22.468 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:22.468 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:22.468 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:18:22.468 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:22.468 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:18:22.468 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:18:22.468 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:22.468 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:18:22.468 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:18:22.468 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:18:22.478 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:18:22.478 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:18:22.478 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:18:22.478 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:18:22.478 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:18:22.478 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:18:22.478 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:18:22.478 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:18:22.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37449 150\n [Camera]
17-03-17 21:18:22.688 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:18:23.118 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:18:23.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:18:23.118 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:23.118 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:23.118 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:18:23.118 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:18:23.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:18:23.118 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:23.238 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:23.248 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 21:18:23.308 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37449 814
17-03-17 21:18:23.458 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:18:23.498 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:18:23.498 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:18:23.498 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:23.498 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:18:23.498 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:18:23.618 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:18:23.618 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 21:18:23.618 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:23.618 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:18:23.628 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-17 21:18:23.658 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:18:23.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:18:23.668 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:23.668 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:18:23.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:18:23.668 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:23.668 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:23.668 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:18:23.678 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:23.678 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:18:23.858 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:18:23.858 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:18:23.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37449 150' command took 2 ms to send, 1361 ms to get response, and 1369 ms overall
17-03-17 21:18:23.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:18:23.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.170631357293265. ------
17-03-17 21:18:23.868 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:23.868 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17713 mm
17-03-17 21:18:23.868 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:18:23.868 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:23.868 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:18:23.868 -07 000000475 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 21:18:23.868 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38694, sync = True, waitForSettling = False)
17-03-17 21:18:23.868 -07 000000547 INF: Z Motor: Moving to -0.177130 mm, started at -0.170631 mm, distance = -6.50 um
17-03-17 21:18:23.878 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:23.878 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:23.878 -07 000000501 INF: FPGA: Recv YRDPOS 131188
17-03-17 21:18:23.888 -07 000000547 INF: FPGA: Xmit ZDACW 38694\n [Z Motor]
17-03-17 21:18:23.888 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:18:23.888 -07 000000475 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:23.888 -07 000000475 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:18:23.888 -07 000000475 INF: Y Motor: Moving 1338 steps-13
17-03-17 21:18:23.888 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:18:23.898 -07 000000547 INF: FPGA: 'ZDACW 38694' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:18:23.898 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:18:23.908 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:18:23.918 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:23.918 -07 000000429 INF: FPGA: Recv ZDACR 38694
17-03-17 21:18:23.928 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:18:23.928 -07 000000547 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 21:18:24.068 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:18:24.068 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:18:24.068 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:24.068 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:24.068 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:18:24.068 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 21:18:24.068 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:18:24.068 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:24.078 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:24.078 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 21:18:24.098 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:18:24.098 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:18:24.278 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 21:18:24.278 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:18:24.318 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:24.318 -07 000000476 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:18:24.328 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:18:24.328 -07 000000475 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:24.328 -07 000000475 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:18:24.328 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.836 mm, average velocity = 2.106 mm/sec
17-03-17 21:18:25.248 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.009895,
17-03-17 21:18:25.278 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:25.278 -07 000000012 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:18:25.288 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:25.288 -07 000000475 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:25.308 -07 000000475 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:18:25.308 -07 000000475 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:18:25.308 -07 000000475 INF: Y Motor: Moved to 64.8784 after 1441 ms (table move)
17-03-17 21:18:25.308 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177130 mm (DAC = 38694)
17-03-17 21:18:25.308 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:25.318 -07 000000424 INF: FPGA: Recv ZSGSRD 36866
17-03-17 21:18:25.318 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:18:25.318 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:25.318 -07 000000438 INF: FPGA: Recv ZSGSRD 36862
17-03-17 21:18:25.328 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:18:25.328 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:25.328 -07 000000547 INF: FPGA: Recv ZSGSRD 36861
17-03-17 21:18:25.338 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:25.338 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:25.338 -07 000000431 INF: FPGA: Recv ZSGSRD 36867
17-03-17 21:18:25.348 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:25.348 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:25.348 -07 000000458 INF: FPGA: Recv ZSGSRD 36858
17-03-17 21:18:25.358 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:25.358 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:25.358 -07 000000424 INF: FPGA: Recv ZSGSRD 36873
17-03-17 21:18:25.368 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:25.368 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:25.368 -07 000000438 INF: FPGA: Recv ZSGSRD 36861
17-03-17 21:18:25.378 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:25.378 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:25.378 -07 000000475 INF: FPGA: Recv ZSGSRD 36865
17-03-17 21:18:25.388 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:25.388 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:25.388 -07 000000626 INF: FPGA: Recv ZSGSRD 36858
17-03-17 21:18:25.398 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:25.398 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:25.398 -07 000000569 INF: FPGA: Recv ZSGSRD 36857
17-03-17 21:18:25.408 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:25.408 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:25.408 -07 000000501 INF: FPGA: Recv ZPIEZORD 33252
17-03-17 21:18:25.418 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:25.418 -07 000000459 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.904 V. Piezo Error = -8.0 V.
17-03-17 21:18:25.418 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36863 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36862 (-176.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36857 (-176.2 uncal um), Max = 36873 (-176.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:18:25.418 -07 000000459 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36863, posNoise = 10, negNoise = 6
17-03-17 21:18:25.418 -07 000000459 INF: Z Motor: After move to -0.177130, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:25.418 -07 000000459 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms
17-03-17 21:18:25.418 -07 000000459 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:18:25.468 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 21:18:25.468 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:18:25.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:25.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:25.468 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:25.468 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:25.468 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:18:25.468 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:25.468 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:25.468 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:18:25.478 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:25.478 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:18:25.488 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:18:25.488 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:18:25.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:18:25.538 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:18:25.738 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:18:25.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:18:25.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:18:25.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 21:18:25.778 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:18:25.778 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 21:18:25.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:18:25.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:18:25.868 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:25.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:18:25.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 21:18:25.878 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:25.878 -07 000000512 INF: Autofocus start
17-03-17 21:18:25.878 -07 000000512 INF: MeasureProfile start
17-03-17 21:18:25.878 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:25.888 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:18:25.888 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:18:25.888 -07 000000512 INF: MeasureProfile done
17-03-17 21:18:25.888 -07 000000512 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:18:25.888 -07 000000512 INF: Autofocus finished
17-03-17 21:18:26.088 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:18:26.088 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:18:26.088 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.177139084192869. ----------
17-03-17 21:18:26.098 -07 000000610 INF: Cycle	49	Tile	7	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:18:26.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37208, sync = True, waitForSettling = True)
17-03-17 21:18:26.098 -07 000000610 INF: Z Motor: Moving to -0.170327 mm, started at -0.177139 mm, distance = 6.81 um
17-03-17 21:18:26.098 -07 000000610 INF: FPGA: Xmit ZDACW 37208\n [Z Motor]
17-03-17 21:18:26.098 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:18:26.108 -07 000000610 INF: FPGA: 'ZDACW 37208' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:18:26.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:26.108 -07 000000475 INF: FPGA: Recv ZDACR 37208
17-03-17 21:18:26.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:26.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:18:26.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:26.268 -07 000000608 INF: FPGA: Recv ZSGSRD 35802
17-03-17 21:18:26.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:26.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:26.278 -07 000000424 INF: FPGA: Recv ZSGSRD 35802
17-03-17 21:18:26.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:26.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:26.288 -07 000000438 INF: FPGA: Recv ZSGSRD 35802
17-03-17 21:18:26.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:26.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:26.298 -07 000000415 INF: FPGA: Recv ZSGSRD 35807
17-03-17 21:18:26.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:26.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:26.308 -07 000000476 INF: FPGA: Recv ZSGSRD 35800
17-03-17 21:18:26.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:26.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:26.318 -07 000000569 INF: FPGA: Recv ZSGSRD 35802
17-03-17 21:18:26.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:26.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:26.328 -07 000000431 INF: FPGA: Recv ZSGSRD 35807
17-03-17 21:18:26.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:26.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:26.338 -07 000000458 INF: FPGA: Recv ZSGSRD 35811
17-03-17 21:18:26.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:26.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:26.348 -07 000000626 INF: FPGA: Recv ZSGSRD 35805
17-03-17 21:18:26.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:26.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:26.358 -07 000000512 INF: FPGA: Recv ZSGSRD 35805
17-03-17 21:18:26.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:26.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:26.368 -07 000000608 INF: FPGA: Recv ZPIEZORD 31855
17-03-17 21:18:26.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:26.378 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -8.7 V.
17-03-17 21:18:26.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35804 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35804 (-169.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35800 (-169.4 uncal um), Max = 35811 (-169.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:18:26.378 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35804, posNoise = 7, negNoise = 4
17-03-17 21:18:26.378 -07 000000610 INF: Z Motor: After move to -0.170327, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:26.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:18:26.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:26.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:26.378 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:26.378 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:18:26.378 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:26.378 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:26.378 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:18:26.378 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:18:26.378 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:26.378 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:18:26.378 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:18:26.378 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:18:26.388 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:26.388 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:18:26.388 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:18:26.388 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:18:26.388 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:18:26.388 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:18:26.398 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:18:26.398 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:18:26.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37385 150\n [Camera]
17-03-17 21:18:26.598 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:18:26.868 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:18:26.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:18:27.028 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:18:27.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:18:27.028 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:27.028 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:27.028 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 21:18:27.028 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:18:27.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:18:27.028 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:27.028 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:27.028 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:18:27.218 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37385 814
17-03-17 21:18:27.368 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:18:27.408 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:18:27.408 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:18:27.408 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:27.408 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:18:27.408 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:18:27.408 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:27.408 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:27.418 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:27.418 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 21:18:27.418 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:18:27.578 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:18:27.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:18:27.578 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:27.698 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:18:27.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:18:27.698 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:27.698 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:27.698 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:18:27.698 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:27.698 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-17 21:18:27.768 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:18:27.768 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:18:27.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37385 150' command took 2 ms to send, 1362 ms to get response, and 1370 ms overall
17-03-17 21:18:27.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:18:27.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.170335843534744. ------
17-03-17 21:18:27.768 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:27.768 -07 000000626 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17698 mm
17-03-17 21:18:27.768 -07 000000626 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:18:27.778 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:27.778 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:18:27.778 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:18:27.778 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38662, sync = True, waitForSettling = False)
17-03-17 21:18:27.778 -07 000000459 INF: Z Motor: Moving to -0.176983 mm, started at -0.170336 mm, distance = -6.65 um
17-03-17 21:18:27.778 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:18:27.778 -07 000000501 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 21:18:27.788 -07 000000459 INF: FPGA: Xmit ZDACW 38662\n [Z Motor]
17-03-17 21:18:27.788 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:18:27.798 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:27.798 -07 000000459 INF: FPGA: 'ZDACW 38662' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:18:27.798 -07 000000429 INF: FPGA: Recv YRDPOS 132871
17-03-17 21:18:27.808 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:18:27.808 -07 000000501 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:27.808 -07 000000501 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:18:27.808 -07 000000501 INF: Y Motor: Moving 1351 steps-29
17-03-17 21:18:27.808 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:27.808 -07 000000012 INF: FPGA: Recv ZDACR 38662
17-03-17 21:18:27.818 -07 000000459 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:18:27.818 -07 000000459 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 21:18:27.818 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:18:27.978 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:18:27.978 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:18:28.088 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 21:18:28.088 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:18:28.088 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:28.088 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:18:28.088 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:18:28.088 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:28.088 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:28.098 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:28.098 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-17 21:18:28.098 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:18:28.188 -07 000000458 INF: FPGA: Recv YMVTILE
17-03-17 21:18:28.188 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 21:18:28.228 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:28.228 -07 000000424 INF: FPGA: Recv YRDPOS 134581
17-03-17 21:18:28.238 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:18:28.238 -07 000000501 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:28.238 -07 000000501 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:18:28.238 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.176 mm/sec
17-03-17 21:18:29.188 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:29.188 -07 000000576 INF: FPGA: Recv YRDPOS 134581
17-03-17 21:18:29.198 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:29.198 -07 000000501 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:29.218 -07 000000501 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:18:29.218 -07 000000501 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:18:29.218 -07 000000501 INF: Y Motor: Moved to 65.7134 after 1447 ms (table move)
17-03-17 21:18:29.228 -07 000000626 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176983 mm (DAC = 38662)
17-03-17 21:18:29.228 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:29.228 -07 000000512 INF: FPGA: Recv ZSGSRD 36835
17-03-17 21:18:29.238 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:18:29.238 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:29.238 -07 000000547 INF: FPGA: Recv ZSGSRD 36838
17-03-17 21:18:29.248 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:29.248 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:29.248 -07 000000501 INF: FPGA: Recv ZSGSRD 36836
17-03-17 21:18:29.258 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:29.258 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:29.258 -07 000000458 INF: FPGA: Recv ZSGSRD 36835
17-03-17 21:18:29.268 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:29.268 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:29.268 -07 000000431 INF: FPGA: Recv ZSGSRD 36836
17-03-17 21:18:29.278 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:29.278 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:29.278 -07 000000501 INF: FPGA: Recv ZSGSRD 36836
17-03-17 21:18:29.288 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:29.288 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:29.288 -07 000000438 INF: FPGA: Recv ZSGSRD 36834
17-03-17 21:18:29.298 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:29.298 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:29.298 -07 000000547 INF: FPGA: Recv ZSGSRD 36843
17-03-17 21:18:29.308 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:29.308 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:29.308 -07 000000576 INF: FPGA: Recv ZSGSRD 36838
17-03-17 21:18:29.318 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:29.318 -07 000000626 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:29.318 -07 000000415 INF: FPGA: Recv ZSGSRD 36845
17-03-17 21:18:29.328 -07 000000626 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:29.328 -07 000000626 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:29.328 -07 000000501 INF: FPGA: Recv ZPIEZORD 33264
17-03-17 21:18:29.338 -07 000000626 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:29.338 -07 000000626 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.899 V. Piezo Error = -7.9 V.
17-03-17 21:18:29.338 -07 000000626 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36838 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36836 (-176.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36834 (-176.1 uncal um), Max = 36845 (-176.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:18:29.338 -07 000000626 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36838, posNoise = 7, negNoise = 4
17-03-17 21:18:29.338 -07 000000626 INF: Z Motor: After move to -0.176983, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:29.338 -07 000000626 INF: Z Motor: Settle wait time = 1450 ms, measure time = 109 ms (allowed 150 ms), total time = 1559 ms
17-03-17 21:18:29.338 -07 000000626 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 21:18:29.388 -07 000000626 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-17 21:18:29.388 -07 000000626 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:18:29.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:29.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:29.388 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:29.388 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:29.388 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:18:29.388 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:29.388 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:29.388 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:18:29.398 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:29.398 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:18:29.408 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:18:29.408 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:18:29.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:18:29.448 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:18:29.648 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:18:29.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:18:29.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:18:29.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2350877912, 0x0, 559484976) start.
17-03-17 21:18:29.688 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:18:29.688 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:18:29.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:18:29.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2350877912, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 21:18:29.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:29.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:18:29.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 21:18:29.788 -07 000000626 INF: Autofocus start
17-03-17 21:18:29.788 -07 000000626 INF: MeasureProfile start
17-03-17 21:18:29.788 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:29.788 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:29.798 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:18:29.798 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:18:29.798 -07 000000626 INF: MeasureProfile done
17-03-17 21:18:29.798 -07 000000626 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:18:29.798 -07 000000626 INF: Autofocus finished
17-03-17 21:18:29.998 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:18:29.998 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:18:29.998 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.176978478889325. ----------
17-03-17 21:18:29.998 -07 000000610 INF: Cycle	49	Tile	8	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:18:30.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37159, sync = True, waitForSettling = True)
17-03-17 21:18:30.008 -07 000000610 INF: Z Motor: Moving to -0.170103 mm, started at -0.176978 mm, distance = 6.88 um
17-03-17 21:18:30.008 -07 000000610 INF: FPGA: Xmit ZDACW 37159\n [Z Motor]
17-03-17 21:18:30.008 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:18:30.018 -07 000000610 INF: FPGA: 'ZDACW 37159' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:18:30.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:30.018 -07 000000501 INF: FPGA: Recv ZDACR 37159
17-03-17 21:18:30.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:30.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:18:30.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:30.178 -07 000000576 INF: FPGA: Recv ZSGSRD 35770
17-03-17 21:18:30.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:30.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:30.188 -07 000000429 INF: FPGA: Recv ZSGSRD 35778
17-03-17 21:18:30.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:30.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:30.198 -07 000000475 INF: FPGA: Recv ZSGSRD 35766
17-03-17 21:18:30.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:30.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:30.208 -07 000000438 INF: FPGA: Recv ZSGSRD 35764
17-03-17 21:18:30.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:30.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:30.218 -07 000000608 INF: FPGA: Recv ZSGSRD 35770
17-03-17 21:18:30.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:30.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:30.228 -07 000000476 INF: FPGA: Recv ZSGSRD 35766
17-03-17 21:18:30.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:30.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:30.238 -07 000000626 INF: FPGA: Recv ZSGSRD 35766
17-03-17 21:18:30.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:30.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:30.248 -07 000000480 INF: FPGA: Recv ZSGSRD 35766
17-03-17 21:18:30.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:30.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:30.258 -07 000000431 INF: FPGA: Recv ZSGSRD 35770
17-03-17 21:18:30.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:30.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:30.268 -07 000000012 INF: FPGA: Recv ZSGSRD 35775
17-03-17 21:18:30.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:30.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:30.278 -07 000000576 INF: FPGA: Recv ZPIEZORD 31831
17-03-17 21:18:30.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:30.288 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.670 V. Piezo Error = -8.7 V.
17-03-17 21:18:30.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35769 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35768 (-169.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35764 (-169.2 uncal um), Max = 35778 (-169.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:18:30.288 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35769, posNoise = 9, negNoise = 5
17-03-17 21:18:30.288 -07 000000610 INF: Z Motor: After move to -0.170103, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:30.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:18:30.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:30.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:30.288 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:30.288 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:18:30.288 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:30.288 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:30.288 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:30.288 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:18:30.288 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:18:30.288 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:18:30.288 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:18:30.288 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:18:30.298 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:18:30.298 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:18:30.298 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:18:30.298 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:18:30.298 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:18:30.298 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:18:30.298 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:18:30.298 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:18:30.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37335 150\n [Camera]
17-03-17 21:18:30.508 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:18:30.628 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.994908,
17-03-17 21:18:30.938 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:18:30.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:18:30.948 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:30.948 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:30.948 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:18:30.948 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:18:30.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:18:30.948 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:30.948 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:30.948 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:18:31.138 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37335 814
17-03-17 21:18:31.288 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:18:31.318 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:18:31.318 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:18:31.318 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:31.318 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:18:31.318 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:18:31.318 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:31.328 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:18:31.328 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 21:18:31.328 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:18:31.338 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:18:31.488 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:18:31.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:18:31.488 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:31.598 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:18:31.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:18:31.598 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:31.598 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:31.598 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:18:31.608 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:31.608 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-17 21:18:31.678 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:18:31.688 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:18:31.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37335 150' command took 2 ms to send, 1360 ms to get response, and 1378 ms overall
17-03-17 21:18:31.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:18:31.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.170110996109783. ------
17-03-17 21:18:31.688 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:31.688 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17646 mm
17-03-17 21:18:31.688 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:18:31.688 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:31.688 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38548, sync = True, waitForSettling = False)
17-03-17 21:18:31.688 -07 000000480 INF: Z Motor: Moving to -0.176461 mm, started at -0.170111 mm, distance = -6.35 um
17-03-17 21:18:31.688 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:18:31.688 -07 000000627 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-17 21:18:31.698 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:18:31.698 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:31.698 -07 000000431 INF: FPGA: Recv YRDPOS 134582
17-03-17 21:18:31.708 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:18:31.708 -07 000000627 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:31.708 -07 000000480 INF: FPGA: Xmit ZDACW 38548\n [Z Motor]
17-03-17 21:18:31.708 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:18:31.708 -07 000000627 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:18:31.708 -07 000000627 INF: Y Motor: Moving 1342 steps-19
17-03-17 21:18:31.718 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:18:31.718 -07 000000480 INF: FPGA: 'ZDACW 38548' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 21:18:31.728 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:18:31.738 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:31.738 -07 000000576 INF: FPGA: Recv ZDACR 38548
17-03-17 21:18:31.748 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:18:31.748 -07 000000480 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 21:18:31.868 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:18:31.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:18:31.918 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:18:31.918 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:18:31.998 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:18:31.998 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:18:31.998 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:32.008 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 21:18:32.008 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 21:18:32.008 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:32.008 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:32.008 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:32.008 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-17 21:18:32.018 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:18:32.098 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 21:18:32.098 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 21:18:32.138 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:32.138 -07 000000012 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:18:32.148 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:18:32.148 -07 000000627 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:32.148 -07 000000627 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:18:32.148 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.839 mm, average velocity = 2.146 mm/sec
17-03-17 21:18:33.098 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:33.098 -07 000000547 INF: FPGA: Recv YRDPOS 136271
17-03-17 21:18:33.108 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:33.108 -07 000000627 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:33.128 -07 000000627 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:18:33.128 -07 000000627 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:18:33.128 -07 000000627 INF: Y Motor: Moved to 66.5386 after 1437 ms (table move)
17-03-17 21:18:33.128 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176461 mm (DAC = 38548)
17-03-17 21:18:33.128 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:33.138 -07 000000424 INF: FPGA: Recv ZSGSRD 36763
17-03-17 21:18:33.148 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:33.148 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:33.148 -07 000000438 INF: FPGA: Recv ZSGSRD 36757
17-03-17 21:18:33.158 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:33.158 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:33.158 -07 000000626 INF: FPGA: Recv ZSGSRD 36764
17-03-17 21:18:33.168 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:33.168 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:33.168 -07 000000547 INF: FPGA: Recv ZSGSRD 36757
17-03-17 21:18:33.178 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:33.178 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:33.178 -07 000000475 INF: FPGA: Recv ZSGSRD 36758
17-03-17 21:18:33.188 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:33.188 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:33.188 -07 000000431 INF: FPGA: Recv ZSGSRD 36758
17-03-17 21:18:33.198 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:18:33.198 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:33.198 -07 000000569 INF: FPGA: Recv ZSGSRD 36754
17-03-17 21:18:33.208 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:33.208 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:33.208 -07 000000438 INF: FPGA: Recv ZSGSRD 36757
17-03-17 21:18:33.218 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:33.218 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:33.218 -07 000000626 INF: FPGA: Recv ZSGSRD 36757
17-03-17 21:18:33.228 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:33.228 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:33.228 -07 000000012 INF: FPGA: Recv ZSGSRD 36766
17-03-17 21:18:33.238 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:33.238 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:33.238 -07 000000431 INF: FPGA: Recv ZPIEZORD 33168
17-03-17 21:18:33.248 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:33.248 -07 000000382 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.882 V. Piezo Error = -8.0 V.
17-03-17 21:18:33.248 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36759 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36758 (-175.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36754 (-175.5 uncal um), Max = 36766 (-175.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:18:33.248 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36759, posNoise = 7, negNoise = 5
17-03-17 21:18:33.248 -07 000000382 INF: Z Motor: After move to -0.176461, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:33.248 -07 000000382 INF: Z Motor: Settle wait time = 1441 ms, measure time = 111 ms (allowed 150 ms), total time = 1552 ms
17-03-17 21:18:33.248 -07 000000382 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 21:18:33.288 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 21:18:33.288 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:18:33.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:33.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:33.288 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:33.288 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:18:33.288 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:33.288 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:33.288 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:33.288 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:18:33.298 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:18:33.298 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:18:33.298 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:18:33.298 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 21:18:33.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:18:33.348 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 21:18:33.548 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 21:18:33.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 21:18:33.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:18:33.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2350877912, 0x0, 559484976) start.
17-03-17 21:18:33.588 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:18:33.588 -07 000000626 INF: FPGA: Recv CAMSNAP
17-03-17 21:18:33.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 21:18:33.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2350877912, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:18:33.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:33.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:18:33.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:18:33.688 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:33.688 -07 000000547 INF: Autofocus start
17-03-17 21:18:33.688 -07 000000547 INF: MeasureProfile start
17-03-17 21:18:33.688 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:33.698 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:18:33.698 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:18:33.698 -07 000000547 INF: MeasureProfile done
17-03-17 21:18:33.698 -07 000000547 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:18:33.698 -07 000000547 INF: Autofocus finished
17-03-17 21:18:33.898 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:18:33.898 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:18:33.898 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.176470966130126. ----------
17-03-17 21:18:33.898 -07 000000610 INF: Cycle	49	Tile	9	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:18:33.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37063, sync = True, waitForSettling = True)
17-03-17 21:18:33.908 -07 000000610 INF: Z Motor: Moving to -0.169664 mm, started at -0.176471 mm, distance = 6.81 um
17-03-17 21:18:33.908 -07 000000610 INF: FPGA: Xmit ZDACW 37063\n [Z Motor]
17-03-17 21:18:33.908 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:18:33.918 -07 000000610 INF: FPGA: 'ZDACW 37063' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:18:33.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:33.918 -07 000000480 INF: FPGA: Recv ZDACR 37063
17-03-17 21:18:33.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:33.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:18:34.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:34.078 -07 000000569 INF: FPGA: Recv ZSGSRD 35701
17-03-17 21:18:34.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:34.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:34.088 -07 000000415 INF: FPGA: Recv ZSGSRD 35697
17-03-17 21:18:34.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:34.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:34.098 -07 000000438 INF: FPGA: Recv ZSGSRD 35705
17-03-17 21:18:34.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:34.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:34.108 -07 000000431 INF: FPGA: Recv ZSGSRD 35697
17-03-17 21:18:34.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:34.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:34.118 -07 000000501 INF: FPGA: Recv ZSGSRD 35701
17-03-17 21:18:34.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:34.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:34.128 -07 000000459 INF: FPGA: Recv ZSGSRD 35698
17-03-17 21:18:34.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:34.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:34.138 -07 000000608 INF: FPGA: Recv ZSGSRD 35703
17-03-17 21:18:34.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:34.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:34.148 -07 000000424 INF: FPGA: Recv ZSGSRD 35697
17-03-17 21:18:34.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:34.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:34.158 -07 000000476 INF: FPGA: Recv ZSGSRD 35699
17-03-17 21:18:34.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:34.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:34.168 -07 000000480 INF: FPGA: Recv ZSGSRD 35703
17-03-17 21:18:34.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:34.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:34.178 -07 000000459 INF: FPGA: Recv ZPIEZORD 31759
17-03-17 21:18:34.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:34.188 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.655 V. Piezo Error = -8.7 V.
17-03-17 21:18:34.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35700 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35700 (-168.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35697 (-168.8 uncal um), Max = 35705 (-168.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:18:34.188 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35700, posNoise = 5, negNoise = 3
17-03-17 21:18:34.188 -07 000000610 INF: Z Motor: After move to -0.169664, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:34.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:18:34.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:34.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:34.188 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:34.188 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:34.188 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:18:34.188 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:18:34.188 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:34.188 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:18:34.188 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:34.188 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:18:34.188 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:18:34.188 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:18:34.198 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:34.198 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:18:34.198 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:18:34.198 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:18:34.208 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:18:34.208 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 21:18:34.208 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 21:18:34.208 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 21:18:34.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37239 150\n [Camera]
17-03-17 21:18:34.418 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:18:34.848 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:18:34.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:18:34.848 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:34.848 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:18:34.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:18:34.848 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:34.848 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:34.858 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:18:34.858 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:34.858 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:18:35.038 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37239 814
17-03-17 21:18:35.188 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:18:35.248 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:18:35.248 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:18:35.248 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:35.248 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 21:18:35.248 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:18:35.248 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:35.248 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:35.248 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:18:35.248 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:35.258 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 21:18:35.388 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:18:35.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:18:35.398 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:35.398 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:18:35.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:18:35.398 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:35.398 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:18:35.398 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:35.398 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:35.398 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:18:35.588 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:18:35.588 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:18:35.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37239 150' command took 2 ms to send, 1361 ms to get response, and 1370 ms overall
17-03-17 21:18:35.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:18:35.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.169667725472001. ------
17-03-17 21:18:35.588 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:35.588 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17652 mm
17-03-17 21:18:35.588 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:18:35.588 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:18:35.708 -07 000000626 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 21:18:35.708 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:35.708 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 119 ms overall
17-03-17 21:18:35.708 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 38560, sync = True, waitForSettling = False)
17-03-17 21:18:35.708 -07 000000424 INF: Z Motor: Moving to -0.176516 mm, started at -0.169668 mm, distance = -6.85 um
17-03-17 21:18:35.718 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:18:35.728 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:35.728 -07 000000501 INF: FPGA: Recv YRDPOS 136272
17-03-17 21:18:35.738 -07 000000424 INF: FPGA: Xmit ZDACW 38560\n [Z Motor]
17-03-17 21:18:35.738 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:18:35.738 -07 000000626 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:35.738 -07 000000458 INF: FPGA: Recv ZDACW
17-03-17 21:18:35.738 -07 000000626 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:18:35.738 -07 000000626 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:18:35.748 -07 000000424 INF: FPGA: 'ZDACW 38560' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 21:18:35.748 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:35.748 -07 000000475 INF: FPGA: Recv ZDACR 38560
17-03-17 21:18:35.758 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:18:35.758 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:35.758 -07 000000424 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 21:18:35.788 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:18:35.788 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:18:35.788 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:35.788 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:35.788 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:18:35.788 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:18:35.788 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:35.798 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:35.798 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:18:35.798 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:18:35.918 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:18:35.918 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 205 ms overall
17-03-17 21:18:36.028 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.986717,
17-03-17 21:18:36.128 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:18:36.128 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 392 ms overall
17-03-17 21:18:36.168 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:36.168 -07 000000438 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:18:36.178 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:18:36.178 -07 000000626 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:36.178 -07 000000626 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 21:18:36.178 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.153 mm/sec
17-03-17 21:18:36.868 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:18:36.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:18:37.128 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:37.128 -07 000000458 INF: FPGA: Recv YRDPOS 137977
17-03-17 21:18:37.138 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:37.138 -07 000000626 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:37.158 -07 000000626 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:18:37.158 -07 000000626 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:18:37.158 -07 000000626 INF: Y Motor: Moved to 67.3716 after 1447 ms (table move)
17-03-17 21:18:37.158 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176516 mm (DAC = 38560)
17-03-17 21:18:37.158 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:37.168 -07 000000501 INF: FPGA: Recv ZSGSRD 36770
17-03-17 21:18:37.168 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:18:37.168 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:37.168 -07 000000458 INF: FPGA: Recv ZSGSRD 36769
17-03-17 21:18:37.178 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:37.178 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:37.178 -07 000000547 INF: FPGA: Recv ZSGSRD 36778
17-03-17 21:18:37.188 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:37.188 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:37.188 -07 000000569 INF: FPGA: Recv ZSGSRD 36763
17-03-17 21:18:37.198 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:37.198 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:37.198 -07 000000429 INF: FPGA: Recv ZSGSRD 36763
17-03-17 21:18:37.208 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:37.208 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:37.208 -07 000000576 INF: FPGA: Recv ZSGSRD 36773
17-03-17 21:18:37.218 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:37.218 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:37.218 -07 000000458 INF: FPGA: Recv ZSGSRD 36762
17-03-17 21:18:37.228 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:37.228 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:37.228 -07 000000547 INF: FPGA: Recv ZSGSRD 36763
17-03-17 21:18:37.238 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:37.238 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:37.238 -07 000000424 INF: FPGA: Recv ZSGSRD 36763
17-03-17 21:18:37.248 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:37.248 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:37.248 -07 000000475 INF: FPGA: Recv ZSGSRD 36775
17-03-17 21:18:37.258 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:37.258 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:37.258 -07 000000626 INF: FPGA: Recv ZPIEZORD 33149
17-03-17 21:18:37.268 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:37.268 -07 000000382 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.884 V. Piezo Error = -8.0 V.
17-03-17 21:18:37.268 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36768 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36766 (-175.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36762 (-175.6 uncal um), Max = 36778 (-175.7 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:18:37.268 -07 000000382 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36768, posNoise = 10, negNoise = 6
17-03-17 21:18:37.268 -07 000000382 INF: Z Motor: After move to -0.176516, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:37.268 -07 000000382 INF: Z Motor: Settle wait time = 1450 ms, measure time = 103 ms (allowed 150 ms), total time = 1553 ms
17-03-17 21:18:37.268 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:18:37.318 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1722 ms
17-03-17 21:18:37.318 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:18:37.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:37.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:37.318 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:37.318 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:37.318 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:18:37.318 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:37.318 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:37.318 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:18:37.328 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:37.328 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:18:37.328 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:18:37.328 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:18:37.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:18:37.378 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:18:37.578 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:18:37.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:18:37.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:18:37.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:18:37.618 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:18:37.618 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 21:18:37.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 21:18:37.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 21:18:37.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:37.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:18:37.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 21:18:37.718 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:37.718 -07 000000501 INF: Autofocus start
17-03-17 21:18:37.718 -07 000000501 INF: MeasureProfile start
17-03-17 21:18:37.718 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:37.728 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:18:37.728 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:18:37.728 -07 000000501 INF: MeasureProfile done
17-03-17 21:18:37.728 -07 000000501 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:18:37.728 -07 000000501 INF: Autofocus finished
17-03-17 21:18:37.928 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:18:37.928 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:18:37.928 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.176528784039402. ----------
17-03-17 21:18:37.928 -07 000000610 INF: Cycle	49	Tile	10	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:18:37.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37057, sync = True, waitForSettling = True)
17-03-17 21:18:37.938 -07 000000610 INF: Z Motor: Moving to -0.169636 mm, started at -0.176529 mm, distance = 6.89 um
17-03-17 21:18:37.938 -07 000000610 INF: FPGA: Xmit ZDACW 37057\n [Z Motor]
17-03-17 21:18:37.938 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:18:37.948 -07 000000610 INF: FPGA: 'ZDACW 37057' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:18:37.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:37.948 -07 000000627 INF: FPGA: Recv ZDACR 37057
17-03-17 21:18:37.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:37.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:18:38.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:38.108 -07 000000415 INF: FPGA: Recv ZSGSRD 35695
17-03-17 21:18:38.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:38.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:38.118 -07 000000459 INF: FPGA: Recv ZSGSRD 35695
17-03-17 21:18:38.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:38.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:38.128 -07 000000480 INF: FPGA: Recv ZSGSRD 35692
17-03-17 21:18:38.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:38.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:38.138 -07 000000438 INF: FPGA: Recv ZSGSRD 35700
17-03-17 21:18:38.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:38.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:38.148 -07 000000424 INF: FPGA: Recv ZSGSRD 35696
17-03-17 21:18:38.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:38.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:38.158 -07 000000012 INF: FPGA: Recv ZSGSRD 35697
17-03-17 21:18:38.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:38.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:38.168 -07 000000459 INF: FPGA: Recv ZSGSRD 35695
17-03-17 21:18:38.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:38.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:38.178 -07 000000626 INF: FPGA: Recv ZSGSRD 35692
17-03-17 21:18:38.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:38.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:38.188 -07 000000476 INF: FPGA: Recv ZSGSRD 35696
17-03-17 21:18:38.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:38.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:38.198 -07 000000627 INF: FPGA: Recv ZSGSRD 35695
17-03-17 21:18:38.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:38.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:38.208 -07 000000382 INF: FPGA: Recv ZPIEZORD 31733
17-03-17 21:18:38.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:38.218 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.655 V. Piezo Error = -8.8 V.
17-03-17 21:18:38.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35695 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35695 (-168.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35692 (-168.7 uncal um), Max = 35700 (-168.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:18:38.218 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35695, posNoise = 5, negNoise = 3
17-03-17 21:18:38.218 -07 000000610 INF: Z Motor: After move to -0.169636, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:38.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:18:38.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:38.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:38.218 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:38.218 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:18:38.218 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:38.218 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:18:38.218 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:18:38.218 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:38.218 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:18:38.218 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:18:38.218 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:18:38.218 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:18:38.228 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:18:38.228 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:18:38.228 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:38.228 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:18:38.238 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:18:38.238 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:18:38.238 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:18:38.238 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:18:38.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37234 150\n [Camera]
17-03-17 21:18:38.438 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:18:38.868 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:18:38.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:18:38.868 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:38.868 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:18:38.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:18:38.868 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:38.868 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:38.868 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 21:18:38.868 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:38.868 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:18:39.058 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37234 814
17-03-17 21:18:39.208 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 966
17-03-17 21:18:39.248 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:18:39.248 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 21:18:39.248 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:39.248 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 21:18:39.258 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 21:18:39.258 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:39.258 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:39.258 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:18:39.258 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:39.268 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 21:18:39.418 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:18:39.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:18:39.418 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:39.418 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:39.418 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:18:39.418 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 21:18:39.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:18:39.418 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:39.418 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:39.418 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:18:39.608 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1366
17-03-17 21:18:39.608 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:18:39.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37234 150' command took 2 ms to send, 1366 ms to get response, and 1373 ms overall
17-03-17 21:18:39.608 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:18:39.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169635604411292. ------
17-03-17 21:18:39.618 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:39.618 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17603 mm
17-03-17 21:18:39.618 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:18:39.618 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:39.618 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:18:39.618 -07 000000012 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 21:18:39.618 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 38453, sync = True, waitForSettling = False)
17-03-17 21:18:39.618 -07 000000476 INF: Z Motor: Moving to -0.176027 mm, started at -0.169636 mm, distance = -6.39 um
17-03-17 21:18:39.628 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:18:39.628 -07 000000476 INF: FPGA: Xmit ZDACW 38453\n [Z Motor]
17-03-17 21:18:39.628 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:18:39.638 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:39.638 -07 000000476 INF: FPGA: 'ZDACW 38453' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:18:39.638 -07 000000547 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:18:39.648 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:18:39.648 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:18:39.648 -07 000000012 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:39.648 -07 000000012 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:18:39.648 -07 000000012 INF: Y Motor: Moving 1345 steps-23
17-03-17 21:18:39.658 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:39.658 -07 000000547 INF: FPGA: Recv ZDACR 38453
17-03-17 21:18:39.668 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:18:39.668 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:18:39.668 -07 000000476 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 21:18:39.808 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 21:18:39.808 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:18:39.808 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:39.808 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 21:18:39.808 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:18:39.808 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:39.808 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:39.808 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:39.808 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:18:39.818 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:18:39.848 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:18:39.848 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:18:40.038 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 21:18:40.038 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 21:18:40.078 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:40.078 -07 000000431 INF: FPGA: Recv YRDPOS 139682
17-03-17 21:18:40.088 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:18:40.088 -07 000000012 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:40.088 -07 000000012 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 21:18:40.088 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.841 mm, average velocity = 2.140 mm/sec
17-03-17 21:18:41.038 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:41.038 -07 000000431 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:18:41.048 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:41.048 -07 000000012 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:41.068 -07 000000012 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:18:41.068 -07 000000012 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:18:41.068 -07 000000012 INF: Y Motor: Moved to 68.2046 after 1445 ms (table move)
17-03-17 21:18:41.068 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176027 mm (DAC = 38453)
17-03-17 21:18:41.078 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:41.078 -07 000000438 INF: FPGA: Recv ZSGSRD 36685
17-03-17 21:18:41.088 -07 000000415 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:18:41.088 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:41.088 -07 000000501 INF: FPGA: Recv ZSGSRD 36695
17-03-17 21:18:41.098 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:41.098 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:41.098 -07 000000475 INF: FPGA: Recv ZSGSRD 36696
17-03-17 21:18:41.108 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:41.108 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:41.108 -07 000000626 INF: FPGA: Recv ZSGSRD 36682
17-03-17 21:18:41.118 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:41.118 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:41.118 -07 000000012 INF: FPGA: Recv ZSGSRD 36690
17-03-17 21:18:41.128 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:41.128 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:41.128 -07 000000438 INF: FPGA: Recv ZSGSRD 36697
17-03-17 21:18:41.138 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:41.138 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:41.138 -07 000000512 INF: FPGA: Recv ZSGSRD 36692
17-03-17 21:18:41.148 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:41.148 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:41.148 -07 000000627 INF: FPGA: Recv ZSGSRD 36685
17-03-17 21:18:41.158 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:41.158 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:41.158 -07 000000576 INF: FPGA: Recv ZSGSRD 36693
17-03-17 21:18:41.168 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:41.168 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:41.168 -07 000000501 INF: FPGA: Recv ZSGSRD 36698
17-03-17 21:18:41.178 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:41.178 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:41.178 -07 000000626 INF: FPGA: Recv ZPIEZORD 33078
17-03-17 21:18:41.188 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:41.188 -07 000000415 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.868 V. Piezo Error = -8.0 V.
17-03-17 21:18:41.188 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36691 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36692 (-175.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36682 (-175.1 uncal um), Max = 36698 (-175.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:18:41.188 -07 000000415 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36691, posNoise = 7, negNoise = 9
17-03-17 21:18:41.188 -07 000000415 INF: Z Motor: After move to -0.176027, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:41.188 -07 000000415 INF: Z Motor: Settle wait time = 1448 ms, measure time = 115 ms (allowed 150 ms), total time = 1563 ms
17-03-17 21:18:41.188 -07 000000415 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-17 21:18:41.228 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 21:18:41.228 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:18:41.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:41.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:41.228 -07 000000458 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:41.228 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:18:41.228 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:41.228 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:41.228 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:41.228 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:18:41.238 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:41.238 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:18:41.248 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:18:41.248 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 21:18:41.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:18:41.298 -07 000000458 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:18:41.388 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.997626,
17-03-17 21:18:41.498 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:18:41.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:18:41.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:18:41.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) start.
17-03-17 21:18:41.538 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:18:41.538 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 21:18:41.538 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:18:41.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610875264, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:18:41.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:41.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:18:41.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:18:41.638 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:41.638 -07 000000415 INF: Autofocus start
17-03-17 21:18:41.638 -07 000000415 INF: MeasureProfile start
17-03-17 21:18:41.638 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:41.648 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:18:41.648 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:18:41.648 -07 000000415 INF: MeasureProfile done
17-03-17 21:18:41.648 -07 000000415 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:18:41.648 -07 000000415 INF: Autofocus finished
17-03-17 21:18:41.848 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:18:41.848 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:18:41.848 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.176034119704486. ----------
17-03-17 21:18:41.858 -07 000000610 INF: Cycle	49	Tile	11	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:18:41.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36986, sync = True, waitForSettling = True)
17-03-17 21:18:41.858 -07 000000610 INF: Z Motor: Moving to -0.169311 mm, started at -0.176034 mm, distance = 6.72 um
17-03-17 21:18:41.858 -07 000000610 INF: FPGA: Xmit ZDACW 36986\n [Z Motor]
17-03-17 21:18:41.858 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:18:41.868 -07 000000610 INF: FPGA: 'ZDACW 36986' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:18:41.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:41.868 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:18:41.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:18:41.868 -07 000000476 INF: FPGA: Recv ZDACR 36986
17-03-17 21:18:41.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:41.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:18:42.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:42.028 -07 000000438 INF: FPGA: Recv ZSGSRD 35645
17-03-17 21:18:42.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:42.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:42.038 -07 000000626 INF: FPGA: Recv ZSGSRD 35643
17-03-17 21:18:42.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:42.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:42.048 -07 000000424 INF: FPGA: Recv ZSGSRD 35644
17-03-17 21:18:42.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:42.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:42.058 -07 000000382 INF: FPGA: Recv ZSGSRD 35643
17-03-17 21:18:42.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:42.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:42.068 -07 000000459 INF: FPGA: Recv ZSGSRD 35648
17-03-17 21:18:42.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:42.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:42.078 -07 000000415 INF: FPGA: Recv ZSGSRD 35643
17-03-17 21:18:42.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:42.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:42.088 -07 000000626 INF: FPGA: Recv ZSGSRD 35644
17-03-17 21:18:42.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:42.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:42.098 -07 000000547 INF: FPGA: Recv ZSGSRD 35645
17-03-17 21:18:42.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:42.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:42.108 -07 000000501 INF: FPGA: Recv ZSGSRD 35644
17-03-17 21:18:42.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:42.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:42.118 -07 000000475 INF: FPGA: Recv ZSGSRD 35640
17-03-17 21:18:42.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:42.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:42.128 -07 000000438 INF: FPGA: Recv ZPIEZORD 31676
17-03-17 21:18:42.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:42.138 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.644 V. Piezo Error = -8.8 V.
17-03-17 21:18:42.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35644 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35644 (-168.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35640 (-168.4 uncal um), Max = 35648 (-168.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:18:42.138 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35644, posNoise = 4, negNoise = 4
17-03-17 21:18:42.138 -07 000000610 INF: Z Motor: After move to -0.169311, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:42.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:18:42.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:42.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:42.138 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:42.138 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:42.138 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:18:42.138 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:42.138 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:18:42.138 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:18:42.138 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:42.138 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:18:42.138 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:18:42.138 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:18:42.148 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:42.148 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:18:42.148 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:18:42.148 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:18:42.148 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:18:42.148 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:18:42.148 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:18:42.148 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:18:42.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37163 150\n [Camera]
17-03-17 21:18:42.358 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:18:42.788 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:18:42.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:18:42.788 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:42.788 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:42.788 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:18:42.788 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:18:42.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:18:42.788 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:42.788 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:42.788 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 21:18:42.978 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37163 814
17-03-17 21:18:43.128 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:18:43.168 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:18:43.168 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 21:18:43.168 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:43.168 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:18:43.168 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:18:43.168 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:43.168 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:43.178 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:43.178 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:18:43.178 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:18:43.328 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:18:43.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:18:43.328 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:43.338 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:43.338 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:18:43.338 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:18:43.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:18:43.338 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:43.338 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:43.338 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:18:43.528 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:18:43.528 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:18:43.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37163 150' command took 2 ms to send, 1361 ms to get response, and 1370 ms overall
17-03-17 21:18:43.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:18:43.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.169307969592063. ------
17-03-17 21:18:43.528 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:43.528 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17589 mm
17-03-17 21:18:43.528 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:18:43.648 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:43.648 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 118 ms overall
17-03-17 21:18:43.648 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:18:43.648 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38423, sync = True, waitForSettling = False)
17-03-17 21:18:43.648 -07 000000627 INF: Z Motor: Moving to -0.175889 mm, started at -0.169308 mm, distance = -6.58 um
17-03-17 21:18:43.648 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:18:43.648 -07 000000576 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 21:18:43.658 -07 000000627 INF: FPGA: Xmit ZDACW 38423\n [Z Motor]
17-03-17 21:18:43.658 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:18:43.668 -07 000000627 INF: FPGA: 'ZDACW 38423' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:43.668 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:43.668 -07 000000569 INF: FPGA: Recv ZDACR 38423
17-03-17 21:18:43.678 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:43.678 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:43.678 -07 000000627 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 21:18:43.678 -07 000000429 INF: FPGA: Recv YRDPOS 139683
17-03-17 21:18:43.688 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:18:43.688 -07 000000576 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:43.688 -07 000000576 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:18:43.688 -07 000000576 INF: Y Motor: Moving 1341 steps-17
17-03-17 21:18:43.688 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:18:43.738 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:18:43.738 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:18:43.738 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:43.738 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 21:18:43.738 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:18:43.738 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:43.738 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:43.748 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:18:43.748 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 21:18:43.748 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 21:18:43.848 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:18:43.848 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-17 21:18:44.058 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 21:18:44.058 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 21:18:44.098 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:44.098 -07 000000547 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:18:44.108 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:18:44.108 -07 000000576 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:44.108 -07 000000576 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 21:18:44.108 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.217 mm/sec
17-03-17 21:18:45.058 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:45.058 -07 000000431 INF: FPGA: Recv YRDPOS 141367
17-03-17 21:18:45.068 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:45.068 -07 000000576 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:45.088 -07 000000576 INF: Y Motor: After move to 69.042610, error = -0.015755, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:18:45.088 -07 000000576 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:18:45.088 -07 000000576 INF: Y Motor: Moved to 69.0269 after 1434 ms (table move)
17-03-17 21:18:45.088 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175889 mm (DAC = 38423)
17-03-17 21:18:45.088 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:45.088 -07 000000547 INF: FPGA: Recv ZSGSRD 36669
17-03-17 21:18:45.098 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:18:45.098 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:45.098 -07 000000475 INF: FPGA: Recv ZSGSRD 36677
17-03-17 21:18:45.108 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:45.108 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:45.108 -07 000000480 INF: FPGA: Recv ZSGSRD 36657
17-03-17 21:18:45.118 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:18:45.118 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:45.118 -07 000000626 INF: FPGA: Recv ZSGSRD 36670
17-03-17 21:18:45.128 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:45.128 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:45.128 -07 000000012 INF: FPGA: Recv ZSGSRD 36667
17-03-17 21:18:45.138 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:45.138 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:45.138 -07 000000576 INF: FPGA: Recv ZSGSRD 36668
17-03-17 21:18:45.148 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:45.148 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:45.148 -07 000000458 INF: FPGA: Recv ZSGSRD 36667
17-03-17 21:18:45.158 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:45.158 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:45.158 -07 000000475 INF: FPGA: Recv ZSGSRD 36670
17-03-17 21:18:45.168 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:45.168 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:45.168 -07 000000382 INF: FPGA: Recv ZSGSRD 36674
17-03-17 21:18:45.178 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:45.178 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:45.178 -07 000000012 INF: FPGA: Recv ZSGSRD 36674
17-03-17 21:18:45.188 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:45.188 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:45.188 -07 000000431 INF: FPGA: Recv ZPIEZORD 33024
17-03-17 21:18:45.198 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:45.198 -07 000000459 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.863 V. Piezo Error = -8.1 V.
17-03-17 21:18:45.198 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36669 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36670 (-175.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36657 (-174.9 uncal um), Max = 36677 (-175.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 21:18:45.198 -07 000000459 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36669, posNoise = 8, negNoise = 12
17-03-17 21:18:45.198 -07 000000459 INF: Z Motor: After move to -0.175889, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:45.198 -07 000000459 INF: Z Motor: Settle wait time = 1437 ms, measure time = 104 ms (allowed 150 ms), total time = 1541 ms
17-03-17 21:18:45.198 -07 000000459 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:18:45.248 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1712 ms
17-03-17 21:18:45.248 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:18:45.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:45.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:45.248 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:45.248 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:45.248 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:18:45.248 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:45.248 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:18:45.248 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:18:45.258 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:45.258 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:18:45.268 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:18:45.268 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:18:45.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:18:45.308 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:18:45.508 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:18:45.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:18:45.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:18:45.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:18:45.548 -07 000000438 INF: FPGA: Recv @CAMSNAP 281
17-03-17 21:18:45.558 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 21:18:45.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 286 ms overall
17-03-17 21:18:45.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:18:45.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:45.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:18:45.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 21:18:45.658 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:45.658 -07 000000501 INF: Autofocus start
17-03-17 21:18:45.658 -07 000000501 INF: MeasureProfile start
17-03-17 21:18:45.658 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:45.668 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:18:45.668 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:18:45.668 -07 000000501 INF: MeasureProfile done
17-03-17 21:18:45.668 -07 000000501 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:18:45.668 -07 000000501 INF: Autofocus finished
17-03-17 21:18:45.868 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:18:45.868 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:18:45.868 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02685546875, Z-position -0.175892787037367. ----------
17-03-17 21:18:45.868 -07 000000610 INF: Cycle	49	Tile	12	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:18:45.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36920, sync = True, waitForSettling = True)
17-03-17 21:18:45.878 -07 000000610 INF: Z Motor: Moving to -0.169009 mm, started at -0.175893 mm, distance = 6.88 um
17-03-17 21:18:45.878 -07 000000610 INF: FPGA: Xmit ZDACW 36920\n [Z Motor]
17-03-17 21:18:45.878 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 21:18:45.888 -07 000000610 INF: FPGA: 'ZDACW 36920' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:18:45.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:45.888 -07 000000626 INF: FPGA: Recv ZDACR 36920
17-03-17 21:18:45.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:45.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:18:46.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:46.048 -07 000000475 INF: FPGA: Recv ZSGSRD 35602
17-03-17 21:18:46.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:46.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:46.058 -07 000000480 INF: FPGA: Recv ZSGSRD 35598
17-03-17 21:18:46.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:46.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:46.068 -07 000000576 INF: FPGA: Recv ZSGSRD 35602
17-03-17 21:18:46.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:46.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:46.078 -07 000000431 INF: FPGA: Recv ZSGSRD 35598
17-03-17 21:18:46.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:46.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:46.088 -07 000000627 INF: FPGA: Recv ZSGSRD 35595
17-03-17 21:18:46.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:46.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:46.098 -07 000000382 INF: FPGA: Recv ZSGSRD 35601
17-03-17 21:18:46.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:46.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:46.108 -07 000000429 INF: FPGA: Recv ZSGSRD 35599
17-03-17 21:18:46.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:46.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:46.118 -07 000000512 INF: FPGA: Recv ZSGSRD 35598
17-03-17 21:18:46.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:46.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:46.128 -07 000000415 INF: FPGA: Recv ZSGSRD 35598
17-03-17 21:18:46.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:46.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:46.138 -07 000000626 INF: FPGA: Recv ZSGSRD 35601
17-03-17 21:18:46.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:46.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:46.148 -07 000000476 INF: FPGA: Recv ZPIEZORD 31625
17-03-17 21:18:46.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:46.158 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.634 V. Piezo Error = -8.8 V.
17-03-17 21:18:46.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35599 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35598 (-168.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35595 (-168.1 uncal um), Max = 35602 (-168.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:18:46.158 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35599, posNoise = 3, negNoise = 4
17-03-17 21:18:46.158 -07 000000610 INF: Z Motor: After move to -0.169009, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:46.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:18:46.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:46.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:46.158 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:46.158 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:46.158 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:18:46.158 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:18:46.158 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:18:46.158 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:46.158 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 21:18:46.158 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:18:46.158 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:46.158 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:18:46.168 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:18:46.168 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:18:46.168 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:18:46.168 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:18:46.178 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:18:46.178 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:18:46.178 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:18:46.178 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:18:46.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 37097 150\n [Camera]
17-03-17 21:18:46.378 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:18:46.758 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.999021,
17-03-17 21:18:46.808 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:18:46.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:18:46.808 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:46.808 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:18:46.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:18:46.818 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:46.818 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:46.818 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-17 21:18:46.818 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:46.818 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:18:46.868 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:18:46.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:18:46.998 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37097 814
17-03-17 21:18:47.148 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:18:47.188 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:18:47.188 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:18:47.188 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:47.198 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:47.198 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:18:47.198 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 21:18:47.198 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:47.198 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:18:47.208 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:47.208 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:18:47.358 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:18:47.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:18:47.358 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:47.358 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:18:47.358 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:47.358 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 21:18:47.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:18:47.358 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:47.358 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:47.358 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:18:47.548 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:18:47.548 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:18:47.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 37097 150' command took 2 ms to send, 1364 ms to get response, and 1370 ms overall
17-03-17 21:18:47.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:18:47.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02685546875, Z-Position -0.169018880045683. ------
17-03-17 21:18:47.548 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17540 mm
17-03-17 21:18:47.548 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:18:47.558 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:47.678 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:47.678 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 120 ms overall
17-03-17 21:18:47.678 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:18:47.678 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:18:47.678 -07 000000431 INF: Y Motor: Moving to 69.8726 mm, started at 69.0269 mm, delta = 0.8458 mm
17-03-17 21:18:47.678 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38317, sync = True, waitForSettling = False)
17-03-17 21:18:47.678 -07 000000501 INF: Z Motor: Moving to -0.175404 mm, started at -0.169019 mm, distance = -6.39 um
17-03-17 21:18:47.688 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:47.688 -07 000000576 INF: FPGA: Recv YRDPOS 141368
17-03-17 21:18:47.698 -07 000000501 INF: FPGA: Xmit ZDACW 38317\n [Z Motor]
17-03-17 21:18:47.698 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:18:47.698 -07 000000431 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:47.698 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:18:47.698 -07 000000431 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:18:47.698 -07 000000431 INF: Y Motor: Moving 1352 steps-32
17-03-17 21:18:47.708 -07 000000501 INF: FPGA: 'ZDACW 38317' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:18:47.708 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:47.708 -07 000000476 INF: FPGA: Recv ZDACR 38317
17-03-17 21:18:47.718 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:18:47.718 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:47.718 -07 000000501 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 21:18:47.748 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:18:47.748 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:18:47.748 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:47.748 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 21:18:47.748 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:18:47.748 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:47.758 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:18:47.758 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:18:47.758 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:47.758 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:18:47.878 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:18:47.878 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:18:48.088 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 21:18:48.088 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 21:18:48.128 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:48.128 -07 000000458 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:18:48.138 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:18:48.138 -07 000000431 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:48.138 -07 000000431 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:18:48.138 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.846 mm, average velocity = 2.147 mm/sec
17-03-17 21:18:49.088 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:49.088 -07 000000458 INF: FPGA: Recv YRDPOS 143079
17-03-17 21:18:49.098 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:49.098 -07 000000431 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:49.118 -07 000000431 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:18:49.118 -07 000000431 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:18:49.118 -07 000000431 INF: Y Motor: Moved to 69.8628 after 1442 ms (table move)
17-03-17 21:18:49.118 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175404 mm (DAC = 38317)
17-03-17 21:18:49.118 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:49.128 -07 000000626 INF: FPGA: Recv ZSGSRD 36597
17-03-17 21:18:49.128 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:18:49.128 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:49.128 -07 000000438 INF: FPGA: Recv ZSGSRD 36597
17-03-17 21:18:49.138 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:49.138 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:49.138 -07 000000429 INF: FPGA: Recv ZSGSRD 36590
17-03-17 21:18:49.148 -07 000000459 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:49.148 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:49.148 -07 000000382 INF: FPGA: Recv ZSGSRD 36596
17-03-17 21:18:49.158 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:49.158 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:49.158 -07 000000569 INF: FPGA: Recv ZSGSRD 36594
17-03-17 21:18:49.168 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:49.168 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:49.168 -07 000000627 INF: FPGA: Recv ZSGSRD 36589
17-03-17 21:18:49.178 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:49.178 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:49.178 -07 000000608 INF: FPGA: Recv ZSGSRD 36598
17-03-17 21:18:49.188 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:49.188 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:49.188 -07 000000429 INF: FPGA: Recv ZSGSRD 36589
17-03-17 21:18:49.198 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:49.198 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:49.198 -07 000000501 INF: FPGA: Recv ZSGSRD 36592
17-03-17 21:18:49.208 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:49.208 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:49.208 -07 000000512 INF: FPGA: Recv ZSGSRD 36599
17-03-17 21:18:49.218 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:49.218 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:49.218 -07 000000476 INF: FPGA: Recv ZPIEZORD 32961
17-03-17 21:18:49.228 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:49.228 -07 000000459 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.847 V. Piezo Error = -8.1 V.
17-03-17 21:18:49.228 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36594 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36595 (-174.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36589 (-174.5 uncal um), Max = 36599 (-174.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:18:49.228 -07 000000459 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36594, posNoise = 5, negNoise = 5
17-03-17 21:18:49.228 -07 000000459 INF: Z Motor: After move to -0.175404, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:49.228 -07 000000459 INF: Z Motor: Settle wait time = 1445 ms, measure time = 103 ms (allowed 150 ms), total time = 1548 ms
17-03-17 21:18:49.228 -07 000000459 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:18:49.278 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1720 ms
17-03-17 21:18:49.278 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:18:49.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:49.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:49.278 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:49.278 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:49.278 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:18:49.278 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:49.278 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:18:49.278 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:18:49.288 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:49.288 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:18:49.288 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:18:49.288 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 21:18:49.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:18:49.338 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:18:49.538 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:18:49.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:18:49.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:18:49.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:18:49.578 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:18:49.578 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 21:18:49.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 21:18:49.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:18:49.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:49.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:18:49.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:18:49.678 -07 000000459 INF: Autofocus start
17-03-17 21:18:49.678 -07 000000459 INF: MeasureProfile start
17-03-17 21:18:49.678 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:49.678 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:49.688 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:18:49.688 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:18:49.688 -07 000000459 INF: MeasureProfile done
17-03-17 21:18:49.688 -07 000000459 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:18:49.688 -07 000000459 INF: Autofocus finished
17-03-17 21:18:49.888 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:18:49.888 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:18:49.888 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.175410971126735. ----------
17-03-17 21:18:49.888 -07 000000610 INF: Cycle	49	Tile	13	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:18:49.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36814, sync = True, waitForSettling = True)
17-03-17 21:18:49.898 -07 000000610 INF: Z Motor: Moving to -0.168524 mm, started at -0.175411 mm, distance = 6.89 um
17-03-17 21:18:49.898 -07 000000610 INF: FPGA: Xmit ZDACW 36814\n [Z Motor]
17-03-17 21:18:49.898 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:18:49.908 -07 000000610 INF: FPGA: 'ZDACW 36814' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:18:49.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:49.908 -07 000000431 INF: FPGA: Recv ZDACR 36814
17-03-17 21:18:49.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:49.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:18:50.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:50.068 -07 000000415 INF: FPGA: Recv ZSGSRD 35519
17-03-17 21:18:50.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:50.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:50.078 -07 000000458 INF: FPGA: Recv ZSGSRD 35527
17-03-17 21:18:50.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:50.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:50.088 -07 000000576 INF: FPGA: Recv ZSGSRD 35523
17-03-17 21:18:50.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:50.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:50.098 -07 000000480 INF: FPGA: Recv ZSGSRD 35527
17-03-17 21:18:50.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:50.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:50.108 -07 000000501 INF: FPGA: Recv ZSGSRD 35525
17-03-17 21:18:50.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:50.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:50.118 -07 000000415 INF: FPGA: Recv ZSGSRD 35519
17-03-17 21:18:50.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:50.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:50.128 -07 000000608 INF: FPGA: Recv ZSGSRD 35531
17-03-17 21:18:50.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:50.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:50.138 -07 000000424 INF: FPGA: Recv ZSGSRD 35522
17-03-17 21:18:50.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:50.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:50.148 -07 000000459 INF: FPGA: Recv ZSGSRD 35524
17-03-17 21:18:50.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:50.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:50.158 -07 000000431 INF: FPGA: Recv ZSGSRD 35529
17-03-17 21:18:50.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:50.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:50.168 -07 000000627 INF: FPGA: Recv ZPIEZORD 31509
17-03-17 21:18:50.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:50.178 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.617 V. Piezo Error = -8.9 V.
17-03-17 21:18:50.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35525 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35524 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35519 (-167.6 uncal um), Max = 35531 (-167.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:18:50.178 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35525, posNoise = 6, negNoise = 6
17-03-17 21:18:50.178 -07 000000610 INF: Z Motor: After move to -0.168524, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:50.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:18:50.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:50.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:50.178 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:50.178 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:50.178 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:18:50.178 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:18:50.178 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:18:50.178 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:50.178 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:18:50.178 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:18:50.178 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:18:50.178 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:18:50.188 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:50.188 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:18:50.188 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:18:50.188 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:18:50.188 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:18:50.198 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:18:50.198 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:18:50.198 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:18:50.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 36991 150\n [Camera]
17-03-17 21:18:50.398 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:18:50.828 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:18:50.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:18:50.828 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:50.828 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:18:50.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:18:50.828 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:50.828 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:50.828 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:18:50.838 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:50.838 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:18:51.018 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36991 814
17-03-17 21:18:51.168 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:18:51.208 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:18:51.208 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:18:51.208 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:51.218 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:51.218 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:18:51.218 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 21:18:51.218 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:18:51.218 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:51.218 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:51.228 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:18:51.378 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:18:51.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:18:51.378 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:51.378 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:18:51.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:18:51.378 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:51.378 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:51.378 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:18:51.388 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:51.388 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 21:18:51.568 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:18:51.568 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:18:51.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 36991 150' command took 2 ms to send, 1362 ms to get response, and 1370 ms overall
17-03-17 21:18:51.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:18:51.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.168543488347193. ------
17-03-17 21:18:51.568 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:51.568 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17486 mm
17-03-17 21:18:51.568 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:18:51.578 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:51.578 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38197, sync = True, waitForSettling = False)
17-03-17 21:18:51.578 -07 000000569 INF: Z Motor: Moving to -0.174855 mm, started at -0.168543 mm, distance = -6.31 um
17-03-17 21:18:51.578 -07 000000569 INF: FPGA: Xmit ZDACW 38197\n [Z Motor]
17-03-17 21:18:51.578 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:18:51.578 -07 000000627 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 21:18:51.578 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:18:51.578 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:18:51.588 -07 000000569 INF: FPGA: 'ZDACW 38197' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:51.588 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:51.588 -07 000000458 INF: FPGA: Recv ZDACR 38197
17-03-17 21:18:51.598 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:51.598 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:51.598 -07 000000569 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-17 21:18:51.598 -07 000000429 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:18:51.608 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:18:51.608 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:18:51.608 -07 000000627 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:51.608 -07 000000627 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:18:51.608 -07 000000627 INF: Y Motor: Moving 1343 steps-20
17-03-17 21:18:51.618 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:18:51.778 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:18:51.778 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:18:51.778 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:51.778 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:18:51.778 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:18:51.778 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:51.788 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:51.788 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:51.788 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 21:18:51.788 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:18:51.818 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:18:51.818 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 202 ms to get response, and 240 ms overall
17-03-17 21:18:51.868 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:18:51.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:18:51.988 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 21:18:51.988 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 21:18:52.028 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:52.028 -07 000000459 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:18:52.038 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:18:52.038 -07 000000627 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:52.038 -07 000000627 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:18:52.038 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.840 mm, average velocity = 2.181 mm/sec
17-03-17 21:18:52.128 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.999021,
17-03-17 21:18:52.988 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:52.988 -07 000000429 INF: FPGA: Recv YRDPOS 144769
17-03-17 21:18:52.998 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:52.998 -07 000000627 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:53.018 -07 000000627 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:18:53.018 -07 000000627 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:18:53.018 -07 000000627 INF: Y Motor: Moved to 70.6880 after 1444 ms (table move)
17-03-17 21:18:53.018 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174855 mm (DAC = 38197)
17-03-17 21:18:53.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:53.028 -07 000000547 INF: FPGA: Recv ZSGSRD 36511
17-03-17 21:18:53.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 21:18:53.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:53.028 -07 000000512 INF: FPGA: Recv ZSGSRD 36503
17-03-17 21:18:53.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:18:53.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:53.038 -07 000000459 INF: FPGA: Recv ZSGSRD 36509
17-03-17 21:18:53.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:53.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:53.048 -07 000000424 INF: FPGA: Recv ZSGSRD 36511
17-03-17 21:18:53.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:53.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:53.058 -07 000000569 INF: FPGA: Recv ZSGSRD 36503
17-03-17 21:18:53.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:53.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:53.068 -07 000000458 INF: FPGA: Recv ZSGSRD 36511
17-03-17 21:18:53.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:53.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:53.078 -07 000000480 INF: FPGA: Recv ZSGSRD 36504
17-03-17 21:18:53.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:53.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:53.088 -07 000000459 INF: FPGA: Recv ZSGSRD 36506
17-03-17 21:18:53.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:53.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:53.098 -07 000000627 INF: FPGA: Recv ZSGSRD 36508
17-03-17 21:18:53.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:53.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:53.108 -07 000000476 INF: FPGA: Recv ZSGSRD 36504
17-03-17 21:18:53.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:53.118 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:53.118 -07 000000576 INF: FPGA: Recv ZPIEZORD 32854
17-03-17 21:18:53.128 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:53.128 -07 000000431 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -8.1 V.
17-03-17 21:18:53.128 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36507 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36507 (-174.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36503 (-173.9 uncal um), Max = 36511 (-174.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:18:53.128 -07 000000431 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36507, posNoise = 4, negNoise = 4
17-03-17 21:18:53.128 -07 000000431 INF: Z Motor: After move to -0.174855, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:53.128 -07 000000431 INF: Z Motor: Settle wait time = 1448 ms, measure time = 102 ms (allowed 150 ms), total time = 1550 ms
17-03-17 21:18:53.128 -07 000000431 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:18:53.178 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 21:18:53.178 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:18:53.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:53.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:53.178 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:53.178 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:53.178 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:18:53.178 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:53.178 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:53.178 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:18:53.188 -07 000000476 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:53.188 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:18:53.188 -07 000000476 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:18:53.188 -07 000000476 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:18:53.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:18:53.238 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:18:53.438 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:18:53.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:18:53.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:18:53.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 21:18:53.478 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:18:53.478 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 21:18:53.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 21:18:53.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:18:53.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:53.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:18:53.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 21:18:53.578 -07 000000480 INF: Autofocus start
17-03-17 21:18:53.578 -07 000000480 INF: MeasureProfile start
17-03-17 21:18:53.578 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:53.578 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:53.588 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:18:53.588 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:18:53.598 -07 000000480 INF: MeasureProfile done
17-03-17 21:18:53.598 -07 000000480 INF: X=32  Z correction [um]=0.09220707
17-03-17 21:18:53.598 -07 000000480 INF: Autofocus finished
17-03-17 21:18:53.788 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:18:53.788 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:18:53.798 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174852064670402. ----------
17-03-17 21:18:53.798 -07 000000610 INF: Cycle	49	Tile	14	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:18:53.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36730, sync = True, waitForSettling = True)
17-03-17 21:18:53.798 -07 000000610 INF: Z Motor: Moving to -0.168139 mm, started at -0.174852 mm, distance = 6.71 um
17-03-17 21:18:53.798 -07 000000610 INF: FPGA: Xmit ZDACW 36730\n [Z Motor]
17-03-17 21:18:53.798 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:18:53.808 -07 000000610 INF: FPGA: 'ZDACW 36730' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:18:53.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:53.808 -07 000000012 INF: FPGA: Recv ZDACR 36730
17-03-17 21:18:53.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:53.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:18:53.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:53.968 -07 000000627 INF: FPGA: Recv ZSGSRD 35462
17-03-17 21:18:53.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:53.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:53.978 -07 000000576 INF: FPGA: Recv ZSGSRD 35467
17-03-17 21:18:53.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:53.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:53.988 -07 000000415 INF: FPGA: Recv ZSGSRD 35466
17-03-17 21:18:53.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:53.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:53.998 -07 000000429 INF: FPGA: Recv ZSGSRD 35462
17-03-17 21:18:54.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:54.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:54.008 -07 000000431 INF: FPGA: Recv ZSGSRD 35461
17-03-17 21:18:54.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:54.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:54.018 -07 000000476 INF: FPGA: Recv ZSGSRD 35466
17-03-17 21:18:54.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:54.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:54.028 -07 000000501 INF: FPGA: Recv ZSGSRD 35465
17-03-17 21:18:54.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:54.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:54.038 -07 000000569 INF: FPGA: Recv ZSGSRD 35463
17-03-17 21:18:54.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:54.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:54.048 -07 000000458 INF: FPGA: Recv ZSGSRD 35462
17-03-17 21:18:54.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:54.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:54.058 -07 000000547 INF: FPGA: Recv ZSGSRD 35463
17-03-17 21:18:54.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:54.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:54.068 -07 000000626 INF: FPGA: Recv ZPIEZORD 31443
17-03-17 21:18:54.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:54.078 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.605 V. Piezo Error = -8.9 V.
17-03-17 21:18:54.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35464 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35463 (-167.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35461 (-167.3 uncal um), Max = 35467 (-167.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:18:54.078 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35464, posNoise = 3, negNoise = 3
17-03-17 21:18:54.078 -07 000000610 INF: Z Motor: After move to -0.168139, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:54.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:18:54.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:54.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:54.078 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:54.078 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:18:54.078 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:18:54.078 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:54.078 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:54.078 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:18:54.078 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:18:54.078 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:18:54.078 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:18:54.078 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:18:54.088 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:18:54.088 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:18:54.088 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:18:54.088 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:18:54.098 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:18:54.098 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:18:54.098 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:18:54.098 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:18:54.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 36907 150\n [Camera]
17-03-17 21:18:54.298 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:18:54.728 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:18:54.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:18:54.728 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:54.728 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:54.728 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:18:54.738 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:18:54.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:18:54.738 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:54.738 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:54.738 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:18:54.928 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36907 814
17-03-17 21:18:55.068 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:18:55.128 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:18:55.128 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:18:55.128 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:55.128 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 21:18:55.128 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:18:55.128 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:55.128 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:55.128 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:18:55.128 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:18:55.138 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:18:55.278 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:18:55.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:18:55.278 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:55.278 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:55.278 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:18:55.278 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:18:55.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:18:55.288 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:55.288 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:55.288 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:18:55.468 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:18:55.468 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:18:55.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 36907 150' command took 2 ms to send, 1358 ms to get response, and 1369 ms overall
17-03-17 21:18:55.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:18:55.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.168151611406546. ------
17-03-17 21:18:55.478 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:55.478 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17455 mm
17-03-17 21:18:55.478 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:18:55.598 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:55.598 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-17 21:18:55.598 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:18:55.598 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38130, sync = True, waitForSettling = False)
17-03-17 21:18:55.598 -07 000000459 INF: Z Motor: Moving to -0.174548 mm, started at -0.168152 mm, distance = -6.40 um
17-03-17 21:18:55.598 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:18:55.598 -07 000000512 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 21:18:55.608 -07 000000459 INF: FPGA: Xmit ZDACW 38130\n [Z Motor]
17-03-17 21:18:55.608 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 21:18:55.618 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:55.618 -07 000000459 INF: FPGA: 'ZDACW 38130' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 21:18:55.618 -07 000000480 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:18:55.628 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 21:18:55.628 -07 000000512 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:55.628 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:55.628 -07 000000569 INF: FPGA: Recv ZDACR 38130
17-03-17 21:18:55.628 -07 000000512 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:18:55.628 -07 000000512 INF: Y Motor: Moving 1351 steps-30
17-03-17 21:18:55.638 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:18:55.638 -07 000000459 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 21:18:55.638 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:18:55.678 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:18:55.678 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:18:55.678 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:55.678 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 21:18:55.678 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:18:55.678 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:55.678 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:55.688 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:18:55.688 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:18:55.688 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:18:55.808 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:18:55.808 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-17 21:18:56.008 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 21:18:56.018 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 385 ms overall
17-03-17 21:18:56.048 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:56.058 -07 000000476 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:18:56.058 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 21:18:56.058 -07 000000512 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:56.058 -07 000000512 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:18:56.058 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.845 mm, average velocity = 2.188 mm/sec
17-03-17 21:18:56.868 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:18:56.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:18:57.008 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:57.008 -07 000000476 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:18:57.018 -07 000000512 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:57.018 -07 000000512 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:57.038 -07 000000512 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:18:57.038 -07 000000512 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:18:57.038 -07 000000512 INF: Y Motor: Moved to 71.5186 after 1434 ms (table move)
17-03-17 21:18:57.038 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174548 mm (DAC = 38130)
17-03-17 21:18:57.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:57.038 -07 000000459 INF: FPGA: Recv ZSGSRD 36464
17-03-17 21:18:57.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:18:57.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:57.048 -07 000000547 INF: FPGA: Recv ZSGSRD 36457
17-03-17 21:18:57.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:57.058 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:57.058 -07 000000424 INF: FPGA: Recv ZSGSRD 36461
17-03-17 21:18:57.068 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:57.068 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:57.068 -07 000000438 INF: FPGA: Recv ZSGSRD 36464
17-03-17 21:18:57.078 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:57.078 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:57.078 -07 000000012 INF: FPGA: Recv ZSGSRD 36463
17-03-17 21:18:57.088 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:57.088 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:57.088 -07 000000626 INF: FPGA: Recv ZSGSRD 36466
17-03-17 21:18:57.098 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:57.098 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:57.098 -07 000000547 INF: FPGA: Recv ZSGSRD 36462
17-03-17 21:18:57.108 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:57.108 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:57.108 -07 000000424 INF: FPGA: Recv ZSGSRD 36453
17-03-17 21:18:57.118 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:57.118 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:57.118 -07 000000608 INF: FPGA: Recv ZSGSRD 36458
17-03-17 21:18:57.128 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:57.128 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:57.128 -07 000000012 INF: FPGA: Recv ZSGSRD 36455
17-03-17 21:18:57.138 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:57.138 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:57.138 -07 000000576 INF: FPGA: Recv ZPIEZORD 32758
17-03-17 21:18:57.148 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:57.148 -07 000000431 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.818 V. Piezo Error = -8.2 V.
17-03-17 21:18:57.148 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.5 um, Read 10 ADC samples: Avg = 36460 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36462 (-173.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36453 (-173.6 uncal um), Max = 36466 (-173.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:18:57.148 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36460, posNoise = 6, negNoise = 7
17-03-17 21:18:57.148 -07 000000431 INF: Z Motor: After move to -0.174548, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:57.148 -07 000000431 INF: Z Motor: Settle wait time = 1437 ms, measure time = 104 ms (allowed 150 ms), total time = 1541 ms
17-03-17 21:18:57.148 -07 000000431 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:18:57.198 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1716 ms
17-03-17 21:18:57.198 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:18:57.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:57.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:57.198 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:57.198 -07 000000476 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:57.198 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:18:57.198 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:57.198 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:18:57.198 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:18:57.208 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:18:57.208 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:18:57.218 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:18:57.218 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 21:18:57.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:18:57.268 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:18:57.468 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:18:57.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:18:57.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:18:57.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:18:57.498 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.005817,
17-03-17 21:18:57.508 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:18:57.508 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 21:18:57.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:18:57.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:18:57.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:57.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:18:57.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:18:57.608 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:57.608 -07 000000626 INF: Autofocus start
17-03-17 21:18:57.608 -07 000000626 INF: MeasureProfile start
17-03-17 21:18:57.618 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:57.618 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:18:57.618 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:18:57.618 -07 000000626 INF: MeasureProfile done
17-03-17 21:18:57.618 -07 000000626 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:18:57.618 -07 000000626 INF: Autofocus finished
17-03-17 21:18:57.818 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:18:57.818 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 21:18:57.818 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.174550126699739. ----------
17-03-17 21:18:57.828 -07 000000610 INF: Cycle	49	Tile	15	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:18:57.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36627, sync = True, waitForSettling = True)
17-03-17 21:18:57.828 -07 000000610 INF: Z Motor: Moving to -0.167668 mm, started at -0.174550 mm, distance = 6.88 um
17-03-17 21:18:57.838 -07 000000610 INF: FPGA: Xmit ZDACW 36627\n [Z Motor]
17-03-17 21:18:57.838 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:18:57.848 -07 000000610 INF: FPGA: 'ZDACW 36627' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:18:57.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:57.848 -07 000000475 INF: FPGA: Recv ZDACR 36627
17-03-17 21:18:57.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:57.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:18:58.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:58.008 -07 000000480 INF: FPGA: Recv ZSGSRD 35387
17-03-17 21:18:58.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:18:58.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:58.018 -07 000000475 INF: FPGA: Recv ZSGSRD 35400
17-03-17 21:18:58.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:58.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:58.028 -07 000000576 INF: FPGA: Recv ZSGSRD 35387
17-03-17 21:18:58.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:58.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:58.038 -07 000000424 INF: FPGA: Recv ZSGSRD 35387
17-03-17 21:18:58.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:58.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:58.048 -07 000000012 INF: FPGA: Recv ZSGSRD 35390
17-03-17 21:18:58.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:58.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:58.058 -07 000000415 INF: FPGA: Recv ZSGSRD 35385
17-03-17 21:18:58.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:58.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:58.068 -07 000000438 INF: FPGA: Recv ZSGSRD 35398
17-03-17 21:18:58.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:58.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:58.078 -07 000000476 INF: FPGA: Recv ZSGSRD 35387
17-03-17 21:18:58.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:58.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:58.088 -07 000000608 INF: FPGA: Recv ZSGSRD 35382
17-03-17 21:18:58.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:58.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:18:58.098 -07 000000382 INF: FPGA: Recv ZSGSRD 35388
17-03-17 21:18:58.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:58.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:18:58.108 -07 000000547 INF: FPGA: Recv ZPIEZORD 31341
17-03-17 21:18:58.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:18:58.118 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.589 V. Piezo Error = -8.9 V.
17-03-17 21:18:58.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.7 um, Read 10 ADC samples: Avg = 35389 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35387 (-166.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35382 (-166.8 uncal um), Max = 35400 (-166.9 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:18:58.118 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35389, posNoise = 11, negNoise = 7
17-03-17 21:18:58.118 -07 000000610 INF: Z Motor: After move to -0.167668, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:18:58.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 21:18:58.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:18:58.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:18:58.118 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:18:58.118 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:18:58.118 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:18:58.118 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:18:58.118 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:18:58.118 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:18:58.118 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:18:58.118 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:18:58.118 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:18:58.118 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:18:58.128 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:18:58.128 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:18:58.128 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:18:58.128 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:18:58.138 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:18:58.138 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:18:58.138 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:18:58.138 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:18:58.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 36804 150\n [Camera]
17-03-17 21:18:58.338 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:18:58.768 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:18:58.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:18:58.768 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:58.768 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:18:58.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:18:58.768 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:58.778 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:58.778 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-17 21:18:58.778 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:58.778 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:18:58.958 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36804 814
17-03-17 21:18:59.108 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:18:59.148 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:18:59.148 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:18:59.148 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:59.148 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:59.148 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:18:59.148 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 21:18:59.148 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:59.158 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:59.158 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:18:59.158 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:18:59.318 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1171
17-03-17 21:18:59.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1171
17-03-17 21:18:59.318 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:18:59.318 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1171
17-03-17 21:18:59.318 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:18:59.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1171
17-03-17 21:18:59.318 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:18:59.318 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:18:59.318 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:18:59.318 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:18:59.508 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:18:59.508 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:18:59.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 36804 150' command took 2 ms to send, 1364 ms to get response, and 1370 ms overall
17-03-17 21:18:59.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:18:59.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167669795495913. ------
17-03-17 21:18:59.518 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:18:59.518 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17389 mm
17-03-17 21:18:59.518 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:18:59.628 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:18:59.628 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 114 ms overall
17-03-17 21:18:59.628 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:18:59.628 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:18:59.628 -07 000000431 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 21:18:59.628 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37986, sync = True, waitForSettling = False)
17-03-17 21:18:59.628 -07 000000480 INF: Z Motor: Moving to -0.173889 mm, started at -0.167670 mm, distance = -6.22 um
17-03-17 21:18:59.638 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:18:59.638 -07 000000424 INF: FPGA: Recv YRDPOS 146470
17-03-17 21:18:59.648 -07 000000480 INF: FPGA: Xmit ZDACW 37986\n [Z Motor]
17-03-17 21:18:59.648 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:18:59.648 -07 000000431 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:18:59.648 -07 000000431 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:18:59.648 -07 000000431 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:18:59.648 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:18:59.658 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:18:59.658 -07 000000480 INF: FPGA: 'ZDACW 37986' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:18:59.668 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:18:59.668 -07 000000459 INF: FPGA: Recv ZDACR 37986
17-03-17 21:18:59.678 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:18:59.678 -07 000000480 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 21:18:59.708 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 21:18:59.708 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:18:59.708 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:59.708 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:59.708 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:18:59.718 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:18:59.718 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:18:59.718 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:18:59.718 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:18:59.718 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:18:59.828 -07 000000476 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:18:59.828 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 202 ms overall
17-03-17 21:19:00.028 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 21:19:00.028 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 21:19:00.068 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:00.068 -07 000000429 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:19:00.078 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:19:00.078 -07 000000431 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:00.078 -07 000000431 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:19:00.078 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.181 mm/sec
17-03-17 21:19:01.028 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:01.028 -07 000000415 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:19:01.038 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:01.038 -07 000000431 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:01.058 -07 000000431 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:19:01.058 -07 000000431 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:19:01.058 -07 000000431 INF: Y Motor: Moved to 72.3491 after 1429 ms (table move)
17-03-17 21:19:01.058 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173889 mm (DAC = 37986)
17-03-17 21:19:01.058 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:01.068 -07 000000012 INF: FPGA: Recv ZSGSRD 36352
17-03-17 21:19:01.068 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:19:01.068 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:01.068 -07 000000480 INF: FPGA: Recv ZSGSRD 36361
17-03-17 21:19:01.078 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:19:01.078 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:01.078 -07 000000431 INF: FPGA: Recv ZSGSRD 36358
17-03-17 21:19:01.088 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:01.088 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:01.088 -07 000000569 INF: FPGA: Recv ZSGSRD 36361
17-03-17 21:19:01.098 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:01.098 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:01.098 -07 000000429 INF: FPGA: Recv ZSGSRD 36362
17-03-17 21:19:01.108 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:01.108 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:01.108 -07 000000475 INF: FPGA: Recv ZSGSRD 36350
17-03-17 21:19:01.118 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:01.118 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:01.118 -07 000000480 INF: FPGA: Recv ZSGSRD 36355
17-03-17 21:19:01.128 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:01.128 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:01.128 -07 000000424 INF: FPGA: Recv ZSGSRD 36360
17-03-17 21:19:01.138 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:01.138 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:01.138 -07 000000569 INF: FPGA: Recv ZSGSRD 36358
17-03-17 21:19:01.148 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:01.148 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:01.148 -07 000000429 INF: FPGA: Recv ZSGSRD 36357
17-03-17 21:19:01.158 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:01.158 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:01.158 -07 000000438 INF: FPGA: Recv ZPIEZORD 32651
17-03-17 21:19:01.168 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:01.168 -07 000000512 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.796 V. Piezo Error = -8.2 V.
17-03-17 21:19:01.168 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36357 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36358 (-173.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36350 (-173.0 uncal um), Max = 36362 (-173.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:19:01.168 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36357, posNoise = 5, negNoise = 7
17-03-17 21:19:01.168 -07 000000512 INF: Z Motor: After move to -0.173889, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:01.168 -07 000000512 INF: Z Motor: Settle wait time = 1431 ms, measure time = 102 ms (allowed 150 ms), total time = 1533 ms
17-03-17 21:19:01.168 -07 000000512 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:19:01.218 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1699 ms
17-03-17 21:19:01.218 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:19:01.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:01.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:01.218 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:01.218 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:01.218 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:19:01.218 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:01.218 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:01.218 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:19:01.228 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:19:01.228 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:19:01.228 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:19:01.228 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 21:19:01.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:19:01.278 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:19:01.478 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:19:01.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:19:01.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:19:01.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:19:01.518 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:19:01.518 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 21:19:01.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 21:19:01.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:19:01.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:01.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:19:01.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:19:01.618 -07 000000512 INF: Autofocus start
17-03-17 21:19:01.618 -07 000000512 INF: MeasureProfile start
17-03-17 21:19:01.618 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:01.618 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:01.628 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:19:01.628 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:19:01.628 -07 000000512 INF: MeasureProfile done
17-03-17 21:19:01.628 -07 000000512 INF: X=48  Z correction [um]=0.1739867
17-03-17 21:19:01.628 -07 000000512 INF: Autofocus finished
17-03-17 21:19:01.828 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:19:01.828 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:19:01.828 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173888432849138. ----------
17-03-17 21:19:01.828 -07 000000610 INF: Cycle	49	Tile	16	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:19:01.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36536, sync = True, waitForSettling = True)
17-03-17 21:19:01.838 -07 000000610 INF: Z Motor: Moving to -0.167251 mm, started at -0.173888 mm, distance = 6.64 um
17-03-17 21:19:01.838 -07 000000610 INF: FPGA: Xmit ZDACW 36536\n [Z Motor]
17-03-17 21:19:01.838 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:19:01.848 -07 000000610 INF: FPGA: 'ZDACW 36536' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:19:01.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:01.848 -07 000000608 INF: FPGA: Recv ZDACR 36536
17-03-17 21:19:01.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:01.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:19:01.868 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:19:01.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:19:02.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:02.008 -07 000000547 INF: FPGA: Recv ZSGSRD 35323
17-03-17 21:19:02.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:02.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:02.018 -07 000000626 INF: FPGA: Recv ZSGSRD 35328
17-03-17 21:19:02.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:02.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:02.028 -07 000000458 INF: FPGA: Recv ZSGSRD 35325
17-03-17 21:19:02.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:02.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:02.038 -07 000000501 INF: FPGA: Recv ZSGSRD 35323
17-03-17 21:19:02.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:02.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:02.048 -07 000000476 INF: FPGA: Recv ZSGSRD 35325
17-03-17 21:19:02.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:02.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:02.058 -07 000000569 INF: FPGA: Recv ZSGSRD 35323
17-03-17 21:19:02.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:02.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:02.068 -07 000000415 INF: FPGA: Recv ZSGSRD 35329
17-03-17 21:19:02.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:02.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:02.078 -07 000000576 INF: FPGA: Recv ZSGSRD 35328
17-03-17 21:19:02.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:02.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:02.088 -07 000000480 INF: FPGA: Recv ZSGSRD 35321
17-03-17 21:19:02.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:02.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:02.098 -07 000000382 INF: FPGA: Recv ZSGSRD 35331
17-03-17 21:19:02.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:02.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:02.108 -07 000000431 INF: FPGA: Recv ZPIEZORD 31288
17-03-17 21:19:02.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:02.118 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.575 V. Piezo Error = -8.9 V.
17-03-17 21:19:02.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35326 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35325 (-166.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35321 (-166.4 uncal um), Max = 35331 (-166.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:19:02.118 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35326, posNoise = 5, negNoise = 5
17-03-17 21:19:02.118 -07 000000610 INF: Z Motor: After move to -0.167251, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:02.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:19:02.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:02.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:02.118 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:02.118 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:02.118 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:19:02.118 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:19:02.118 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:19:02.118 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:02.118 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:19:02.118 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:19:02.118 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:02.118 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:19:02.128 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:19:02.128 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:19:02.128 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:19:02.128 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:19:02.138 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:19:02.138 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 21:19:02.138 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:19:02.138 -07 000000476 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:19:02.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 36713 150\n [Camera]
17-03-17 21:19:02.338 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:19:02.768 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:19:02.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:19:02.768 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:02.778 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:19:02.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:19:02.778 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:02.778 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:02.778 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:19:02.788 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:02.788 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:19:02.868 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.000345,
17-03-17 21:19:02.968 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36713 814
17-03-17 21:19:03.118 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:19:03.168 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:19:03.168 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 21:19:03.168 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:03.168 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:03.168 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:19:03.178 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:19:03.178 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:19:03.178 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:03.178 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:03.188 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 21:19:03.318 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:19:03.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:19:03.318 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:03.328 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:19:03.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:19:03.328 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:03.328 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:03.328 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:19:03.328 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:03.328 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:19:03.508 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:19:03.518 -07 000000512 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:19:03.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 36713 150' command took 2 ms to send, 1361 ms to get response, and 1372 ms overall
17-03-17 21:19:03.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:19:03.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.167265070130983. ------
17-03-17 21:19:03.518 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:03.518 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17374 mm
17-03-17 21:19:03.518 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:19:03.518 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:03.528 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:19:03.528 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:19:03.528 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 37954, sync = True, waitForSettling = False)
17-03-17 21:19:03.528 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:19:03.528 -07 000000627 INF: Z Motor: Moving to -0.173742 mm, started at -0.167265 mm, distance = -6.48 um
17-03-17 21:19:03.528 -07 000000431 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 21:19:03.538 -07 000000627 INF: FPGA: Xmit ZDACW 37954\n [Z Motor]
17-03-17 21:19:03.538 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:19:03.548 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:03.548 -07 000000627 INF: FPGA: 'ZDACW 37954' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:19:03.548 -07 000000569 INF: FPGA: Recv YRDPOS 148171
17-03-17 21:19:03.558 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:19:03.558 -07 000000431 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:03.558 -07 000000431 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:19:03.558 -07 000000431 INF: Y Motor: Moving 1350 steps-28
17-03-17 21:19:03.558 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:03.558 -07 000000429 INF: FPGA: Recv ZDACR 37954
17-03-17 21:19:03.568 -07 000000627 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:19:03.568 -07 000000627 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 21:19:03.568 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:19:03.718 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 21:19:03.718 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:19:03.718 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:03.718 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:03.728 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:19:03.728 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:19:03.728 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:19:03.728 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:19:03.728 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:19:03.728 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:03.728 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:03.728 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 21:19:03.938 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 21:19:03.938 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:19:03.978 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:03.978 -07 000000424 INF: FPGA: Recv YRDPOS 149863
17-03-17 21:19:03.988 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:19:03.988 -07 000000431 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:03.988 -07 000000431 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 21:19:03.988 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.174 mm/sec
17-03-17 21:19:04.938 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:04.938 -07 000000459 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:19:04.948 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:04.948 -07 000000431 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:04.968 -07 000000431 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:19:04.968 -07 000000431 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:19:04.968 -07 000000431 INF: Y Motor: Moved to 73.1758 after 1443 ms (table move)
17-03-17 21:19:04.968 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173742 mm (DAC = 37954)
17-03-17 21:19:04.968 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:04.978 -07 000000438 INF: FPGA: Recv ZSGSRD 36344
17-03-17 21:19:04.978 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:19:04.978 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:04.978 -07 000000475 INF: FPGA: Recv ZSGSRD 36329
17-03-17 21:19:04.988 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:04.988 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:04.988 -07 000000608 INF: FPGA: Recv ZSGSRD 36336
17-03-17 21:19:04.998 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:04.998 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:04.998 -07 000000626 INF: FPGA: Recv ZSGSRD 36336
17-03-17 21:19:05.008 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:05.008 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:05.008 -07 000000438 INF: FPGA: Recv ZSGSRD 36342
17-03-17 21:19:05.018 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:05.018 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:05.018 -07 000000476 INF: FPGA: Recv ZSGSRD 36342
17-03-17 21:19:05.028 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:05.028 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:05.028 -07 000000475 INF: FPGA: Recv ZSGSRD 36333
17-03-17 21:19:05.038 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:05.038 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:05.038 -07 000000576 INF: FPGA: Recv ZSGSRD 36335
17-03-17 21:19:05.048 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:05.048 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:05.048 -07 000000626 INF: FPGA: Recv ZSGSRD 36328
17-03-17 21:19:05.058 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:05.058 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:05.058 -07 000000458 INF: FPGA: Recv ZSGSRD 36330
17-03-17 21:19:05.068 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:05.068 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:05.068 -07 000000476 INF: FPGA: Recv ZPIEZORD 32651
17-03-17 21:19:05.078 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:05.078 -07 000000547 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.791 V. Piezo Error = -8.2 V.
17-03-17 21:19:05.078 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36336 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36336 (-172.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36328 (-172.8 uncal um), Max = 36344 (-172.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:19:05.078 -07 000000547 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36336, posNoise = 8, negNoise = 8
17-03-17 21:19:05.078 -07 000000547 INF: Z Motor: After move to -0.173742, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:05.078 -07 000000547 INF: Z Motor: Settle wait time = 1446 ms, measure time = 103 ms (allowed 150 ms), total time = 1549 ms
17-03-17 21:19:05.078 -07 000000547 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:19:05.128 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 21:19:05.128 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:19:05.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:05.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:05.128 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:05.128 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:05.128 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:19:05.128 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:05.128 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:05.128 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:19:05.138 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:19:05.138 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:19:05.148 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:19:05.148 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:19:05.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:19:05.198 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:19:05.398 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:19:05.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:19:05.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:19:05.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 21:19:05.438 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:19:05.438 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 21:19:05.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 21:19:05.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 21:19:05.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:05.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:19:05.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 21:19:05.538 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:05.538 -07 000000459 INF: Autofocus start
17-03-17 21:19:05.538 -07 000000459 INF: MeasureProfile start
17-03-17 21:19:05.538 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:05.548 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:19:05.548 -07 000000476 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:19:05.548 -07 000000459 INF: MeasureProfile done
17-03-17 21:19:05.548 -07 000000459 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:19:05.548 -07 000000459 INF: Autofocus finished
17-03-17 21:19:05.748 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:19:05.748 -07 000000476 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:19:05.748 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173753524394161. ----------
17-03-17 21:19:05.748 -07 000000610 INF: Cycle	49	Tile	17	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:19:05.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36451, sync = True, waitForSettling = True)
17-03-17 21:19:05.758 -07 000000610 INF: Z Motor: Moving to -0.166862 mm, started at -0.173754 mm, distance = 6.89 um
17-03-17 21:19:05.758 -07 000000610 INF: FPGA: Xmit ZDACW 36451\n [Z Motor]
17-03-17 21:19:05.758 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 21:19:05.768 -07 000000610 INF: FPGA: 'ZDACW 36451' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:19:05.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:05.768 -07 000000512 INF: FPGA: Recv ZDACR 36451
17-03-17 21:19:05.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:05.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:19:05.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:05.928 -07 000000438 INF: FPGA: Recv ZSGSRD 35267
17-03-17 21:19:05.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:05.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:05.938 -07 000000012 INF: FPGA: Recv ZSGSRD 35268
17-03-17 21:19:05.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:05.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:05.948 -07 000000626 INF: FPGA: Recv ZSGSRD 35266
17-03-17 21:19:05.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:05.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:05.958 -07 000000576 INF: FPGA: Recv ZSGSRD 35262
17-03-17 21:19:05.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:05.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:05.968 -07 000000569 INF: FPGA: Recv ZSGSRD 35264
17-03-17 21:19:05.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:05.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:05.978 -07 000000431 INF: FPGA: Recv ZSGSRD 35272
17-03-17 21:19:05.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:05.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:05.988 -07 000000480 INF: FPGA: Recv ZSGSRD 35270
17-03-17 21:19:05.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:05.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:05.998 -07 000000475 INF: FPGA: Recv ZSGSRD 35259
17-03-17 21:19:06.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:06.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:06.008 -07 000000424 INF: FPGA: Recv ZSGSRD 35266
17-03-17 21:19:06.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:06.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:06.018 -07 000000459 INF: FPGA: Recv ZSGSRD 35264
17-03-17 21:19:06.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:06.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:06.028 -07 000000438 INF: FPGA: Recv ZPIEZORD 31229
17-03-17 21:19:06.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:06.038 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.562 V. Piezo Error = -8.9 V.
17-03-17 21:19:06.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35266 (-166.0 uncal um), Error = 0.8 uncal um, Median = 35266 (-166.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35259 (-166.0 uncal um), Max = 35272 (-166.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:19:06.038 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35266, posNoise = 6, negNoise = 7
17-03-17 21:19:06.038 -07 000000610 INF: Z Motor: After move to -0.166862, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:06.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:19:06.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:06.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:06.038 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:06.038 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:06.038 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:19:06.038 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:19:06.038 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:19:06.038 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:06.038 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:19:06.038 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:19:06.038 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:06.038 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:19:06.048 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:19:06.048 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:19:06.048 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:19:06.048 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:19:06.048 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:19:06.058 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:19:06.058 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:19:06.058 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:19:06.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 36628 150\n [Camera]
17-03-17 21:19:06.258 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:19:06.688 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:19:06.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:19:06.688 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:06.688 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:06.688 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:19:06.688 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:19:06.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:19:06.688 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:06.688 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:06.688 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:19:06.868 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:19:06.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:19:06.878 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36628 814
17-03-17 21:19:07.028 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:19:07.068 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 21:19:07.068 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:19:07.068 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:07.068 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 21:19:07.068 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:19:07.068 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:07.068 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:07.068 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:07.068 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:19:07.078 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:19:07.228 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:19:07.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:19:07.238 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:07.238 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:07.238 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:19:07.238 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:19:07.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:19:07.238 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:07.238 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:07.238 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:19:07.428 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:19:07.428 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:19:07.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 36628 150' command took 2 ms to send, 1362 ms to get response, and 1370 ms overall
17-03-17 21:19:07.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:19:07.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166879617402477. ------
17-03-17 21:19:07.428 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17328 mm
17-03-17 21:19:07.428 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:19:07.428 -07 000000458 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:07.428 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37853, sync = True, waitForSettling = False)
17-03-17 21:19:07.428 -07 000000576 INF: Z Motor: Moving to -0.173280 mm, started at -0.166880 mm, distance = -6.40 um
17-03-17 21:19:07.428 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:19:07.438 -07 000000480 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 21:19:07.558 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:07.558 -07 000000458 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 125 ms to get response, and 127 ms overall
17-03-17 21:19:07.558 -07 000000576 INF: FPGA: Xmit ZDACW 37853\n [Z Motor]
17-03-17 21:19:07.558 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:19:07.568 -07 000000576 INF: FPGA: 'ZDACW 37853' command took 125 ms to send, 0 ms to get response, and 130 ms overall
17-03-17 21:19:07.568 -07 000000458 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:19:07.578 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:07.578 -07 000000476 INF: FPGA: Recv YRDPOS 149864
17-03-17 21:19:07.588 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:07.588 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:19:07.588 -07 000000480 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:07.588 -07 000000480 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:19:07.588 -07 000000480 INF: Y Motor: Moving 1355 steps-35
17-03-17 21:19:07.588 -07 000000431 INF: FPGA: Recv ZDACR 37853
17-03-17 21:19:07.598 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:19:07.598 -07 000000576 INF: Z Motor: MoveAbsStepped took 160 ms (did NOT wait for settling yet))
17-03-17 21:19:07.598 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:19:07.628 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:19:07.628 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:19:07.628 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:07.628 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 21:19:07.628 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:19:07.628 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:07.638 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:07.638 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:19:07.638 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 21:19:07.638 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:19:07.768 -07 000000424 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:19:07.768 -07 000000458 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 207 ms overall
17-03-17 21:19:07.968 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 21:19:07.968 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:19:07.998 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:08.008 -07 000000626 INF: FPGA: Recv YRDPOS 151567
17-03-17 21:19:08.008 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:19:08.008 -07 000000480 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:08.008 -07 000000480 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:19:08.008 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.847 mm, average velocity = 2.188 mm/sec
17-03-17 21:19:08.238 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.960826,
17-03-17 21:19:08.958 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:08.958 -07 000000459 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:19:08.968 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:08.968 -07 000000480 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:08.988 -07 000000480 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:19:08.988 -07 000000480 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:19:08.988 -07 000000480 INF: Y Motor: Moved to 74.0078 after 1553 ms (table move)
17-03-17 21:19:08.988 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173280 mm (DAC = 37853)
17-03-17 21:19:08.988 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:08.988 -07 000000608 INF: FPGA: Recv ZSGSRD 36268
17-03-17 21:19:08.998 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:19:08.998 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:08.998 -07 000000382 INF: FPGA: Recv ZSGSRD 36263
17-03-17 21:19:09.008 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:09.008 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:09.008 -07 000000480 INF: FPGA: Recv ZSGSRD 36257
17-03-17 21:19:09.018 -07 000000429 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:09.018 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:09.018 -07 000000459 INF: FPGA: Recv ZSGSRD 36273
17-03-17 21:19:09.028 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:09.028 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:09.028 -07 000000547 INF: FPGA: Recv ZSGSRD 36263
17-03-17 21:19:09.038 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:09.038 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:09.038 -07 000000501 INF: FPGA: Recv ZSGSRD 36264
17-03-17 21:19:09.048 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:09.048 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:09.048 -07 000000576 INF: FPGA: Recv ZSGSRD 36261
17-03-17 21:19:09.058 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:09.058 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:09.058 -07 000000480 INF: FPGA: Recv ZSGSRD 36269
17-03-17 21:19:09.068 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:09.068 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:09.068 -07 000000438 INF: FPGA: Recv ZSGSRD 36268
17-03-17 21:19:09.078 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:09.078 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:09.078 -07 000000382 INF: FPGA: Recv ZSGSRD 36266
17-03-17 21:19:09.088 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:09.088 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:09.088 -07 000000438 INF: FPGA: Recv ZPIEZORD 32598
17-03-17 21:19:09.098 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:19:09.098 -07 000000429 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.776 V. Piezo Error = -8.1 V.
17-03-17 21:19:09.098 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36265 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36265 (-172.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36257 (-172.4 uncal um), Max = 36273 (-172.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:19:09.098 -07 000000429 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36265, posNoise = 8, negNoise = 8
17-03-17 21:19:09.098 -07 000000429 INF: Z Motor: After move to -0.173280, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:09.098 -07 000000429 INF: Z Motor: Settle wait time = 1557 ms, measure time = 104 ms (allowed 150 ms), total time = 1661 ms
17-03-17 21:19:09.098 -07 000000429 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:19:09.148 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1712 ms
17-03-17 21:19:09.148 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:19:09.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:09.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:09.148 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:09.148 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:19:09.148 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:09.148 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:09.148 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:09.148 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:19:09.158 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:19:09.158 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:19:09.158 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:19:09.158 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:19:09.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:19:09.208 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:19:09.408 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:19:09.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:19:09.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:19:09.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:19:09.448 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:19:09.448 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 21:19:09.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 21:19:09.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:19:09.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:09.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:19:09.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:19:09.548 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:09.548 -07 000000569 INF: Autofocus start
17-03-17 21:19:09.548 -07 000000569 INF: MeasureProfile start
17-03-17 21:19:09.548 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:09.558 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:19:09.558 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:19:09.558 -07 000000569 INF: MeasureProfile done
17-03-17 21:19:09.558 -07 000000569 INF: X=0  Z correction [um]=-0.0713522
17-03-17 21:19:09.558 -07 000000569 INF: Autofocus finished
17-03-17 21:19:09.758 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:19:09.758 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 21:19:09.758 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.173297405332096. ----------
17-03-17 21:19:09.768 -07 000000610 INF: Cycle	49	Tile	18	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:19:09.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36350, sync = True, waitForSettling = True)
17-03-17 21:19:09.768 -07 000000610 INF: Z Motor: Moving to -0.166400 mm, started at -0.173297 mm, distance = 6.90 um
17-03-17 21:19:09.768 -07 000000610 INF: FPGA: Xmit ZDACW 36350\n [Z Motor]
17-03-17 21:19:09.768 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:19:09.778 -07 000000610 INF: FPGA: 'ZDACW 36350' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:19:09.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:09.778 -07 000000512 INF: FPGA: Recv ZDACR 36350
17-03-17 21:19:09.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:09.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:19:09.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:09.938 -07 000000576 INF: FPGA: Recv ZSGSRD 35192
17-03-17 21:19:09.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:09.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:09.948 -07 000000429 INF: FPGA: Recv ZSGSRD 35197
17-03-17 21:19:09.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:09.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:09.958 -07 000000626 INF: FPGA: Recv ZSGSRD 35186
17-03-17 21:19:09.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:09.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:09.968 -07 000000475 INF: FPGA: Recv ZSGSRD 35190
17-03-17 21:19:09.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:09.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:09.978 -07 000000569 INF: FPGA: Recv ZSGSRD 35196
17-03-17 21:19:09.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:09.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:09.988 -07 000000627 INF: FPGA: Recv ZSGSRD 35195
17-03-17 21:19:09.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:09.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:09.998 -07 000000431 INF: FPGA: Recv ZSGSRD 35197
17-03-17 21:19:10.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:10.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:10.008 -07 000000547 INF: FPGA: Recv ZSGSRD 35190
17-03-17 21:19:10.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:10.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:10.018 -07 000000576 INF: FPGA: Recv ZSGSRD 35191
17-03-17 21:19:10.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:10.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:10.028 -07 000000459 INF: FPGA: Recv ZSGSRD 35193
17-03-17 21:19:10.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:10.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:10.038 -07 000000424 INF: FPGA: Recv ZPIEZORD 31152
17-03-17 21:19:10.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:10.048 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.547 V. Piezo Error = -8.9 V.
17-03-17 21:19:10.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35193 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35192 (-165.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35186 (-165.5 uncal um), Max = 35197 (-165.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:19:10.048 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35193, posNoise = 4, negNoise = 7
17-03-17 21:19:10.048 -07 000000610 INF: Z Motor: After move to -0.166400, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:10.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 21:19:10.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:10.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:10.048 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:10.048 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:10.048 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:19:10.048 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:19:10.048 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:19:10.048 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:10.048 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:10.048 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:19:10.048 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:19:10.048 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:19:10.058 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:19:10.058 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:19:10.058 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:19:10.058 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:19:10.068 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 21:19:10.068 -07 000000458 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:19:10.068 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:19:10.068 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:19:10.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 36527 150\n [Camera]
17-03-17 21:19:10.268 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:19:10.698 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:19:10.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:19:10.698 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:10.698 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:19:10.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:19:10.708 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:10.708 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:10.708 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-17 21:19:10.708 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:10.708 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:19:10.888 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36527 814
17-03-17 21:19:11.038 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:19:11.088 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:19:11.088 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:19:11.088 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:11.088 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:19:11.088 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:19:11.088 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:11.088 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:11.098 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:11.098 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:19:11.098 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:19:11.248 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:19:11.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:19:11.248 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:11.248 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:11.248 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 21:19:11.248 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:19:11.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:19:11.248 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:11.248 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:11.248 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:19:11.438 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:19:11.438 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:19:11.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 36527 150' command took 2 ms to send, 1367 ms to get response, and 1370 ms overall
17-03-17 21:19:11.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 21:19:11.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.166410649916128. ------
17-03-17 21:19:11.448 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:11.448 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17284 mm
17-03-17 21:19:11.448 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:19:11.448 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:19:11.448 -07 000000501 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 21:19:11.568 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:11.568 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:11.568 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 117 ms overall
17-03-17 21:19:11.568 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 37757, sync = True, waitForSettling = False)
17-03-17 21:19:11.568 -07 000000608 INF: Z Motor: Moving to -0.172840 mm, started at -0.166411 mm, distance = -6.43 um
17-03-17 21:19:11.568 -07 000000512 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:19:11.578 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:19:11.578 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:11.578 -07 000000501 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:11.578 -07 000000501 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:19:11.578 -07 000000501 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:19:11.588 -07 000000608 INF: FPGA: Xmit ZDACW 37757\n [Z Motor]
17-03-17 21:19:11.588 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:19:11.598 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:19:11.598 -07 000000608 INF: FPGA: 'ZDACW 37757' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:19:11.608 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:11.608 -07 000000382 INF: FPGA: Recv ZDACR 37757
17-03-17 21:19:11.618 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:19:11.618 -07 000000608 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 21:19:11.648 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:19:11.648 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:19:11.648 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:11.648 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:19:11.648 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:19:11.648 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:11.658 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:11.658 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:19:11.658 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:11.668 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:19:11.778 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:19:11.778 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 21:19:11.868 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:19:11.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:19:11.968 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:19:11.968 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:19:11.998 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:11.998 -07 000000476 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:19:12.008 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:19:12.008 -07 000000501 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:12.008 -07 000000501 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 21:19:12.008 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-17 21:19:12.958 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:12.958 -07 000000382 INF: FPGA: Recv YRDPOS 153255
17-03-17 21:19:12.968 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:12.968 -07 000000501 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:12.978 -07 000000501 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:19:12.978 -07 000000501 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:19:12.978 -07 000000501 INF: Y Motor: Moved to 74.8315 after 1531 ms (table move)
17-03-17 21:19:12.988 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172840 mm (DAC = 37757)
17-03-17 21:19:12.988 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:12.988 -07 000000627 INF: FPGA: Recv ZSGSRD 36201
17-03-17 21:19:12.998 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:19:12.998 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:12.998 -07 000000626 INF: FPGA: Recv ZSGSRD 36191
17-03-17 21:19:13.008 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:13.008 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:13.008 -07 000000429 INF: FPGA: Recv ZSGSRD 36191
17-03-17 21:19:13.018 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:13.018 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:13.018 -07 000000608 INF: FPGA: Recv ZSGSRD 36191
17-03-17 21:19:13.028 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:13.028 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:13.028 -07 000000475 INF: FPGA: Recv ZSGSRD 36198
17-03-17 21:19:13.038 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:13.038 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:13.038 -07 000000431 INF: FPGA: Recv ZSGSRD 36195
17-03-17 21:19:13.048 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:13.048 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:13.048 -07 000000012 INF: FPGA: Recv ZSGSRD 36194
17-03-17 21:19:13.058 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:13.058 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:13.058 -07 000000476 INF: FPGA: Recv ZSGSRD 36195
17-03-17 21:19:13.068 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:13.068 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:13.068 -07 000000608 INF: FPGA: Recv ZSGSRD 36192
17-03-17 21:19:13.078 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:13.078 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:13.078 -07 000000480 INF: FPGA: Recv ZSGSRD 36191
17-03-17 21:19:13.088 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:13.088 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:13.088 -07 000000458 INF: FPGA: Recv ZPIEZORD 32497
17-03-17 21:19:13.098 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:13.098 -07 000000547 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.761 V. Piezo Error = -8.2 V.
17-03-17 21:19:13.098 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36194 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36193 (-172.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36191 (-171.9 uncal um), Max = 36201 (-172.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:19:13.098 -07 000000547 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36194, posNoise = 7, negNoise = 3
17-03-17 21:19:13.098 -07 000000547 INF: Z Motor: After move to -0.172840, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:13.098 -07 000000547 INF: Z Motor: Settle wait time = 1420 ms, measure time = 109 ms (allowed 150 ms), total time = 1529 ms
17-03-17 21:19:13.098 -07 000000547 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 21:19:13.148 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1697 ms
17-03-17 21:19:13.148 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:19:13.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:13.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:13.148 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:13.148 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:19:13.148 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:13.148 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:13.148 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:19:13.148 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:19:13.158 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:19:13.158 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:19:13.158 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:19:13.158 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:19:13.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:19:13.208 -07 000000424 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:19:13.408 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:19:13.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:19:13.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:19:13.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:19:13.448 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:19:13.448 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 21:19:13.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 21:19:13.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:19:13.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:13.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:19:13.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:19:13.548 -07 000000012 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:13.548 -07 000000480 INF: Autofocus start
17-03-17 21:19:13.548 -07 000000480 INF: MeasureProfile start
17-03-17 21:19:13.548 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:13.558 -07 000000012 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:19:13.558 -07 000000012 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:19:13.568 -07 000000480 INF: MeasureProfile done
17-03-17 21:19:13.568 -07 000000480 INF: X=16  Z correction [um]=0.01042744
17-03-17 21:19:13.568 -07 000000480 INF: Autofocus finished
17-03-17 21:19:13.608 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.958108,
17-03-17 21:19:13.758 -07 000000476 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:19:13.758 -07 000000012 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 21:19:13.768 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.172841286270031. ----------
17-03-17 21:19:13.768 -07 000000610 INF: Cycle	49	Tile	19	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:19:13.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36272, sync = True, waitForSettling = True)
17-03-17 21:19:13.768 -07 000000610 INF: Z Motor: Moving to -0.166043 mm, started at -0.172841 mm, distance = 6.80 um
17-03-17 21:19:13.768 -07 000000610 INF: FPGA: Xmit ZDACW 36272\n [Z Motor]
17-03-17 21:19:13.778 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:19:13.778 -07 000000610 INF: FPGA: 'ZDACW 36272' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 21:19:13.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:13.778 -07 000000424 INF: FPGA: Recv ZDACR 36272
17-03-17 21:19:13.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:19:13.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:19:13.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:13.938 -07 000000480 INF: FPGA: Recv ZSGSRD 35142
17-03-17 21:19:13.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:13.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:13.948 -07 000000476 INF: FPGA: Recv ZSGSRD 35139
17-03-17 21:19:13.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:13.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:13.968 -07 000000480 INF: FPGA: Recv ZSGSRD 35141
17-03-17 21:19:13.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:19:13.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:13.978 -07 000000476 INF: FPGA: Recv ZSGSRD 35139
17-03-17 21:19:13.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:14.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:14.008 -07 000000576 INF: FPGA: Recv ZSGSRD 35136
17-03-17 21:19:14.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:19:14.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:14.018 -07 000000627 INF: FPGA: Recv ZSGSRD 35136
17-03-17 21:19:14.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:14.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:14.038 -07 000000480 INF: FPGA: Recv ZSGSRD 35138
17-03-17 21:19:14.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:19:14.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:14.048 -07 000000459 INF: FPGA: Recv ZSGSRD 35137
17-03-17 21:19:14.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:14.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:14.058 -07 000000415 INF: FPGA: Recv ZSGSRD 35140
17-03-17 21:19:14.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:14.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:14.068 -07 000000475 INF: FPGA: Recv ZSGSRD 35139
17-03-17 21:19:14.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:14.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:14.078 -07 000000512 INF: FPGA: Recv ZPIEZORD 31108
17-03-17 21:19:14.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:14.088 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.535 V. Piezo Error = -8.9 V.
17-03-17 21:19:14.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35139 (-165.2 uncal um), Error = 0.8 uncal um, Median = 35139 (-165.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35136 (-165.2 uncal um), Max = 35142 (-165.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:19:14.088 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35139, posNoise = 3, negNoise = 3
17-03-17 21:19:14.088 -07 000000610 INF: Z Motor: After move to -0.166043, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:14.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 314 ms)
17-03-17 21:19:14.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:14.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:14.088 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:19:14.088 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:14.088 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:14.088 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:19:14.088 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:19:14.088 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:14.088 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:19:14.088 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:19:14.088 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:19:14.088 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:19:14.098 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:19:14.098 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:19:14.098 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:19:14.098 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:19:14.108 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:19:14.108 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:19:14.108 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:19:14.108 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:19:14.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 36449 150\n [Camera]
17-03-17 21:19:14.308 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:19:14.738 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:19:14.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:19:14.738 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:14.738 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:19:14.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:19:14.738 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:14.738 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:14.738 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:19:14.748 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:14.748 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:19:14.928 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36449 814
17-03-17 21:19:15.078 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:19:15.138 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:19:15.138 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:19:15.138 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:15.138 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:15.138 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:19:15.138 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 21:19:15.138 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:19:15.138 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:15.148 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:15.148 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:19:15.288 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:19:15.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:19:15.288 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:15.288 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:19:15.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:19:15.288 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:15.288 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:15.288 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:19:15.298 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:15.298 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 21:19:15.478 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:19:15.478 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:19:15.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 36449 150' command took 4 ms to send, 1362 ms to get response, and 1369 ms overall
17-03-17 21:19:15.688 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 21:19:15.688 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:19:15.688 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:15.688 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:19:15.698 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:19:15.698 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:15.698 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:15.698 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:15.698 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 21:19:15.698 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:19:15.698 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:19:15.738 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 21:19:15.738 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:19:15.778 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 21:19:15.788 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 21:19:15.788 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 21:19:15.788 -07 000000476 INF: FPGA: Recv EMCUR 
17-03-17 21:19:15.798 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:19:15.798 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 21:19:16.298 -07 000000576 INF: FPGA: Recv EMIN
17-03-17 21:19:16.298 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 21:19:16.298 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 21:19:16.298 -07 000000424 INF: FPGA: Recv EMCUR 
17-03-17 21:19:16.308 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:19:16.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:19:16.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.166063742460473. ------
17-03-17 21:19:16.308 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:16.308 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14047 mm
17-03-17 21:19:16.308 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:19:16.318 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:16.318 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:19:16.318 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:19:16.318 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 21:19:16.318 -07 000000459 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 21:19:16.318 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 30686, sync = True, waitForSettling = False)
17-03-17 21:19:16.318 -07 000000475 INF: Z Motor: Moving to -0.140472 mm, started at -0.166064 mm, distance = 25.59 um
17-03-17 21:19:16.328 -07 000000475 INF: FPGA: Xmit ZDACW 30686\n [Z Motor]
17-03-17 21:19:16.328 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:19:16.338 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:16.338 -07 000000475 INF: FPGA: 'ZDACW 30686' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 21:19:16.338 -07 000000458 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:19:16.348 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 21:19:16.348 -07 000000459 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:16.348 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:16.348 -07 000000431 INF: FPGA: Recv ZDACR 30686
17-03-17 21:19:16.348 -07 000000459 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 21:19:16.348 -07 000000459 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 21:19:16.358 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:19:16.358 -07 000000459 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 21:19:16.358 -07 000000475 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 21:19:16.518 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:19:16.518 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 21:19:16.868 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:19:16.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:19:17.978 -07 000000547 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 21:19:17.978 -07 000000459 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1633 ms overall
17-03-17 21:19:17.978 -07 000000459 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 21:19:17.978 -07 000000459 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 21:19:17.988 -07 000000459 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1633 ms, distance = 14.919 mm, average velocity = 9.136 mm/sec
17-03-17 21:19:18.978 -07 000000012 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.958108,
17-03-17 21:19:20.838 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:20.838 -07 000000547 INF: FPGA: Recv YRDPOS 122697
17-03-17 21:19:20.848 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:20.848 -07 000000459 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:20.878 -07 000000459 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:19:20.878 -07 000000459 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 21:19:20.878 -07 000000459 INF: Y Motor: Moved to 59.9106 after 4559 ms
17-03-17 21:19:20.878 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140472 mm (DAC = 30686)
17-03-17 21:19:20.878 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:20.878 -07 000000475 INF: FPGA: Recv ZSGSRD 31156
17-03-17 21:19:20.888 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:19:20.888 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:20.888 -07 000000547 INF: FPGA: Recv ZSGSRD 31154
17-03-17 21:19:20.898 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:20.898 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:20.898 -07 000000512 INF: FPGA: Recv ZSGSRD 31156
17-03-17 21:19:20.908 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:20.908 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:20.908 -07 000000480 INF: FPGA: Recv ZSGSRD 31154
17-03-17 21:19:20.918 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:20.918 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:20.918 -07 000000012 INF: FPGA: Recv ZSGSRD 31155
17-03-17 21:19:20.928 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:19:20.928 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:20.928 -07 000000569 INF: FPGA: Recv ZSGSRD 31163
17-03-17 21:19:20.938 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:20.938 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:20.938 -07 000000424 INF: FPGA: Recv ZSGSRD 31160
17-03-17 21:19:20.948 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:20.948 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:20.948 -07 000000431 INF: FPGA: Recv ZSGSRD 31149
17-03-17 21:19:20.958 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:20.958 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:20.958 -07 000000382 INF: FPGA: Recv ZSGSRD 31157
17-03-17 21:19:20.968 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:20.968 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:20.968 -07 000000480 INF: FPGA: Recv ZSGSRD 31155
17-03-17 21:19:20.978 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:20.978 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:20.978 -07 000000431 INF: FPGA: Recv ZPIEZORD 26907
17-03-17 21:19:20.988 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:20.988 -07 000000608 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.8 V, since DAC is at 4.682 V. Piezo Error = -9.3 V.
17-03-17 21:19:20.988 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.5 um, Read 10 ADC samples: Avg = 31156 (-139.7 uncal um), Error = 0.8 uncal um, Median = 31156 (-139.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 31149 (-139.6 uncal um), Max = 31163 (-139.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:19:20.988 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31156, posNoise = 7, negNoise = 7
17-03-17 21:19:20.988 -07 000000608 INF: Z Motor: After move to -0.140472, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:20.988 -07 000000608 INF: Z Motor: Settle wait time = 4562 ms, measure time = 106 ms (allowed 150 ms), total time = 4668 ms
17-03-17 21:19:20.988 -07 000000608 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 21:19:21.038 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4723 ms
17-03-17 21:19:21.038 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:19:21.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:21.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:21.038 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:21.038 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:21.038 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:19:21.038 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:21.038 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:19:21.038 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 21:19:21.058 -07 000000424 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 21:19:21.058 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:19:21.068 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:19:21.068 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:19:21.068 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:19:21.068 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 32 ms.
17-03-17 21:19:21.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:19:21.118 -07 000000569 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 21:19:21.318 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 21:19:21.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 21:19:21.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:19:21.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 21:19:21.358 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:19:21.358 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 21:19:21.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 21:19:21.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:19:21.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:21.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:19:21.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 21:19:21.458 -07 000000576 INF: Image SNR check: start
17-03-17 21:19:21.458 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:21.458 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:21.468 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:19:21.468 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:19:21.478 -07 000000576 INF: Image SNR check: pass  [peak (Max-Min)=58.43]
17-03-17 21:19:21.478 -07 000000576 INF: Autofocus start
17-03-17 21:19:21.478 -07 000000576 INF: MeasureProfile start
17-03-17 21:19:21.488 -07 000000576 INF: MeasureProfile done
17-03-17 21:19:21.488 -07 000000576 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:19:21.488 -07 000000576 INF: Autofocus finished
17-03-17 21:19:21.668 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:19:21.668 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:19:21.668 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.140476105499839. ----------
17-03-17 21:19:21.678 -07 000000610 INF: Cycle	49	Tile	1	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:19:21.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29211, sync = True, waitForSettling = True)
17-03-17 21:19:21.678 -07 000000610 INF: Z Motor: Moving to -0.133719 mm, started at -0.140476 mm, distance = 6.76 um
17-03-17 21:19:21.678 -07 000000610 INF: FPGA: Xmit ZDACW 29211\n [Z Motor]
17-03-17 21:19:21.678 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:19:21.688 -07 000000610 INF: FPGA: 'ZDACW 29211' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:19:21.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:21.688 -07 000000431 INF: FPGA: Recv ZDACR 29211
17-03-17 21:19:21.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:21.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:19:21.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:21.848 -07 000000424 INF: FPGA: Recv ZSGSRD 30100
17-03-17 21:19:21.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:21.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:21.858 -07 000000576 INF: FPGA: Recv ZSGSRD 30104
17-03-17 21:19:21.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:21.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:21.868 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:19:21.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:19:21.868 -07 000000429 INF: FPGA: Recv ZSGSRD 30107
17-03-17 21:19:21.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:21.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:21.878 -07 000000475 INF: FPGA: Recv ZSGSRD 30103
17-03-17 21:19:21.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:21.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:21.888 -07 000000012 INF: FPGA: Recv ZSGSRD 30098
17-03-17 21:19:21.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:21.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:21.898 -07 000000576 INF: FPGA: Recv ZSGSRD 30106
17-03-17 21:19:21.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:21.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:21.908 -07 000000431 INF: FPGA: Recv ZSGSRD 30106
17-03-17 21:19:21.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:21.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:21.918 -07 000000424 INF: FPGA: Recv ZSGSRD 30102
17-03-17 21:19:21.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:21.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:21.928 -07 000000459 INF: FPGA: Recv ZSGSRD 30103
17-03-17 21:19:21.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:21.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:21.938 -07 000000382 INF: FPGA: Recv ZSGSRD 30097
17-03-17 21:19:21.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:21.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:21.948 -07 000000458 INF: FPGA: Recv ZPIEZORD 25763
17-03-17 21:19:21.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:21.958 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.457 V. Piezo Error = -9.5 V.
17-03-17 21:19:21.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30103 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30103 (-132.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30097 (-132.9 uncal um), Max = 30107 (-132.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:19:21.958 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30103, posNoise = 4, negNoise = 6
17-03-17 21:19:21.958 -07 000000610 INF: Z Motor: After move to -0.133719, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:21.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:19:21.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:21.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:21.958 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:21.958 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:21.958 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:19:21.958 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:19:21.958 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:19:21.958 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:21.958 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:19:21.958 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 21:19:21.958 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:21.958 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:19:21.968 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:19:21.968 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:19:21.978 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:19:21.978 -07 000000012 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:19:21.978 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 21:19:21.978 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:19:21.988 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:19:21.988 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:19:21.998 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:19:21.998 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 36 ms.
17-03-17 21:19:21.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 29387 150\n [Camera]
17-03-17 21:19:22.198 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:19:22.628 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:19:22.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:19:22.628 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:22.628 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:22.628 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:19:22.628 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:19:22.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:19:22.628 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:22.628 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:22.628 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:19:22.818 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29387 816
17-03-17 21:19:22.968 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:19:23.018 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 21:19:23.018 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:19:23.018 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:23.018 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 21:19:23.018 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:19:23.018 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:23.028 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:23.028 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 21:19:23.028 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:23.028 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:19:23.178 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:19:23.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:19:23.178 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:23.178 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:23.178 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:19:23.178 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:19:23.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:19:23.178 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:23.178 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:23.178 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:19:23.368 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:19:23.368 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:19:23.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 29387 150' command took 2 ms to send, 1365 ms to get response, and 1370 ms overall
17-03-17 21:19:23.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:19:23.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.133711410114565. ------
17-03-17 21:19:23.488 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:23.498 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.14021 mm
17-03-17 21:19:23.498 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:19:23.498 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:23.498 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 120 ms to send, 3 ms to get response, and 123 ms overall
17-03-17 21:19:23.498 -07 000000476 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 21:19:23.498 -07 000000476 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 21:19:23.498 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30628, sync = True, waitForSettling = False)
17-03-17 21:19:23.498 -07 000000382 INF: Z Motor: Moving to -0.140206 mm, started at -0.133711 mm, distance = -6.49 um
17-03-17 21:19:23.498 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:19:23.508 -07 000000382 INF: FPGA: Xmit ZDACW 30628\n [Z Motor]
17-03-17 21:19:23.508 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:19:23.518 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:23.518 -07 000000382 INF: FPGA: 'ZDACW 30628' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:19:23.518 -07 000000438 INF: FPGA: Recv YRDPOS 122697
17-03-17 21:19:23.528 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:19:23.528 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:23.528 -07 000000476 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:23.528 -07 000000476 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:19:23.528 -07 000000476 INF: Y Motor: Moving 1331 steps2
17-03-17 21:19:23.528 -07 000000012 INF: FPGA: Recv ZDACR 30628
17-03-17 21:19:23.538 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:19:23.538 -07 000000382 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 21:19:23.538 -07 000000476 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:19:23.578 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 21:19:23.578 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 21:19:23.578 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:23.578 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 21:19:23.578 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 21:19:23.578 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:23.588 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:23.588 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:19:23.588 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 21:19:23.588 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:19:23.698 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:19:23.698 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 197 ms to get response, and 203 ms overall
17-03-17 21:19:23.908 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 21:19:23.908 -07 000000476 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:19:23.938 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:23.948 -07 000000458 INF: FPGA: Recv YRDPOS 124381
17-03-17 21:19:23.948 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:19:23.948 -07 000000476 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:23.948 -07 000000476 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 21:19:23.948 -07 000000476 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.832 mm, average velocity = 2.144 mm/sec
17-03-17 21:19:24.338 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.999021,
17-03-17 21:19:24.898 -07 000000476 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:24.898 -07 000000569 INF: FPGA: Recv YRDPOS 124382
17-03-17 21:19:24.908 -07 000000476 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:24.908 -07 000000476 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:24.928 -07 000000476 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:19:24.928 -07 000000476 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:19:24.928 -07 000000476 INF: Y Motor: Moved to 60.7334 after 1430 ms (table move)
17-03-17 21:19:24.928 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140206 mm (DAC = 30628)
17-03-17 21:19:24.928 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:24.938 -07 000000431 INF: FPGA: Recv ZSGSRD 31124
17-03-17 21:19:24.938 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:19:24.938 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:24.938 -07 000000569 INF: FPGA: Recv ZSGSRD 31114
17-03-17 21:19:24.948 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:24.948 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:24.948 -07 000000382 INF: FPGA: Recv ZSGSRD 31117
17-03-17 21:19:24.958 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:24.958 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:24.958 -07 000000576 INF: FPGA: Recv ZSGSRD 31119
17-03-17 21:19:24.968 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:24.968 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:24.968 -07 000000475 INF: FPGA: Recv ZSGSRD 31121
17-03-17 21:19:24.978 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:24.978 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:24.978 -07 000000012 INF: FPGA: Recv ZSGSRD 31119
17-03-17 21:19:24.988 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:24.988 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:24.988 -07 000000627 INF: FPGA: Recv ZSGSRD 31109
17-03-17 21:19:24.998 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:24.998 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:24.998 -07 000000458 INF: FPGA: Recv ZSGSRD 31114
17-03-17 21:19:25.008 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:25.008 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:25.008 -07 000000476 INF: FPGA: Recv ZSGSRD 31111
17-03-17 21:19:25.018 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:25.018 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:25.018 -07 000000438 INF: FPGA: Recv ZSGSRD 31116
17-03-17 21:19:25.028 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:25.028 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:25.028 -07 000000608 INF: FPGA: Recv ZPIEZORD 27115
17-03-17 21:19:25.038 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:25.038 -07 000000459 INF: Z Motor: Piezo is near 37.9 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.674 V. Piezo Error = -8.8 V.
17-03-17 21:19:25.038 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.2 um, Read 10 ADC samples: Avg = 31116 (-139.4 uncal um), Error = 0.8 uncal um, Median = 31116 (-139.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 31109 (-139.4 uncal um), Max = 31124 (-139.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:19:25.038 -07 000000459 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31116, posNoise = 8, negNoise = 7
17-03-17 21:19:25.038 -07 000000459 INF: Z Motor: After move to -0.140206, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:25.038 -07 000000459 INF: Z Motor: Settle wait time = 1433 ms, measure time = 104 ms (allowed 150 ms), total time = 1537 ms
17-03-17 21:19:25.038 -07 000000459 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:19:25.088 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 21:19:25.088 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:19:25.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:25.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:25.088 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:25.088 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:25.088 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:19:25.088 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:25.088 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:25.088 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:19:25.098 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:19:25.098 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:19:25.108 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:19:25.108 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:19:25.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:19:25.158 -07 000000476 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:19:25.358 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:19:25.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:19:25.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:19:25.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:19:25.398 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:19:25.398 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 21:19:25.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 21:19:25.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 21:19:25.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:25.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:19:25.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 21:19:25.498 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:25.498 -07 000000475 INF: Autofocus start
17-03-17 21:19:25.498 -07 000000475 INF: MeasureProfile start
17-03-17 21:19:25.498 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:25.508 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:19:25.508 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:19:25.508 -07 000000475 INF: MeasureProfile done
17-03-17 21:19:25.508 -07 000000475 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 21:19:25.508 -07 000000475 INF: Autofocus finished
17-03-17 21:19:25.708 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:19:25.708 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:19:25.708 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.140219137014169. ----------
17-03-17 21:19:25.708 -07 000000610 INF: Cycle	49	Tile	2	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:19:25.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29106, sync = True, waitForSettling = True)
17-03-17 21:19:25.718 -07 000000610 INF: Z Motor: Moving to -0.133239 mm, started at -0.140219 mm, distance = 6.98 um
17-03-17 21:19:25.718 -07 000000610 INF: FPGA: Xmit ZDACW 29106\n [Z Motor]
17-03-17 21:19:25.718 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:19:25.728 -07 000000610 INF: FPGA: 'ZDACW 29106' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:25.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:25.728 -07 000000512 INF: FPGA: Recv ZDACR 29106
17-03-17 21:19:25.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:25.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:19:25.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:25.888 -07 000000012 INF: FPGA: Recv ZSGSRD 30033
17-03-17 21:19:25.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:25.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:25.898 -07 000000576 INF: FPGA: Recv ZSGSRD 30031
17-03-17 21:19:25.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:25.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:25.908 -07 000000459 INF: FPGA: Recv ZSGSRD 30034
17-03-17 21:19:25.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:25.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:25.918 -07 000000475 INF: FPGA: Recv ZSGSRD 30029
17-03-17 21:19:25.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:25.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:25.928 -07 000000438 INF: FPGA: Recv ZSGSRD 30029
17-03-17 21:19:25.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:25.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:25.938 -07 000000480 INF: FPGA: Recv ZSGSRD 30034
17-03-17 21:19:25.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:25.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:25.948 -07 000000569 INF: FPGA: Recv ZSGSRD 30031
17-03-17 21:19:25.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:25.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:25.958 -07 000000512 INF: FPGA: Recv ZSGSRD 30033
17-03-17 21:19:25.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:25.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:25.968 -07 000000501 INF: FPGA: Recv ZSGSRD 30030
17-03-17 21:19:25.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:25.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:25.978 -07 000000415 INF: FPGA: Recv ZSGSRD 30030
17-03-17 21:19:25.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:25.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:25.988 -07 000000012 INF: FPGA: Recv ZPIEZORD 25659
17-03-17 21:19:25.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:25.998 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.6 V.
17-03-17 21:19:25.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30031 (-132.5 uncal um), Error = 0.8 uncal um, Median = 30031 (-132.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 30029 (-132.4 uncal um), Max = 30034 (-132.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 21:19:25.998 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30031, posNoise = 3, negNoise = 2
17-03-17 21:19:25.998 -07 000000610 INF: Z Motor: After move to -0.133239, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:25.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:19:25.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:25.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:25.998 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:25.998 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:25.998 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:19:25.998 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:25.998 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:19:25.998 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:19:25.998 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:25.998 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:19:25.998 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:19:25.998 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:19:26.008 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:19:26.008 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:19:26.008 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:19:26.008 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:19:26.018 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 21:19:26.018 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 21:19:26.018 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 21:19:26.018 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 21:19:26.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 29282 150\n [Camera]
17-03-17 21:19:26.228 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 21:19:26.648 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:19:26.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:19:26.648 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:26.658 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:19:26.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:19:26.658 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:26.658 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:26.658 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-17 21:19:26.658 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:26.658 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:19:26.848 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29282 814
17-03-17 21:19:26.868 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:19:26.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:19:26.988 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:19:27.058 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 21:19:27.058 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:19:27.058 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:27.058 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:19:27.058 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:19:27.058 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:27.058 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:27.058 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:27.058 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 21:19:27.068 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 21:19:27.198 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:19:27.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:19:27.198 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:27.198 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:19:27.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:19:27.198 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:27.208 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:19:27.208 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:27.208 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:27.208 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:19:27.388 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:19:27.388 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:19:27.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 29282 150' command took 2 ms to send, 1358 ms to get response, and 1369 ms overall
17-03-17 21:19:27.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:19:27.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.133248866840358. ------
17-03-17 21:19:27.398 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13961 mm
17-03-17 21:19:27.398 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:27.398 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:19:27.398 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:27.398 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 21:19:27.398 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30498, sync = True, waitForSettling = False)
17-03-17 21:19:27.398 -07 000000424 INF: Z Motor: Moving to -0.139611 mm, started at -0.133249 mm, distance = -6.36 um
17-03-17 21:19:27.398 -07 000000608 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 21:19:27.408 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:19:27.408 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:19:27.418 -07 000000424 INF: FPGA: Xmit ZDACW 30498\n [Z Motor]
17-03-17 21:19:27.418 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:19:27.428 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:27.428 -07 000000424 INF: FPGA: 'ZDACW 30498' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 21:19:27.428 -07 000000415 INF: FPGA: Recv YRDPOS 124382
17-03-17 21:19:27.438 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 21:19:27.438 -07 000000608 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:27.438 -07 000000608 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:19:27.438 -07 000000608 INF: Y Motor: Moving 1343 steps-20
17-03-17 21:19:27.438 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:27.548 -07 000000627 INF: FPGA: Recv ZDACR 30498
17-03-17 21:19:27.558 -07 000000424 INF: FPGA: 'ZDACR' command took 115 ms to send, 0 ms to get response, and 129 ms overall
17-03-17 21:19:27.558 -07 000000424 INF: Z Motor: MoveAbsStepped took 152 ms (did NOT wait for settling yet))
17-03-17 21:19:27.558 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:19:27.588 -07 000000012 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 21:19:27.588 -07 000000012 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:19:27.588 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:27.598 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 21:19:27.598 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:27.598 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:19:27.598 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:27.598 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:27.598 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:19:27.598 -07 000000012 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:19:27.608 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:19:27.608 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:19:27.928 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 21:19:27.928 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 497 ms overall
17-03-17 21:19:27.968 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:27.968 -07 000000458 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:19:27.978 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:19:27.978 -07 000000608 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:27.978 -07 000000608 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 21:19:27.978 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 498 ms, distance = 0.839 mm, average velocity = 1.685 mm/sec
17-03-17 21:19:28.928 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:28.928 -07 000000475 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:19:28.938 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:28.938 -07 000000608 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:28.958 -07 000000608 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:19:28.958 -07 000000608 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:19:28.958 -07 000000608 INF: Y Motor: Moved to 61.5640 after 1556 ms (table move)
17-03-17 21:19:28.958 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139611 mm (DAC = 30498)
17-03-17 21:19:28.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:28.968 -07 000000547 INF: FPGA: Recv ZSGSRD 31024
17-03-17 21:19:28.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 21:19:28.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:28.968 -07 000000480 INF: FPGA: Recv ZSGSRD 31024
17-03-17 21:19:28.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:19:28.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:28.978 -07 000000438 INF: FPGA: Recv ZSGSRD 31022
17-03-17 21:19:28.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:28.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:28.988 -07 000000382 INF: FPGA: Recv ZSGSRD 31027
17-03-17 21:19:28.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:28.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:28.998 -07 000000608 INF: FPGA: Recv ZSGSRD 31029
17-03-17 21:19:29.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:29.008 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:29.008 -07 000000424 INF: FPGA: Recv ZSGSRD 31025
17-03-17 21:19:29.018 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:29.018 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:29.018 -07 000000480 INF: FPGA: Recv ZSGSRD 31023
17-03-17 21:19:29.028 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:29.028 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:29.028 -07 000000429 INF: FPGA: Recv ZSGSRD 31018
17-03-17 21:19:29.038 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:29.038 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:29.038 -07 000000382 INF: FPGA: Recv ZSGSRD 31017
17-03-17 21:19:29.048 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:29.048 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:29.048 -07 000000476 INF: FPGA: Recv ZSGSRD 31017
17-03-17 21:19:29.058 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:29.058 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:29.058 -07 000000012 INF: FPGA: Recv ZPIEZORD 27026
17-03-17 21:19:29.068 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:29.068 -07 000000431 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.654 V. Piezo Error = -8.8 V.
17-03-17 21:19:29.068 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31023 (-138.8 uncal um), Error = 0.8 uncal um, Median = 31024 (-138.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31017 (-138.8 uncal um), Max = 31029 (-138.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:19:29.068 -07 000000431 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31023, posNoise = 6, negNoise = 6
17-03-17 21:19:29.068 -07 000000431 INF: Z Motor: After move to -0.139611, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:29.068 -07 000000431 INF: Z Motor: Settle wait time = 1559 ms, measure time = 103 ms (allowed 150 ms), total time = 1662 ms
17-03-17 21:19:29.068 -07 000000431 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:19:29.118 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1716 ms
17-03-17 21:19:29.118 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:19:29.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:29.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:29.118 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:29.118 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:29.118 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:19:29.118 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:29.118 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:29.128 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:19:29.128 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:19:29.128 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:19:29.138 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:19:29.138 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:19:29.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:19:29.188 -07 000000012 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:19:29.388 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:19:29.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:19:29.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:19:29.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:19:29.428 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:19:29.428 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 21:19:29.428 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 21:19:29.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:19:29.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:29.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:19:29.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:19:29.538 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:29.538 -07 000000475 INF: Autofocus start
17-03-17 21:19:29.538 -07 000000475 INF: MeasureProfile start
17-03-17 21:19:29.538 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:29.548 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:19:29.548 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:19:29.568 -07 000000475 INF: MeasureProfile done
17-03-17 21:19:29.568 -07 000000475 INF: X=32  Z correction [um]=0.1299841
17-03-17 21:19:29.568 -07 000000475 INF: Autofocus finished
17-03-17 21:19:29.698 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.019446,
17-03-17 21:19:29.748 -07 000000512 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:19:29.748 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 21:19:29.748 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139621685284985. ----------
17-03-17 21:19:29.748 -07 000000610 INF: Cycle	49	Tile	3	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:19:29.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29039, sync = True, waitForSettling = True)
17-03-17 21:19:29.758 -07 000000610 INF: Z Motor: Moving to -0.132932 mm, started at -0.139622 mm, distance = 6.69 um
17-03-17 21:19:29.768 -07 000000610 INF: FPGA: Xmit ZDACW 29039\n [Z Motor]
17-03-17 21:19:29.768 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:19:29.778 -07 000000610 INF: FPGA: 'ZDACW 29039' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:19:29.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:29.778 -07 000000480 INF: FPGA: Recv ZDACR 29039
17-03-17 21:19:29.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:19:29.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:19:29.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:29.938 -07 000000501 INF: FPGA: Recv ZSGSRD 29982
17-03-17 21:19:29.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:29.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:29.948 -07 000000382 INF: FPGA: Recv ZSGSRD 29985
17-03-17 21:19:29.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:29.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:29.958 -07 000000415 INF: FPGA: Recv ZSGSRD 29982
17-03-17 21:19:29.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:29.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:29.968 -07 000000569 INF: FPGA: Recv ZSGSRD 29980
17-03-17 21:19:29.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:29.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:29.978 -07 000000476 INF: FPGA: Recv ZSGSRD 29983
17-03-17 21:19:29.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:29.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:29.988 -07 000000475 INF: FPGA: Recv ZSGSRD 29984
17-03-17 21:19:29.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:29.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:29.998 -07 000000012 INF: FPGA: Recv ZSGSRD 29985
17-03-17 21:19:30.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:30.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:30.008 -07 000000547 INF: FPGA: Recv ZSGSRD 29986
17-03-17 21:19:30.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:30.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:30.018 -07 000000429 INF: FPGA: Recv ZSGSRD 29977
17-03-17 21:19:30.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:30.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:30.028 -07 000000627 INF: FPGA: Recv ZSGSRD 29981
17-03-17 21:19:30.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:30.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:30.038 -07 000000459 INF: FPGA: Recv ZPIEZORD 25633
17-03-17 21:19:30.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:30.048 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.431 V. Piezo Error = -9.6 V.
17-03-17 21:19:30.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29982 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29982 (-132.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29977 (-132.1 uncal um), Max = 29986 (-132.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:19:30.048 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29982, posNoise = 4, negNoise = 5
17-03-17 21:19:30.048 -07 000000610 INF: Z Motor: After move to -0.132932, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:30.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 21:19:30.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:30.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:30.048 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:30.048 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:30.048 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:19:30.048 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:30.048 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:19:30.048 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:19:30.048 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:30.048 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:19:30.048 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:19:30.048 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:19:30.048 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:19:30.048 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:19:30.058 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:19:30.058 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:19:30.058 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:19:30.058 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:19:30.068 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:19:30.068 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:19:30.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 29216 150\n [Camera]
17-03-17 21:19:30.268 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:19:30.698 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:19:30.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:19:30.708 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:30.708 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:19:30.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:19:30.708 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:30.708 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:30.708 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:19:30.718 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:30.718 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:19:30.898 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29216 814
17-03-17 21:19:31.048 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:19:31.088 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:19:31.088 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:19:31.088 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:31.088 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:19:31.088 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:19:31.088 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:31.088 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:31.088 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:19:31.088 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:31.098 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:19:31.248 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:19:31.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:19:31.258 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:31.258 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:19:31.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:19:31.258 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:31.258 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:31.258 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:19:31.258 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:31.258 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:19:31.438 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:19:31.448 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:19:31.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 29216 150' command took 2 ms to send, 1360 ms to get response, and 1376 ms overall
17-03-17 21:19:31.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:19:31.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132934080445412. ------
17-03-17 21:19:31.448 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:31.448 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13928 mm
17-03-17 21:19:31.448 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:19:31.448 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 21:19:31.448 -07 000000415 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 21:19:31.448 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 30425, sync = True, waitForSettling = False)
17-03-17 21:19:31.448 -07 000000012 INF: Z Motor: Moving to -0.139277 mm, started at -0.132934 mm, distance = -6.34 um
17-03-17 21:19:31.448 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:31.458 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:19:31.458 -07 000000012 INF: FPGA: Xmit ZDACW 30425\n [Z Motor]
17-03-17 21:19:31.458 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:19:31.468 -07 000000012 INF: FPGA: 'ZDACW 30425' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:31.468 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:31.468 -07 000000627 INF: FPGA: Recv YRDPOS 126083
17-03-17 21:19:31.478 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:19:31.478 -07 000000415 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 21:19:31.478 -07 000000415 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:31.478 -07 000000415 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:19:31.478 -07 000000415 INF: Y Motor: Moving 1342 steps-18
17-03-17 21:19:31.488 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:31.488 -07 000000382 INF: FPGA: Recv ZDACR 30425
17-03-17 21:19:31.498 -07 000000012 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 21:19:31.498 -07 000000012 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 21:19:31.498 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:19:31.658 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 21:19:31.658 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:19:31.658 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:31.658 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 21:19:31.658 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:19:31.658 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:31.658 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:31.658 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:31.658 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 21:19:31.668 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:19:31.678 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:19:31.678 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:19:31.868 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:19:31.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:19:31.868 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 21:19:31.868 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:19:31.908 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:31.908 -07 000000459 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:19:31.918 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:19:31.918 -07 000000415 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:31.918 -07 000000415 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 21:19:31.918 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.107 mm/sec
17-03-17 21:19:32.868 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:32.868 -07 000000480 INF: FPGA: Recv YRDPOS 127786
17-03-17 21:19:32.878 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:32.878 -07 000000415 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:32.898 -07 000000415 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:19:32.898 -07 000000415 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:19:32.898 -07 000000415 INF: Y Motor: Moved to 62.3955 after 1444 ms (table move)
17-03-17 21:19:32.898 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139277 mm (DAC = 30425)
17-03-17 21:19:32.898 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:32.908 -07 000000459 INF: FPGA: Recv ZSGSRD 30969
17-03-17 21:19:32.908 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:19:32.908 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:32.908 -07 000000627 INF: FPGA: Recv ZSGSRD 30977
17-03-17 21:19:32.918 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:32.918 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:32.918 -07 000000576 INF: FPGA: Recv ZSGSRD 30973
17-03-17 21:19:32.928 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:32.928 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:32.928 -07 000000012 INF: FPGA: Recv ZSGSRD 30972
17-03-17 21:19:32.938 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:32.938 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:32.938 -07 000000415 INF: FPGA: Recv ZSGSRD 30975
17-03-17 21:19:32.948 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:32.948 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:32.948 -07 000000608 INF: FPGA: Recv ZSGSRD 30974
17-03-17 21:19:32.958 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:32.958 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:32.958 -07 000000382 INF: FPGA: Recv ZSGSRD 30962
17-03-17 21:19:32.968 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:32.968 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:32.968 -07 000000547 INF: FPGA: Recv ZSGSRD 30970
17-03-17 21:19:32.978 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:32.978 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:32.978 -07 000000012 INF: FPGA: Recv ZSGSRD 30975
17-03-17 21:19:32.988 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:32.988 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:32.988 -07 000000424 INF: FPGA: Recv ZSGSRD 30966
17-03-17 21:19:32.998 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:32.998 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:32.998 -07 000000576 INF: FPGA: Recv ZPIEZORD 26954
17-03-17 21:19:33.008 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:33.008 -07 000000476 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -8.8 V.
17-03-17 21:19:33.008 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30971 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30972 (-138.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30962 (-138.4 uncal um), Max = 30977 (-138.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:19:33.008 -07 000000476 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30971, posNoise = 6, negNoise = 9
17-03-17 21:19:33.008 -07 000000476 INF: Z Motor: After move to -0.139277, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:33.008 -07 000000476 INF: Z Motor: Settle wait time = 1447 ms, measure time = 104 ms (allowed 150 ms), total time = 1551 ms
17-03-17 21:19:33.008 -07 000000476 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:19:33.058 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 21:19:33.058 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:19:33.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:33.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:33.068 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:33.068 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:19:33.068 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:33.068 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:33.068 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:33.068 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:19:33.068 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:19:33.068 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:19:33.078 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:19:33.078 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 21:19:33.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:19:33.128 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:19:33.328 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:19:33.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:19:33.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:19:33.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 21:19:33.368 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:19:33.368 -07 000000458 INF: FPGA: Recv CAMSNAP
17-03-17 21:19:33.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 21:19:33.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 21:19:33.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:33.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:19:33.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 21:19:33.468 -07 000000476 INF: Autofocus start
17-03-17 21:19:33.468 -07 000000476 INF: MeasureProfile start
17-03-17 21:19:33.468 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:33.468 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:33.478 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:19:33.478 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:19:33.478 -07 000000476 INF: MeasureProfile done
17-03-17 21:19:33.478 -07 000000476 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:19:33.478 -07 000000476 INF: Autofocus finished
17-03-17 21:19:33.678 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:19:33.678 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:19:33.678 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.139287626253614. ----------
17-03-17 21:19:33.678 -07 000000610 INF: Cycle	49	Tile	4	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:19:33.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28949, sync = True, waitForSettling = True)
17-03-17 21:19:33.688 -07 000000610 INF: Z Motor: Moving to -0.132520 mm, started at -0.139288 mm, distance = 6.77 um
17-03-17 21:19:33.688 -07 000000610 INF: FPGA: Xmit ZDACW 28949\n [Z Motor]
17-03-17 21:19:33.688 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:19:33.698 -07 000000610 INF: FPGA: 'ZDACW 28949' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:33.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:33.698 -07 000000438 INF: FPGA: Recv ZDACR 28949
17-03-17 21:19:33.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:33.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:19:33.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:33.858 -07 000000458 INF: FPGA: Recv ZSGSRD 29919
17-03-17 21:19:33.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:33.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:33.868 -07 000000431 INF: FPGA: Recv ZSGSRD 29920
17-03-17 21:19:33.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:33.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:33.878 -07 000000569 INF: FPGA: Recv ZSGSRD 29920
17-03-17 21:19:33.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:33.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:33.888 -07 000000012 INF: FPGA: Recv ZSGSRD 29909
17-03-17 21:19:33.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:33.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:33.898 -07 000000480 INF: FPGA: Recv ZSGSRD 29920
17-03-17 21:19:33.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:33.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:33.908 -07 000000627 INF: FPGA: Recv ZSGSRD 29920
17-03-17 21:19:33.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:33.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:33.918 -07 000000475 INF: FPGA: Recv ZSGSRD 29916
17-03-17 21:19:33.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:33.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:33.928 -07 000000415 INF: FPGA: Recv ZSGSRD 29917
17-03-17 21:19:33.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:33.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:33.938 -07 000000438 INF: FPGA: Recv ZSGSRD 29921
17-03-17 21:19:33.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:33.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:33.948 -07 000000382 INF: FPGA: Recv ZSGSRD 29917
17-03-17 21:19:33.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:33.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:33.958 -07 000000458 INF: FPGA: Recv ZPIEZORD 25570
17-03-17 21:19:33.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:33.968 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -9.5 V.
17-03-17 21:19:33.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29918 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29920 (-131.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29909 (-131.7 uncal um), Max = 29921 (-131.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:19:33.968 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29918, posNoise = 3, negNoise = 9
17-03-17 21:19:33.968 -07 000000610 INF: Z Motor: After move to -0.132520, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:33.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:19:33.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:33.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:33.968 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:33.968 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:33.968 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:19:33.968 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:19:33.968 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:19:33.968 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:33.968 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:19:33.968 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:19:33.968 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:33.968 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:19:33.968 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:19:33.978 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 21:19:33.978 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:19:33.978 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:19:33.988 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:19:33.988 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:19:33.988 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:19:33.988 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:19:33.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 29126 150\n [Camera]
17-03-17 21:19:34.188 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:19:34.618 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:19:34.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:19:34.618 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:34.618 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:34.618 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:19:34.618 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:19:34.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:19:34.618 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:34.618 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:34.618 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:19:34.808 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29126 814
17-03-17 21:19:34.958 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:19:35.008 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:19:35.008 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:19:35.008 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:35.008 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 21:19:35.008 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:19:35.008 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:35.008 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:19:35.008 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:19:35.008 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:19:35.018 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 21:19:35.058 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.033041,
17-03-17 21:19:35.168 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:19:35.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:19:35.168 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:19:35.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:19:35.168 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:35.168 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:35.168 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:19:35.168 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:35.168 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:35.168 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:19:35.358 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:19:35.358 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:19:35.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 29126 150' command took 2 ms to send, 1363 ms to get response, and 1370 ms overall
17-03-17 21:19:35.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:19:35.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132522930868339. ------
17-03-17 21:19:35.358 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:35.358 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13931 mm
17-03-17 21:19:35.358 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:19:35.368 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 21:19:35.368 -07 000000431 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 21:19:35.368 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:35.368 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30431, sync = True, waitForSettling = False)
17-03-17 21:19:35.368 -07 000000424 INF: Z Motor: Moving to -0.139304 mm, started at -0.132523 mm, distance = -6.78 um
17-03-17 21:19:35.368 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:35.368 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 21:19:35.368 -07 000000475 INF: FPGA: Recv YRDPOS 127787
17-03-17 21:19:35.488 -07 000000424 INF: FPGA: Xmit ZDACW 30431\n [Z Motor]
17-03-17 21:19:35.488 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-17 21:19:35.488 -07 000000431 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:35.488 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:19:35.498 -07 000000424 INF: FPGA: 'ZDACW 30431' command took 0 ms to send, 0 ms to get response, and 126 ms overall
17-03-17 21:19:35.498 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:19:35.498 -07 000000431 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:19:35.498 -07 000000431 INF: Y Motor: Moving 1339 steps-15
17-03-17 21:19:35.518 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:35.518 -07 000000576 INF: FPGA: Recv ZDACR 30431
17-03-17 21:19:35.528 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:19:35.528 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:19:35.528 -07 000000424 INF: Z Motor: MoveAbsStepped took 157 ms (did NOT wait for settling yet))
17-03-17 21:19:35.578 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 21:19:35.578 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:19:35.578 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:35.578 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 21:19:35.578 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:19:35.578 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:35.578 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:35.578 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:19:35.578 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 21:19:35.588 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 21:19:35.698 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:19:35.698 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 328 ms overall
17-03-17 21:19:35.898 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:19:35.898 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 406 ms overall
17-03-17 21:19:35.938 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:35.938 -07 000000475 INF: FPGA: Recv YRDPOS 129483
17-03-17 21:19:35.948 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:19:35.948 -07 000000431 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:35.948 -07 000000431 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 21:19:35.948 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.837 mm, average velocity = 2.057 mm/sec
17-03-17 21:19:36.868 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:19:36.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:19:36.898 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:36.898 -07 000000382 INF: FPGA: Recv YRDPOS 129484
17-03-17 21:19:36.908 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:36.908 -07 000000431 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:36.928 -07 000000431 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:19:36.928 -07 000000431 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:19:36.928 -07 000000431 INF: Y Motor: Moved to 63.2246 after 1562 ms (table move)
17-03-17 21:19:36.928 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139304 mm (DAC = 30431)
17-03-17 21:19:36.928 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:36.938 -07 000000512 INF: FPGA: Recv ZSGSRD 30981
17-03-17 21:19:36.938 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:19:36.938 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:36.938 -07 000000569 INF: FPGA: Recv ZSGSRD 30971
17-03-17 21:19:36.948 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:36.948 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:36.948 -07 000000480 INF: FPGA: Recv ZSGSRD 30970
17-03-17 21:19:36.958 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:36.958 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:36.958 -07 000000424 INF: FPGA: Recv ZSGSRD 30975
17-03-17 21:19:36.968 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:36.968 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:36.968 -07 000000459 INF: FPGA: Recv ZSGSRD 30976
17-03-17 21:19:36.978 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:36.978 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:36.978 -07 000000608 INF: FPGA: Recv ZSGSRD 30978
17-03-17 21:19:36.988 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:36.988 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:36.988 -07 000000626 INF: FPGA: Recv ZSGSRD 30983
17-03-17 21:19:36.998 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:36.998 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:36.998 -07 000000431 INF: FPGA: Recv ZSGSRD 30971
17-03-17 21:19:37.008 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:37.008 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:37.008 -07 000000608 INF: FPGA: Recv ZSGSRD 30968
17-03-17 21:19:37.018 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:37.018 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:37.018 -07 000000438 INF: FPGA: Recv ZSGSRD 30973
17-03-17 21:19:37.028 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:37.028 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:37.028 -07 000000569 INF: FPGA: Recv ZPIEZORD 26992
17-03-17 21:19:37.038 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:37.038 -07 000000547 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -8.8 V.
17-03-17 21:19:37.038 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30975 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30974 (-138.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30968 (-138.5 uncal um), Max = 30983 (-138.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:19:37.038 -07 000000547 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30975, posNoise = 8, negNoise = 7
17-03-17 21:19:37.038 -07 000000547 INF: Z Motor: After move to -0.139304, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:37.038 -07 000000547 INF: Z Motor: Settle wait time = 1564 ms, measure time = 103 ms (allowed 150 ms), total time = 1667 ms
17-03-17 21:19:37.038 -07 000000547 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:19:37.088 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1720 ms
17-03-17 21:19:37.088 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:19:37.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:37.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:37.088 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:37.088 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:19:37.088 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:37.088 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:37.088 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:37.088 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:19:37.098 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:19:37.098 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:19:37.108 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:19:37.108 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:19:37.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:19:37.148 -07 000000431 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:19:37.348 -07 000000012 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:19:37.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:19:37.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:19:37.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:19:37.388 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:19:37.388 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 21:19:37.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 21:19:37.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:19:37.468 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:37.468 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:19:37.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:19:37.488 -07 000000547 INF: Autofocus start
17-03-17 21:19:37.488 -07 000000547 INF: MeasureProfile start
17-03-17 21:19:37.488 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:37.488 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:37.498 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:19:37.498 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:19:37.498 -07 000000547 INF: MeasureProfile done
17-03-17 21:19:37.498 -07 000000547 INF: X=-7  Z correction [um]=-0.03747771
17-03-17 21:19:37.498 -07 000000547 INF: Autofocus finished
17-03-17 21:19:37.698 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:19:37.698 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:19:37.698 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.139313323102181. ----------
17-03-17 21:19:37.698 -07 000000610 INF: Cycle	49	Tile	5	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:19:37.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28936, sync = True, waitForSettling = True)
17-03-17 21:19:37.708 -07 000000610 INF: Z Motor: Moving to -0.132461 mm, started at -0.139313 mm, distance = 6.85 um
17-03-17 21:19:37.708 -07 000000610 INF: FPGA: Xmit ZDACW 28936\n [Z Motor]
17-03-17 21:19:37.708 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:19:37.718 -07 000000610 INF: FPGA: 'ZDACW 28936' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:37.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:37.718 -07 000000459 INF: FPGA: Recv ZDACR 28936
17-03-17 21:19:37.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:37.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:19:37.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:37.878 -07 000000382 INF: FPGA: Recv ZSGSRD 29907
17-03-17 21:19:37.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:37.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:37.888 -07 000000012 INF: FPGA: Recv ZSGSRD 29906
17-03-17 21:19:37.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:37.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:37.898 -07 000000424 INF: FPGA: Recv ZSGSRD 29913
17-03-17 21:19:37.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:37.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:37.908 -07 000000547 INF: FPGA: Recv ZSGSRD 29908
17-03-17 21:19:37.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:37.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:37.918 -07 000000480 INF: FPGA: Recv ZSGSRD 29912
17-03-17 21:19:37.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:37.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:37.928 -07 000000429 INF: FPGA: Recv ZSGSRD 29908
17-03-17 21:19:37.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:37.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:37.938 -07 000000476 INF: FPGA: Recv ZSGSRD 29910
17-03-17 21:19:37.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:37.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:37.948 -07 000000424 INF: FPGA: Recv ZSGSRD 29909
17-03-17 21:19:37.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:37.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:37.958 -07 000000012 INF: FPGA: Recv ZSGSRD 29906
17-03-17 21:19:37.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:37.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:37.968 -07 000000608 INF: FPGA: Recv ZSGSRD 29909
17-03-17 21:19:37.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:37.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:37.978 -07 000000576 INF: FPGA: Recv ZPIEZORD 25609
17-03-17 21:19:37.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:37.988 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.415 V. Piezo Error = -9.4 V.
17-03-17 21:19:37.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29909 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29908 (-131.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29906 (-131.7 uncal um), Max = 29913 (-131.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:19:37.988 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29909, posNoise = 4, negNoise = 3
17-03-17 21:19:37.988 -07 000000610 INF: Z Motor: After move to -0.132461, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:37.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:19:37.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:37.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:37.988 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:37.988 -07 000000458 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:37.988 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:19:37.988 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:37.988 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:19:37.988 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:19:37.988 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:19:37.988 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:19:37.988 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 21:19:37.988 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:19:37.998 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:19:37.998 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:19:37.998 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:19:37.998 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:19:38.008 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:19:38.008 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:19:38.008 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:19:38.008 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:19:38.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 29112 150\n [Camera]
17-03-17 21:19:38.208 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:19:38.638 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:19:38.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:19:38.638 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:38.638 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:19:38.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:19:38.638 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:38.648 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:38.648 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-17 21:19:38.648 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:38.648 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:19:38.828 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29112 814
17-03-17 21:19:38.978 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:19:39.018 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 21:19:39.018 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 21:19:39.018 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:39.018 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:19:39.018 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 21:19:39.018 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:39.028 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:39.028 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:39.028 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:19:39.038 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:19:39.188 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:19:39.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:19:39.188 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:39.188 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:39.188 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 21:19:39.188 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:19:39.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:19:39.188 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:39.188 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:39.188 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:19:39.378 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:19:39.378 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:19:39.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 29112 150' command took 2 ms to send, 1363 ms to get response, and 1370 ms overall
17-03-17 21:19:39.378 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:19:39.378 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.224609375, Z-Position -0.132465112959063. ------
17-03-17 21:19:39.378 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:39.388 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13895 mm
17-03-17 21:19:39.388 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:19:39.388 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 21:19:39.388 -07 000000547 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 21:19:39.388 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:39.388 -07 000000458 INF: Z Motor: Entering MoveAbsStepped (DAC = 30353, sync = True, waitForSettling = False)
17-03-17 21:19:39.388 -07 000000458 INF: Z Motor: Moving to -0.138947 mm, started at -0.132465 mm, distance = -6.48 um
17-03-17 21:19:39.398 -07 000000458 INF: FPGA: Xmit ZDACW 30353\n [Z Motor]
17-03-17 21:19:39.398 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:39.398 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:19:39.408 -07 000000458 INF: FPGA: 'ZDACW 30353' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:19:39.408 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:39.408 -07 000000569 INF: FPGA: Recv YRDPOS 129484
17-03-17 21:19:39.418 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:19:39.418 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 21:19:39.528 -07 000000547 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:39.528 -07 000000547 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:19:39.528 -07 000000547 INF: Y Motor: Moving 1341 steps-17
17-03-17 21:19:39.538 -07 000000458 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:39.538 -07 000000576 INF: FPGA: Recv ZDACR 30353
17-03-17 21:19:39.548 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:19:39.548 -07 000000458 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 139 ms overall
17-03-17 21:19:39.548 -07 000000458 INF: Z Motor: MoveAbsStepped took 156 ms (did NOT wait for settling yet))
17-03-17 21:19:39.578 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 21:19:39.578 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:19:39.578 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:39.578 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:19:39.578 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:19:39.578 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:39.588 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:39.588 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:39.588 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:19:39.588 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:19:39.618 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:19:39.618 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 114 ms to send, 82 ms to get response, and 222 ms overall
17-03-17 21:19:39.918 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 21:19:39.918 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 21:19:39.958 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:39.958 -07 000000501 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:19:39.968 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:19:39.968 -07 000000547 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:39.968 -07 000000547 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 21:19:39.968 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.838 mm, average velocity = 2.132 mm/sec
17-03-17 21:19:40.418 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.030322,
17-03-17 21:19:40.918 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:40.918 -07 000000569 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:19:40.928 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:40.928 -07 000000547 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:40.948 -07 000000547 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:19:40.948 -07 000000547 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:19:40.948 -07 000000547 INF: Y Motor: Moved to 64.0571 after 1559 ms (table move)
17-03-17 21:19:40.948 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138947 mm (DAC = 30353)
17-03-17 21:19:40.948 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:40.948 -07 000000438 INF: FPGA: Recv ZSGSRD 30913
17-03-17 21:19:40.958 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:19:40.958 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:40.958 -07 000000382 INF: FPGA: Recv ZSGSRD 30917
17-03-17 21:19:40.968 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:40.968 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:40.968 -07 000000459 INF: FPGA: Recv ZSGSRD 30909
17-03-17 21:19:40.978 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:40.978 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:40.978 -07 000000608 INF: FPGA: Recv ZSGSRD 30924
17-03-17 21:19:40.988 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:40.988 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:40.988 -07 000000547 INF: FPGA: Recv ZSGSRD 30925
17-03-17 21:19:40.998 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:40.998 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:40.998 -07 000000438 INF: FPGA: Recv ZSGSRD 30922
17-03-17 21:19:41.008 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:41.008 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:41.008 -07 000000415 INF: FPGA: Recv ZSGSRD 30918
17-03-17 21:19:41.018 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:41.018 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:41.018 -07 000000480 INF: FPGA: Recv ZSGSRD 30913
17-03-17 21:19:41.028 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:41.028 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:41.028 -07 000000431 INF: FPGA: Recv ZSGSRD 30916
17-03-17 21:19:41.038 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:41.038 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:41.038 -07 000000576 INF: FPGA: Recv ZSGSRD 30922
17-03-17 21:19:41.048 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:41.048 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:41.048 -07 000000424 INF: FPGA: Recv ZPIEZORD 26945
17-03-17 21:19:41.058 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:41.058 -07 000000512 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.632 V. Piezo Error = -8.8 V.
17-03-17 21:19:41.058 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30918 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30918 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30909 (-138.1 uncal um), Max = 30925 (-138.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:19:41.058 -07 000000512 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30918, posNoise = 7, negNoise = 9
17-03-17 21:19:41.058 -07 000000512 INF: Z Motor: After move to -0.138947, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:41.058 -07 000000512 INF: Z Motor: Settle wait time = 1561 ms, measure time = 105 ms (allowed 150 ms), total time = 1666 ms
17-03-17 21:19:41.058 -07 000000512 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:19:41.108 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1720 ms
17-03-17 21:19:41.108 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:19:41.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:41.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:41.118 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:19:41.118 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:41.118 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:41.118 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:41.118 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:19:41.118 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:19:41.118 -07 000000458 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:19:41.118 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:19:41.128 -07 000000458 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 21:19:41.128 -07 000000458 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 21:19:41.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:19:41.178 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:19:41.378 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:19:41.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:19:41.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:19:41.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:19:41.418 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:19:41.418 -07 000000476 INF: FPGA: Recv CAMSNAP
17-03-17 21:19:41.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 21:19:41.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:19:41.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:41.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:19:41.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:19:41.518 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:41.518 -07 000000438 INF: Autofocus start
17-03-17 21:19:41.518 -07 000000438 INF: MeasureProfile start
17-03-17 21:19:41.518 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:41.528 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:19:41.528 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:19:41.538 -07 000000438 INF: MeasureProfile done
17-03-17 21:19:41.538 -07 000000438 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:19:41.538 -07 000000438 INF: Autofocus finished
17-03-17 21:19:41.728 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:19:41.728 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 21:19:41.728 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.1389471430101. ----------
17-03-17 21:19:41.738 -07 000000610 INF: Cycle	49	Tile	6	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:19:41.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28861, sync = True, waitForSettling = True)
17-03-17 21:19:41.738 -07 000000610 INF: Z Motor: Moving to -0.132117 mm, started at -0.138947 mm, distance = 6.83 um
17-03-17 21:19:41.738 -07 000000610 INF: FPGA: Xmit ZDACW 28861\n [Z Motor]
17-03-17 21:19:41.738 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 21:19:41.748 -07 000000610 INF: FPGA: 'ZDACW 28861' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:19:41.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:41.748 -07 000000475 INF: FPGA: Recv ZDACR 28861
17-03-17 21:19:41.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:41.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:19:41.868 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:19:41.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:19:41.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:41.908 -07 000000547 INF: FPGA: Recv ZSGSRD 29859
17-03-17 21:19:41.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:41.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:41.918 -07 000000459 INF: FPGA: Recv ZSGSRD 29860
17-03-17 21:19:41.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:41.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:41.928 -07 000000627 INF: FPGA: Recv ZSGSRD 29848
17-03-17 21:19:41.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:41.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:41.938 -07 000000576 INF: FPGA: Recv ZSGSRD 29852
17-03-17 21:19:41.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:41.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:41.948 -07 000000476 INF: FPGA: Recv ZSGSRD 29854
17-03-17 21:19:41.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:41.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:41.958 -07 000000424 INF: FPGA: Recv ZSGSRD 29853
17-03-17 21:19:41.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:41.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:41.968 -07 000000429 INF: FPGA: Recv ZSGSRD 29848
17-03-17 21:19:41.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:41.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:41.978 -07 000000415 INF: FPGA: Recv ZSGSRD 29855
17-03-17 21:19:41.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:41.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:41.988 -07 000000438 INF: FPGA: Recv ZSGSRD 29853
17-03-17 21:19:41.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:41.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:41.998 -07 000000569 INF: FPGA: Recv ZSGSRD 29862
17-03-17 21:19:42.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:42.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:42.008 -07 000000431 INF: FPGA: Recv ZPIEZORD 25587
17-03-17 21:19:42.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:42.018 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.404 V. Piezo Error = -9.4 V.
17-03-17 21:19:42.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29854 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29854 (-131.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29848 (-131.3 uncal um), Max = 29862 (-131.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:19:42.018 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29854, posNoise = 8, negNoise = 6
17-03-17 21:19:42.018 -07 000000610 INF: Z Motor: After move to -0.132117, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:42.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:19:42.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:42.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:42.018 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:42.018 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:19:42.018 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:42.018 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:19:42.018 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:19:42.018 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:42.018 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:42.018 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:19:42.018 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:19:42.018 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:19:42.028 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:19:42.028 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:19:42.028 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:19:42.028 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:19:42.038 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:19:42.038 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:19:42.038 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:19:42.038 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:19:42.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 29037 150\n [Camera]
17-03-17 21:19:42.238 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:19:42.668 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:19:42.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:19:42.668 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:42.668 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:42.668 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:19:42.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:19:42.668 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:19:42.668 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:42.678 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:42.678 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:19:42.858 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29037 814
17-03-17 21:19:43.008 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:19:43.058 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 21:19:43.058 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 21:19:43.058 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:43.058 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:43.058 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:19:43.068 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 21:19:43.068 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:19:43.068 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:43.068 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:43.078 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 21:19:43.218 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:19:43.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:19:43.218 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:43.218 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:19:43.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:19:43.218 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:43.218 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:43.218 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:19:43.228 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:43.228 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 21:19:43.408 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:19:43.408 -07 000000476 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:19:43.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 29037 150' command took 2 ms to send, 1364 ms to get response, and 1371 ms overall
17-03-17 21:19:43.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:19:43.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.132111781291267. ------
17-03-17 21:19:43.408 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:43.408 -07 000000458 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13872 mm
17-03-17 21:19:43.408 -07 000000458 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:19:43.418 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 21:19:43.418 -07 000000429 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 21:19:43.418 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:43.418 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:19:43.418 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:43.418 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 30303, sync = True, waitForSettling = False)
17-03-17 21:19:43.418 -07 000000475 INF: Z Motor: Moving to -0.138718 mm, started at -0.132112 mm, distance = -6.61 um
17-03-17 21:19:43.418 -07 000000476 INF: FPGA: Recv YRDPOS 131189
17-03-17 21:19:43.428 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:19:43.428 -07 000000429 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:43.428 -07 000000429 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:19:43.428 -07 000000429 INF: Y Motor: Moving 1337 steps-11
17-03-17 21:19:43.428 -07 000000475 INF: FPGA: Xmit ZDACW 30303\n [Z Motor]
17-03-17 21:19:43.428 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:19:43.438 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:19:43.438 -07 000000475 INF: FPGA: 'ZDACW 30303' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:19:43.448 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:19:43.458 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:43.458 -07 000000382 INF: FPGA: Recv ZDACR 30303
17-03-17 21:19:43.468 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:19:43.468 -07 000000475 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 21:19:43.598 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 21:19:43.598 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 21:19:43.598 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:43.608 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:43.608 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:19:43.618 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:19:43.618 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:19:43.618 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:43.618 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:43.618 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:19:43.638 -07 000000512 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:19:43.638 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 21:19:43.818 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:19:43.818 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:19:43.858 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:43.858 -07 000000012 INF: FPGA: Recv YRDPOS 132873
17-03-17 21:19:43.868 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:19:43.868 -07 000000429 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:43.868 -07 000000429 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 21:19:43.868 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 21:19:44.818 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:44.818 -07 000000382 INF: FPGA: Recv YRDPOS 132873
17-03-17 21:19:44.828 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:44.828 -07 000000429 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:44.848 -07 000000429 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:19:44.848 -07 000000429 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:19:44.848 -07 000000429 INF: Y Motor: Moved to 64.8794 after 1431 ms (table move)
17-03-17 21:19:44.848 -07 000000458 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138718 mm (DAC = 30303)
17-03-17 21:19:44.848 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:44.858 -07 000000012 INF: FPGA: Recv ZSGSRD 30893
17-03-17 21:19:44.858 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:19:44.858 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:44.858 -07 000000415 INF: FPGA: Recv ZSGSRD 30890
17-03-17 21:19:44.868 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:19:44.868 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:44.868 -07 000000576 INF: FPGA: Recv ZSGSRD 30884
17-03-17 21:19:44.878 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:44.878 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:44.878 -07 000000424 INF: FPGA: Recv ZSGSRD 30885
17-03-17 21:19:44.888 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:44.888 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:44.888 -07 000000429 INF: FPGA: Recv ZSGSRD 30885
17-03-17 21:19:44.898 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:44.898 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:44.898 -07 000000431 INF: FPGA: Recv ZSGSRD 30892
17-03-17 21:19:44.908 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:44.908 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:44.908 -07 000000476 INF: FPGA: Recv ZSGSRD 30885
17-03-17 21:19:44.918 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:44.918 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:44.918 -07 000000547 INF: FPGA: Recv ZSGSRD 30874
17-03-17 21:19:44.928 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:44.928 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:44.928 -07 000000415 INF: FPGA: Recv ZSGSRD 30887
17-03-17 21:19:44.938 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:44.938 -07 000000458 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:44.938 -07 000000627 INF: FPGA: Recv ZSGSRD 30879
17-03-17 21:19:44.948 -07 000000458 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:44.948 -07 000000458 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:44.948 -07 000000501 INF: FPGA: Recv ZPIEZORD 26906
17-03-17 21:19:44.958 -07 000000458 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:44.958 -07 000000458 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.624 V. Piezo Error = -8.8 V.
17-03-17 21:19:44.958 -07 000000458 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30885 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30885 (-137.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30874 (-137.9 uncal um), Max = 30893 (-138.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 21:19:44.958 -07 000000458 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30885, posNoise = 8, negNoise = 11
17-03-17 21:19:44.958 -07 000000458 INF: Z Motor: After move to -0.138718, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:44.958 -07 000000458 INF: Z Motor: Settle wait time = 1434 ms, measure time = 103 ms (allowed 150 ms), total time = 1537 ms
17-03-17 21:19:44.958 -07 000000458 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:19:45.008 -07 000000458 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 21:19:45.008 -07 000000458 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:19:45.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:45.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:45.008 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:45.008 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:19:45.008 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:45.008 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:45.008 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:45.008 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:19:45.018 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:19:45.018 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:19:45.028 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:19:45.028 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 21:19:45.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:19:45.078 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:19:45.278 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:19:45.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:19:45.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:19:45.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 21:19:45.318 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:19:45.318 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 21:19:45.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 21:19:45.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 21:19:45.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:45.398 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:19:45.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 21:19:45.418 -07 000000480 INF: Autofocus start
17-03-17 21:19:45.418 -07 000000480 INF: MeasureProfile start
17-03-17 21:19:45.418 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:45.418 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:45.428 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:19:45.428 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:19:45.438 -07 000000480 INF: MeasureProfile done
17-03-17 21:19:45.438 -07 000000480 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:19:45.438 -07 000000480 INF: Autofocus finished
17-03-17 21:19:45.628 -07 000000626 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:19:45.628 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 21:19:45.638 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.138735144009422. ----------
17-03-17 21:19:45.638 -07 000000610 INF: Cycle	49	Tile	7	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:19:45.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28827, sync = True, waitForSettling = True)
17-03-17 21:19:45.638 -07 000000610 INF: Z Motor: Moving to -0.131962 mm, started at -0.138735 mm, distance = 6.77 um
17-03-17 21:19:45.638 -07 000000610 INF: FPGA: Xmit ZDACW 28827\n [Z Motor]
17-03-17 21:19:45.638 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:19:45.648 -07 000000610 INF: FPGA: 'ZDACW 28827' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:19:45.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:45.648 -07 000000512 INF: FPGA: Recv ZDACR 28827
17-03-17 21:19:45.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:45.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:19:45.778 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.053471,
17-03-17 21:19:45.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:45.808 -07 000000438 INF: FPGA: Recv ZSGSRD 29827
17-03-17 21:19:45.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:45.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:45.818 -07 000000626 INF: FPGA: Recv ZSGSRD 29835
17-03-17 21:19:45.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:45.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:45.838 -07 000000429 INF: FPGA: Recv ZSGSRD 29830
17-03-17 21:19:45.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:19:45.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:45.848 -07 000000415 INF: FPGA: Recv ZSGSRD 29826
17-03-17 21:19:45.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:45.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:45.858 -07 000000547 INF: FPGA: Recv ZSGSRD 29830
17-03-17 21:19:45.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:45.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:45.868 -07 000000431 INF: FPGA: Recv ZSGSRD 29832
17-03-17 21:19:45.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:45.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:45.878 -07 000000476 INF: FPGA: Recv ZSGSRD 29826
17-03-17 21:19:45.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:45.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:45.888 -07 000000569 INF: FPGA: Recv ZSGSRD 29830
17-03-17 21:19:45.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:45.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:45.898 -07 000000608 INF: FPGA: Recv ZSGSRD 29834
17-03-17 21:19:45.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:45.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:45.908 -07 000000475 INF: FPGA: Recv ZSGSRD 29836
17-03-17 21:19:45.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:45.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:45.918 -07 000000459 INF: FPGA: Recv ZPIEZORD 25571
17-03-17 21:19:45.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:45.928 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.399 V. Piezo Error = -9.4 V.
17-03-17 21:19:45.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29831 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29830 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29826 (-131.1 uncal um), Max = 29836 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:19:45.928 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29831, posNoise = 5, negNoise = 5
17-03-17 21:19:45.928 -07 000000610 INF: Z Motor: After move to -0.131962, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:45.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-17 21:19:45.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:45.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:45.928 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:45.928 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:19:45.928 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:45.928 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:19:45.928 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:19:45.928 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:45.928 -07 000000476 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:45.928 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:19:45.928 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:19:45.928 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:19:45.938 -07 000000476 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:19:45.938 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:19:45.938 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:19:45.938 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:19:45.948 -07 000000476 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:19:45.948 -07 000000476 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:19:45.948 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:19:45.948 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:19:45.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 29004 150\n [Camera]
17-03-17 21:19:46.158 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:19:46.588 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:19:46.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:19:46.588 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:46.588 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:46.588 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:19:46.588 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:19:46.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:19:46.588 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:46.588 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:46.588 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:19:46.778 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29004 814
17-03-17 21:19:46.868 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:19:46.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:19:46.928 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 967
17-03-17 21:19:46.958 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 21:19:46.958 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 21:19:46.958 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:46.958 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:19:46.958 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:19:46.958 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:46.968 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:19:46.968 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:19:46.968 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:19:46.978 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 21:19:47.128 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:19:47.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:19:47.138 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:47.138 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:47.138 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:19:47.138 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:19:47.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:19:47.138 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:47.138 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:47.138 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:19:47.328 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:19:47.328 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:19:47.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 29004 150' command took 2 ms to send, 1364 ms to get response, and 1382 ms overall
17-03-17 21:19:47.328 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:19:47.328 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.131964024412006. ------
17-03-17 21:19:47.458 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:47.458 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13853 mm
17-03-17 21:19:47.458 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:19:47.458 -07 000000012 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 21:19:47.458 -07 000000012 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 21:19:47.458 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:47.458 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30261, sync = True, waitForSettling = False)
17-03-17 21:19:47.458 -07 000000480 INF: Z Motor: Moving to -0.138526 mm, started at -0.131964 mm, distance = -6.56 um
17-03-17 21:19:47.468 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:19:47.468 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:47.468 -07 000000459 INF: FPGA: Recv YRDPOS 132873
17-03-17 21:19:47.478 -07 000000480 INF: FPGA: Xmit ZDACW 30261\n [Z Motor]
17-03-17 21:19:47.478 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:19:47.478 -07 000000012 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:47.478 -07 000000012 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:19:47.478 -07 000000012 INF: Y Motor: Moving 1349 steps-27
17-03-17 21:19:47.478 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:19:47.488 -07 000000480 INF: FPGA: 'ZDACW 30261' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:19:47.488 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:19:47.498 -07 000000012 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:19:47.508 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:47.508 -07 000000424 INF: FPGA: Recv ZDACR 30261
17-03-17 21:19:47.518 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:19:47.518 -07 000000480 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 21:19:47.528 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 21:19:47.528 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:19:47.528 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:47.528 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:19:47.528 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:19:47.528 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:47.538 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:47.538 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:19:47.538 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 21:19:47.538 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:19:47.688 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:19:47.688 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:19:47.868 -07 000000476 INF: FPGA: Recv YMVTILE
17-03-17 21:19:47.868 -07 000000012 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:19:47.908 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:47.908 -07 000000512 INF: FPGA: Recv YRDPOS 134583
17-03-17 21:19:47.918 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:19:47.918 -07 000000012 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:47.918 -07 000000012 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 21:19:47.918 -07 000000012 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 21:19:48.868 -07 000000012 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:48.868 -07 000000424 INF: FPGA: Recv YRDPOS 134583
17-03-17 21:19:48.878 -07 000000012 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:48.878 -07 000000012 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:48.898 -07 000000012 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:19:48.898 -07 000000012 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:19:48.898 -07 000000012 INF: Y Motor: Moved to 65.7144 after 1442 ms (table move)
17-03-17 21:19:48.898 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138526 mm (DAC = 30261)
17-03-17 21:19:48.908 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:48.908 -07 000000415 INF: FPGA: Recv ZSGSRD 30856
17-03-17 21:19:48.918 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:48.918 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:48.918 -07 000000424 INF: FPGA: Recv ZSGSRD 30852
17-03-17 21:19:48.928 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:48.928 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:48.928 -07 000000626 INF: FPGA: Recv ZSGSRD 30846
17-03-17 21:19:48.938 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:48.938 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:48.938 -07 000000512 INF: FPGA: Recv ZSGSRD 30861
17-03-17 21:19:48.948 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:48.948 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:48.948 -07 000000458 INF: FPGA: Recv ZSGSRD 30854
17-03-17 21:19:48.958 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:48.958 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:48.958 -07 000000459 INF: FPGA: Recv ZSGSRD 30851
17-03-17 21:19:48.968 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:48.968 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:48.968 -07 000000547 INF: FPGA: Recv ZSGSRD 30849
17-03-17 21:19:48.978 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:48.978 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:48.978 -07 000000012 INF: FPGA: Recv ZSGSRD 30847
17-03-17 21:19:48.988 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:48.988 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:48.988 -07 000000569 INF: FPGA: Recv ZSGSRD 30852
17-03-17 21:19:48.998 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:48.998 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:48.998 -07 000000438 INF: FPGA: Recv ZSGSRD 30855
17-03-17 21:19:49.008 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:49.008 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:49.008 -07 000000501 INF: FPGA: Recv ZPIEZORD 26903
17-03-17 21:19:49.018 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:49.018 -07 000000382 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.618 V. Piezo Error = -8.7 V.
17-03-17 21:19:49.018 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30852 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30852 (-137.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30846 (-137.7 uncal um), Max = 30861 (-137.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:19:49.018 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30852, posNoise = 9, negNoise = 6
17-03-17 21:19:49.018 -07 000000382 INF: Z Motor: After move to -0.138526, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:49.018 -07 000000382 INF: Z Motor: Settle wait time = 1444 ms, measure time = 111 ms (allowed 150 ms), total time = 1555 ms
17-03-17 21:19:49.018 -07 000000382 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 21:19:49.058 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 21:19:49.058 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:19:49.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:49.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:49.058 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:49.058 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:19:49.058 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:49.058 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:49.058 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:49.058 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:19:49.068 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:19:49.068 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:19:49.068 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:19:49.068 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:19:49.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:19:49.118 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:19:49.318 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:19:49.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:19:49.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:19:49.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:19:49.358 -07 000000476 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:19:49.358 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 21:19:49.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 21:19:49.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:19:49.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:49.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:19:49.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:19:49.458 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:49.458 -07 000000382 INF: Autofocus start
17-03-17 21:19:49.458 -07 000000382 INF: MeasureProfile start
17-03-17 21:19:49.458 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:49.468 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:19:49.468 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:19:49.468 -07 000000382 INF: MeasureProfile done
17-03-17 21:19:49.468 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:19:49.468 -07 000000382 INF: Autofocus finished
17-03-17 21:19:49.668 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:19:49.668 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 21:19:49.668 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138523145008744. ----------
17-03-17 21:19:49.668 -07 000000610 INF: Cycle	49	Tile	8	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:19:49.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28768, sync = True, waitForSettling = True)
17-03-17 21:19:49.678 -07 000000610 INF: Z Motor: Moving to -0.131691 mm, started at -0.138523 mm, distance = 6.83 um
17-03-17 21:19:49.678 -07 000000610 INF: FPGA: Xmit ZDACW 28768\n [Z Motor]
17-03-17 21:19:49.678 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 21:19:49.688 -07 000000610 INF: FPGA: 'ZDACW 28768' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:19:49.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:49.688 -07 000000424 INF: FPGA: Recv ZDACR 28768
17-03-17 21:19:49.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:49.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:19:49.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:49.848 -07 000000429 INF: FPGA: Recv ZSGSRD 29795
17-03-17 21:19:49.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:49.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:49.858 -07 000000576 INF: FPGA: Recv ZSGSRD 29791
17-03-17 21:19:49.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:49.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:49.868 -07 000000012 INF: FPGA: Recv ZSGSRD 29790
17-03-17 21:19:49.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:49.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:49.878 -07 000000458 INF: FPGA: Recv ZSGSRD 29791
17-03-17 21:19:49.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:49.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:49.888 -07 000000480 INF: FPGA: Recv ZSGSRD 29789
17-03-17 21:19:49.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:49.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:49.898 -07 000000608 INF: FPGA: Recv ZSGSRD 29793
17-03-17 21:19:49.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:49.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:49.908 -07 000000438 INF: FPGA: Recv ZSGSRD 29788
17-03-17 21:19:49.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:49.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:49.918 -07 000000476 INF: FPGA: Recv ZSGSRD 29789
17-03-17 21:19:49.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:49.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:49.928 -07 000000431 INF: FPGA: Recv ZSGSRD 29784
17-03-17 21:19:49.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:49.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:49.938 -07 000000459 INF: FPGA: Recv ZSGSRD 29783
17-03-17 21:19:49.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:49.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:49.948 -07 000000569 INF: FPGA: Recv ZPIEZORD 25493
17-03-17 21:19:49.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:49.958 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.390 V. Piezo Error = -9.4 V.
17-03-17 21:19:49.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29789 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29790 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29783 (-130.9 uncal um), Max = 29795 (-130.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:19:49.958 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29789, posNoise = 6, negNoise = 6
17-03-17 21:19:49.958 -07 000000610 INF: Z Motor: After move to -0.131691, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:49.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:19:49.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:49.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:49.958 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:49.958 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:49.958 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:19:49.958 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:49.958 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:19:49.958 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:19:49.958 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:49.958 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:19:49.958 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:19:49.958 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:19:49.958 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:19:49.958 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:19:49.968 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:19:49.968 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:19:49.968 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:19:49.968 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:19:49.968 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:19:49.968 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:19:49.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28945 150\n [Camera]
17-03-17 21:19:50.178 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:19:50.608 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:19:50.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:19:50.608 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:50.608 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:19:50.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:19:50.608 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:50.618 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:50.618 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-17 21:19:50.618 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:50.618 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:19:50.798 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28945 814
17-03-17 21:19:50.948 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:19:50.988 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 21:19:50.988 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 21:19:50.988 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:50.988 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:50.998 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:19:50.998 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:19:50.998 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:50.998 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:19:50.998 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:50.998 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:19:51.158 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:19:51.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:19:51.158 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.02213,
17-03-17 21:19:51.158 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:51.158 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:51.158 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:19:51.158 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:19:51.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:19:51.158 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:51.158 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:51.158 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:19:51.348 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:19:51.348 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:19:51.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28945 150' command took 2 ms to send, 1362 ms to get response, and 1369 ms overall
17-03-17 21:19:51.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:19:51.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131694207502052. ------
17-03-17 21:19:51.468 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:51.468 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13804 mm
17-03-17 21:19:51.468 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:19:51.468 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 21:19:51.468 -07 000000424 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 21:19:51.468 -07 000000476 INF: Z Motor: Entering MoveAbsStepped (DAC = 30155, sync = True, waitForSettling = False)
17-03-17 21:19:51.468 -07 000000476 INF: Z Motor: Moving to -0.138041 mm, started at -0.131694 mm, distance = -6.35 um
17-03-17 21:19:51.468 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:51.478 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:19:51.478 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:51.478 -07 000000627 INF: FPGA: Recv YRDPOS 134583
17-03-17 21:19:51.488 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:19:51.488 -07 000000424 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:51.488 -07 000000424 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:19:51.488 -07 000000424 INF: Y Motor: Moving 1341 steps-17
17-03-17 21:19:51.488 -07 000000476 INF: FPGA: Xmit ZDACW 30155\n [Z Motor]
17-03-17 21:19:51.488 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:19:51.498 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:19:51.498 -07 000000476 INF: FPGA: 'ZDACW 30155' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:19:51.508 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:19:51.518 -07 000000476 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:51.518 -07 000000382 INF: FPGA: Recv ZDACR 30155
17-03-17 21:19:51.528 -07 000000476 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:19:51.528 -07 000000476 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 21:19:51.558 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:19:51.558 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:19:51.558 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:51.558 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:19:51.558 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:19:51.558 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:51.558 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:51.558 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 21:19:51.558 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:51.568 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 21:19:51.698 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:19:51.698 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 21:19:51.868 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:19:51.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:19:51.878 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:19:51.878 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 21:19:51.918 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:51.918 -07 000000459 INF: FPGA: Recv YRDPOS 136273
17-03-17 21:19:51.928 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:19:51.928 -07 000000424 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:51.928 -07 000000424 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 21:19:51.928 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 21:19:52.878 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:52.878 -07 000000415 INF: FPGA: Recv YRDPOS 136273
17-03-17 21:19:52.888 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:52.888 -07 000000424 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:52.908 -07 000000424 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:19:52.908 -07 000000424 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:19:52.908 -07 000000424 INF: Y Motor: Moved to 66.5396 after 1437 ms (table move)
17-03-17 21:19:52.908 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138041 mm (DAC = 30155)
17-03-17 21:19:52.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:52.918 -07 000000501 INF: FPGA: Recv ZSGSRD 30781
17-03-17 21:19:52.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:19:52.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:52.918 -07 000000627 INF: FPGA: Recv ZSGSRD 30776
17-03-17 21:19:52.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:52.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:52.928 -07 000000382 INF: FPGA: Recv ZSGSRD 30776
17-03-17 21:19:52.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:52.938 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:52.938 -07 000000429 INF: FPGA: Recv ZSGSRD 30782
17-03-17 21:19:52.948 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:52.948 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:52.948 -07 000000459 INF: FPGA: Recv ZSGSRD 30783
17-03-17 21:19:52.958 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:52.958 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:52.958 -07 000000501 INF: FPGA: Recv ZSGSRD 30781
17-03-17 21:19:52.968 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:52.968 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:52.968 -07 000000547 INF: FPGA: Recv ZSGSRD 30781
17-03-17 21:19:52.978 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:52.978 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:52.978 -07 000000415 INF: FPGA: Recv ZSGSRD 30773
17-03-17 21:19:52.988 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:52.988 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:52.988 -07 000000576 INF: FPGA: Recv ZSGSRD 30769
17-03-17 21:19:52.998 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:52.998 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:52.998 -07 000000512 INF: FPGA: Recv ZSGSRD 30779
17-03-17 21:19:53.008 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:53.008 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:53.008 -07 000000458 INF: FPGA: Recv ZPIEZORD 26826
17-03-17 21:19:53.018 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:53.018 -07 000000431 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.601 V. Piezo Error = -8.7 V.
17-03-17 21:19:53.018 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30778 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30780 (-137.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30769 (-137.2 uncal um), Max = 30783 (-137.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 21:19:53.018 -07 000000431 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30778, posNoise = 5, negNoise = 9
17-03-17 21:19:53.018 -07 000000431 INF: Z Motor: After move to -0.138041, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:53.018 -07 000000431 INF: Z Motor: Settle wait time = 1440 ms, measure time = 103 ms (allowed 150 ms), total time = 1543 ms
17-03-17 21:19:53.018 -07 000000431 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:19:53.068 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 21:19:53.068 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:19:53.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:53.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:53.068 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:53.068 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:19:53.068 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:53.068 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:53.068 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:53.068 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:19:53.078 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:19:53.078 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:19:53.088 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 21:19:53.088 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 21:19:53.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:19:53.128 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 21:19:53.328 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:19:53.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:19:53.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:19:53.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:19:53.368 -07 000000501 INF: FPGA: Recv @CAMSNAP 281
17-03-17 21:19:53.368 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 21:19:53.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:19:53.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 21:19:53.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:53.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:19:53.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 21:19:53.468 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:53.468 -07 000000431 INF: Autofocus start
17-03-17 21:19:53.468 -07 000000431 INF: MeasureProfile start
17-03-17 21:19:53.468 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:53.478 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:19:53.478 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:19:53.478 -07 000000431 INF: MeasureProfile done
17-03-17 21:19:53.478 -07 000000431 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:19:53.478 -07 000000431 INF: Autofocus finished
17-03-17 21:19:53.678 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:19:53.678 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:19:53.678 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.138047753310254. ----------
17-03-17 21:19:53.678 -07 000000610 INF: Cycle	49	Tile	9	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:19:53.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28679, sync = True, waitForSettling = True)
17-03-17 21:19:53.688 -07 000000610 INF: Z Motor: Moving to -0.131284 mm, started at -0.138048 mm, distance = 6.76 um
17-03-17 21:19:53.688 -07 000000610 INF: FPGA: Xmit ZDACW 28679\n [Z Motor]
17-03-17 21:19:53.688 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:19:53.698 -07 000000610 INF: FPGA: 'ZDACW 28679' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:53.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:53.698 -07 000000012 INF: FPGA: Recv ZDACR 28679
17-03-17 21:19:53.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:53.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:19:53.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:53.858 -07 000000424 INF: FPGA: Recv ZSGSRD 29727
17-03-17 21:19:53.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:53.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:53.868 -07 000000429 INF: FPGA: Recv ZSGSRD 29725
17-03-17 21:19:53.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:53.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:53.878 -07 000000415 INF: FPGA: Recv ZSGSRD 29726
17-03-17 21:19:53.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:53.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:53.888 -07 000000512 INF: FPGA: Recv ZSGSRD 29726
17-03-17 21:19:53.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:53.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:53.898 -07 000000459 INF: FPGA: Recv ZSGSRD 29731
17-03-17 21:19:53.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:53.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:53.908 -07 000000576 INF: FPGA: Recv ZSGSRD 29729
17-03-17 21:19:53.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:53.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:53.918 -07 000000458 INF: FPGA: Recv ZSGSRD 29726
17-03-17 21:19:53.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:53.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:53.928 -07 000000415 INF: FPGA: Recv ZSGSRD 29723
17-03-17 21:19:53.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:53.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:53.938 -07 000000512 INF: FPGA: Recv ZSGSRD 29726
17-03-17 21:19:53.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:53.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:53.948 -07 000000608 INF: FPGA: Recv ZSGSRD 29728
17-03-17 21:19:53.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:53.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:53.958 -07 000000012 INF: FPGA: Recv ZPIEZORD 25457
17-03-17 21:19:53.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:53.968 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.376 V. Piezo Error = -9.4 V.
17-03-17 21:19:53.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29727 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29726 (-130.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29723 (-130.5 uncal um), Max = 29731 (-130.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:19:53.968 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29727, posNoise = 4, negNoise = 4
17-03-17 21:19:53.968 -07 000000610 INF: Z Motor: After move to -0.131284, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:53.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:19:53.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:53.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:53.968 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:53.968 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:53.968 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:19:53.968 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:19:53.968 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:19:53.968 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:53.968 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:19:53.968 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:19:53.968 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:53.968 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:19:53.968 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:19:53.978 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:19:53.978 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-17 21:19:53.978 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:19:53.988 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:19:53.988 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:19:53.988 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:19:53.988 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:19:53.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28856 150\n [Camera]
17-03-17 21:19:54.188 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:19:54.618 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:19:54.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:19:54.618 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:54.618 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:19:54.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:19:54.618 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:54.628 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:54.628 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:19:54.628 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:54.628 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:19:54.808 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28856 814
17-03-17 21:19:54.958 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:19:54.998 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 21:19:54.998 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 21:19:54.998 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:54.998 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:19:54.998 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:19:54.998 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:55.008 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:55.008 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:19:55.008 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:19:55.018 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:19:55.168 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:19:55.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:19:55.168 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:55.168 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:19:55.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:19:55.168 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:55.168 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:55.168 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:19:55.178 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:55.178 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:19:55.358 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:19:55.358 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:19:55.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28856 150' command took 2 ms to send, 1363 ms to get response, and 1370 ms overall
17-03-17 21:19:55.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:19:55.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.131295906349263. ------
17-03-17 21:19:55.368 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:55.368 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13803 mm
17-03-17 21:19:55.368 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:19:55.368 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:55.368 -07 000000608 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 21:19:55.368 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 30152, sync = True, waitForSettling = False)
17-03-17 21:19:55.368 -07 000000424 INF: Z Motor: Moving to -0.138027 mm, started at -0.131296 mm, distance = -6.73 um
17-03-17 21:19:55.368 -07 000000608 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 21:19:55.378 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:55.378 -07 000000424 INF: FPGA: Xmit ZDACW 30152\n [Z Motor]
17-03-17 21:19:55.378 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:19:55.388 -07 000000424 INF: FPGA: 'ZDACW 30152' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 21:19:55.388 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:55.388 -07 000000475 INF: FPGA: Recv YRDPOS 136273
17-03-17 21:19:55.398 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:19:55.398 -07 000000608 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:55.398 -07 000000608 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:19:55.398 -07 000000608 INF: Y Motor: Moving 1349 steps-27
17-03-17 21:19:55.398 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:19:55.408 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:55.408 -07 000000576 INF: FPGA: Recv ZDACR 30152
17-03-17 21:19:55.418 -07 000000608 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:19:55.418 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:19:55.418 -07 000000424 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 21:19:55.548 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 21:19:55.548 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 21:19:55.548 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:55.558 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:19:55.558 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:19:55.558 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:19:55.558 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:55.558 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:19:55.558 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 21:19:55.568 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:19:55.598 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:19:55.598 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 21:19:55.788 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 21:19:55.788 -07 000000608 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:19:55.828 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:55.828 -07 000000012 INF: FPGA: Recv YRDPOS 137978
17-03-17 21:19:55.838 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:19:55.838 -07 000000608 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:55.838 -07 000000608 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 21:19:55.838 -07 000000608 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.118 mm/sec
17-03-17 21:19:56.518 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.018051,
17-03-17 21:19:56.788 -07 000000608 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:56.788 -07 000000424 INF: FPGA: Recv YRDPOS 137979
17-03-17 21:19:56.798 -07 000000608 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:56.798 -07 000000608 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:56.818 -07 000000608 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:19:56.818 -07 000000608 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:19:56.818 -07 000000608 INF: Y Motor: Moved to 67.3726 after 1450 ms (table move)
17-03-17 21:19:56.818 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138027 mm (DAC = 30152)
17-03-17 21:19:56.818 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:56.828 -07 000000429 INF: FPGA: Recv ZSGSRD 30783
17-03-17 21:19:56.828 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:19:56.828 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:56.828 -07 000000576 INF: FPGA: Recv ZSGSRD 30776
17-03-17 21:19:56.838 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:56.838 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:56.838 -07 000000512 INF: FPGA: Recv ZSGSRD 30768
17-03-17 21:19:56.848 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:56.848 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:56.848 -07 000000459 INF: FPGA: Recv ZSGSRD 30776
17-03-17 21:19:56.858 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:56.858 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:56.858 -07 000000627 INF: FPGA: Recv ZSGSRD 30783
17-03-17 21:19:56.868 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:56.868 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:56.868 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:19:56.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:19:56.868 -07 000000626 INF: FPGA: Recv ZSGSRD 30777
17-03-17 21:19:56.878 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:56.878 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:56.878 -07 000000569 INF: FPGA: Recv ZSGSRD 30774
17-03-17 21:19:56.888 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:56.888 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:56.888 -07 000000475 INF: FPGA: Recv ZSGSRD 30769
17-03-17 21:19:56.898 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:56.898 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:56.898 -07 000000476 INF: FPGA: Recv ZSGSRD 30775
17-03-17 21:19:56.908 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:56.908 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:56.908 -07 000000438 INF: FPGA: Recv ZSGSRD 30776
17-03-17 21:19:56.918 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:56.918 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:56.918 -07 000000459 INF: FPGA: Recv ZPIEZORD 26831
17-03-17 21:19:56.928 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:56.928 -07 000000480 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.601 V. Piezo Error = -8.7 V.
17-03-17 21:19:56.928 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30776 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30776 (-137.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30768 (-137.2 uncal um), Max = 30783 (-137.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:19:56.928 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30776, posNoise = 7, negNoise = 8
17-03-17 21:19:56.928 -07 000000480 INF: Z Motor: After move to -0.138027, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:56.928 -07 000000480 INF: Z Motor: Settle wait time = 1453 ms, measure time = 103 ms (allowed 150 ms), total time = 1556 ms
17-03-17 21:19:56.928 -07 000000480 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:19:56.978 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 21:19:56.978 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:19:56.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:56.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:56.988 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:56.988 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:56.988 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:19:56.988 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:56.988 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:56.988 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:19:56.988 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:19:56.988 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:19:56.998 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:19:56.998 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 21:19:57.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:19:57.048 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:19:57.248 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:19:57.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:19:57.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:19:57.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 21:19:57.288 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:19:57.288 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 21:19:57.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 286 ms overall
17-03-17 21:19:57.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:19:57.368 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:57.368 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:19:57.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:19:57.388 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:57.388 -07 000000626 INF: Autofocus start
17-03-17 21:19:57.388 -07 000000626 INF: MeasureProfile start
17-03-17 21:19:57.388 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:57.398 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:19:57.398 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:19:57.398 -07 000000626 INF: MeasureProfile done
17-03-17 21:19:57.398 -07 000000626 INF: X=3  Z correction [um]=-0.009517147
17-03-17 21:19:57.398 -07 000000626 INF: Autofocus finished
17-03-17 21:19:57.598 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:19:57.598 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 21:19:57.598 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.13803490488597. ----------
17-03-17 21:19:57.608 -07 000000610 INF: Cycle	49	Tile	10	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:19:57.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28662, sync = True, waitForSettling = True)
17-03-17 21:19:57.608 -07 000000610 INF: Z Motor: Moving to -0.131206 mm, started at -0.138035 mm, distance = 6.83 um
17-03-17 21:19:57.608 -07 000000610 INF: FPGA: Xmit ZDACW 28662\n [Z Motor]
17-03-17 21:19:57.608 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:19:57.618 -07 000000610 INF: FPGA: 'ZDACW 28662' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:19:57.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:57.618 -07 000000512 INF: FPGA: Recv ZDACR 28662
17-03-17 21:19:57.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:57.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:19:57.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:57.778 -07 000000431 INF: FPGA: Recv ZSGSRD 29715
17-03-17 21:19:57.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:19:57.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:57.788 -07 000000627 INF: FPGA: Recv ZSGSRD 29717
17-03-17 21:19:57.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:57.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:57.798 -07 000000480 INF: FPGA: Recv ZSGSRD 29715
17-03-17 21:19:57.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:57.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:57.808 -07 000000626 INF: FPGA: Recv ZSGSRD 29710
17-03-17 21:19:57.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:57.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:57.818 -07 000000415 INF: FPGA: Recv ZSGSRD 29716
17-03-17 21:19:57.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:57.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:57.828 -07 000000626 INF: FPGA: Recv ZSGSRD 29716
17-03-17 21:19:57.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:57.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:57.838 -07 000000501 INF: FPGA: Recv ZSGSRD 29712
17-03-17 21:19:57.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:57.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:57.848 -07 000000576 INF: FPGA: Recv ZSGSRD 29711
17-03-17 21:19:57.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:57.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:57.858 -07 000000627 INF: FPGA: Recv ZSGSRD 29716
17-03-17 21:19:57.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:57.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:19:57.868 -07 000000431 INF: FPGA: Recv ZSGSRD 29715
17-03-17 21:19:57.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:57.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:19:57.878 -07 000000458 INF: FPGA: Recv ZPIEZORD 25476
17-03-17 21:19:57.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:19:57.888 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.374 V. Piezo Error = -9.3 V.
17-03-17 21:19:57.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29714 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29715 (-130.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29710 (-130.4 uncal um), Max = 29717 (-130.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:19:57.888 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29714, posNoise = 3, negNoise = 4
17-03-17 21:19:57.888 -07 000000610 INF: Z Motor: After move to -0.131206, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:19:57.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:19:57.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:19:57.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:19:57.888 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:19:57.888 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:19:57.888 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:19:57.888 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:19:57.888 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:19:57.888 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:19:57.888 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:19:57.888 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:19:57.888 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:19:57.888 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:19:57.888 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:19:57.888 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:19:57.888 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:19:57.898 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:19:57.898 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:19:57.898 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:19:57.898 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:19:57.898 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:19:57.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28839 150\n [Camera]
17-03-17 21:19:58.108 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:19:58.538 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:19:58.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:19:58.538 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:58.538 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:58.538 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:19:58.538 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:19:58.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:19:58.538 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:58.538 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:58.538 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:19:58.728 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28839 814
17-03-17 21:19:58.878 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:19:58.918 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:19:58.918 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 21:19:58.918 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:58.918 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 21:19:58.918 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:19:58.918 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:58.928 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:58.928 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:19:58.928 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:19:58.928 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:19:59.088 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:19:59.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:19:59.088 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:19:59.088 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:19:59.088 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:19:59.088 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:19:59.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:19:59.088 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:19:59.088 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:19:59.208 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:19:59.278 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:19:59.278 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:19:59.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28839 150' command took 2 ms to send, 1362 ms to get response, and 1370 ms overall
17-03-17 21:19:59.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:19:59.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.13121239159142. ------
17-03-17 21:19:59.278 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:19:59.278 -07 000000476 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13763 mm
17-03-17 21:19:59.278 -07 000000476 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:19:59.288 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:19:59.288 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 21:19:59.288 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30065, sync = True, waitForSettling = False)
17-03-17 21:19:59.288 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 21:19:59.288 -07 000000569 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 21:19:59.288 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:19:59.288 -07 000000459 INF: Z Motor: Moving to -0.137629 mm, started at -0.131212 mm, distance = -6.42 um
17-03-17 21:19:59.298 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:59.298 -07 000000382 INF: FPGA: Recv YRDPOS 137979
17-03-17 21:19:59.308 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 21:19:59.308 -07 000000569 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:59.308 -07 000000569 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:19:59.308 -07 000000569 INF: Y Motor: Moving 1344 steps-22
17-03-17 21:19:59.308 -07 000000459 INF: FPGA: Xmit ZDACW 30065\n [Z Motor]
17-03-17 21:19:59.308 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:19:59.318 -07 000000459 INF: FPGA: 'ZDACW 30065' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 21:19:59.318 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:19:59.328 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:19:59.328 -07 000000475 INF: FPGA: Recv ZDACR 30065
17-03-17 21:19:59.338 -07 000000459 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:19:59.338 -07 000000459 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 21:19:59.478 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 21:19:59.478 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 21:19:59.488 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:59.488 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:19:59.488 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 21:19:59.488 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:19:59.488 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:19:59.608 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 21:19:59.608 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-17 21:19:59.608 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:19:59.608 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:19:59.618 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-17 21:19:59.688 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 21:19:59.688 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:19:59.728 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:19:59.728 -07 000000475 INF: FPGA: Recv YRDPOS 139684
17-03-17 21:19:59.738 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:19:59.738 -07 000000569 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:19:59.738 -07 000000569 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 21:19:59.738 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.840 mm, average velocity = 2.165 mm/sec
17-03-17 21:20:00.688 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:00.688 -07 000000415 INF: FPGA: Recv YRDPOS 139684
17-03-17 21:20:00.698 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:00.698 -07 000000569 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:00.718 -07 000000569 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:20:00.718 -07 000000569 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:20:00.718 -07 000000569 INF: Y Motor: Moved to 68.2051 after 1430 ms (table move)
17-03-17 21:20:00.718 -07 000000476 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137629 mm (DAC = 30065)
17-03-17 21:20:00.718 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:00.718 -07 000000438 INF: FPGA: Recv ZSGSRD 30715
17-03-17 21:20:00.728 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:20:00.728 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:00.728 -07 000000458 INF: FPGA: Recv ZSGSRD 30722
17-03-17 21:20:00.738 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:00.738 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:00.738 -07 000000608 INF: FPGA: Recv ZSGSRD 30713
17-03-17 21:20:00.748 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:00.748 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:00.748 -07 000000501 INF: FPGA: Recv ZSGSRD 30721
17-03-17 21:20:00.758 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:00.758 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:00.758 -07 000000012 INF: FPGA: Recv ZSGSRD 30709
17-03-17 21:20:00.768 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:00.768 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:00.768 -07 000000424 INF: FPGA: Recv ZSGSRD 30712
17-03-17 21:20:00.778 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:00.778 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:00.778 -07 000000458 INF: FPGA: Recv ZSGSRD 30716
17-03-17 21:20:00.788 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:00.788 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:00.788 -07 000000626 INF: FPGA: Recv ZSGSRD 30707
17-03-17 21:20:00.798 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:00.798 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:00.798 -07 000000501 INF: FPGA: Recv ZSGSRD 30715
17-03-17 21:20:00.808 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:00.808 -07 000000476 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:00.808 -07 000000459 INF: FPGA: Recv ZSGSRD 30722
17-03-17 21:20:00.818 -07 000000476 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:00.818 -07 000000476 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:20:00.818 -07 000000415 INF: FPGA: Recv ZPIEZORD 26774
17-03-17 21:20:00.828 -07 000000476 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:00.828 -07 000000476 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.588 V. Piezo Error = -8.7 V.
17-03-17 21:20:00.828 -07 000000476 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30715 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30715 (-136.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30707 (-136.8 uncal um), Max = 30722 (-136.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:20:00.828 -07 000000476 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30715, posNoise = 7, negNoise = 8
17-03-17 21:20:00.828 -07 000000476 INF: Z Motor: After move to -0.137629, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:20:00.828 -07 000000476 INF: Z Motor: Settle wait time = 1432 ms, measure time = 104 ms (allowed 150 ms), total time = 1536 ms
17-03-17 21:20:00.828 -07 000000476 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 21:20:00.878 -07 000000476 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 21:20:00.878 -07 000000476 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:20:00.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:20:00.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:20:00.878 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:20:00.878 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:20:00.878 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:20:00.878 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:20:00.878 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:20:00.878 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:20:00.888 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:20:00.888 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:20:00.888 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:20:00.888 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 21:20:00.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:20:00.938 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:20:01.138 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:20:01.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:20:01.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:20:01.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:20:01.178 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:20:01.178 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 21:20:01.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 286 ms overall
17-03-17 21:20:01.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:20:01.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:01.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:20:01.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 21:20:01.278 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:20:01.278 -07 000000547 INF: Autofocus start
17-03-17 21:20:01.278 -07 000000547 INF: MeasureProfile start
17-03-17 21:20:01.278 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:20:01.288 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:20:01.288 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:20:01.298 -07 000000547 INF: MeasureProfile done
17-03-17 21:20:01.298 -07 000000547 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:20:01.298 -07 000000547 INF: Autofocus finished
17-03-17 21:20:01.488 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:20:01.488 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:20:01.488 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.137643027945323. ----------
17-03-17 21:20:01.488 -07 000000610 INF: Cycle	49	Tile	11	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:20:01.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28589, sync = True, waitForSettling = True)
17-03-17 21:20:01.498 -07 000000610 INF: Z Motor: Moving to -0.130872 mm, started at -0.137643 mm, distance = 6.77 um
17-03-17 21:20:01.498 -07 000000610 INF: FPGA: Xmit ZDACW 28589\n [Z Motor]
17-03-17 21:20:01.498 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 21:20:01.508 -07 000000610 INF: FPGA: 'ZDACW 28589' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:20:01.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:20:01.508 -07 000000415 INF: FPGA: Recv ZDACR 28589
17-03-17 21:20:01.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:01.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:20:01.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:01.668 -07 000000476 INF: FPGA: Recv ZSGSRD 29660
17-03-17 21:20:01.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:01.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:01.678 -07 000000512 INF: FPGA: Recv ZSGSRD 29665
17-03-17 21:20:01.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:01.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:01.688 -07 000000626 INF: FPGA: Recv ZSGSRD 29661
17-03-17 21:20:01.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:01.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:01.698 -07 000000458 INF: FPGA: Recv ZSGSRD 29658
17-03-17 21:20:01.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:01.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:01.708 -07 000000501 INF: FPGA: Recv ZSGSRD 29667
17-03-17 21:20:01.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:01.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:01.718 -07 000000458 INF: FPGA: Recv ZSGSRD 29663
17-03-17 21:20:01.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:01.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:01.728 -07 000000438 INF: FPGA: Recv ZSGSRD 29662
17-03-17 21:20:01.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:01.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:01.738 -07 000000480 INF: FPGA: Recv ZSGSRD 29663
17-03-17 21:20:01.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:01.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:01.748 -07 000000512 INF: FPGA: Recv ZSGSRD 29661
17-03-17 21:20:01.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:01.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:01.758 -07 000000626 INF: FPGA: Recv ZSGSRD 29671
17-03-17 21:20:01.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:01.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:20:01.768 -07 000000627 INF: FPGA: Recv ZPIEZORD 25396
17-03-17 21:20:01.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:01.778 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.362 V. Piezo Error = -9.4 V.
17-03-17 21:20:01.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29663 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29662 (-130.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29658 (-130.1 uncal um), Max = 29671 (-130.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:20:01.778 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29663, posNoise = 8, negNoise = 5
17-03-17 21:20:01.778 -07 000000610 INF: Z Motor: After move to -0.130872, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:20:01.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:20:01.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:20:01.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:20:01.778 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:20:01.778 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:20:01.778 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:20:01.778 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:20:01.778 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:20:01.778 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:20:01.778 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:20:01.778 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:20:01.778 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:20:01.778 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:20:01.788 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:20:01.788 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:20:01.788 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:20:01.788 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:20:01.788 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:20:01.788 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:20:01.788 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:20:01.788 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:20:01.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28766 150\n [Camera]
17-03-17 21:20:01.868 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:20:01.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:20:01.878 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.988112,
17-03-17 21:20:01.998 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:20:02.428 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:20:02.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:20:02.428 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:20:02.428 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:20:02.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:20:02.428 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:20:02.438 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:20:02.438 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-17 21:20:02.438 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:20:02.438 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:20:02.618 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28766 814
17-03-17 21:20:02.768 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:20:02.808 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:20:02.818 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:20:02.818 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:02.818 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:20:02.818 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:20:02.818 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 21:20:02.818 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:02.818 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:20:02.818 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:20:02.828 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 21:20:02.978 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1171
17-03-17 21:20:02.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1171
17-03-17 21:20:02.978 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:20:02.978 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:20:02.978 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 21:20:02.978 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1172
17-03-17 21:20:02.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1172
17-03-17 21:20:02.978 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:20:02.978 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:20:02.978 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:20:03.168 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:20:03.168 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:20:03.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28766 150' command took 4 ms to send, 1363 ms to get response, and 1371 ms overall
17-03-17 21:20:03.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:20:03.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.13088475677219. ------
17-03-17 21:20:03.288 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13757 mm
17-03-17 21:20:03.288 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:20:03.288 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:20:03.288 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 21:20:03.288 -07 000000475 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 21:20:03.288 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30052, sync = True, waitForSettling = False)
17-03-17 21:20:03.288 -07 000000608 INF: Z Motor: Moving to -0.137569 mm, started at -0.130885 mm, distance = -6.68 um
17-03-17 21:20:03.288 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:20:03.298 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:03.298 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:20:03.298 -07 000000569 INF: FPGA: Recv YRDPOS 139684
17-03-17 21:20:03.308 -07 000000608 INF: FPGA: Xmit ZDACW 30052\n [Z Motor]
17-03-17 21:20:03.308 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:20:03.308 -07 000000475 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:03.308 -07 000000475 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:20:03.308 -07 000000475 INF: Y Motor: Moving 1340 steps-15
17-03-17 21:20:03.308 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 21:20:03.318 -07 000000608 INF: FPGA: 'ZDACW 30052' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:20:03.318 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:20:03.328 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:20:03.338 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:20:03.338 -07 000000431 INF: FPGA: Recv ZDACR 30052
17-03-17 21:20:03.348 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:20:03.348 -07 000000608 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 21:20:03.368 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 21:20:03.368 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 21:20:03.368 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:03.368 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:20:03.378 -07 000000476 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:20:03.378 -07 000000476 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 21:20:03.378 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:03.378 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:20:03.378 -07 000000476 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:20:03.378 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 21:20:03.518 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:20:03.518 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:20:03.698 -07 000000512 INF: FPGA: Recv YMVTILE
17-03-17 21:20:03.698 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 21:20:03.738 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:03.738 -07 000000382 INF: FPGA: Recv YRDPOS 141368
17-03-17 21:20:03.748 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:20:03.748 -07 000000475 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:03.748 -07 000000475 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 21:20:03.748 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 21:20:04.698 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:04.698 -07 000000459 INF: FPGA: Recv YRDPOS 141369
17-03-17 21:20:04.708 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:04.708 -07 000000475 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:04.728 -07 000000475 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:20:04.728 -07 000000475 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:20:04.728 -07 000000475 INF: Y Motor: Moved to 69.0278 after 1438 ms (table move)
17-03-17 21:20:04.728 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137569 mm (DAC = 30052)
17-03-17 21:20:04.728 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:04.738 -07 000000012 INF: FPGA: Recv ZSGSRD 30711
17-03-17 21:20:04.738 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:20:04.738 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:04.738 -07 000000424 INF: FPGA: Recv ZSGSRD 30702
17-03-17 21:20:04.748 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:20:04.748 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:04.748 -07 000000512 INF: FPGA: Recv ZSGSRD 30704
17-03-17 21:20:04.758 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:04.758 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:04.758 -07 000000458 INF: FPGA: Recv ZSGSRD 30706
17-03-17 21:20:04.768 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:04.768 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:04.768 -07 000000608 INF: FPGA: Recv ZSGSRD 30708
17-03-17 21:20:04.778 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:04.778 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:04.778 -07 000000438 INF: FPGA: Recv ZSGSRD 30709
17-03-17 21:20:04.788 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:04.788 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:04.788 -07 000000382 INF: FPGA: Recv ZSGSRD 30708
17-03-17 21:20:04.798 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:04.798 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:04.798 -07 000000512 INF: FPGA: Recv ZSGSRD 30701
17-03-17 21:20:04.808 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:04.808 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:04.808 -07 000000458 INF: FPGA: Recv ZSGSRD 30699
17-03-17 21:20:04.818 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:04.818 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:04.818 -07 000000459 INF: FPGA: Recv ZSGSRD 30708
17-03-17 21:20:04.828 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:04.828 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:20:04.828 -07 000000547 INF: FPGA: Recv ZPIEZORD 26769
17-03-17 21:20:04.838 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:04.838 -07 000000576 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.586 V. Piezo Error = -8.7 V.
17-03-17 21:20:04.838 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30706 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30707 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30699 (-136.7 uncal um), Max = 30711 (-136.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:20:04.838 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30706, posNoise = 5, negNoise = 7
17-03-17 21:20:04.838 -07 000000576 INF: Z Motor: After move to -0.137569, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:20:04.838 -07 000000576 INF: Z Motor: Settle wait time = 1441 ms, measure time = 103 ms (allowed 150 ms), total time = 1544 ms
17-03-17 21:20:04.838 -07 000000576 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:20:04.888 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 21:20:04.888 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:20:04.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:20:04.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:20:04.888 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:20:04.888 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:20:04.888 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:20:04.888 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:20:04.898 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:20:04.898 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:20:04.898 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:20:04.898 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:20:04.908 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:20:04.908 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:20:04.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:20:04.958 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:20:05.158 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:20:05.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:20:05.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:20:05.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:20:05.198 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:20:05.198 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 21:20:05.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 21:20:05.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:20:05.278 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:05.278 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:20:05.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:20:05.298 -07 000000458 INF: Autofocus start
17-03-17 21:20:05.298 -07 000000458 INF: MeasureProfile start
17-03-17 21:20:05.308 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:20:05.308 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:20:05.318 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:05.318 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:20:05.328 -07 000000458 INF: MeasureProfile done
17-03-17 21:20:05.328 -07 000000458 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:20:05.328 -07 000000458 INF: Autofocus finished
17-03-17 21:20:05.518 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:20:05.518 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 21:20:05.518 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.137585210036047. ----------
17-03-17 21:20:05.518 -07 000000610 INF: Cycle	49	Tile	12	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:20:05.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28559, sync = True, waitForSettling = True)
17-03-17 21:20:05.528 -07 000000610 INF: Z Motor: Moving to -0.130735 mm, started at -0.137585 mm, distance = 6.85 um
17-03-17 21:20:05.528 -07 000000610 INF: FPGA: Xmit ZDACW 28559\n [Z Motor]
17-03-17 21:20:05.528 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:20:05.538 -07 000000610 INF: FPGA: 'ZDACW 28559' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:20:05.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:20:05.538 -07 000000438 INF: FPGA: Recv ZDACR 28559
17-03-17 21:20:05.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:05.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:20:05.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:05.698 -07 000000480 INF: FPGA: Recv ZSGSRD 29643
17-03-17 21:20:05.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:05.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:05.708 -07 000000431 INF: FPGA: Recv ZSGSRD 29641
17-03-17 21:20:05.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:05.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:05.718 -07 000000438 INF: FPGA: Recv ZSGSRD 29632
17-03-17 21:20:05.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:05.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:05.728 -07 000000459 INF: FPGA: Recv ZSGSRD 29637
17-03-17 21:20:05.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:05.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:05.738 -07 000000382 INF: FPGA: Recv ZSGSRD 29647
17-03-17 21:20:05.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:05.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:05.748 -07 000000501 INF: FPGA: Recv ZSGSRD 29645
17-03-17 21:20:05.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:05.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:05.758 -07 000000475 INF: FPGA: Recv ZSGSRD 29640
17-03-17 21:20:05.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:05.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:05.768 -07 000000431 INF: FPGA: Recv ZSGSRD 29637
17-03-17 21:20:05.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:05.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:05.778 -07 000000438 INF: FPGA: Recv ZSGSRD 29641
17-03-17 21:20:05.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:05.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:05.788 -07 000000458 INF: FPGA: Recv ZSGSRD 29642
17-03-17 21:20:05.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:05.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:20:05.798 -07 000000569 INF: FPGA: Recv ZPIEZORD 25395
17-03-17 21:20:05.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:05.808 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -9.3 V.
17-03-17 21:20:05.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29640 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29641 (-130.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29632 (-129.9 uncal um), Max = 29647 (-130.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:20:05.808 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29640, posNoise = 7, negNoise = 8
17-03-17 21:20:05.808 -07 000000610 INF: Z Motor: After move to -0.130735, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:20:05.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 21:20:05.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:20:05.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:20:05.808 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:20:05.808 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:20:05.808 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:20:05.808 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:20:05.808 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:20:05.808 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:20:05.808 -07 000000458 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:20:05.808 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:20:05.808 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:20:05.808 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:20:05.808 -07 000000458 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:20:05.808 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:20:05.818 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:20:05.818 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:20:05.818 -07 000000458 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:20:05.818 -07 000000458 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 21:20:05.828 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:20:05.828 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:20:05.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28736 150\n [Camera]
17-03-17 21:20:06.028 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:20:06.458 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:20:06.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:20:06.458 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:20:06.458 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:20:06.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:20:06.458 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:20:06.468 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:20:06.468 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:20:06.468 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:20:06.468 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:20:06.648 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28736 814
17-03-17 21:20:06.798 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:20:06.838 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 21:20:06.838 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 21:20:06.838 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:06.838 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:20:06.838 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:20:06.838 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 21:20:06.838 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 21:20:06.838 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:06.848 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:20:06.848 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 21:20:06.868 -07 000000012 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:20:06.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:20:07.008 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:20:07.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:20:07.008 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:20:07.008 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:20:07.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:20:07.008 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:20:07.008 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:20:07.008 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:20:07.018 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:20:07.018 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 21:20:07.198 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:20:07.198 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:20:07.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28736 150' command took 2 ms to send, 1365 ms to get response, and 1370 ms overall
17-03-17 21:20:07.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:20:07.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.13073699989293. ------
17-03-17 21:20:07.208 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:20:07.208 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13720 mm
17-03-17 21:20:07.208 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:20:07.208 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 21:20:07.208 -07 000000415 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 21:20:07.208 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29971, sync = True, waitForSettling = False)
17-03-17 21:20:07.208 -07 000000424 INF: Z Motor: Moving to -0.137198 mm, started at -0.130737 mm, distance = -6.46 um
17-03-17 21:20:07.208 -07 000000458 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:20:07.218 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:20:07.218 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:07.218 -07 000000475 INF: FPGA: Recv YRDPOS 141369
17-03-17 21:20:07.228 -07 000000424 INF: FPGA: Xmit ZDACW 29971\n [Z Motor]
17-03-17 21:20:07.228 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 21:20:07.228 -07 000000415 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:07.228 -07 000000415 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:20:07.228 -07 000000415 INF: Y Motor: Moving 1352 steps-31
17-03-17 21:20:07.228 -07 000000012 INF: FPGA: Recv ZDACW
17-03-17 21:20:07.238 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:20:07.238 -07 000000424 INF: FPGA: 'ZDACW 29971' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:20:07.258 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:20:07.258 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 3.98264,
17-03-17 21:20:07.268 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:20:07.268 -07 000000475 INF: FPGA: Recv ZDACR 29971
17-03-17 21:20:07.278 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 21:20:07.278 -07 000000424 INF: Z Motor: MoveAbsStepped took 65 ms (did NOT wait for settling yet))
17-03-17 21:20:07.398 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 21:20:07.398 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:20:07.398 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:07.398 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:20:07.408 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 21:20:07.408 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 21:20:07.408 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:20:07.408 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:07.408 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:20:07.408 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:20:07.438 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:20:07.438 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 21:20:07.638 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 21:20:07.638 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 409 ms overall
17-03-17 21:20:07.668 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:07.678 -07 000000431 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:20:07.678 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 21:20:07.678 -07 000000415 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:07.678 -07 000000415 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 21:20:07.678 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 409 ms, distance = 0.845 mm, average velocity = 2.065 mm/sec
17-03-17 21:20:08.628 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:08.628 -07 000000626 INF: FPGA: Recv YRDPOS 143080
17-03-17 21:20:08.638 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:08.638 -07 000000415 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:08.658 -07 000000415 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:20:08.658 -07 000000415 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:20:08.658 -07 000000415 INF: Y Motor: Moved to 69.8633 after 1449 ms (table move)
17-03-17 21:20:08.658 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137198 mm (DAC = 29971)
17-03-17 21:20:08.658 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:08.668 -07 000000512 INF: FPGA: Recv ZSGSRD 30647
17-03-17 21:20:08.668 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:20:08.668 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:08.668 -07 000000476 INF: FPGA: Recv ZSGSRD 30648
17-03-17 21:20:08.678 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:08.678 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:08.678 -07 000000438 INF: FPGA: Recv ZSGSRD 30647
17-03-17 21:20:08.688 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:08.688 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:08.688 -07 000000475 INF: FPGA: Recv ZSGSRD 30662
17-03-17 21:20:08.698 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:08.698 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:08.698 -07 000000576 INF: FPGA: Recv ZSGSRD 30651
17-03-17 21:20:08.708 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:08.708 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:08.708 -07 000000012 INF: FPGA: Recv ZSGSRD 30642
17-03-17 21:20:08.718 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:08.718 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:08.718 -07 000000547 INF: FPGA: Recv ZSGSRD 30648
17-03-17 21:20:08.728 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:08.728 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:08.728 -07 000000415 INF: FPGA: Recv ZSGSRD 30640
17-03-17 21:20:08.738 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:08.738 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:08.738 -07 000000459 INF: FPGA: Recv ZSGSRD 30647
17-03-17 21:20:08.748 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:08.748 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:08.748 -07 000000627 INF: FPGA: Recv ZSGSRD 30645
17-03-17 21:20:08.758 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:08.758 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:20:08.758 -07 000000458 INF: FPGA: Recv ZPIEZORD 26705
17-03-17 21:20:08.768 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:08.768 -07 000000480 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.573 V. Piezo Error = -8.7 V.
17-03-17 21:20:08.768 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30648 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30647 (-136.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 30640 (-136.4 uncal um), Max = 30662 (-136.5 uncal um), Pos Noise = 14 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:20:08.768 -07 000000480 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30648, posNoise = 14, negNoise = 8
17-03-17 21:20:08.768 -07 000000480 INF: Z Motor: After move to -0.137198, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:20:08.768 -07 000000480 INF: Z Motor: Settle wait time = 1452 ms, measure time = 103 ms (allowed 150 ms), total time = 1555 ms
17-03-17 21:20:08.768 -07 000000480 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 21:20:08.818 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 21:20:08.818 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:20:08.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:20:08.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:20:08.818 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:20:08.818 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:20:08.818 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:20:08.818 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:20:08.818 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:20:08.818 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:20:08.828 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:20:08.828 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:20:08.838 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:20:08.838 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:20:08.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:20:08.888 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:20:09.088 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:20:09.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:20:09.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:20:09.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 21:20:09.118 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:20:09.128 -07 000000012 INF: FPGA: Recv CAMSNAP
17-03-17 21:20:09.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 21:20:09.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:20:09.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:09.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 21:20:09.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:20:09.228 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:20:09.228 -07 000000415 INF: Autofocus start
17-03-17 21:20:09.228 -07 000000415 INF: MeasureProfile start
17-03-17 21:20:09.228 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:20:09.238 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:20:09.238 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:20:09.238 -07 000000415 INF: MeasureProfile done
17-03-17 21:20:09.238 -07 000000415 INF: X=-5  Z correction [um]=-0.02774208
17-03-17 21:20:09.238 -07 000000415 INF: Autofocus finished
17-03-17 21:20:09.438 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:20:09.438 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:20:09.438 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.137212605731825. ----------
17-03-17 21:20:09.438 -07 000000610 INF: Cycle	49	Tile	13	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:20:09.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28478, sync = True, waitForSettling = True)
17-03-17 21:20:09.448 -07 000000610 INF: Z Motor: Moving to -0.130364 mm, started at -0.137213 mm, distance = 6.85 um
17-03-17 21:20:09.448 -07 000000610 INF: FPGA: Xmit ZDACW 28478\n [Z Motor]
17-03-17 21:20:09.448 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:20:09.458 -07 000000610 INF: FPGA: 'ZDACW 28478' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:09.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:20:09.458 -07 000000382 INF: FPGA: Recv ZDACR 28478
17-03-17 21:20:09.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:09.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:20:09.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:09.618 -07 000000459 INF: FPGA: Recv ZSGSRD 29581
17-03-17 21:20:09.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:09.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:09.628 -07 000000012 INF: FPGA: Recv ZSGSRD 29587
17-03-17 21:20:09.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:09.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:09.638 -07 000000512 INF: FPGA: Recv ZSGSRD 29583
17-03-17 21:20:09.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:09.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:09.648 -07 000000438 INF: FPGA: Recv ZSGSRD 29576
17-03-17 21:20:09.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:09.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:09.658 -07 000000547 INF: FPGA: Recv ZSGSRD 29580
17-03-17 21:20:09.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:09.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:09.668 -07 000000501 INF: FPGA: Recv ZSGSRD 29584
17-03-17 21:20:09.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:09.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:09.678 -07 000000431 INF: FPGA: Recv ZSGSRD 29580
17-03-17 21:20:09.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:09.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:09.688 -07 000000429 INF: FPGA: Recv ZSGSRD 29579
17-03-17 21:20:09.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:09.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:09.698 -07 000000424 INF: FPGA: Recv ZSGSRD 29583
17-03-17 21:20:09.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:09.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:09.708 -07 000000475 INF: FPGA: Recv ZSGSRD 29586
17-03-17 21:20:09.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:09.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:20:09.718 -07 000000576 INF: FPGA: Recv ZPIEZORD 25323
17-03-17 21:20:09.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:09.728 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.345 V. Piezo Error = -9.4 V.
17-03-17 21:20:09.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29582 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29582 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29576 (-129.5 uncal um), Max = 29587 (-129.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 21:20:09.728 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29582, posNoise = 5, negNoise = 6
17-03-17 21:20:09.728 -07 000000610 INF: Z Motor: After move to -0.130364, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:20:09.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 21:20:09.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:20:09.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:20:09.728 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:20:09.728 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:20:09.728 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:20:09.728 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:20:09.728 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:20:09.728 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:20:09.728 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:20:09.728 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:20:09.728 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:20:09.728 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:20:09.728 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 21:20:09.738 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:20:09.738 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:20:09.738 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:20:09.738 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:20:09.738 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:20:09.748 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:20:09.748 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:20:09.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28655 150\n [Camera]
17-03-17 21:20:09.948 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:20:10.378 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 622
17-03-17 21:20:10.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 622
17-03-17 21:20:10.378 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:20:10.378 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:20:10.378 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:20:10.378 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 622
17-03-17 21:20:10.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 622
17-03-17 21:20:10.378 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:20:10.378 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:20:10.378 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:20:10.568 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28655 814
17-03-17 21:20:10.718 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:20:10.758 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 21:20:10.758 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 21:20:10.758 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:10.758 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:20:10.758 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 21:20:10.758 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:20:10.758 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:10.768 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:20:10.768 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 21:20:10.768 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 21:20:10.928 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:20:10.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:20:10.928 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:20:10.928 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:20:10.928 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:20:10.928 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:20:10.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:20:10.928 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:20:10.928 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:20:10.928 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:20:11.118 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:20:11.118 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:20:11.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28655 150' command took 2 ms to send, 1365 ms to get response, and 1369 ms overall
17-03-17 21:20:11.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:20:11.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.130364395588708. ------
17-03-17 21:20:11.248 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:20:11.248 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13678 mm
17-03-17 21:20:11.248 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:20:11.248 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 21:20:11.248 -07 000000569 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 21:20:11.248 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:20:11.248 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29880, sync = True, waitForSettling = False)
17-03-17 21:20:11.248 -07 000000382 INF: Z Motor: Moving to -0.136782 mm, started at -0.130364 mm, distance = -6.42 um
17-03-17 21:20:11.258 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:20:11.258 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:20:11.268 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:11.268 -07 000000501 INF: FPGA: Recv YRDPOS 143081
17-03-17 21:20:11.278 -07 000000382 INF: FPGA: Xmit ZDACW 29880\n [Z Motor]
17-03-17 21:20:11.278 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 21:20:11.278 -07 000000569 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:11.278 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 21:20:11.278 -07 000000569 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:20:11.278 -07 000000569 INF: Y Motor: Moving 1342 steps-19
17-03-17 21:20:11.288 -07 000000382 INF: FPGA: 'ZDACW 29880' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-17 21:20:11.288 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:20:11.288 -07 000000512 INF: FPGA: Recv ZDACR 29880
17-03-17 21:20:11.298 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:11.298 -07 000000382 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 21:20:11.298 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:20:11.338 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 21:20:11.338 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 21:20:11.338 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:11.338 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 406 ms.
17-03-17 21:20:11.338 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:20:11.338 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:11.338 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:20:11.338 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 21:20:11.338 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 21:20:11.348 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 21:20:11.458 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:20:11.458 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:20:11.678 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 21:20:11.678 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 372 ms to get response, and 399 ms overall
17-03-17 21:20:11.718 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:11.718 -07 000000458 INF: FPGA: Recv YRDPOS 144770
17-03-17 21:20:11.728 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:11.728 -07 000000569 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:11.728 -07 000000569 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 21:20:11.728 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.839 mm, average velocity = 2.104 mm/sec
17-03-17 21:20:11.868 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:20:11.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:20:12.638 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.019446,
17-03-17 21:20:12.678 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:12.678 -07 000000431 INF: FPGA: Recv YRDPOS 144771
17-03-17 21:20:12.688 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:12.688 -07 000000569 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:12.708 -07 000000569 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:20:12.708 -07 000000569 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:20:12.708 -07 000000569 INF: Y Motor: Moved to 70.6890 after 1459 ms (table move)
17-03-17 21:20:12.708 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136782 mm (DAC = 29880)
17-03-17 21:20:12.708 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:12.718 -07 000000424 INF: FPGA: Recv ZSGSRD 30579
17-03-17 21:20:12.718 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 21:20:12.718 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:12.718 -07 000000431 INF: FPGA: Recv ZSGSRD 30581
17-03-17 21:20:12.728 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:12.728 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:12.728 -07 000000626 INF: FPGA: Recv ZSGSRD 30585
17-03-17 21:20:12.738 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:12.738 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:12.738 -07 000000458 INF: FPGA: Recv ZSGSRD 30577
17-03-17 21:20:12.748 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:12.748 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:12.748 -07 000000569 INF: FPGA: Recv ZSGSRD 30578
17-03-17 21:20:12.758 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:12.768 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:12.768 -07 000000512 INF: FPGA: Recv ZSGSRD 30588
17-03-17 21:20:12.778 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:20:12.778 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:12.778 -07 000000459 INF: FPGA: Recv ZSGSRD 30586
17-03-17 21:20:12.788 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:12.788 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:12.788 -07 000000429 INF: FPGA: Recv ZSGSRD 30581
17-03-17 21:20:12.798 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:12.798 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:12.798 -07 000000382 INF: FPGA: Recv ZSGSRD 30580
17-03-17 21:20:12.808 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:12.808 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:12.808 -07 000000547 INF: FPGA: Recv ZSGSRD 30587
17-03-17 21:20:12.818 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:12.818 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:20:12.818 -07 000000458 INF: FPGA: Recv ZPIEZORD 26623
17-03-17 21:20:12.828 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:12.828 -07 000000475 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.559 V. Piezo Error = -8.7 V.
17-03-17 21:20:12.828 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30582 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30581 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30577 (-136.0 uncal um), Max = 30588 (-136.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:20:12.828 -07 000000475 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30582, posNoise = 6, negNoise = 5
17-03-17 21:20:12.828 -07 000000475 INF: Z Motor: After move to -0.136782, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:20:12.828 -07 000000475 INF: Z Motor: Settle wait time = 1460 ms, measure time = 115 ms (allowed 150 ms), total time = 1575 ms
17-03-17 21:20:12.828 -07 000000475 INF: Z Motor: Waiting extra 35 ms after reading position to reach expected total of 150 ms
17-03-17 21:20:12.868 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-17 21:20:12.868 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:20:12.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:20:12.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:20:12.868 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:20:12.868 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:20:12.868 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:20:12.868 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:20:12.868 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:20:12.868 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:20:12.878 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:20:12.878 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:20:12.888 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 21:20:12.888 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 21:20:12.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:20:12.938 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 21:20:13.138 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 21:20:13.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 21:20:13.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:20:13.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:20:13.168 -07 000000012 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:20:13.168 -07 000000431 INF: FPGA: Recv CAMSNAP
17-03-17 21:20:13.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 21:20:13.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:20:13.258 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:13.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:20:13.258 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:20:13.278 -07 000000429 INF: Autofocus start
17-03-17 21:20:13.278 -07 000000429 INF: MeasureProfile start
17-03-17 21:20:13.278 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:20:13.278 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:20:13.288 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:20:13.288 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:20:13.288 -07 000000429 INF: MeasureProfile done
17-03-17 21:20:13.288 -07 000000429 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 21:20:13.288 -07 000000429 INF: Autofocus finished
17-03-17 21:20:13.488 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:20:13.488 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:20:13.488 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.136788607730469. ----------
17-03-17 21:20:13.488 -07 000000610 INF: Cycle	49	Tile	14	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:20:13.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28375, sync = True, waitForSettling = True)
17-03-17 21:20:13.498 -07 000000610 INF: Z Motor: Moving to -0.129892 mm, started at -0.136789 mm, distance = 6.90 um
17-03-17 21:20:13.498 -07 000000610 INF: FPGA: Xmit ZDACW 28375\n [Z Motor]
17-03-17 21:20:13.498 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 21:20:13.508 -07 000000610 INF: FPGA: 'ZDACW 28375' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:20:13.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:20:13.508 -07 000000576 INF: FPGA: Recv ZDACR 28375
17-03-17 21:20:13.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:13.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:20:13.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:13.668 -07 000000012 INF: FPGA: Recv ZSGSRD 29512
17-03-17 21:20:13.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:13.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:13.678 -07 000000480 INF: FPGA: Recv ZSGSRD 29507
17-03-17 21:20:13.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:13.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:13.688 -07 000000476 INF: FPGA: Recv ZSGSRD 29505
17-03-17 21:20:13.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:13.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:13.698 -07 000000459 INF: FPGA: Recv ZSGSRD 29512
17-03-17 21:20:13.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:13.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:13.708 -07 000000627 INF: FPGA: Recv ZSGSRD 29507
17-03-17 21:20:13.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:13.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:13.718 -07 000000512 INF: FPGA: Recv ZSGSRD 29516
17-03-17 21:20:13.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:13.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:13.728 -07 000000431 INF: FPGA: Recv ZSGSRD 29508
17-03-17 21:20:13.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:13.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:13.738 -07 000000382 INF: FPGA: Recv ZSGSRD 29501
17-03-17 21:20:13.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:13.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:13.748 -07 000000501 INF: FPGA: Recv ZSGSRD 29514
17-03-17 21:20:13.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:13.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:13.758 -07 000000415 INF: FPGA: Recv ZSGSRD 29508
17-03-17 21:20:13.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:13.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:20:13.768 -07 000000424 INF: FPGA: Recv ZPIEZORD 25213
17-03-17 21:20:13.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:13.778 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.330 V. Piezo Error = -9.4 V.
17-03-17 21:20:13.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29509 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29508 (-129.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29501 (-129.1 uncal um), Max = 29516 (-129.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:20:13.778 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29509, posNoise = 7, negNoise = 8
17-03-17 21:20:13.778 -07 000000610 INF: Z Motor: After move to -0.129892, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:20:13.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:20:13.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:20:13.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:20:13.778 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:20:13.778 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:20:13.778 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:20:13.778 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:20:13.778 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:20:13.778 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:20:13.778 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:20:13.788 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:20:13.788 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 21:20:13.788 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:20:13.788 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:20:13.788 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:20:13.788 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:20:13.788 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:20:13.798 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:20:13.798 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:20:13.798 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 21:20:13.798 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 21:20:13.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28552 150\n [Camera]
17-03-17 21:20:13.998 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:20:14.428 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:20:14.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:20:14.428 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:20:14.438 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:20:14.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:20:14.438 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:20:14.438 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:20:14.438 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:20:14.438 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:20:14.438 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-17 21:20:14.618 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28552 814
17-03-17 21:20:14.768 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:20:14.818 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 21:20:14.818 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 21:20:14.818 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:14.818 -07 000000458 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 21:20:14.818 -07 000000458 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 21:20:14.818 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:14.818 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:20:14.818 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:20:14.818 -07 000000458 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:20:14.828 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:20:14.978 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1171
17-03-17 21:20:14.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1171
17-03-17 21:20:14.978 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:20:14.978 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:20:14.978 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 21:20:14.978 -07 000000012 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1171
17-03-17 21:20:14.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1171
17-03-17 21:20:14.988 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:20:14.988 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:20:14.988 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:20:15.168 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1362
17-03-17 21:20:15.168 -07 000000458 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:20:15.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28552 150' command took 2 ms to send, 1357 ms to get response, and 1370 ms overall
17-03-17 21:20:15.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:20:15.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.129895428102359. ------
17-03-17 21:20:15.178 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:20:15.178 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13616 mm
17-03-17 21:20:15.178 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:20:15.178 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 21:20:15.178 -07 000000512 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 21:20:15.178 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29745, sync = True, waitForSettling = False)
17-03-17 21:20:15.178 -07 000000438 INF: Z Motor: Moving to -0.136164 mm, started at -0.129895 mm, distance = -6.27 um
17-03-17 21:20:15.178 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:20:15.188 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:20:15.188 -07 000000438 INF: FPGA: Xmit ZDACW 29745\n [Z Motor]
17-03-17 21:20:15.188 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 21:20:15.198 -07 000000438 INF: FPGA: 'ZDACW 29745' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 21:20:15.198 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:15.198 -07 000000382 INF: FPGA: Recv YRDPOS 144771
17-03-17 21:20:15.208 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:20:15.208 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 21:20:15.208 -07 000000512 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:15.208 -07 000000512 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:20:15.208 -07 000000512 INF: Y Motor: Moving 1350 steps-29
17-03-17 21:20:15.448 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 458 ms.
17-03-17 21:20:15.448 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 458 ms.
17-03-17 21:20:15.448 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:15.448 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:20:15.448 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 0 ms to get response, and 262 ms overall
17-03-17 21:20:15.448 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 462 ms.
17-03-17 21:20:15.448 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 464 ms.
17-03-17 21:20:15.448 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:15.448 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:20:15.448 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:20:15.448 -07 000000458 INF: FPGA: Recv ZDACR 29745
17-03-17 21:20:15.448 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:20:15.448 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 471 ms.
17-03-17 21:20:15.458 -07 000000438 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 259 ms overall
17-03-17 21:20:15.458 -07 000000438 INF: Z Motor: MoveAbsStepped took 274 ms (did NOT wait for settling yet))
17-03-17 21:20:15.458 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:20:15.458 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 471 ms.
17-03-17 21:20:15.838 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 21:20:15.838 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 372 ms to get response, and 390 ms overall
17-03-17 21:20:15.888 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:15.888 -07 000000424 INF: FPGA: Recv YRDPOS 146471
17-03-17 21:20:15.898 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:15.898 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:15.898 -07 000000512 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 21:20:15.898 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 632 ms, distance = 0.844 mm, average velocity = 1.335 mm/sec
17-03-17 21:20:16.848 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:16.848 -07 000000627 INF: FPGA: Recv YRDPOS 146471
17-03-17 21:20:16.858 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:16.858 -07 000000512 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:16.868 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:20:16.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:20:16.878 -07 000000512 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:20:16.878 -07 000000512 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:20:16.878 -07 000000512 INF: Y Motor: Moved to 71.5190 after 1699 ms (table move)
17-03-17 21:20:16.878 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136164 mm (DAC = 29745)
17-03-17 21:20:16.878 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:16.888 -07 000000429 INF: FPGA: Recv ZSGSRD 30484
17-03-17 21:20:16.888 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 21:20:16.888 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:16.888 -07 000000480 INF: FPGA: Recv ZSGSRD 30487
17-03-17 21:20:16.898 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:20:16.898 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:16.898 -07 000000547 INF: FPGA: Recv ZSGSRD 30488
17-03-17 21:20:16.908 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:16.908 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:16.908 -07 000000475 INF: FPGA: Recv ZSGSRD 30490
17-03-17 21:20:16.918 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:16.918 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:16.918 -07 000000626 INF: FPGA: Recv ZSGSRD 30474
17-03-17 21:20:16.928 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:16.928 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:16.928 -07 000000429 INF: FPGA: Recv ZSGSRD 30483
17-03-17 21:20:16.938 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:16.938 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:16.938 -07 000000480 INF: FPGA: Recv ZSGSRD 30487
17-03-17 21:20:16.948 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:16.948 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:16.948 -07 000000547 INF: FPGA: Recv ZSGSRD 30488
17-03-17 21:20:16.958 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:16.958 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:16.958 -07 000000438 INF: FPGA: Recv ZSGSRD 30491
17-03-17 21:20:16.968 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:16.968 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:16.968 -07 000000424 INF: FPGA: Recv ZSGSRD 30489
17-03-17 21:20:16.978 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:16.978 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:20:16.978 -07 000000429 INF: FPGA: Recv ZPIEZORD 26534
17-03-17 21:20:16.988 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:16.988 -07 000000501 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.539 V. Piezo Error = -8.7 V.
17-03-17 21:20:16.988 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30486 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30488 (-135.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30474 (-135.3 uncal um), Max = 30491 (-135.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 21:20:16.988 -07 000000501 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30486, posNoise = 5, negNoise = 12
17-03-17 21:20:16.988 -07 000000501 INF: Z Motor: After move to -0.136164, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:20:16.988 -07 000000501 INF: Z Motor: Settle wait time = 1702 ms, measure time = 102 ms (allowed 150 ms), total time = 1804 ms
17-03-17 21:20:16.988 -07 000000501 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 21:20:17.038 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1856 ms
17-03-17 21:20:17.038 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:20:17.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:20:17.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:20:17.048 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:20:17.048 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:20:17.048 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:20:17.048 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:20:17.048 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:20:17.048 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:20:17.058 -07 000000012 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 21:20:17.058 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:20:17.058 -07 000000012 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 21:20:17.058 -07 000000012 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 21:20:17.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:20:17.118 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:20:17.318 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:20:17.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:20:17.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:20:17.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:20:17.358 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:20:17.358 -07 000000512 INF: FPGA: Recv CAMSNAP
17-03-17 21:20:17.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 21:20:17.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 21:20:17.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:17.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:20:17.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 21:20:17.458 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:20:17.458 -07 000000476 INF: Autofocus start
17-03-17 21:20:17.458 -07 000000476 INF: MeasureProfile start
17-03-17 21:20:17.458 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:20:17.468 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:20:17.468 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:20:17.478 -07 000000476 INF: MeasureProfile done
17-03-17 21:20:17.478 -07 000000476 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:20:17.478 -07 000000476 INF: Autofocus finished
17-03-17 21:20:17.668 -07 000000012 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:20:17.668 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:20:17.668 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.13617188336486. ----------
17-03-17 21:20:17.668 -07 000000610 INF: Cycle	49	Tile	15	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:20:17.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28252, sync = True, waitForSettling = True)
17-03-17 21:20:17.678 -07 000000610 INF: Z Motor: Moving to -0.129329 mm, started at -0.136172 mm, distance = 6.84 um
17-03-17 21:20:17.688 -07 000000610 INF: FPGA: Xmit ZDACW 28252\n [Z Motor]
17-03-17 21:20:17.688 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:20:17.698 -07 000000610 INF: FPGA: 'ZDACW 28252' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:20:17.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:20:17.698 -07 000000431 INF: FPGA: Recv ZDACR 28252
17-03-17 21:20:17.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:17.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:20:17.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:17.858 -07 000000569 INF: FPGA: Recv ZSGSRD 29420
17-03-17 21:20:17.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:17.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:17.868 -07 000000429 INF: FPGA: Recv ZSGSRD 29420
17-03-17 21:20:17.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:17.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:17.878 -07 000000476 INF: FPGA: Recv ZSGSRD 29421
17-03-17 21:20:17.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:17.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:17.888 -07 000000547 INF: FPGA: Recv ZSGSRD 29421
17-03-17 21:20:17.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:17.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:17.898 -07 000000627 INF: FPGA: Recv ZSGSRD 29424
17-03-17 21:20:17.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:17.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:17.908 -07 000000569 INF: FPGA: Recv ZSGSRD 29426
17-03-17 21:20:17.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:17.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:17.918 -07 000000608 INF: FPGA: Recv ZSGSRD 29420
17-03-17 21:20:17.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:17.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:17.928 -07 000000501 INF: FPGA: Recv ZSGSRD 29415
17-03-17 21:20:17.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:17.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:17.938 -07 000000431 INF: FPGA: Recv ZSGSRD 29424
17-03-17 21:20:17.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:17.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:17.948 -07 000000627 INF: FPGA: Recv ZSGSRD 29426
17-03-17 21:20:17.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:17.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:20:17.958 -07 000000438 INF: FPGA: Recv ZPIEZORD 25137
17-03-17 21:20:17.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:17.968 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.311 V. Piezo Error = -9.4 V.
17-03-17 21:20:17.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29422 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29421 (-128.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29415 (-128.5 uncal um), Max = 29426 (-128.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:20:17.968 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29422, posNoise = 4, negNoise = 7
17-03-17 21:20:17.968 -07 000000610 INF: Z Motor: After move to -0.129329, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:20:17.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 21:20:17.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:20:17.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:20:17.968 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:20:17.968 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:20:17.968 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:20:17.968 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:20:17.968 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:20:17.968 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:20:17.968 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 21:20:17.968 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:20:17.968 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:20:17.968 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:20:17.978 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:20:17.978 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:20:17.978 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:20:17.978 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:20:17.978 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 21:20:17.978 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:20:17.988 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:20:17.988 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:20:17.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28429 150\n [Camera]
17-03-17 21:20:17.998 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.068429,
17-03-17 21:20:18.188 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:20:18.618 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:20:18.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:20:18.628 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:20:18.628 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:20:18.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:20:18.628 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:20:18.628 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:20:18.628 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:20:18.638 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:20:18.638 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 21:20:18.818 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28429 814
17-03-17 21:20:18.968 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:20:19.008 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 21:20:19.008 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 21:20:19.008 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:19.018 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 21:20:19.018 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 21:20:19.018 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:19.018 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:20:19.018 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 21:20:19.018 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:20:19.028 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:20:19.168 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:20:19.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:20:19.168 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:20:19.178 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:20:19.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:20:19.178 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:20:19.178 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:20:19.178 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:20:19.178 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:20:19.178 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 21:20:19.358 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:20:19.368 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:20:19.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28429 150' command took 2 ms to send, 1360 ms to get response, and 1377 ms overall
17-03-17 21:20:19.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:20:19.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.129336521646026. ------
17-03-17 21:20:19.368 -07 000000476 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:20:19.368 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13571 mm
17-03-17 21:20:19.368 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:20:19.368 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29645, sync = True, waitForSettling = False)
17-03-17 21:20:19.368 -07 000000627 INF: Z Motor: Moving to -0.135706 mm, started at -0.129337 mm, distance = -6.37 um
17-03-17 21:20:19.368 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 21:20:19.368 -07 000000547 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 21:20:19.368 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:20:19.378 -07 000000476 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:20:19.378 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:19.378 -07 000000438 INF: FPGA: Recv YRDPOS 146471
17-03-17 21:20:19.388 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:20:19.388 -07 000000547 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:19.388 -07 000000547 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:20:19.388 -07 000000547 INF: Y Motor: Moving 1350 steps-28
17-03-17 21:20:19.388 -07 000000476 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:20:19.398 -07 000000627 INF: FPGA: Xmit ZDACW 29645\n [Z Motor]
17-03-17 21:20:19.398 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 21:20:19.408 -07 000000627 INF: FPGA: 'ZDACW 29645' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 21:20:19.408 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:20:19.418 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:20:19.418 -07 000000459 INF: FPGA: Recv ZDACR 29645
17-03-17 21:20:19.428 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:20:19.428 -07 000000627 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 21:20:19.578 -07 000000458 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 21:20:19.578 -07 000000458 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:20:19.578 -07 000000458 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:19.578 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 21:20:19.578 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 21:20:19.578 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:19.578 -07 000000458 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:20:19.578 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:20:19.578 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 21:20:19.588 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:20:19.588 -07 000000458 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:20:19.588 -07 000000476 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 21:20:19.778 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 21:20:19.778 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 21:20:19.818 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:19.818 -07 000000382 INF: FPGA: Recv YRDPOS 148172
17-03-17 21:20:19.828 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:20:19.828 -07 000000547 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:19.828 -07 000000547 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 21:20:19.828 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 21:20:20.778 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:20.778 -07 000000627 INF: FPGA: Recv YRDPOS 148172
17-03-17 21:20:20.788 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:20.788 -07 000000547 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:20.808 -07 000000547 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:20:20.808 -07 000000547 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:20:20.808 -07 000000547 INF: Y Motor: Moved to 72.3496 after 1440 ms (table move)
17-03-17 21:20:20.818 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135706 mm (DAC = 29645)
17-03-17 21:20:20.818 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:20.818 -07 000000429 INF: FPGA: Recv ZSGSRD 30412
17-03-17 21:20:20.828 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 21:20:20.828 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:20.828 -07 000000576 INF: FPGA: Recv ZSGSRD 30416
17-03-17 21:20:20.838 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:20.838 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:20.838 -07 000000012 INF: FPGA: Recv ZSGSRD 30414
17-03-17 21:20:20.848 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:20.848 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:20.848 -07 000000431 INF: FPGA: Recv ZSGSRD 30416
17-03-17 21:20:20.858 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:20.858 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:20.858 -07 000000547 INF: FPGA: Recv ZSGSRD 30419
17-03-17 21:20:20.868 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:20.868 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:20.868 -07 000000438 INF: FPGA: Recv ZSGSRD 30411
17-03-17 21:20:20.878 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:20.878 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:20.878 -07 000000415 INF: FPGA: Recv ZSGSRD 30416
17-03-17 21:20:20.888 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:20.888 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:20.888 -07 000000547 INF: FPGA: Recv ZSGSRD 30412
17-03-17 21:20:20.898 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:20.898 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:20.898 -07 000000429 INF: FPGA: Recv ZSGSRD 30414
17-03-17 21:20:20.908 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:20.908 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:20.908 -07 000000626 INF: FPGA: Recv ZSGSRD 30415
17-03-17 21:20:20.918 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:20.918 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:20:20.918 -07 000000627 INF: FPGA: Recv ZPIEZORD 26455
17-03-17 21:20:20.928 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:20.928 -07 000000480 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.524 V. Piezo Error = -8.7 V.
17-03-17 21:20:20.928 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30414 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30414 (-134.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30411 (-134.9 uncal um), Max = 30419 (-134.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 21:20:20.928 -07 000000480 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30414, posNoise = 5, negNoise = 3
17-03-17 21:20:20.928 -07 000000480 INF: Z Motor: After move to -0.135706, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:20:20.928 -07 000000480 INF: Z Motor: Settle wait time = 1445 ms, measure time = 108 ms (allowed 150 ms), total time = 1553 ms
17-03-17 21:20:20.928 -07 000000480 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 21:20:20.978 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 21:20:20.978 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:20:20.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:20:20.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:20:20.978 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:20:20.978 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:20:20.978 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:20:20.978 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:20:20.978 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:20:20.978 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:20:20.978 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:20:20.988 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:20:20.998 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 21:20:20.998 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 21:20:20.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:20:21.048 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:20:21.248 -07 000000424 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:20:21.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:20:21.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:20:21.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 21:20:21.278 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:20:21.288 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 21:20:21.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 21:20:21.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:20:21.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:21.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:20:21.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:20:21.388 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:20:21.388 -07 000000576 INF: Autofocus start
17-03-17 21:20:21.388 -07 000000576 INF: MeasureProfile start
17-03-17 21:20:21.388 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:20:21.398 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:20:21.398 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:20:21.398 -07 000000576 INF: MeasureProfile done
17-03-17 21:20:21.398 -07 000000576 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:20:21.398 -07 000000576 INF: Autofocus finished
17-03-17 21:20:21.598 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:20:21.598 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:20:21.598 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135709340090653. ----------
17-03-17 21:20:21.598 -07 000000610 INF: Cycle	49	Tile	16	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:20:21.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28152, sync = True, waitForSettling = True)
17-03-17 21:20:21.608 -07 000000610 INF: Z Motor: Moving to -0.128872 mm, started at -0.135709 mm, distance = 6.84 um
17-03-17 21:20:21.608 -07 000000610 INF: FPGA: Xmit ZDACW 28152\n [Z Motor]
17-03-17 21:20:21.608 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 21:20:21.618 -07 000000610 INF: FPGA: 'ZDACW 28152' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:21.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:20:21.618 -07 000000431 INF: FPGA: Recv ZDACR 28152
17-03-17 21:20:21.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:21.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:20:21.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:21.778 -07 000000012 INF: FPGA: Recv ZSGSRD 29352
17-03-17 21:20:21.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:21.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:21.788 -07 000000476 INF: FPGA: Recv ZSGSRD 29349
17-03-17 21:20:21.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:21.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:21.798 -07 000000431 INF: FPGA: Recv ZSGSRD 29345
17-03-17 21:20:21.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:20:21.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:21.808 -07 000000429 INF: FPGA: Recv ZSGSRD 29349
17-03-17 21:20:21.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:21.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:21.818 -07 000000547 INF: FPGA: Recv ZSGSRD 29351
17-03-17 21:20:21.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:21.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:21.828 -07 000000438 INF: FPGA: Recv ZSGSRD 29349
17-03-17 21:20:21.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:21.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:21.838 -07 000000480 INF: FPGA: Recv ZSGSRD 29344
17-03-17 21:20:21.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:21.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:21.848 -07 000000475 INF: FPGA: Recv ZSGSRD 29349
17-03-17 21:20:21.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:21.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:21.858 -07 000000576 INF: FPGA: Recv ZSGSRD 29349
17-03-17 21:20:21.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:21.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:21.868 -07 000000458 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:20:21.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:20:21.868 -07 000000438 INF: FPGA: Recv ZSGSRD 29353
17-03-17 21:20:21.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:21.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:20:21.878 -07 000000429 INF: FPGA: Recv ZPIEZORD 25058
17-03-17 21:20:21.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:21.888 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.296 V. Piezo Error = -9.4 V.
17-03-17 21:20:21.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29349 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29349 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29344 (-128.1 uncal um), Max = 29353 (-128.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:20:21.888 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29349, posNoise = 4, negNoise = 5
17-03-17 21:20:21.888 -07 000000610 INF: Z Motor: After move to -0.128872, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:20:21.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 21:20:21.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:20:21.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:20:21.888 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:20:21.888 -07 000000012 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:20:21.888 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:20:21.888 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:20:21.888 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:20:21.888 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:20:21.888 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:20:21.888 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:20:21.888 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:20:21.888 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:20:21.888 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:20:21.898 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:20:21.898 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:20:21.898 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:20:21.908 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 21:20:21.908 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:20:21.908 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 21:20:21.908 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 21:20:21.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28329 150\n [Camera]
17-03-17 21:20:22.108 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:20:22.538 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 623
17-03-17 21:20:22.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 623
17-03-17 21:20:22.538 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:20:22.538 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:20:22.538 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:20:22.538 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 623
17-03-17 21:20:22.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 623
17-03-17 21:20:22.548 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:20:22.548 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:20:22.548 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:20:22.728 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28329 814
17-03-17 21:20:22.878 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:20:22.918 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 21:20:22.918 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:20:22.918 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:22.918 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 21:20:22.918 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 21:20:22.918 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:22.928 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:20:22.928 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 21:20:22.928 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:20:22.928 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 21:20:23.088 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:20:23.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:20:23.088 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:20:23.088 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:20:23.088 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 21:20:23.088 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:20:23.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:20:23.098 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:20:23.098 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:20:23.098 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 21:20:23.278 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1365
17-03-17 21:20:23.278 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:20:23.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28329 150' command took 2 ms to send, 1367 ms to get response, and 1372 ms overall
17-03-17 21:20:23.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:20:23.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128867554159677. ------
17-03-17 21:20:23.288 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:20:23.288 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13536 mm
17-03-17 21:20:23.288 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:20:23.288 -07 000000476 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:20:23.288 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 21:20:23.288 -07 000000480 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 21:20:23.288 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 29569, sync = True, waitForSettling = False)
17-03-17 21:20:23.288 -07 000000626 INF: Z Motor: Moving to -0.135358 mm, started at -0.128868 mm, distance = -6.49 um
17-03-17 21:20:23.408 -07 000000626 INF: FPGA: Xmit ZDACW 29569\n [Z Motor]
17-03-17 21:20:23.408 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 124 ms overall
17-03-17 21:20:23.418 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:20:23.418 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 21:20:23.418 -07 000000626 INF: FPGA: 'ZDACW 29569' command took 0 ms to send, 1 ms to get response, and 123 ms overall
17-03-17 21:20:23.428 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:23.428 -07 000000415 INF: FPGA: Recv YRDPOS 148173
17-03-17 21:20:23.438 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 142 ms overall
17-03-17 21:20:23.438 -07 000000480 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:23.438 -07 000000480 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:20:23.438 -07 000000480 INF: Y Motor: Moving 1348 steps-27
17-03-17 21:20:23.448 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:20:23.448 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.045313,
17-03-17 21:20:23.448 -07 000000547 INF: FPGA: Recv ZDACR 29569
17-03-17 21:20:23.458 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 38 ms overall
17-03-17 21:20:23.458 -07 000000626 INF: Z Motor: MoveAbsStepped took 162 ms (did NOT wait for settling yet))
17-03-17 21:20:23.458 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:20:23.488 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 21:20:23.488 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 21:20:23.488 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:23.488 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 21:20:23.488 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 21:20:23.488 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:23.498 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:20:23.498 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 21:20:23.498 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 21:20:23.498 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 21:20:23.618 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:20:23.618 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 204 ms overall
17-03-17 21:20:23.828 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 21:20:23.828 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 21:20:23.868 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:23.868 -07 000000458 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:20:23.878 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:20:23.878 -07 000000480 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:23.878 -07 000000480 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 21:20:23.878 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.843 mm, average velocity = 2.145 mm/sec
17-03-17 21:20:24.828 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:24.828 -07 000000429 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:20:24.838 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:24.838 -07 000000480 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:24.858 -07 000000480 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:20:24.858 -07 000000480 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 21:20:24.858 -07 000000480 INF: Y Motor: Moved to 73.1763 after 1565 ms (table move)
17-03-17 21:20:24.858 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135358 mm (DAC = 29569)
17-03-17 21:20:24.858 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:24.858 -07 000000459 INF: FPGA: Recv ZSGSRD 30367
17-03-17 21:20:24.868 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:20:24.868 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:24.868 -07 000000415 INF: FPGA: Recv ZSGSRD 30355
17-03-17 21:20:24.878 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:24.878 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:24.878 -07 000000576 INF: FPGA: Recv ZSGSRD 30364
17-03-17 21:20:24.888 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:24.888 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:24.888 -07 000000458 INF: FPGA: Recv ZSGSRD 30364
17-03-17 21:20:24.898 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:24.898 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:24.898 -07 000000480 INF: FPGA: Recv ZSGSRD 30361
17-03-17 21:20:24.908 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:24.908 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:24.908 -07 000000424 INF: FPGA: Recv ZSGSRD 30360
17-03-17 21:20:24.918 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:24.918 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:24.918 -07 000000429 INF: FPGA: Recv ZSGSRD 30366
17-03-17 21:20:24.928 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:24.928 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:24.928 -07 000000547 INF: FPGA: Recv ZSGSRD 30349
17-03-17 21:20:24.938 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:24.938 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:24.938 -07 000000475 INF: FPGA: Recv ZSGSRD 30364
17-03-17 21:20:24.948 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:24.948 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:24.948 -07 000000480 INF: FPGA: Recv ZSGSRD 30366
17-03-17 21:20:24.958 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:24.958 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:20:24.958 -07 000000012 INF: FPGA: Recv ZPIEZORD 26398
17-03-17 21:20:24.968 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:24.968 -07 000000608 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.512 V. Piezo Error = -8.7 V.
17-03-17 21:20:24.968 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30362 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30364 (-134.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30349 (-134.5 uncal um), Max = 30367 (-134.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 21:20:24.968 -07 000000608 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30362, posNoise = 5, negNoise = 13
17-03-17 21:20:24.968 -07 000000608 INF: Z Motor: After move to -0.135358, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:20:24.968 -07 000000608 INF: Z Motor: Settle wait time = 1568 ms, measure time = 105 ms (allowed 150 ms), total time = 1673 ms
17-03-17 21:20:24.968 -07 000000608 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 21:20:25.018 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1726 ms
17-03-17 21:20:25.018 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:20:25.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:20:25.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:20:25.018 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:20:25.018 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:20:25.018 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:20:25.018 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:20:25.018 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:20:25.018 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:20:25.028 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:20:25.028 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:20:25.028 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:20:25.028 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:20:25.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:20:25.078 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 21:20:25.278 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 21:20:25.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 21:20:25.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:20:25.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:20:25.318 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:20:25.318 -07 000000424 INF: FPGA: Recv CAMSNAP
17-03-17 21:20:25.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 21:20:25.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 21:20:25.398 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:25.398 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:20:25.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 21:20:25.418 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:20:25.418 -07 000000569 INF: Autofocus start
17-03-17 21:20:25.418 -07 000000569 INF: MeasureProfile start
17-03-17 21:20:25.418 -07 000000012 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:20:25.428 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:20:25.428 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:20:25.428 -07 000000569 INF: MeasureProfile done
17-03-17 21:20:25.428 -07 000000569 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:20:25.428 -07 000000569 INF: Autofocus finished
17-03-17 21:20:25.628 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:20:25.628 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:20:25.628 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135375281059281. ----------
17-03-17 21:20:25.638 -07 000000610 INF: Cycle	49	Tile	17	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:20:25.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28094, sync = True, waitForSettling = True)
17-03-17 21:20:25.638 -07 000000610 INF: Z Motor: Moving to -0.128606 mm, started at -0.135375 mm, distance = 6.77 um
17-03-17 21:20:25.638 -07 000000610 INF: FPGA: Xmit ZDACW 28094\n [Z Motor]
17-03-17 21:20:25.638 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:20:25.648 -07 000000610 INF: FPGA: 'ZDACW 28094' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:20:25.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:20:25.648 -07 000000012 INF: FPGA: Recv ZDACR 28094
17-03-17 21:20:25.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:25.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:20:25.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:25.808 -07 000000626 INF: FPGA: Recv ZSGSRD 29309
17-03-17 21:20:25.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:25.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:25.818 -07 000000608 INF: FPGA: Recv ZSGSRD 29308
17-03-17 21:20:25.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:25.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:25.828 -07 000000512 INF: FPGA: Recv ZSGSRD 29310
17-03-17 21:20:25.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:25.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:25.838 -07 000000501 INF: FPGA: Recv ZSGSRD 29306
17-03-17 21:20:25.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:25.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:25.848 -07 000000458 INF: FPGA: Recv ZSGSRD 29307
17-03-17 21:20:25.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:25.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:25.858 -07 000000576 INF: FPGA: Recv ZSGSRD 29310
17-03-17 21:20:25.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:25.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:25.868 -07 000000569 INF: FPGA: Recv ZSGSRD 29312
17-03-17 21:20:25.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:25.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:25.878 -07 000000475 INF: FPGA: Recv ZSGSRD 29310
17-03-17 21:20:25.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:25.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:25.888 -07 000000480 INF: FPGA: Recv ZSGSRD 29301
17-03-17 21:20:25.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:25.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:25.898 -07 000000012 INF: FPGA: Recv ZSGSRD 29307
17-03-17 21:20:25.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:25.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:20:25.908 -07 000000576 INF: FPGA: Recv ZPIEZORD 25030
17-03-17 21:20:25.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:25.918 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.287 V. Piezo Error = -9.4 V.
17-03-17 21:20:25.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29308 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29308 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29301 (-127.8 uncal um), Max = 29312 (-127.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:20:25.918 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29308, posNoise = 4, negNoise = 7
17-03-17 21:20:25.918 -07 000000610 INF: Z Motor: After move to -0.128606, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:20:25.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 21:20:25.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:20:25.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:20:25.918 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:20:25.918 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:20:25.918 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:20:25.918 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:20:25.918 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:20:25.918 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:20:25.918 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:20:25.918 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:20:25.918 -07 000000012 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:20:25.918 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:20:25.928 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:20:25.928 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:20:25.928 -07 000000012 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:20:25.928 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:20:25.938 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:20:25.938 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:20:25.938 -07 000000012 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 21:20:25.938 -07 000000012 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 21:20:25.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28270 150\n [Camera]
17-03-17 21:20:26.138 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 21:20:26.568 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:20:26.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:20:26.568 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:20:26.568 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:20:26.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:20:26.568 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:20:26.578 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:20:26.578 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-17 21:20:26.578 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:20:26.578 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 21:20:26.758 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28270 814
17-03-17 21:20:26.868 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:20:26.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:20:26.908 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:20:26.968 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 21:20:26.968 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 21:20:26.968 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:26.968 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 21:20:26.968 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 21:20:26.968 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:26.978 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 21:20:26.978 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 21:20:26.978 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:20:26.988 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 21:20:27.118 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:20:27.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:20:27.118 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:20:27.118 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:20:27.118 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 21:20:27.118 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:20:27.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:20:27.118 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:20:27.118 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:20:27.118 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 21:20:27.308 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:20:27.308 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:20:27.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28270 150' command took 2 ms to send, 1365 ms to get response, and 1369 ms overall
17-03-17 21:20:27.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:20:27.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128604161461865. ------
17-03-17 21:20:27.318 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:20:27.318 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13495 mm
17-03-17 21:20:27.318 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:20:27.318 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:20:27.428 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 116 ms overall
17-03-17 21:20:27.428 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:20:27.428 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 21:20:27.428 -07 000000459 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 21:20:27.428 -07 000000012 INF: Z Motor: Entering MoveAbsStepped (DAC = 29481, sync = True, waitForSettling = False)
17-03-17 21:20:27.428 -07 000000012 INF: Z Motor: Moving to -0.134955 mm, started at -0.128604 mm, distance = -6.35 um
17-03-17 21:20:27.438 -07 000000012 INF: FPGA: Xmit ZDACW 29481\n [Z Motor]
17-03-17 21:20:27.438 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 21:20:27.448 -07 000000012 INF: FPGA: 'ZDACW 29481' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 21:20:27.448 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:27.448 -07 000000547 INF: FPGA: Recv YRDPOS 149865
17-03-17 21:20:27.458 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 21:20:27.458 -07 000000459 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:27.458 -07 000000459 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:20:27.458 -07 000000459 INF: Y Motor: Moving 1354 steps-33
17-03-17 21:20:27.458 -07 000000012 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:20:27.458 -07 000000475 INF: FPGA: Recv ZDACR 29481
17-03-17 21:20:27.468 -07 000000012 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 21:20:27.468 -07 000000012 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 21:20:27.468 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:20:27.518 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 21:20:27.518 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 21:20:27.518 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:27.518 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 21:20:27.518 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 21:20:27.518 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:27.528 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:20:27.528 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 21:20:27.528 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:20:27.528 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 21:20:27.628 -07 000000458 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:20:27.628 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-17 21:20:27.838 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 21:20:27.838 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:20:27.878 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:27.878 -07 000000438 INF: FPGA: Recv YRDPOS 151568
17-03-17 21:20:27.888 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:27.888 -07 000000459 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:27.888 -07 000000459 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 21:20:27.888 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.846 mm, average velocity = 2.181 mm/sec
17-03-17 21:20:28.838 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:28.838 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.020806,
17-03-17 21:20:28.838 -07 000000475 INF: FPGA: Recv YRDPOS 151569
17-03-17 21:20:28.848 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:28.848 -07 000000459 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:28.858 -07 000000459 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:20:28.858 -07 000000459 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:20:28.858 -07 000000459 INF: Y Motor: Moved to 74.0083 after 1431 ms (table move)
17-03-17 21:20:28.868 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134955 mm (DAC = 29481)
17-03-17 21:20:28.878 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:28.878 -07 000000569 INF: FPGA: Recv ZSGSRD 30295
17-03-17 21:20:28.888 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 21:20:28.888 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:28.888 -07 000000480 INF: FPGA: Recv ZSGSRD 30302
17-03-17 21:20:28.898 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:28.918 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:28.918 -07 000000627 INF: FPGA: Recv ZSGSRD 30295
17-03-17 21:20:28.928 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:20:28.928 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:28.928 -07 000000501 INF: FPGA: Recv ZSGSRD 30293
17-03-17 21:20:28.938 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:28.938 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:28.938 -07 000000429 INF: FPGA: Recv ZSGSRD 30297
17-03-17 21:20:28.948 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:28.948 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:28.948 -07 000000415 INF: FPGA: Recv ZSGSRD 30300
17-03-17 21:20:28.958 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:28.958 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:28.958 -07 000000626 INF: FPGA: Recv ZSGSRD 30296
17-03-17 21:20:28.968 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:28.968 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:28.968 -07 000000627 INF: FPGA: Recv ZSGSRD 30300
17-03-17 21:20:28.978 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:28.978 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:28.978 -07 000000438 INF: FPGA: Recv ZSGSRD 30302
17-03-17 21:20:28.988 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:28.988 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:28.988 -07 000000476 INF: FPGA: Recv ZSGSRD 30302
17-03-17 21:20:28.998 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:28.998 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:20:28.998 -07 000000458 INF: FPGA: Recv ZPIEZORD 26334
17-03-17 21:20:29.008 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:29.008 -07 000000576 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.499 V. Piezo Error = -8.7 V.
17-03-17 21:20:29.008 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30298 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30298 (-134.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30293 (-134.1 uncal um), Max = 30302 (-134.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 21:20:29.008 -07 000000576 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30298, posNoise = 4, negNoise = 5
17-03-17 21:20:29.008 -07 000000576 INF: Z Motor: After move to -0.134955, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:20:29.008 -07 000000576 INF: Z Motor: Settle wait time = 1434 ms, measure time = 138 ms (allowed 150 ms), total time = 1572 ms
17-03-17 21:20:29.008 -07 000000576 INF: Z Motor: Waiting extra 12 ms after reading position to reach expected total of 150 ms
17-03-17 21:20:29.028 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1709 ms
17-03-17 21:20:29.028 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:20:29.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:20:29.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:20:29.028 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:20:29.028 -07 000000012 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:20:29.028 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:20:29.028 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:20:29.028 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:20:29.028 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:20:29.038 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:20:29.038 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:20:29.048 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 21:20:29.048 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 21:20:29.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:20:29.098 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:20:29.298 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:20:29.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:20:29.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:20:29.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 21:20:29.328 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:20:29.338 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 21:20:29.338 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 21:20:29.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 21:20:29.408 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:29.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:20:29.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 21:20:29.438 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:20:29.438 -07 000000547 INF: Autofocus start
17-03-17 21:20:29.438 -07 000000547 INF: MeasureProfile start
17-03-17 21:20:29.438 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:20:29.448 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 21:20:29.448 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:20:29.458 -07 000000547 INF: MeasureProfile done
17-03-17 21:20:29.458 -07 000000547 INF: X=16  Z correction [um]=0.0530179
17-03-17 21:20:29.458 -07 000000547 INF: Autofocus finished
17-03-17 21:20:29.648 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:20:29.648 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:20:29.648 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134964131482208. ----------
17-03-17 21:20:29.658 -07 000000610 INF: Cycle	49	Tile	18	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:20:29.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28005, sync = True, waitForSettling = True)
17-03-17 21:20:29.658 -07 000000610 INF: Z Motor: Moving to -0.128199 mm, started at -0.134964 mm, distance = 6.77 um
17-03-17 21:20:29.658 -07 000000610 INF: FPGA: Xmit ZDACW 28005\n [Z Motor]
17-03-17 21:20:29.658 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 21:20:29.668 -07 000000610 INF: FPGA: 'ZDACW 28005' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:20:29.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:20:29.668 -07 000000608 INF: FPGA: Recv ZDACR 28005
17-03-17 21:20:29.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:29.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:20:29.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:29.828 -07 000000480 INF: FPGA: Recv ZSGSRD 29241
17-03-17 21:20:29.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:29.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:29.838 -07 000000576 INF: FPGA: Recv ZSGSRD 29242
17-03-17 21:20:29.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:29.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:29.848 -07 000000424 INF: FPGA: Recv ZSGSRD 29244
17-03-17 21:20:29.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:29.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:29.858 -07 000000458 INF: FPGA: Recv ZSGSRD 29245
17-03-17 21:20:29.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:29.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:29.868 -07 000000431 INF: FPGA: Recv ZSGSRD 29248
17-03-17 21:20:29.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:29.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:29.878 -07 000000012 INF: FPGA: Recv ZSGSRD 29243
17-03-17 21:20:29.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:29.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:29.888 -07 000000429 INF: FPGA: Recv ZSGSRD 29249
17-03-17 21:20:29.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:29.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:29.898 -07 000000501 INF: FPGA: Recv ZSGSRD 29243
17-03-17 21:20:29.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:29.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:29.908 -07 000000627 INF: FPGA: Recv ZSGSRD 29248
17-03-17 21:20:29.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:29.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:29.918 -07 000000512 INF: FPGA: Recv ZSGSRD 29246
17-03-17 21:20:29.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:29.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:20:29.928 -07 000000608 INF: FPGA: Recv ZPIEZORD 24975
17-03-17 21:20:29.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:29.938 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.273 V. Piezo Error = -9.4 V.
17-03-17 21:20:29.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29245 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29244 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29241 (-127.4 uncal um), Max = 29249 (-127.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 21:20:29.938 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29245, posNoise = 4, negNoise = 4
17-03-17 21:20:29.938 -07 000000610 INF: Z Motor: After move to -0.128199, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:20:29.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:20:29.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:20:29.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:20:29.948 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:20:29.948 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:20:29.948 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:20:29.948 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:20:29.948 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:20:29.948 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:20:29.948 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:20:29.948 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:20:29.948 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 21:20:29.948 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:20:29.948 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 21:20:29.948 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:20:29.948 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 21:20:29.948 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:20:29.958 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:20:29.958 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:20:29.958 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:20:29.958 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 21:20:29.958 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28182 150\n [Camera]
17-03-17 21:20:30.158 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:20:30.588 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:20:30.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:20:30.588 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:20:30.598 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:20:30.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:20:30.598 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:20:30.598 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:20:30.598 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) start.
17-03-17 21:20:30.608 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:20:30.608 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 21:20:30.788 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28182 814
17-03-17 21:20:30.928 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:20:30.978 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2315455648, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 21:20:30.978 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 21:20:30.978 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:30.978 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:20:30.978 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:20:30.988 -07 000000476 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 21:20:30.988 -07 000000476 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 21:20:30.988 -07 000000476 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:30.998 -07 000000476 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 21:20:30.998 -07 000000476 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 21:20:31.148 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1172
17-03-17 21:20:31.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1172
17-03-17 21:20:31.148 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:20:31.148 -07 000000458 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1172
17-03-17 21:20:31.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1172
17-03-17 21:20:31.148 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:20:31.148 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:20:31.148 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 21:20:31.158 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:20:31.158 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 21:20:31.328 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:20:31.328 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:20:31.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28182 150' command took 2 ms to send, 1358 ms to get response, and 1370 ms overall
17-03-17 21:20:31.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 21:20:31.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.128199436096934. ------
17-03-17 21:20:31.338 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:20:31.338 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13458 mm
17-03-17 21:20:31.338 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 21:20:31.338 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:20:31.338 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 21:20:31.338 -07 000000415 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 21:20:31.338 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 29399, sync = True, waitForSettling = False)
17-03-17 21:20:31.338 -07 000000569 INF: Z Motor: Moving to -0.134580 mm, started at -0.128199 mm, distance = -6.38 um
17-03-17 21:20:31.348 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:20:31.348 -07 000000569 INF: FPGA: Xmit ZDACW 29399\n [Z Motor]
17-03-17 21:20:31.348 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 21:20:31.358 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 21:20:31.358 -07 000000569 INF: FPGA: 'ZDACW 29399' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:31.368 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:31.368 -07 000000458 INF: FPGA: Recv YRDPOS 151569
17-03-17 21:20:31.378 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:20:31.378 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 21:20:31.378 -07 000000415 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:31.378 -07 000000415 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 21:20:31.378 -07 000000415 INF: Y Motor: Moving 1351 steps-30
17-03-17 21:20:31.378 -07 000000608 INF: FPGA: Recv ZDACR 29399
17-03-17 21:20:31.388 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 21:20:31.388 -07 000000569 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 21:20:31.388 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 21:20:31.538 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 21:20:31.538 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 21:20:31.538 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:31.538 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:20:31.548 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 21:20:31.548 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 21:20:31.548 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:31.548 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 21:20:31.548 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:20:31.548 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 21:20:31.558 -07 000000012 INF: FPGA: Recv FOCMRRFOC
17-03-17 21:20:31.558 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 21:20:31.758 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 21:20:31.758 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 21:20:31.788 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:31.788 -07 000000627 INF: FPGA: Recv YRDPOS 153256
17-03-17 21:20:31.798 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:20:31.798 -07 000000415 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:31.798 -07 000000415 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 21:20:31.798 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.182 mm/sec
17-03-17 21:20:31.868 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 21:20:31.868 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 48. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=738, R2=758, Total=1496. Warn if over 250 bubbles per interval.
17-03-17 21:20:32.748 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 21:20:32.748 -07 000000382 INF: FPGA: Recv YRDPOS 153257
17-03-17 21:20:32.758 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:32.758 -07 000000415 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 21:20:32.768 -07 000000415 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 21:20:32.768 -07 000000415 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 21:20:32.768 -07 000000415 INF: Y Motor: Moved to 74.8325 after 1428 ms (table move)
17-03-17 21:20:32.778 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134580 mm (DAC = 29399)
17-03-17 21:20:32.778 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:32.778 -07 000000459 INF: FPGA: Recv ZSGSRD 30241
17-03-17 21:20:32.788 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 21:20:32.788 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:32.788 -07 000000429 INF: FPGA: Recv ZSGSRD 30233
17-03-17 21:20:32.798 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:32.798 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:32.798 -07 000000608 INF: FPGA: Recv ZSGSRD 30230
17-03-17 21:20:32.808 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:32.808 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:32.808 -07 000000576 INF: FPGA: Recv ZSGSRD 30231
17-03-17 21:20:32.818 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:32.818 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:32.818 -07 000000012 INF: FPGA: Recv ZSGSRD 30246
17-03-17 21:20:32.828 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:32.828 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:32.828 -07 000000627 INF: FPGA: Recv ZSGSRD 30241
17-03-17 21:20:32.838 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:32.838 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:32.838 -07 000000475 INF: FPGA: Recv ZSGSRD 30242
17-03-17 21:20:32.848 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:32.848 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:32.848 -07 000000512 INF: FPGA: Recv ZSGSRD 30246
17-03-17 21:20:32.858 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:32.858 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:32.858 -07 000000569 INF: FPGA: Recv ZSGSRD 30233
17-03-17 21:20:32.868 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:32.868 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:32.868 -07 000000438 INF: FPGA: Recv ZSGSRD 30235
17-03-17 21:20:32.878 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:32.878 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:20:32.878 -07 000000012 INF: FPGA: Recv ZPIEZORD 26279
17-03-17 21:20:32.888 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:32.888 -07 000000547 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.486 V. Piezo Error = -8.7 V.
17-03-17 21:20:32.888 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30238 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30238 (-133.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30230 (-133.7 uncal um), Max = 30246 (-133.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 21:20:32.888 -07 000000547 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30238, posNoise = 8, negNoise = 8
17-03-17 21:20:32.888 -07 000000547 INF: Z Motor: After move to -0.134580, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:20:32.888 -07 000000547 INF: Z Motor: Settle wait time = 1431 ms, measure time = 109 ms (allowed 150 ms), total time = 1540 ms
17-03-17 21:20:32.888 -07 000000547 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 21:20:32.938 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 21:20:32.938 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 21:20:32.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:20:32.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:20:32.938 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:20:32.938 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:20:32.938 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 21:20:32.938 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:20:32.948 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:20:32.948 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 21:20:32.948 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 21:20:32.948 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 21:20:32.958 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 21:20:32.958 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 21:20:32.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 21:20:32.998 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 21:20:33.198 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 21:20:33.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 21:20:33.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 21:20:33.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) start.
17-03-17 21:20:33.238 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 21:20:33.248 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 21:20:33.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 287 ms overall
17-03-17 21:20:33.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2281705520, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 21:20:33.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:33.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 21:20:33.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 21:20:33.348 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 21:20:33.348 -07 000000476 INF: Autofocus start
17-03-17 21:20:33.348 -07 000000476 INF: MeasureProfile start
17-03-17 21:20:33.348 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 21:20:33.358 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 21:20:33.358 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 21:20:33.358 -07 000000476 INF: MeasureProfile done
17-03-17 21:20:33.358 -07 000000476 INF: X=0  Z correction [um]=-0.02394831
17-03-17 21:20:33.358 -07 000000476 INF: Autofocus finished
17-03-17 21:20:33.558 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 21:20:33.558 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 21:20:33.568 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.134578678753703. ----------
17-03-17 21:20:33.568 -07 000000610 INF: Cycle	49	Tile	19	Exposure Settings		A	429	G	206	T	206	C	429
17-03-17 21:20:33.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27906, sync = True, waitForSettling = True)
17-03-17 21:20:33.568 -07 000000610 INF: Z Motor: Moving to -0.127745 mm, started at -0.134579 mm, distance = 6.83 um
17-03-17 21:20:33.568 -07 000000610 INF: FPGA: Xmit ZDACW 27906\n [Z Motor]
17-03-17 21:20:33.568 -07 000000476 INF: FPGA: Recv ZDACW
17-03-17 21:20:33.578 -07 000000610 INF: FPGA: 'ZDACW 27906' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 21:20:33.578 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 21:20:33.578 -07 000000480 INF: FPGA: Recv ZDACR 27906
17-03-17 21:20:33.588 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:33.588 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 21:20:33.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:33.738 -07 000000424 INF: FPGA: Recv ZSGSRD 29175
17-03-17 21:20:33.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 21:20:33.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:33.748 -07 000000431 INF: FPGA: Recv ZSGSRD 29174
17-03-17 21:20:33.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:33.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:33.758 -07 000000415 INF: FPGA: Recv ZSGSRD 29173
17-03-17 21:20:33.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:33.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:33.768 -07 000000608 INF: FPGA: Recv ZSGSRD 29176
17-03-17 21:20:33.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:33.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:33.778 -07 000000438 INF: FPGA: Recv ZSGSRD 29177
17-03-17 21:20:33.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:33.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:33.788 -07 000000429 INF: FPGA: Recv ZSGSRD 29182
17-03-17 21:20:33.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:33.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:33.798 -07 000000458 INF: FPGA: Recv ZSGSRD 29173
17-03-17 21:20:33.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:33.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:33.808 -07 000000382 INF: FPGA: Recv ZSGSRD 29168
17-03-17 21:20:33.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:33.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:33.818 -07 000000475 INF: FPGA: Recv ZSGSRD 29172
17-03-17 21:20:33.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:33.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 21:20:33.828 -07 000000547 INF: FPGA: Recv ZSGSRD 29177
17-03-17 21:20:33.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:33.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 21:20:33.838 -07 000000424 INF: FPGA: Recv ZPIEZORD 24894
17-03-17 21:20:33.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 21:20:33.848 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.258 V. Piezo Error = -9.4 V.
17-03-17 21:20:33.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29175 (-127.0 uncal um), Error = 0.8 uncal um, Median = 29174 (-127.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29168 (-126.9 uncal um), Max = 29182 (-127.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 21:20:33.848 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29175, posNoise = 7, negNoise = 7
17-03-17 21:20:33.848 -07 000000610 INF: Z Motor: After move to -0.127745, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 21:20:33.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 21:20:33.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 21:20:33.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 21:20:33.848 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 21:20:33.848 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 21:20:33.848 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 21:20:33.848 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 21:20:33.848 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 21:20:33.848 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 21:20:33.848 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 21:20:33.848 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 21:20:33.848 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 21:20:33.848 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 21:20:33.858 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 21:20:33.858 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 21:20:33.858 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 21:20:33.858 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 21:20:33.858 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 21:20:33.868 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:20:33.868 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 21:20:33.868 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 21:20:33.868 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 429 429 206 206 28083 150\n [Camera]
17-03-17 21:20:34.068 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 21:20:34.238 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.018051,
17-03-17 21:20:34.498 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 621
17-03-17 21:20:34.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 621
17-03-17 21:20:34.498 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:20:34.498 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:20:34.498 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 21:20:34.498 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 621
17-03-17 21:20:34.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 621
17-03-17 21:20:34.498 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:20:34.498 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:20:34.498 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 21:20:34.688 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28083 814
17-03-17 21:20:34.838 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP turning grn on 964
17-03-17 21:20:34.878 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 21:20:34.878 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 21:20:34.878 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:34.878 -07 000000012 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 21:20:34.878 -07 000000012 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 21:20:34.878 -07 000000012 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:34.888 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:20:34.888 -07 000000012 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 21:20:34.888 -07 000000012 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 21:20:34.888 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 21:20:35.048 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1170
17-03-17 21:20:35.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1170
17-03-17 21:20:35.048 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 21:20:35.048 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 21:20:35.048 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 21:20:35.048 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1170
17-03-17 21:20:35.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1170
17-03-17 21:20:35.048 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 21:20:35.048 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 21:20:35.048 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 21:20:35.238 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1363
17-03-17 21:20:35.238 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 21:20:35.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 429 429 206 206 28083 150' command took 2 ms to send, 1362 ms to get response, and 1370 ms overall
17-03-17 21:20:35.458 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 408 ms.
17-03-17 21:20:35.458 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 21:20:35.458 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:35.458 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 408 ms.
17-03-17 21:20:35.458 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 21:20:35.458 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 21:20:35.458 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 21:20:35.458 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 21:20:35.458 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 21:20:35.458 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 21:20:35.468 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 21:20:35.508 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 21:20:35.508 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 21:20:35.548 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 21:20:35.558 -07 000000610 INF: Enabling Skipping AutoFocus in the next 3 cycles.
17-03-17 21:20:35.558 -07 000000610 INF: Imaging Cycle 49: ScanTilesCommand Cycle 49 time end. Duration was 159691 ms.
17-03-17 21:20:35.558 -07 000000610 INF: =================== Cycle #49 ===================
17-03-17 21:20:35.558 -07 000000610 INF: ===================  ===================
17-03-17 21:20:35.558 -07 000000438 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 21:20:35.568 -07 000000382 INF: FPGA: Recv EXLED1ADCR 25
17-03-17 21:20:35.568 -07 000000438 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 21:20:35.568 -07 000000438 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-17 21:20:35.568 -07 000000438 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 49, FrontChillerTemperature: 4.018051, FrontChillerHeatSinkTemperature: 0.116952, AmbientTemperature: 19.03812, FlowCellCompartmentTemperature: 21.98965, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.80749, GreenLEDSensorTemperature: 26.49008, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-17 21:20:35.608 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.