17-03-17 17:39:51.288 -07 000000610 INF: =================== Cycle #4 ===================
17-03-17 17:39:51.298 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 17:39:51.298 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 17:39:51.298 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:39:51.298 -07 000000442 INF: FPGA: Recv YRDPOS 153257
17-03-17 17:39:51.308 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:39:51.308 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:39:51.308 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 17:39:51.308 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 17:39:51.308 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 17:39:51.418 -07 000000442 INF: FPGA: Recv YMVTO 154377 871
17-03-17 17:39:51.418 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 107 ms to get response, and 116 ms overall
17-03-17 17:39:51.418 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 17:39:51.418 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 17:39:51.418 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 17:39:51.518 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:39:51.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=32, R2=39, Total=71. Warn if over 250 bubbles per interval.
17-03-17 17:39:51.968 -07 000000442 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 4.020806,
17-03-17 17:39:54.418 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:39:54.418 -07 000000501 INF: FPGA: Recv YRDPOS 154380
17-03-17 17:39:54.428 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:39:54.428 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:39:54.438 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:39:54.438 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 17:39:54.438 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3144 ms
17-03-17 17:39:54.448 -07 000000610 INF: =================== Cycle #4, Flow Cell Temp 60° ===================
17-03-17 17:39:54.448 -07 000000610 INF: =================== Cycle #4, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 17:39:54.448 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 17:39:54.448 -07 000000618 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:39:54.458 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:39:54.458 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:39:54.458 -07 000000501 INF: FPGA: Recv TEC2EN 
17-03-17 17:39:54.468 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:39:54.468 -07 000000610 INF: =================== Cycle #4, Flow Cell Temp 60° ===================
17-03-17 17:39:54.468 -07 000000610 INF: =================== Cycle #4 ===================
17-03-17 17:39:54.468 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:39:54.468 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:39:54.498 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 17:39:54.498 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 17:39:54.498 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 17:39:54.798 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:39:54.818 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 17:39:54.818 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 17:39:54.868 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:39:54.888 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:39:54.888 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:39:54.988 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3) ===================
17-03-17 17:39:54.988 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 17:39:54.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:39:55.018 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 17:39:55.018 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 17:39:55.018 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:39:55.148 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 17:39:55.188 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:39:56.518 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-17 17:39:56.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=34, R2=39, Total=73. Warn if over 250 bubbles per interval.
17-03-17 17:39:57.328 -07 000000442 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.975845,
17-03-17 17:39:58.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:39:58.348 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:39:58.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:39:58.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:39:59.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:39:59.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:39:59.248 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 17:39:59.248 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3) ===================
17-03-17 17:39:59.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:39:59.408 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:39:59.408 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:39:59.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:39:59.568 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:39:59.568 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:39:59.568 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:39:59.698 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:39:59.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:40:00.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:40:00.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:40:00.188 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:40:00.188 -07 000000610 INF: =================== Cycle #4 ===================
17-03-17 17:40:01.408 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:40:01.408 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 17:40:01.408 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:40:01.428 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:40:01.428 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 17:40:01.428 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 17:40:01.518 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 17:40:01.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=34, R2=41, Total=75. Warn if over 250 bubbles per interval.
17-03-17 17:40:01.568 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:40:01.588 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 17:40:01.588 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 17:40:01.638 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:40:01.658 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 17:40:01.658 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:40:01.758 -07 000000610 INF: =================== Cycle #4, Pumping Reagent CMS (4) ===================
17-03-17 17:40:01.758 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 17:40:01.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:40:01.788 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:40:01.788 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:40:01.788 -07 000000610 INF: =================== Cycle #4, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 17:40:01.918 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 17:40:01.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:40:02.698 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.974486,
17-03-17 17:40:03.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:40:03.428 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:40:03.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:40:03.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:40:03.878 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 17:40:03.878 -07 000000610 INF: =================== Cycle #4, Pumping Reagent CMS (4) ===================
17-03-17 17:40:04.008 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:40:04.038 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:40:04.038 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:40:04.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:40:04.198 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:40:04.198 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:40:04.198 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:40:04.328 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:40:04.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:40:04.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:40:04.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:40:04.818 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:40:04.818 -07 000000610 INF: =================== Cycle #4 ===================
17-03-17 17:40:06.038 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:40:06.038 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:40:06.038 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:40:06.058 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 17:40:06.058 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 17:40:06.058 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 17:40:06.208 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:40:06.228 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 17:40:06.228 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 17:40:06.278 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:40:06.298 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:40:06.298 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:40:06.398 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3) ===================
17-03-17 17:40:06.398 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 17:40:06.398 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:40:06.428 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:40:06.428 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:40:06.428 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:40:06.518 -07 000000442 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 17:40:06.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:40:06.558 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 17:40:06.598 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:40:07.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:40:07.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:40:07.498 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 17:40:07.498 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3) ===================
17-03-17 17:40:07.628 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:40:07.658 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:40:07.658 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:40:07.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:40:07.818 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:40:07.818 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:40:07.818 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:40:07.948 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:40:07.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:40:08.068 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.983999,
17-03-17 17:40:08.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:40:08.438 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:40:08.438 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:40:08.438 -07 000000610 INF: =================== Cycle #4 ===================
17-03-17 17:40:08.438 -07 000000486 INF: WaitCommand(10000) start
17-03-17 17:40:08.438 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:40:08.438 -07 000000608 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 17:40:09.658 -07 000000608 INF: AsyncDelayTimer waited 1215ms
17-03-17 17:40:09.658 -07 000000608 INF: LanePump: Xmit /1?\r
17-03-17 17:40:09.688 -07 000000608 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:40:09.688 -07 000000608 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:40:09.818 -07 000000608 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 17:40:09.858 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:40:11.388 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-17 17:40:11.418 -07 000000608 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:40:11.518 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:40:11.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:40:11.838 -07 000000608 INF: LanePump: Xmit /1Q\r
17-03-17 17:40:11.868 -07 000000608 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:40:11.868 -07 000000608 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 17:40:11.868 -07 000000608 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:40:11.868 -07 000000608 INF: ===================  ===================
17-03-17 17:40:13.438 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 4.016692,
17-03-17 17:40:16.518 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:40:16.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:40:18.448 -07 000000486 INF: WaitCommand(10000) end
17-03-17 17:40:18.448 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3) ===================
17-03-17 17:40:18.448 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 17:40:18.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:40:18.488 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 17:40:18.488 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 17:40:18.488 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:40:18.618 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 17:40:18.658 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:40:18.808 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 4.016692,
17-03-17 17:40:21.518 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:40:21.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:40:24.178 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 4.023489,
17-03-17 17:40:24.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:40:24.818 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:40:25.238 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:40:25.268 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:40:25.688 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:40:25.718 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:40:26.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:40:26.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:40:26.518 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:40:26.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:40:26.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:40:26.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:40:26.618 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 17:40:26.618 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3) ===================
17-03-17 17:40:26.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:40:26.778 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:40:26.778 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:40:26.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:40:26.938 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:40:26.938 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:40:26.938 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:40:27.068 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:40:27.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:40:27.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:40:27.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:40:27.558 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:40:27.558 -07 000000610 INF: =================== Cycle #4 ===================
17-03-17 17:40:28.778 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 17:40:28.778 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 17:40:28.778 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:40:28.798 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:40:28.798 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 17:40:28.798 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 17:40:29.008 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:40:29.028 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 17:40:29.028 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 17:40:29.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:40:29.098 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 17:40:29.098 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:40:29.198 -07 000000610 INF: =================== Cycle #4, Pumping Reagent IMT (1) ===================
17-03-17 17:40:29.198 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 17:40:29.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:40:29.228 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:40:29.228 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:40:29.228 -07 000000610 INF: =================== Cycle #4, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 17:40:29.358 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 17:40:29.398 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:40:29.548 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 4.012614,
17-03-17 17:40:30.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:40:30.868 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:40:31.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:40:31.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:40:31.318 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 17:40:31.318 -07 000000610 INF: =================== Cycle #4, Pumping Reagent IMT (1) ===================
17-03-17 17:40:31.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:40:31.478 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 17:40:31.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 17:40:31.518 -07 000000442 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:40:31.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:40:31.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:40:31.638 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 17:40:31.638 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 17:40:31.638 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:40:31.768 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:40:31.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:40:32.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:40:32.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:40:32.258 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:40:32.258 -07 000000610 INF: =================== Cycle #4 ===================
17-03-17 17:40:33.478 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 17:40:33.478 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:40:33.478 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:40:33.498 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 17:40:33.498 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 17:40:33.498 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 17:40:33.728 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:40:33.748 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 17:40:33.748 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 17:40:33.798 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:40:33.818 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:40:33.818 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:40:33.918 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3) ===================
17-03-17 17:40:33.918 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 17:40:33.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:40:33.948 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 17:40:33.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 17:40:33.948 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:40:34.078 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 17:40:34.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:40:34.918 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 4.016692,
17-03-17 17:40:34.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:40:35.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:40:35.018 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 17:40:35.018 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3) ===================
17-03-17 17:40:35.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:40:35.178 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 17:40:35.178 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 17:40:35.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:40:35.338 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 17:40:35.338 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 17:40:35.338 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:40:35.468 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:40:35.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:40:35.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:40:35.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:40:35.958 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:40:35.958 -07 000000610 INF: =================== Cycle #4 ===================
17-03-17 17:40:35.958 -07 000000610 INF: =================== Cycle #4, Flow Cell Temp 65° ===================
17-03-17 17:40:35.958 -07 000000610 INF: =================== Cycle #4, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 17:40:35.958 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 17:40:35.958 -07 000000442 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:40:35.968 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:40:35.968 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:40:35.968 -07 000000486 INF: FPGA: Recv TEC2EN 
17-03-17 17:40:35.978 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:40:35.978 -07 000000610 INF: =================== Cycle #4, Flow Cell Temp 65° ===================
17-03-17 17:40:35.978 -07 000000610 INF: =================== Cycle #4 ===================
17-03-17 17:40:35.978 -07 000000610 INF: WaitCommand(30000) start
17-03-17 17:40:36.518 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:40:36.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:40:40.288 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.997626,
17-03-17 17:40:41.518 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:40:41.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:40:45.668 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 4.000345,
17-03-17 17:40:46.518 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:40:46.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:40:51.028 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.994908,
17-03-17 17:40:51.528 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:40:51.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:40:56.398 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.96762,
17-03-17 17:40:56.518 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:40:56.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:41:01.518 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:41:01.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:41:01.768 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.997626,
17-03-17 17:41:05.988 -07 000000610 INF: WaitCommand(30000) end
17-03-17 17:41:05.988 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3) ===================
17-03-17 17:41:05.988 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 17:41:06.088 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:41:06.118 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 17:41:06.118 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 17:41:06.118 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:41:06.248 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 17:41:06.288 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:41:06.518 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:41:06.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:41:06.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:41:06.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:41:06.858 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 17:41:06.858 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3) ===================
17-03-17 17:41:06.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:41:07.018 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 17:41:07.018 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 17:41:07.138 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.997626,
17-03-17 17:41:07.148 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:41:07.178 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 17:41:07.178 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 17:41:07.178 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:41:07.308 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:41:07.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:41:07.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:41:07.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:41:07.798 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:41:07.798 -07 000000610 INF: =================== Cycle #4 ===================
17-03-17 17:41:07.798 -07 000000501 INF: WaitCommand(30000) start
17-03-17 17:41:07.798 -07 000000433 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:41:07.798 -07 000000433 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 17:41:09.018 -07 000000433 INF: AsyncDelayTimer waited 1216ms
17-03-17 17:41:09.018 -07 000000433 INF: LanePump: Xmit /1?\r
17-03-17 17:41:09.048 -07 000000433 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 17:41:09.048 -07 000000433 INF: LanePump: Current Position of Pump is: 1920
17-03-17 17:41:09.178 -07 000000433 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 17:41:09.218 -07 000000433 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:41:11.518 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:41:11.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:41:11.558 -07 000000433 INF: LanePump: Xmit /1Q\r
17-03-17 17:41:11.588 -07 000000433 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:41:12.008 -07 000000433 INF: LanePump: Xmit /1Q\r
17-03-17 17:41:12.038 -07 000000433 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:41:12.038 -07 000000433 INF: LanePump: Waited 2820 ms for pump motion to complete
17-03-17 17:41:12.038 -07 000000433 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:41:12.038 -07 000000433 INF: ===================  ===================
17-03-17 17:41:12.508 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.966297,
17-03-17 17:41:16.518 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:41:16.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:41:17.878 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.986717,
17-03-17 17:41:21.518 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:41:21.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:41:23.248 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.977204,
17-03-17 17:41:26.518 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:41:26.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:41:28.618 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.988112,
17-03-17 17:41:31.518 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:41:31.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:41:33.988 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 4.004458,
17-03-17 17:41:36.518 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:41:36.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:41:37.808 -07 000000501 INF: WaitCommand(30000) end
17-03-17 17:41:37.808 -07 000000610 INF: =================== Cycle #4, Flow Cell Temp 22° ===================
17-03-17 17:41:37.808 -07 000000610 INF: =================== Cycle #4, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 17:41:37.808 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 17:41:37.818 -07 000000576 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:41:37.818 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:41:37.818 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:41:37.818 -07 000000501 INF: FPGA: Recv TEC2EN 
17-03-17 17:41:37.828 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:41:37.828 -07 000000610 INF: =================== Cycle #4, Flow Cell Temp 22° ===================
17-03-17 17:41:37.828 -07 000000610 INF: =================== Cycle #4 ===================
17-03-17 17:41:37.828 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3) ===================
17-03-17 17:41:37.828 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 17:41:37.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:41:37.858 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 17:41:37.858 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 17:41:37.858 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:41:37.988 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 17:41:38.028 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:41:39.358 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.989471,
17-03-17 17:41:41.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:41:41.188 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:41:41.518 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:41:41.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=35, R2=42, Total=77. Warn if over 250 bubbles per interval.
17-03-17 17:41:41.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:41:41.638 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:41:42.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:41:42.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:41:42.088 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 17:41:42.088 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3) ===================
17-03-17 17:41:42.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:41:42.248 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:41:42.248 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:41:42.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:41:42.408 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:41:42.408 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:41:42.408 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:41:42.538 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:41:42.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:41:42.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:41:43.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:41:43.028 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:41:43.028 -07 000000610 INF: =================== Cycle #4 ===================
17-03-17 17:41:44.248 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:41:44.248 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 17:41:44.248 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:41:44.268 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:41:44.268 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 17:41:44.268 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 17:41:44.418 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:41:44.438 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 17:41:44.438 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 17:41:44.488 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:41:44.508 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 17:41:44.508 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:41:44.608 -07 000000610 INF: =================== Cycle #4, Pumping Reagent USM (2) ===================
17-03-17 17:41:44.608 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 17:41:44.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:41:44.638 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:41:44.638 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:41:44.638 -07 000000610 INF: =================== Cycle #4, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 17:41:44.728 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.966297,
17-03-17 17:41:44.768 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 17:41:44.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:41:46.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:41:46.278 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:41:46.518 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-17 17:41:46.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=42, Total=79. Warn if over 250 bubbles per interval.
17-03-17 17:41:46.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:41:46.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:41:46.728 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 17:41:46.728 -07 000000610 INF: =================== Cycle #4, Pumping Reagent USM (2) ===================
17-03-17 17:41:46.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:41:46.888 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:41:46.888 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:41:47.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:41:47.048 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:41:47.048 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:41:47.048 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:41:47.178 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:41:47.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:41:47.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:41:47.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:41:47.668 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:41:47.668 -07 000000610 INF: =================== Cycle #4 ===================
17-03-17 17:41:48.888 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 17:41:48.888 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:41:48.888 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:41:48.908 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 17:41:48.908 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 17:41:48.908 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 17:41:49.058 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:41:49.078 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 17:41:49.078 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 17:41:49.128 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:41:49.148 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:41:49.148 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:41:49.248 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3) ===================
17-03-17 17:41:49.248 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 17:41:49.248 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:41:49.278 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:41:49.278 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:41:49.278 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:41:49.408 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 17:41:49.448 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:41:50.098 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.970374,
17-03-17 17:41:50.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:41:50.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:41:50.348 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 17:41:50.348 -07 000000610 INF: =================== Cycle #4, Pumping Reagent PR2 (3) ===================
17-03-17 17:41:50.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:41:51.268 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:41:51.268 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:41:51.398 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:41:51.428 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:41:51.428 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:41:51.428 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:41:51.518 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 0
17-03-17 17:41:51.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=2, Total=2. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:41:51.558 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:41:51.588 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:41:52.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:41:52.048 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:41:52.048 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:41:52.048 -07 000000610 INF: =================== Cycle #4 ===================
17-03-17 17:41:52.048 -07 000000433 INF: WaitCommand(10000) start
17-03-17 17:41:52.048 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:41:52.048 -07 000000438 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 17:41:53.268 -07 000000438 INF: AsyncDelayTimer waited 1215ms
17-03-17 17:41:53.268 -07 000000438 INF: LanePump: Xmit /1?\r
17-03-17 17:41:53.298 -07 000000438 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:41:53.298 -07 000000438 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:41:53.428 -07 000000438 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 17:41:53.468 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:41:54.998 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-17 17:41:55.028 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:41:55.448 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-17 17:41:55.468 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.985358,
17-03-17 17:41:55.478 -07 000000438 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:41:55.478 -07 000000438 INF: LanePump: Waited 2010 ms for pump motion to complete
17-03-17 17:41:55.478 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:41:55.478 -07 000000438 INF: ===================  ===================
17-03-17 17:41:56.518 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:41:56.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:42:00.828 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 4.011254,
17-03-17 17:42:01.518 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:42:01.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:42:02.058 -07 000000433 INF: WaitCommand(10000) end
17-03-17 17:42:02.058 -07 000000610 INF: =================== Cycle #4, Imaging ===================
17-03-17 17:42:02.058 -07 000000610 INF: Imaging Cycle 4: ScanTilesCommand Cycle 4 time start.
17-03-17 17:42:02.068 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 17:42:02.068 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:42:02.088 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:42:02.088 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 17:42:02.088 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 17:42:02.388 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:42:02.408 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 17:42:02.408 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 17:42:02.458 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:42:02.478 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 17:42:02.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:02.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:02.478 -07 000000618 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 17:42:02.478 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:02.478 -07 000000618 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 17:42:02.478 -07 000000486 INF: FPGA: Recv EXLED1ON 
17-03-17 17:42:02.488 -07 000000618 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:42:02.488 -07 000000618 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 17:42:02.488 -07 000000438 INF: FPGA: Recv EXLED1ADCR 23204
17-03-17 17:42:02.498 -07 000000618 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:02.498 -07 000000618 INF: RedLED: Using Red data: Photodiode ADC 23204 --> 7.5 mW (old method), or 205.6 mW (new method). Difference = 198.2 mW
17-03-17 17:42:02.498 -07 000000618 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 17:42:02.498 -07 000000433 INF: FPGA: Recv EXLED1OFF 
17-03-17 17:42:02.508 -07 000000618 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:02.508 -07 000000618 INF: RedLED: LED was on for 20 ms
17-03-17 17:42:02.508 -07 000000618 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 17:42:02.508 -07 000000618 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 17:42:02.508 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:02.508 -07 000000618 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 17:42:02.508 -07 000000486 INF: FPGA: Recv EXLED2ON 
17-03-17 17:42:02.518 -07 000000618 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:42:02.518 -07 000000618 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 17:42:02.518 -07 000000438 INF: FPGA: Recv EXLED1ADCR 2102
17-03-17 17:42:02.528 -07 000000618 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:02.528 -07 000000618 INF: GreenLED: Using Green data: Photodiode ADC 2102 --> 0.9 mW (old method), or 182.6 mW (new method). Difference = 181.7 mW
17-03-17 17:42:02.528 -07 000000618 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 17:42:02.528 -07 000000608 INF: FPGA: Recv EXLED2OFF 
17-03-17 17:42:02.538 -07 000000618 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:02.538 -07 000000618 INF: GreenLED: LED was on for 20 ms
17-03-17 17:42:02.538 -07 000000618 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 17:42:02.538 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 17:42:02.538 -07 000000433 INF: FPGA: Recv EMCUR 
17-03-17 17:42:02.548 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:02.548 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 17:42:03.048 -07 000000501 INF: FPGA: Recv EMOUT
17-03-17 17:42:03.048 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 17:42:03.048 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 17:42:03.048 -07 000000576 INF: FPGA: Recv EMCUR 
17-03-17 17:42:03.058 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:03.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:42:03.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.126702594667904. ------
17-03-17 17:42:03.058 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:03.058 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17863 mm
17-03-17 17:42:03.058 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:42:03.068 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 17:42:03.068 -07 000000486 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 17:42:03.068 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:03.068 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:42:03.068 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:03.068 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 39023, sync = True, waitForSettling = False)
17-03-17 17:42:03.068 -07 000000608 INF: Z Motor: Moving to -0.178636 mm, started at -0.126703 mm, distance = -51.93 um
17-03-17 17:42:03.068 -07 000000438 INF: FPGA: Recv YRDPOS 154381
17-03-17 17:42:03.078 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:42:03.078 -07 000000486 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:03.078 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:42:03.078 -07 000000486 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 17:42:03.078 -07 000000486 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 17:42:03.088 -07 000000608 INF: FPGA: Xmit ZDACW 39023\n [Z Motor]
17-03-17 17:42:03.088 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:42:03.098 -07 000000608 INF: FPGA: 'ZDACW 39023' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 17:42:03.098 -07 000000486 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 17:42:03.108 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:03.108 -07 000000569 INF: FPGA: Recv ZDACR 39023
17-03-17 17:42:03.118 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:42:03.118 -07 000000608 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 17:42:03.278 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:42:03.278 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 17:42:04.778 -07 000000459 INF: FPGA: Recv YMVTO 122702 24775
17-03-17 17:42:04.778 -07 000000486 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1703 ms overall
17-03-17 17:42:04.778 -07 000000486 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 17:42:04.778 -07 000000486 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24750 steps, but required 24775 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 17:42:04.778 -07 000000486 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1703 ms, distance = 15.468 mm, average velocity = 9.083 mm/sec
17-03-17 17:42:06.188 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 4.003063,
17-03-17 17:42:06.758 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:42:06.758 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:42:07.628 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:07.628 -07 000000433 INF: FPGA: Recv YRDPOS 122699
17-03-17 17:42:07.638 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:07.638 -07 000000486 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:07.658 -07 000000486 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:42:07.658 -07 000000486 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -3 counts (-0.001 mm)
17-03-17 17:42:07.658 -07 000000486 INF: Y Motor: Moved to 59.9116 after 4589 ms
17-03-17 17:42:07.658 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178636 mm (DAC = 39023)
17-03-17 17:42:07.658 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:07.658 -07 000000433 INF: FPGA: Recv ZSGSRD 37103
17-03-17 17:42:07.668 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:42:07.668 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:07.668 -07 000000576 INF: FPGA: Recv ZSGSRD 37102
17-03-17 17:42:07.678 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:07.678 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:07.678 -07 000000433 INF: FPGA: Recv ZSGSRD 37100
17-03-17 17:42:07.688 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:07.688 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:07.688 -07 000000433 INF: FPGA: Recv ZSGSRD 37094
17-03-17 17:42:07.698 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:07.698 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:07.698 -07 000000501 INF: FPGA: Recv ZSGSRD 37096
17-03-17 17:42:07.708 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:07.708 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:07.708 -07 000000576 INF: FPGA: Recv ZSGSRD 37099
17-03-17 17:42:07.718 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:07.718 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:07.718 -07 000000501 INF: FPGA: Recv ZSGSRD 37098
17-03-17 17:42:07.728 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:07.728 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:07.728 -07 000000433 INF: FPGA: Recv ZSGSRD 37096
17-03-17 17:42:07.738 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:07.738 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:07.738 -07 000000486 INF: FPGA: Recv ZSGSRD 37098
17-03-17 17:42:07.748 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:07.748 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:07.748 -07 000000438 INF: FPGA: Recv ZSGSRD 37095
17-03-17 17:42:07.758 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:07.758 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:07.758 -07 000000501 INF: FPGA: Recv ZPIEZORD 33129
17-03-17 17:42:07.768 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:07.768 -07 000000618 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.955 V. Piezo Error = -8.8 V.
17-03-17 17:42:07.768 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.6 um, Read 10 ADC samples: Avg = 37098 (-177.8 uncal um), Error = 0.9 uncal um, Median = 37098 (-177.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 37094 (-177.7 uncal um), Max = 37103 (-177.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:42:07.768 -07 000000618 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37098, posNoise = 5, negNoise = 4
17-03-17 17:42:07.768 -07 000000618 INF: Z Motor: After move to -0.178636, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:07.768 -07 000000618 INF: Z Motor: Settle wait time = 4591 ms, measure time = 107 ms (allowed 150 ms), total time = 4698 ms
17-03-17 17:42:07.768 -07 000000618 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:42:07.818 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4751 ms
17-03-17 17:42:07.818 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:42:07.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:07.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:07.818 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:07.818 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:42:07.818 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:07.818 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:07.818 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:42:07.818 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 17:42:07.848 -07 000000569 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 24 ms.
17-03-17 17:42:07.848 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:42:07.848 -07 000000569 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 17:42:07.848 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:42:07.868 -07 000000569 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:42:07.868 -07 000000569 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 17:42:07.868 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:42:07.918 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 17:42:08.108 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 17:42:08.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 17:42:08.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:42:08.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:42:08.148 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:42:08.148 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 17:42:08.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 17:42:08.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:42:08.248 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:08.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:42:08.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 17:42:08.348 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:08.348 -07 000000569 INF: Image SNR check: start
17-03-17 17:42:08.348 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:08.358 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:08.358 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:42:08.358 -07 000000569 INF: Image SNR check: pass  [peak (Max-Min)=73.94]
17-03-17 17:42:08.358 -07 000000569 INF: Autofocus start
17-03-17 17:42:08.358 -07 000000569 INF: MeasureProfile start
17-03-17 17:42:08.368 -07 000000569 INF: MeasureProfile done
17-03-17 17:42:08.368 -07 000000569 INF: X=32  Z correction [um]=0.09220707
17-03-17 17:42:08.368 -07 000000569 INF: Autofocus finished
17-03-17 17:42:08.558 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:42:08.558 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:42:08.558 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.178648774046183. ----------
17-03-17 17:42:08.558 -07 000000610 INF: Cycle	4	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:42:08.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37556, sync = True, waitForSettling = True)
17-03-17 17:42:08.568 -07 000000610 INF: Z Motor: Moving to -0.171920 mm, started at -0.178649 mm, distance = 6.73 um
17-03-17 17:42:08.568 -07 000000610 INF: FPGA: Xmit ZDACW 37556\n [Z Motor]
17-03-17 17:42:08.568 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 17:42:08.578 -07 000000610 INF: FPGA: 'ZDACW 37556' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:08.578 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:08.578 -07 000000569 INF: FPGA: Recv ZDACR 37556
17-03-17 17:42:08.588 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:08.588 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:42:08.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:08.738 -07 000000501 INF: FPGA: Recv ZSGSRD 36057
17-03-17 17:42:08.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:08.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:08.748 -07 000000433 INF: FPGA: Recv ZSGSRD 36049
17-03-17 17:42:08.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:08.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:08.758 -07 000000569 INF: FPGA: Recv ZSGSRD 36052
17-03-17 17:42:08.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:08.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:08.768 -07 000000433 INF: FPGA: Recv ZSGSRD 36051
17-03-17 17:42:08.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:08.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:08.778 -07 000000576 INF: FPGA: Recv ZSGSRD 36050
17-03-17 17:42:08.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:08.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:08.788 -07 000000433 INF: FPGA: Recv ZSGSRD 36055
17-03-17 17:42:08.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:08.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:08.798 -07 000000569 INF: FPGA: Recv ZSGSRD 36054
17-03-17 17:42:08.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:08.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:08.808 -07 000000433 INF: FPGA: Recv ZSGSRD 36053
17-03-17 17:42:08.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:08.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:08.818 -07 000000569 INF: FPGA: Recv ZSGSRD 36054
17-03-17 17:42:08.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:08.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:08.828 -07 000000433 INF: FPGA: Recv ZSGSRD 36047
17-03-17 17:42:08.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:08.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:08.838 -07 000000576 INF: FPGA: Recv ZPIEZORD 31787
17-03-17 17:42:08.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:08.848 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.731 V. Piezo Error = -9.4 V.
17-03-17 17:42:08.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36052 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36052 (-171.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36047 (-171.0 uncal um), Max = 36057 (-171.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:42:08.848 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36052, posNoise = 5, negNoise = 5
17-03-17 17:42:08.848 -07 000000610 INF: Z Motor: After move to -0.171920, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:08.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:42:08.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:08.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:08.848 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:08.848 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:08.848 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:42:08.848 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:08.848 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:42:08.848 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:42:08.848 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:42:08.848 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:42:08.848 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:42:08.848 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 17:42:08.848 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:42:08.848 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:42:08.868 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 17:42:08.868 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 17:42:08.868 -07 000000576 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 17:42:08.868 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:42:08.878 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:42:08.878 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:42:08.888 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 17:42:08.888 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 17:42:08.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37732 150\n [Camera]
17-03-17 17:42:09.088 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:42:09.478 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:42:09.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:42:09.478 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:09.488 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:42:09.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:42:09.488 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:09.488 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:09.488 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) start.
17-03-17 17:42:09.498 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:09.498 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:42:09.678 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37732 775
17-03-17 17:42:09.828 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:42:09.888 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1051332656, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 17:42:09.888 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:42:09.888 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:09.888 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:42:09.888 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 17:42:09.898 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 17:42:09.898 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:42:09.898 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:09.898 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:42:09.908 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 17:42:10.018 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 17:42:10.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 17:42:10.018 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:10.018 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 17:42:10.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 17:42:10.018 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:10.138 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:10.138 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 17:42:10.148 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:10.148 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) start.
17-03-17 17:42:10.208 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:42:10.208 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:42:10.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37732 150' command took 2 ms to send, 1301 ms to get response, and 1312 ms overall
17-03-17 17:42:10.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:42:10.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91162109375, Z-Position -0.171929048145901. ------
17-03-17 17:42:10.208 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:10.208 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17822 mm
17-03-17 17:42:10.208 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:42:10.208 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 17:42:10.208 -07 000000486 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 17:42:10.208 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:10.218 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:42:10.218 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:10.218 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38931, sync = True, waitForSettling = False)
17-03-17 17:42:10.218 -07 000000576 INF: Z Motor: Moving to -0.178215 mm, started at -0.171929 mm, distance = -6.29 um
17-03-17 17:42:10.218 -07 000000569 INF: FPGA: Recv YRDPOS 122699
17-03-17 17:42:10.228 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:10.228 -07 000000576 INF: FPGA: Xmit ZDACW 38931\n [Z Motor]
17-03-17 17:42:10.228 -07 000000486 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:10.228 -07 000000486 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:42:10.228 -07 000000486 INF: Y Motor: Moving 1330 steps1
17-03-17 17:42:10.228 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:42:10.238 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:42:10.238 -07 000000576 INF: FPGA: 'ZDACW 38931' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:42:10.248 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:42:10.258 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:10.258 -07 000000438 INF: FPGA: Recv ZDACR 38931
17-03-17 17:42:10.268 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:42:10.268 -07 000000576 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 17:42:10.438 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:42:10.438 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:42:10.528 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:42:10.528 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:42:10.528 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:10.528 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:42:10.538 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 17:42:10.538 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 17:42:10.538 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:10.538 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 517 ms.
17-03-17 17:42:10.538 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:42:10.538 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 17:42:10.618 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 17:42:10.618 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:42:10.648 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:10.648 -07 000000438 INF: FPGA: Recv YRDPOS 124382
17-03-17 17:42:10.658 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:10.658 -07 000000486 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:10.658 -07 000000486 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 17:42:10.658 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.093 mm/sec
17-03-17 17:42:11.518 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:42:11.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:42:11.608 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:11.608 -07 000000608 INF: FPGA: Recv YRDPOS 124382
17-03-17 17:42:11.618 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:11.618 -07 000000486 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:11.628 -07 000000486 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:42:11.628 -07 000000486 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:42:11.628 -07 000000486 INF: Y Motor: Moved to 60.7334 after 1420 ms (table move)
17-03-17 17:42:11.638 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178215 mm (DAC = 38931)
17-03-17 17:42:11.638 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:11.638 -07 000000486 INF: FPGA: Recv ZSGSRD 37031
17-03-17 17:42:11.648 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:11.648 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:11.648 -07 000000486 INF: FPGA: Recv ZSGSRD 37033
17-03-17 17:42:11.658 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:11.658 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:11.658 -07 000000486 INF: FPGA: Recv ZSGSRD 37022
17-03-17 17:42:11.668 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:11.668 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:11.668 -07 000000486 INF: FPGA: Recv ZSGSRD 37034
17-03-17 17:42:11.678 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:11.678 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:11.678 -07 000000486 INF: FPGA: Recv ZSGSRD 37026
17-03-17 17:42:11.688 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:11.688 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:11.688 -07 000000569 INF: FPGA: Recv ZSGSRD 37037
17-03-17 17:42:11.698 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:11.698 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:11.698 -07 000000618 INF: FPGA: Recv ZSGSRD 37032
17-03-17 17:42:11.708 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:11.708 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:11.708 -07 000000438 INF: FPGA: Recv ZSGSRD 37032
17-03-17 17:42:11.718 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:11.718 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:11.718 -07 000000438 INF: FPGA: Recv ZSGSRD 37042
17-03-17 17:42:11.728 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:11.728 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:11.728 -07 000000438 INF: FPGA: Recv ZSGSRD 37024
17-03-17 17:42:11.738 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:11.738 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:11.738 -07 000000438 INF: FPGA: Recv ZPIEZORD 33085
17-03-17 17:42:11.748 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:11.748 -07 000000501 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.940 V. Piezo Error = -8.7 V.
17-03-17 17:42:11.748 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.2 um, Read 10 ADC samples: Avg = 37031 (-177.3 uncal um), Error = 0.9 uncal um, Median = 37032 (-177.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 37022 (-177.3 uncal um), Max = 37042 (-177.4 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:42:11.748 -07 000000501 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37031, posNoise = 11, negNoise = 9
17-03-17 17:42:11.748 -07 000000501 INF: Z Motor: After move to -0.178215, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:11.748 -07 000000501 INF: Z Motor: Settle wait time = 1423 ms, measure time = 107 ms (allowed 150 ms), total time = 1530 ms
17-03-17 17:42:11.748 -07 000000501 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:42:11.798 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 17:42:11.798 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:42:11.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:11.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:11.798 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:11.798 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:42:11.798 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:11.798 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:11.798 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:42:11.798 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:42:11.808 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:42:11.808 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:42:11.818 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:42:11.818 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:42:11.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:42:11.868 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:42:12.068 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:42:12.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:42:12.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:42:12.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:42:12.098 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 4.004458,
17-03-17 17:42:12.108 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:42:12.108 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 17:42:12.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 17:42:12.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:42:12.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:12.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:42:12.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 17:42:12.208 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:12.208 -07 000000576 INF: Autofocus start
17-03-17 17:42:12.208 -07 000000576 INF: MeasureProfile start
17-03-17 17:42:12.208 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:12.218 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:12.218 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:42:12.218 -07 000000576 INF: MeasureProfile done
17-03-17 17:42:12.218 -07 000000576 INF: X=0  Z correction [um]=-0.0713522
17-03-17 17:42:12.218 -07 000000576 INF: Autofocus finished
17-03-17 17:42:12.418 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:42:12.418 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 17:42:12.418 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.178218351832685. ----------
17-03-17 17:42:12.418 -07 000000610 INF: Cycle	4	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:42:12.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37428, sync = True, waitForSettling = True)
17-03-17 17:42:12.428 -07 000000610 INF: Z Motor: Moving to -0.171334 mm, started at -0.178218 mm, distance = 6.88 um
17-03-17 17:42:12.428 -07 000000610 INF: FPGA: Xmit ZDACW 37428\n [Z Motor]
17-03-17 17:42:12.428 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 17:42:12.438 -07 000000610 INF: FPGA: 'ZDACW 37428' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:12.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:12.438 -07 000000501 INF: FPGA: Recv ZDACR 37428
17-03-17 17:42:12.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:12.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:42:12.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:12.598 -07 000000382 INF: FPGA: Recv ZSGSRD 35963
17-03-17 17:42:12.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:12.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:12.608 -07 000000576 INF: FPGA: Recv ZSGSRD 35963
17-03-17 17:42:12.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:12.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:12.618 -07 000000618 INF: FPGA: Recv ZSGSRD 35959
17-03-17 17:42:12.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:12.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:12.628 -07 000000382 INF: FPGA: Recv ZSGSRD 35964
17-03-17 17:42:12.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:12.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:12.638 -07 000000576 INF: FPGA: Recv ZSGSRD 35964
17-03-17 17:42:12.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:12.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:12.648 -07 000000382 INF: FPGA: Recv ZSGSRD 35962
17-03-17 17:42:12.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:12.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:12.658 -07 000000576 INF: FPGA: Recv ZSGSRD 35960
17-03-17 17:42:12.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:12.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:12.668 -07 000000618 INF: FPGA: Recv ZSGSRD 35963
17-03-17 17:42:12.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:12.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:12.678 -07 000000618 INF: FPGA: Recv ZSGSRD 35962
17-03-17 17:42:12.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:12.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:12.698 -07 000000501 INF: FPGA: Recv ZSGSRD 35959
17-03-17 17:42:12.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:42:12.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:12.728 -07 000000501 INF: FPGA: Recv ZPIEZORD 31692
17-03-17 17:42:12.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 17:42:12.738 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.711 V. Piezo Error = -9.4 V.
17-03-17 17:42:12.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35962 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35962 (-170.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35959 (-170.5 uncal um), Max = 35964 (-170.5 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:42:12.738 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35962, posNoise = 2, negNoise = 3
17-03-17 17:42:12.738 -07 000000610 INF: Z Motor: After move to -0.171334, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:12.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 310 ms)
17-03-17 17:42:12.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:12.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:12.738 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:12.738 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:12.738 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:42:12.738 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:42:12.738 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:42:12.738 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:12.738 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:42:12.738 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:42:12.738 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:42:12.738 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:42:12.748 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:42:12.748 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:42:12.748 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:42:12.748 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:42:12.758 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 17:42:12.758 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 17:42:12.758 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 17:42:12.758 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 17:42:12.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37605 150\n [Camera]
17-03-17 17:42:12.968 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:42:13.358 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:42:13.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:42:13.358 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:13.358 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:13.358 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 17:42:13.358 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:42:13.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:42:13.358 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:13.358 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:13.358 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1049497648, 0x0, 418435064) start.
17-03-17 17:42:13.548 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37605 775
17-03-17 17:42:13.698 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:42:13.758 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 17:42:13.758 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 17:42:13.758 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:13.758 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1049497648, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 17:42:13.758 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 17:42:13.758 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:13.768 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:13.768 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 17:42:13.768 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:13.768 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 17:42:13.888 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:42:13.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:42:13.888 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:13.998 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:42:13.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:42:13.998 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:13.998 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:13.998 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:42:14.008 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:14.008 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 17:42:14.078 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:42:14.078 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:42:14.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37605 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-17 17:42:14.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:42:14.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.171350869053142. ------
17-03-17 17:42:14.088 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17792 mm
17-03-17 17:42:14.088 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:42:14.088 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:14.088 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 17:42:14.088 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38867, sync = True, waitForSettling = False)
17-03-17 17:42:14.088 -07 000000608 INF: Z Motor: Moving to -0.177922 mm, started at -0.171351 mm, distance = -6.57 um
17-03-17 17:42:14.088 -07 000000551 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 17:42:14.088 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:14.098 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:42:14.098 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:14.098 -07 000000561 INF: FPGA: Recv YRDPOS 124383
17-03-17 17:42:14.108 -07 000000608 INF: FPGA: Xmit ZDACW 38867\n [Z Motor]
17-03-17 17:42:14.108 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:42:14.108 -07 000000551 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:14.108 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 17:42:14.108 -07 000000551 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:42:14.108 -07 000000551 INF: Y Motor: Moving 1342 steps-19
17-03-17 17:42:14.118 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:42:14.118 -07 000000608 INF: FPGA: 'ZDACW 38867' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:42:14.128 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:42:14.138 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:14.138 -07 000000576 INF: FPGA: Recv ZDACR 38867
17-03-17 17:42:14.148 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:42:14.148 -07 000000608 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 17:42:14.318 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:42:14.318 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:42:14.398 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 17:42:14.398 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 17:42:14.398 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:14.398 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 17:42:14.398 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 17:42:14.398 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:14.408 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:14.408 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:14.408 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 17:42:14.408 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 17:42:14.498 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 17:42:14.498 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 17:42:14.528 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:14.538 -07 000000576 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:42:14.538 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:42:14.538 -07 000000551 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:14.538 -07 000000551 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 17:42:14.538 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.141 mm/sec
17-03-17 17:42:15.488 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:15.488 -07 000000501 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:42:15.498 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:15.498 -07 000000551 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:15.508 -07 000000551 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:42:15.508 -07 000000551 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:42:15.508 -07 000000551 INF: Y Motor: Moved to 61.5645 after 1424 ms (table move)
17-03-17 17:42:15.518 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177922 mm (DAC = 38867)
17-03-17 17:42:15.518 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:15.518 -07 000000569 INF: FPGA: Recv ZSGSRD 36987
17-03-17 17:42:15.528 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:42:15.528 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:15.528 -07 000000382 INF: FPGA: Recv ZSGSRD 36986
17-03-17 17:42:15.538 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:15.538 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:15.538 -07 000000608 INF: FPGA: Recv ZSGSRD 36981
17-03-17 17:42:15.548 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:15.548 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:15.548 -07 000000433 INF: FPGA: Recv ZSGSRD 36980
17-03-17 17:42:15.558 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:15.558 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:15.558 -07 000000551 INF: FPGA: Recv ZSGSRD 36988
17-03-17 17:42:15.568 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:15.568 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:15.568 -07 000000608 INF: FPGA: Recv ZSGSRD 36985
17-03-17 17:42:15.578 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:15.578 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:15.578 -07 000000576 INF: FPGA: Recv ZSGSRD 36988
17-03-17 17:42:15.588 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:42:15.588 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:15.588 -07 000000576 INF: FPGA: Recv ZSGSRD 36994
17-03-17 17:42:15.598 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:15.598 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:15.598 -07 000000569 INF: FPGA: Recv ZSGSRD 36984
17-03-17 17:42:15.608 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:15.608 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:15.608 -07 000000608 INF: FPGA: Recv ZSGSRD 36989
17-03-17 17:42:15.618 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:15.618 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:15.618 -07 000000608 INF: FPGA: Recv ZPIEZORD 33055
17-03-17 17:42:15.628 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:15.628 -07 000000618 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.931 V. Piezo Error = -8.7 V.
17-03-17 17:42:15.628 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36986 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36986 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36980 (-177.0 uncal um), Max = 36994 (-177.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:42:15.628 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36986, posNoise = 8, negNoise = 6
17-03-17 17:42:15.628 -07 000000618 INF: Z Motor: After move to -0.177922, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:15.628 -07 000000618 INF: Z Motor: Settle wait time = 1427 ms, measure time = 108 ms (allowed 150 ms), total time = 1535 ms
17-03-17 17:42:15.628 -07 000000618 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:42:15.678 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 17:42:15.678 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:42:15.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:15.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:15.678 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:15.678 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:42:15.678 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:15.678 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:15.678 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:42:15.678 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:42:15.688 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:42:15.688 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:42:15.698 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:42:15.698 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 17:42:15.698 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:42:15.748 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:42:15.948 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:42:15.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:42:15.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:42:15.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 17:42:15.978 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:42:15.988 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:42:15.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 17:42:16.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:42:16.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:16.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:42:16.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:42:16.088 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:16.758 -07 000000486 INF: Autofocus start
17-03-17 17:42:16.758 -07 000000486 INF: MeasureProfile start
17-03-17 17:42:16.768 -07 000000486 INF: MeasureProfile done
17-03-17 17:42:16.768 -07 000000486 INF: X=32  Z correction [um]=0.09220707
17-03-17 17:42:16.768 -07 000000486 INF: Autofocus finished
17-03-17 17:42:16.768 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:16.768 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:42:16.768 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 677 ms to get response, and 684 ms overall
17-03-17 17:42:16.768 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:42:16.768 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:42:16.978 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:42:16.978 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 200 ms to get response, and 202 ms overall
17-03-17 17:42:16.978 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.177929262286306. ----------
17-03-17 17:42:16.978 -07 000000610 INF: Cycle	4	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:42:16.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37400, sync = True, waitForSettling = True)
17-03-17 17:42:16.988 -07 000000610 INF: Z Motor: Moving to -0.171206 mm, started at -0.177929 mm, distance = 6.72 um
17-03-17 17:42:16.988 -07 000000610 INF: FPGA: Xmit ZDACW 37400\n [Z Motor]
17-03-17 17:42:16.988 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:42:16.998 -07 000000610 INF: FPGA: 'ZDACW 37400' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:42:16.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:16.998 -07 000000569 INF: FPGA: Recv ZDACR 37400
17-03-17 17:42:17.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:17.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:42:17.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:17.158 -07 000000486 INF: FPGA: Recv ZSGSRD 35941
17-03-17 17:42:17.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:17.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:17.168 -07 000000486 INF: FPGA: Recv ZSGSRD 35949
17-03-17 17:42:17.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:17.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:17.178 -07 000000486 INF: FPGA: Recv ZSGSRD 35935
17-03-17 17:42:17.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:17.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:17.188 -07 000000486 INF: FPGA: Recv ZSGSRD 35938
17-03-17 17:42:17.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:17.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:17.198 -07 000000486 INF: FPGA: Recv ZSGSRD 35944
17-03-17 17:42:17.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:17.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:17.208 -07 000000486 INF: FPGA: Recv ZSGSRD 35944
17-03-17 17:42:17.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:17.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:17.218 -07 000000486 INF: FPGA: Recv ZSGSRD 35943
17-03-17 17:42:17.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:17.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:17.228 -07 000000486 INF: FPGA: Recv ZSGSRD 35939
17-03-17 17:42:17.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:17.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:17.238 -07 000000486 INF: FPGA: Recv ZSGSRD 35943
17-03-17 17:42:17.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:17.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:17.248 -07 000000486 INF: FPGA: Recv ZSGSRD 35939
17-03-17 17:42:17.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:17.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:17.258 -07 000000486 INF: FPGA: Recv ZPIEZORD 31663
17-03-17 17:42:17.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:17.268 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.707 V. Piezo Error = -9.4 V.
17-03-17 17:42:17.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35942 (-170.3 uncal um), Error = 0.9 uncal um, Median = 35942 (-170.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35935 (-170.3 uncal um), Max = 35949 (-170.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:42:17.268 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35942, posNoise = 7, negNoise = 7
17-03-17 17:42:17.268 -07 000000610 INF: Z Motor: After move to -0.171206, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:17.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:42:17.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:17.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:17.268 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:17.268 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:17.268 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:42:17.268 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:17.278 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:42:17.278 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:42:17.278 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:42:17.278 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:42:17.288 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:42:17.288 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 17:42:17.288 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:42:17.288 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:42:17.288 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:42:17.288 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:42:17.288 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:42:17.288 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:42:17.298 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:42:17.298 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 17:42:17.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37576 150\n [Camera]
17-03-17 17:42:17.458 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 4.018051,
17-03-17 17:42:17.498 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:42:17.888 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:42:17.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:42:17.888 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:17.888 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:17.888 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 17:42:17.898 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:42:17.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:42:17.898 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:17.898 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:17.898 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1049497648, 0x0, 418435064) start.
17-03-17 17:42:18.088 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37576 775
17-03-17 17:42:18.238 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:42:18.278 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 17:42:18.278 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:42:18.278 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:18.278 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1049497648, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 17:42:18.278 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 17:42:18.278 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:18.278 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:42:18.278 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 17:42:18.278 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:42:18.288 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:42:18.418 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:42:18.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:42:18.418 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:18.428 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:42:18.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:42:18.428 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:18.428 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:18.428 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:42:18.428 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:18.428 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 17:42:18.618 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 17:42:18.618 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:42:18.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37576 150' command took 2 ms to send, 1302 ms to get response, and 1314 ms overall
17-03-17 17:42:18.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:42:18.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.171222384810307. ------
17-03-17 17:42:18.618 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:18.618 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17739 mm
17-03-17 17:42:18.618 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:42:18.628 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:18.628 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 17:42:18.628 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:42:18.628 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 17:42:18.628 -07 000000433 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 17:42:18.628 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38750, sync = True, waitForSettling = False)
17-03-17 17:42:18.628 -07 000000438 INF: Z Motor: Moving to -0.177386 mm, started at -0.171222 mm, distance = -6.16 um
17-03-17 17:42:18.638 -07 000000438 INF: FPGA: Xmit ZDACW 38750\n [Z Motor]
17-03-17 17:42:18.638 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:42:18.648 -07 000000438 INF: FPGA: 'ZDACW 38750' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:42:18.648 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:18.648 -07 000000618 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:42:18.658 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:42:18.658 -07 000000433 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:18.658 -07 000000433 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:42:18.658 -07 000000433 INF: Y Motor: Moving 1341 steps-17
17-03-17 17:42:18.658 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:18.658 -07 000000618 INF: FPGA: Recv ZDACR 38750
17-03-17 17:42:18.668 -07 000000438 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:42:18.668 -07 000000438 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 17:42:18.668 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:42:18.808 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 17:42:18.808 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 17:42:18.808 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:18.808 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:42:18.808 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 17:42:18.808 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:18.808 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:42:18.808 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:42:18.808 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:42:18.818 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:42:18.828 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:42:18.828 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 17:42:19.038 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 17:42:19.038 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 17:42:19.078 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:19.078 -07 000000459 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:42:19.088 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:19.088 -07 000000433 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:19.088 -07 000000433 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 17:42:19.088 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.160 mm/sec
17-03-17 17:42:20.038 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:20.038 -07 000000576 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:42:20.048 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:20.048 -07 000000433 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:20.058 -07 000000433 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:42:20.058 -07 000000433 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:42:20.058 -07 000000433 INF: Y Motor: Moved to 62.3960 after 1434 ms (table move)
17-03-17 17:42:20.068 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177386 mm (DAC = 38750)
17-03-17 17:42:20.068 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:20.068 -07 000000501 INF: FPGA: Recv ZSGSRD 36906
17-03-17 17:42:20.078 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:42:20.078 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:20.078 -07 000000486 INF: FPGA: Recv ZSGSRD 36907
17-03-17 17:42:20.088 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:20.088 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:20.088 -07 000000501 INF: FPGA: Recv ZSGSRD 36899
17-03-17 17:42:20.098 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:20.098 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:20.098 -07 000000618 INF: FPGA: Recv ZSGSRD 36907
17-03-17 17:42:20.108 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:20.108 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:20.108 -07 000000551 INF: FPGA: Recv ZSGSRD 36902
17-03-17 17:42:20.118 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:42:20.118 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:20.118 -07 000000486 INF: FPGA: Recv ZSGSRD 36904
17-03-17 17:42:20.128 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:20.128 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:20.128 -07 000000501 INF: FPGA: Recv ZSGSRD 36906
17-03-17 17:42:20.138 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:20.138 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:20.138 -07 000000486 INF: FPGA: Recv ZSGSRD 36897
17-03-17 17:42:20.148 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:20.148 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:20.148 -07 000000551 INF: FPGA: Recv ZSGSRD 36904
17-03-17 17:42:20.158 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:20.158 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:20.158 -07 000000501 INF: FPGA: Recv ZSGSRD 36904
17-03-17 17:42:20.168 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:20.168 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:20.168 -07 000000486 INF: FPGA: Recv ZPIEZORD 32957
17-03-17 17:42:20.178 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:20.178 -07 000000608 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.913 V. Piezo Error = -8.7 V.
17-03-17 17:42:20.178 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36904 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36904 (-176.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36897 (-176.5 uncal um), Max = 36907 (-176.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:42:20.178 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36904, posNoise = 3, negNoise = 7
17-03-17 17:42:20.178 -07 000000608 INF: Z Motor: After move to -0.177386, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:20.178 -07 000000608 INF: Z Motor: Settle wait time = 1438 ms, measure time = 108 ms (allowed 150 ms), total time = 1546 ms
17-03-17 17:42:20.178 -07 000000608 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:42:20.228 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 17:42:20.228 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:42:20.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:20.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:20.228 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:20.228 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:20.228 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:42:20.228 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:20.228 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:42:20.238 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:42:20.238 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:42:20.238 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:42:20.248 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:42:20.248 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 17:42:20.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:42:20.288 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:42:20.488 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:42:20.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:42:20.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:42:20.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 17:42:20.528 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:42:20.528 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 17:42:20.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:42:20.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:42:20.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:20.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:42:20.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:42:20.628 -07 000000618 INF: Autofocus start
17-03-17 17:42:20.628 -07 000000618 INF: MeasureProfile start
17-03-17 17:42:20.628 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:20.628 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:20.638 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:20.638 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:42:20.638 -07 000000618 INF: MeasureProfile done
17-03-17 17:42:20.638 -07 000000618 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:42:20.638 -07 000000618 INF: Autofocus finished
17-03-17 17:42:20.838 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:42:20.838 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:42:20.838 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.177402476890681. ----------
17-03-17 17:42:20.838 -07 000000610 INF: Cycle	4	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:42:20.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37265, sync = True, waitForSettling = True)
17-03-17 17:42:20.838 -07 000000610 INF: Z Motor: Moving to -0.170588 mm, started at -0.177402 mm, distance = 6.81 um
17-03-17 17:42:20.848 -07 000000610 INF: FPGA: Xmit ZDACW 37265\n [Z Motor]
17-03-17 17:42:20.848 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 17:42:20.858 -07 000000610 INF: FPGA: 'ZDACW 37265' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:20.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:20.858 -07 000000501 INF: FPGA: Recv ZDACR 37265
17-03-17 17:42:20.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:20.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:42:21.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:21.018 -07 000000618 INF: FPGA: Recv ZSGSRD 35842
17-03-17 17:42:21.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:21.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:21.028 -07 000000486 INF: FPGA: Recv ZSGSRD 35849
17-03-17 17:42:21.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:21.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:21.038 -07 000000433 INF: FPGA: Recv ZSGSRD 35843
17-03-17 17:42:21.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:21.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:21.048 -07 000000576 INF: FPGA: Recv ZSGSRD 35843
17-03-17 17:42:21.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:21.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:21.058 -07 000000576 INF: FPGA: Recv ZSGSRD 35845
17-03-17 17:42:21.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:21.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:21.068 -07 000000486 INF: FPGA: Recv ZSGSRD 35846
17-03-17 17:42:21.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:21.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:21.078 -07 000000618 INF: FPGA: Recv ZSGSRD 35850
17-03-17 17:42:21.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:21.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:21.088 -07 000000438 INF: FPGA: Recv ZSGSRD 35846
17-03-17 17:42:21.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:21.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:21.098 -07 000000576 INF: FPGA: Recv ZSGSRD 35841
17-03-17 17:42:21.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:21.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:21.108 -07 000000608 INF: FPGA: Recv ZSGSRD 35842
17-03-17 17:42:21.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:21.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:21.118 -07 000000551 INF: FPGA: Recv ZPIEZORD 31550
17-03-17 17:42:21.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:21.128 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -9.5 V.
17-03-17 17:42:21.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35845 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35844 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35841 (-169.7 uncal um), Max = 35850 (-169.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:42:21.128 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35845, posNoise = 5, negNoise = 4
17-03-17 17:42:21.128 -07 000000610 INF: Z Motor: After move to -0.170588, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:21.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:42:21.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:21.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:21.128 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:21.128 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:21.128 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:42:21.128 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:21.128 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:42:21.128 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:42:21.128 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:42:21.128 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:42:21.128 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 17:42:21.128 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:42:21.138 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:42:21.138 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:42:21.138 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:42:21.138 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:42:21.138 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:42:21.138 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:42:21.148 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:42:21.148 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:42:21.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37441 150\n [Camera]
17-03-17 17:42:21.348 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 17:42:21.518 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:42:21.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:42:21.738 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:42:21.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:42:21.738 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:21.738 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:21.738 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1084919912, 0x0, 391868352) start.
17-03-17 17:42:21.738 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:42:21.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:42:21.738 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:21.738 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:21.738 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1120342176, 0x0, 418435064) start.
17-03-17 17:42:21.928 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37441 775
17-03-17 17:42:22.078 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:42:22.118 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1084919912, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:42:22.118 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 17:42:22.118 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:22.118 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1120342176, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:42:22.118 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 17:42:22.118 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:22.128 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:22.128 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:42:22.128 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:22.128 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:42:22.268 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:42:22.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:42:22.268 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:22.268 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:22.268 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:42:22.268 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:42:22.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:42:22.268 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:22.268 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:22.268 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 17:42:22.458 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:42:22.458 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:42:22.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37441 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-17 17:42:22.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:42:22.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.170599236232556. ------
17-03-17 17:42:22.468 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:22.468 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17733 mm
17-03-17 17:42:22.468 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:42:22.468 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 17:42:22.468 -07 000000486 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 17:42:22.468 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38739, sync = True, waitForSettling = False)
17-03-17 17:42:22.468 -07 000000569 INF: Z Motor: Moving to -0.177336 mm, started at -0.170599 mm, distance = -6.74 um
17-03-17 17:42:22.468 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:22.478 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:22.478 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:22.478 -07 000000618 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:42:22.488 -07 000000569 INF: FPGA: Xmit ZDACW 38739\n [Z Motor]
17-03-17 17:42:22.488 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:42:22.488 -07 000000486 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:22.488 -07 000000486 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:42:22.488 -07 000000486 INF: Y Motor: Moving 1339 steps-14
17-03-17 17:42:22.488 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 17:42:22.498 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:42:22.498 -07 000000569 INF: FPGA: 'ZDACW 38739' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:42:22.508 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:42:22.528 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:22.528 -07 000000561 INF: FPGA: Recv ZDACR 38739
17-03-17 17:42:22.538 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 17:42:22.538 -07 000000569 INF: Z Motor: MoveAbsStepped took 64 ms (did NOT wait for settling yet))
17-03-17 17:42:22.678 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 17:42:22.678 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 17:42:22.678 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:22.678 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 17:42:22.678 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 17:42:22.678 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:22.678 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:42:22.678 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:42:22.678 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 17:42:22.688 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 17:42:22.698 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:42:22.698 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:42:22.838 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 4.027603,
17-03-17 17:42:22.878 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 17:42:22.878 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 17:42:22.918 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:22.918 -07 000000459 INF: FPGA: Recv YRDPOS 129484
17-03-17 17:42:22.928 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:22.928 -07 000000486 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:22.928 -07 000000486 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 17:42:22.928 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.837 mm, average velocity = 2.113 mm/sec
17-03-17 17:42:23.878 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:23.878 -07 000000459 INF: FPGA: Recv YRDPOS 129484
17-03-17 17:42:23.888 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:23.888 -07 000000486 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:23.898 -07 000000486 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:42:23.898 -07 000000486 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:42:23.898 -07 000000486 INF: Y Motor: Moved to 63.2246 after 1434 ms (table move)
17-03-17 17:42:23.908 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177336 mm (DAC = 38739)
17-03-17 17:42:23.908 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:23.908 -07 000000569 INF: FPGA: Recv ZSGSRD 36901
17-03-17 17:42:23.918 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:23.918 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:23.918 -07 000000576 INF: FPGA: Recv ZSGSRD 36890
17-03-17 17:42:23.928 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:23.928 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:23.928 -07 000000382 INF: FPGA: Recv ZSGSRD 36887
17-03-17 17:42:23.938 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:23.938 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:23.938 -07 000000486 INF: FPGA: Recv ZSGSRD 36893
17-03-17 17:42:23.948 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:23.948 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:23.948 -07 000000382 INF: FPGA: Recv ZSGSRD 36893
17-03-17 17:42:23.958 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:23.958 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:23.958 -07 000000486 INF: FPGA: Recv ZSGSRD 36896
17-03-17 17:42:23.968 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:23.968 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:23.968 -07 000000569 INF: FPGA: Recv ZSGSRD 36898
17-03-17 17:42:23.978 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:23.978 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:23.978 -07 000000438 INF: FPGA: Recv ZSGSRD 36898
17-03-17 17:42:23.988 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:23.988 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:23.988 -07 000000623 INF: FPGA: Recv ZSGSRD 36892
17-03-17 17:42:23.998 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:23.998 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:23.998 -07 000000438 INF: FPGA: Recv ZSGSRD 36893
17-03-17 17:42:24.008 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:24.008 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:24.008 -07 000000618 INF: FPGA: Recv ZPIEZORD 32970
17-03-17 17:42:24.018 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:24.018 -07 000000551 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.911 V. Piezo Error = -8.7 V.
17-03-17 17:42:24.018 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.3 um, Read 10 ADC samples: Avg = 36894 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36893 (-176.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36887 (-176.4 uncal um), Max = 36901 (-176.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:42:24.018 -07 000000551 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36894, posNoise = 7, negNoise = 7
17-03-17 17:42:24.018 -07 000000551 INF: Z Motor: After move to -0.177336, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:24.018 -07 000000551 INF: Z Motor: Settle wait time = 1436 ms, measure time = 108 ms (allowed 150 ms), total time = 1544 ms
17-03-17 17:42:24.018 -07 000000551 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:42:24.068 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 17:42:24.068 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:42:24.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:24.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:24.068 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:24.068 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:24.068 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:42:24.068 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:24.078 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:42:24.078 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:42:24.078 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:42:24.078 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:42:24.078 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:42:24.088 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:42:24.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:42:24.128 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:42:24.328 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:42:24.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:42:24.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:42:24.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-17 17:42:24.368 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:42:24.368 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 17:42:24.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:42:24.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:42:24.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:24.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:42:24.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:42:24.468 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:24.468 -07 000000576 INF: Autofocus start
17-03-17 17:42:24.468 -07 000000576 INF: MeasureProfile start
17-03-17 17:42:24.468 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:24.478 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:42:24.478 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:42:24.478 -07 000000576 INF: MeasureProfile done
17-03-17 17:42:24.478 -07 000000576 INF: X=0  Z correction [um]=-0.0713522
17-03-17 17:42:24.478 -07 000000576 INF: Autofocus finished
17-03-17 17:42:24.678 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:42:24.678 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:42:24.678 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.177338234769264. ----------
17-03-17 17:42:24.688 -07 000000610 INF: Cycle	4	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:42:24.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37236, sync = True, waitForSettling = True)
17-03-17 17:42:24.688 -07 000000610 INF: Z Motor: Moving to -0.170455 mm, started at -0.177338 mm, distance = 6.88 um
17-03-17 17:42:24.688 -07 000000610 INF: FPGA: Xmit ZDACW 37236\n [Z Motor]
17-03-17 17:42:24.688 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:42:24.698 -07 000000610 INF: FPGA: 'ZDACW 37236' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:24.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:24.698 -07 000000551 INF: FPGA: Recv ZDACR 37236
17-03-17 17:42:24.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:24.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:42:24.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:24.858 -07 000000551 INF: FPGA: Recv ZSGSRD 35827
17-03-17 17:42:24.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:24.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:24.868 -07 000000608 INF: FPGA: Recv ZSGSRD 35826
17-03-17 17:42:24.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:24.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:24.878 -07 000000551 INF: FPGA: Recv ZSGSRD 35822
17-03-17 17:42:24.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:24.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:24.888 -07 000000501 INF: FPGA: Recv ZSGSRD 35827
17-03-17 17:42:24.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:24.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:24.898 -07 000000551 INF: FPGA: Recv ZSGSRD 35827
17-03-17 17:42:24.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:24.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:24.908 -07 000000627 INF: FPGA: Recv ZSGSRD 35822
17-03-17 17:42:24.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:24.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:24.918 -07 000000551 INF: FPGA: Recv ZSGSRD 35826
17-03-17 17:42:24.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:24.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:24.928 -07 000000627 INF: FPGA: Recv ZSGSRD 35823
17-03-17 17:42:24.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:24.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:24.938 -07 000000561 INF: FPGA: Recv ZSGSRD 35830
17-03-17 17:42:24.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:24.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:24.948 -07 000000618 INF: FPGA: Recv ZSGSRD 35818
17-03-17 17:42:24.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:24.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:24.958 -07 000000608 INF: FPGA: Recv ZPIEZORD 31512
17-03-17 17:42:24.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:24.968 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.682 V. Piezo Error = -9.5 V.
17-03-17 17:42:24.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35825 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35826 (-169.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35818 (-169.6 uncal um), Max = 35830 (-169.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:42:24.968 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35825, posNoise = 5, negNoise = 7
17-03-17 17:42:24.968 -07 000000610 INF: Z Motor: After move to -0.170455, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:24.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:42:24.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:24.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:24.968 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:24.968 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:24.968 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:42:24.968 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:24.968 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:42:24.968 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:42:24.968 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:42:24.968 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:42:24.968 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:42:24.968 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:42:24.978 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:42:24.978 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:42:24.978 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:42:24.978 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:42:24.978 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:42:24.988 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:42:24.988 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:42:24.988 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:42:24.988 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37412 150\n [Camera]
17-03-17 17:42:25.188 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:42:25.578 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:42:25.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:42:25.578 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:25.578 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:25.578 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 17:42:25.578 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:42:25.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:42:25.578 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:25.578 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:25.578 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 17:42:25.768 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37412 775
17-03-17 17:42:25.918 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:42:25.958 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:42:25.958 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:42:25.958 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:25.958 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:42:25.958 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:42:25.958 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:25.958 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:25.958 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:42:25.968 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:42:25.968 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:42:26.108 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:42:26.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:42:26.108 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:26.108 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:26.108 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 17:42:26.108 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:42:26.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:42:26.108 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:26.108 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:26.108 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 17:42:26.298 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:42:26.298 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:42:26.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37412 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-17 17:42:26.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:42:26.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.224609375, Z-Position -0.170470751989721. ------
17-03-17 17:42:26.308 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:26.308 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17677 mm
17-03-17 17:42:26.308 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:42:26.308 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 17:42:26.308 -07 000000618 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 17:42:26.308 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38616, sync = True, waitForSettling = False)
17-03-17 17:42:26.308 -07 000000608 INF: Z Motor: Moving to -0.176773 mm, started at -0.170471 mm, distance = -6.30 um
17-03-17 17:42:26.318 -07 000000608 INF: FPGA: Xmit ZDACW 38616\n [Z Motor]
17-03-17 17:42:26.328 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:26.488 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:42:26.488 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 17:42:26.488 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:26.488 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:42:26.488 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:42:26.488 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:26.498 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:42:26.498 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:42:26.498 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:42:26.498 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:42:26.508 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:26.508 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:42:26.508 -07 000000561 INF: FPGA: Recv YRDPOS 129485
17-03-17 17:42:26.508 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 176 ms to get response, and 197 ms overall
17-03-17 17:42:26.508 -07 000000618 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:26.508 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 195 ms to get response, and 203 ms overall
17-03-17 17:42:26.508 -07 000000608 INF: FPGA: 'ZDACW 38616' command took 0 ms to send, 185 ms to get response, and 197 ms overall
17-03-17 17:42:26.508 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:26.508 -07 000000618 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:42:26.518 -07 000000618 INF: Y Motor: Moving 1340 steps-16
17-03-17 17:42:26.518 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:42:26.518 -07 000000382 INF: FPGA: Recv ZDACR 38616
17-03-17 17:42:26.518 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 17:42:26.518 -07 000000608 INF: Z Motor: MoveAbsStepped took 204 ms (did NOT wait for settling yet))
17-03-17 17:42:26.518 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:42:26.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:42:26.528 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:42:26.718 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:42:26.718 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 206 ms overall
17-03-17 17:42:26.898 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 17:42:26.898 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 17:42:26.928 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:26.938 -07 000000501 INF: FPGA: Recv YRDPOS 131189
17-03-17 17:42:26.938 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:42:26.938 -07 000000618 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:26.938 -07 000000618 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 17:42:26.938 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.160 mm/sec
17-03-17 17:42:27.888 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:27.888 -07 000000501 INF: FPGA: Recv YRDPOS 131190
17-03-17 17:42:27.898 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:27.898 -07 000000618 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:27.908 -07 000000618 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:42:27.908 -07 000000618 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:42:27.908 -07 000000618 INF: Y Motor: Moved to 64.0576 after 1597 ms (table move)
17-03-17 17:42:27.908 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176773 mm (DAC = 38616)
17-03-17 17:42:27.908 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:27.918 -07 000000627 INF: FPGA: Recv ZSGSRD 36810
17-03-17 17:42:27.918 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 17:42:27.918 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:27.918 -07 000000501 INF: FPGA: Recv ZSGSRD 36801
17-03-17 17:42:27.928 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:42:27.928 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:27.928 -07 000000382 INF: FPGA: Recv ZSGSRD 36802
17-03-17 17:42:27.938 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:27.938 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:27.938 -07 000000627 INF: FPGA: Recv ZSGSRD 36805
17-03-17 17:42:27.948 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:27.948 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:27.948 -07 000000623 INF: FPGA: Recv ZSGSRD 36804
17-03-17 17:42:27.958 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:27.958 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:27.958 -07 000000618 INF: FPGA: Recv ZSGSRD 36808
17-03-17 17:42:27.968 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:27.968 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:27.968 -07 000000623 INF: FPGA: Recv ZSGSRD 36813
17-03-17 17:42:27.978 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:27.978 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:27.978 -07 000000501 INF: FPGA: Recv ZSGSRD 36806
17-03-17 17:42:27.988 -07 000000551 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:27.988 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:27.988 -07 000000561 INF: FPGA: Recv ZSGSRD 36808
17-03-17 17:42:27.998 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:27.998 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:27.998 -07 000000627 INF: FPGA: Recv ZSGSRD 36806
17-03-17 17:42:28.008 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:28.008 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:28.008 -07 000000382 INF: FPGA: Recv ZPIEZORD 32820
17-03-17 17:42:28.018 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:28.018 -07 000000551 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.892 V. Piezo Error = -8.8 V.
17-03-17 17:42:28.018 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36806 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36806 (-175.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36801 (-175.8 uncal um), Max = 36813 (-175.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:42:28.018 -07 000000551 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36806, posNoise = 7, negNoise = 5
17-03-17 17:42:28.018 -07 000000551 INF: Z Motor: After move to -0.176773, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:28.018 -07 000000551 INF: Z Motor: Settle wait time = 1600 ms, measure time = 102 ms (allowed 150 ms), total time = 1702 ms
17-03-17 17:42:28.018 -07 000000551 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 17:42:28.068 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1757 ms
17-03-17 17:42:28.068 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:42:28.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:28.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:28.068 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:28.068 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:28.068 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:42:28.068 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:28.068 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:42:28.068 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:42:28.078 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:42:28.078 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:42:28.078 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:42:28.078 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 17:42:28.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:42:28.128 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:42:28.198 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 4.014009,
17-03-17 17:42:28.328 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:42:28.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:42:28.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:42:28.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172639504, 0x0, 559484976) start.
17-03-17 17:42:28.368 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:42:28.368 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 17:42:28.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 17:42:28.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172639504, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:42:28.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:28.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:42:28.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:42:28.468 -07 000000382 INF: Autofocus start
17-03-17 17:42:28.468 -07 000000382 INF: MeasureProfile start
17-03-17 17:42:28.468 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:28.468 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:28.478 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:28.488 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:42:28.488 -07 000000382 INF: MeasureProfile done
17-03-17 17:42:28.488 -07 000000382 INF: X=-32  Z correction [um]=-0.2344
17-03-17 17:42:28.488 -07 000000382 INF: Autofocus finished
17-03-17 17:42:28.688 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:42:28.688 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 17:42:28.688 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.176772904100789. ----------
17-03-17 17:42:28.688 -07 000000610 INF: Cycle	4	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:42:28.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37078, sync = True, waitForSettling = True)
17-03-17 17:42:28.698 -07 000000610 INF: Z Motor: Moving to -0.169732 mm, started at -0.176773 mm, distance = 7.04 um
17-03-17 17:42:28.698 -07 000000610 INF: FPGA: Xmit ZDACW 37078\n [Z Motor]
17-03-17 17:42:28.698 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 17:42:28.708 -07 000000610 INF: FPGA: 'ZDACW 37078' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:42:28.708 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:28.708 -07 000000576 INF: FPGA: Recv ZDACR 37078
17-03-17 17:42:28.718 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:28.718 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:42:28.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:28.868 -07 000000501 INF: FPGA: Recv ZSGSRD 35710
17-03-17 17:42:28.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:28.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:28.878 -07 000000501 INF: FPGA: Recv ZSGSRD 35716
17-03-17 17:42:28.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:28.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:28.888 -07 000000501 INF: FPGA: Recv ZSGSRD 35712
17-03-17 17:42:28.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:28.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:28.898 -07 000000501 INF: FPGA: Recv ZSGSRD 35710
17-03-17 17:42:28.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:28.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:28.908 -07 000000501 INF: FPGA: Recv ZSGSRD 35706
17-03-17 17:42:28.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:28.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:28.918 -07 000000501 INF: FPGA: Recv ZSGSRD 35714
17-03-17 17:42:28.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:28.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:28.928 -07 000000501 INF: FPGA: Recv ZSGSRD 35718
17-03-17 17:42:28.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:28.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:28.938 -07 000000501 INF: FPGA: Recv ZSGSRD 35712
17-03-17 17:42:28.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:28.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:28.948 -07 000000501 INF: FPGA: Recv ZSGSRD 35710
17-03-17 17:42:28.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:28.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:28.958 -07 000000576 INF: FPGA: Recv ZSGSRD 35711
17-03-17 17:42:28.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:28.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:28.968 -07 000000561 INF: FPGA: Recv ZPIEZORD 31395
17-03-17 17:42:28.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:28.978 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.658 V. Piezo Error = -9.5 V.
17-03-17 17:42:28.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35712 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35712 (-168.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35706 (-168.8 uncal um), Max = 35718 (-168.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:42:28.978 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35712, posNoise = 6, negNoise = 6
17-03-17 17:42:28.978 -07 000000610 INF: Z Motor: After move to -0.169732, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:28.978 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:42:28.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:28.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:28.978 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:28.978 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:28.978 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:42:28.978 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:28.978 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:42:28.978 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:42:28.978 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:42:28.978 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:42:28.978 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:42:28.978 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:42:28.988 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:42:28.988 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:42:28.988 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:42:28.988 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:42:28.998 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:42:28.998 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:42:28.998 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:42:28.998 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:42:28.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37255 150\n [Camera]
17-03-17 17:42:29.198 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:42:29.588 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:42:29.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:42:29.588 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:29.588 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:29.588 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 17:42:29.588 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:42:29.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:42:29.588 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:29.588 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:29.588 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 17:42:29.778 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37255 775
17-03-17 17:42:29.928 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:42:29.968 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:42:29.968 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:42:29.968 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:29.968 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:42:29.968 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:42:29.968 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:29.968 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:29.968 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:42:29.968 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:29.978 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:42:30.118 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 17:42:30.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 17:42:30.118 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:30.118 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:30.118 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 17:42:30.118 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 17:42:30.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 17:42:30.128 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:30.128 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:30.128 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 17:42:30.308 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:42:30.308 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:42:30.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37255 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:42:30.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:42:30.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.169744816017702. ------
17-03-17 17:42:30.318 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17622 mm
17-03-17 17:42:30.318 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:42:30.318 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:30.318 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 17:42:30.318 -07 000000486 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 17:42:30.328 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:30.498 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 17:42:30.498 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:42:30.498 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:30.498 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:42:30.498 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:42:30.498 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:42:30.498 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:30.508 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 17:42:30.508 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:42:30.508 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:42:30.528 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:30.528 -07 000000551 INF: FPGA: Recv YRDPOS 131190
17-03-17 17:42:30.528 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 191 ms to get response, and 206 ms overall
17-03-17 17:42:30.528 -07 000000486 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:30.528 -07 000000486 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:42:30.528 -07 000000486 INF: Y Motor: Moving 1336 steps-11
17-03-17 17:42:30.528 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 201 ms to get response, and 209 ms overall
17-03-17 17:42:30.528 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:42:30.528 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38496, sync = True, waitForSettling = False)
17-03-17 17:42:30.528 -07 000000618 INF: Z Motor: Moving to -0.176223 mm, started at -0.169745 mm, distance = -6.48 um
17-03-17 17:42:30.538 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:42:30.548 -07 000000618 INF: FPGA: Xmit ZDACW 38496\n [Z Motor]
17-03-17 17:42:30.548 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:42:30.558 -07 000000618 INF: FPGA: 'ZDACW 38496' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 17:42:30.558 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:30.558 -07 000000551 INF: FPGA: Recv ZDACR 38496
17-03-17 17:42:30.568 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:30.568 -07 000000618 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 17:42:30.738 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:42:30.738 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 17:42:30.908 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 17:42:30.908 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 378 ms overall
17-03-17 17:42:30.938 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:30.938 -07 000000576 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:42:30.948 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:30.948 -07 000000486 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:30.948 -07 000000486 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:42:30.948 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.835 mm, average velocity = 2.209 mm/sec
17-03-17 17:42:31.518 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:42:31.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:42:31.898 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:31.898 -07 000000618 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:42:31.908 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:31.908 -07 000000486 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:31.928 -07 000000486 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:42:31.928 -07 000000486 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:42:31.928 -07 000000486 INF: Y Motor: Moved to 64.8794 after 1606 ms (table move)
17-03-17 17:42:31.928 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176223 mm (DAC = 38496)
17-03-17 17:42:31.928 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:31.928 -07 000000438 INF: FPGA: Recv ZSGSRD 36730
17-03-17 17:42:31.938 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:42:31.938 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:31.938 -07 000000618 INF: FPGA: Recv ZSGSRD 36729
17-03-17 17:42:31.948 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:31.948 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:31.948 -07 000000551 INF: FPGA: Recv ZSGSRD 36730
17-03-17 17:42:31.958 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:31.958 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:31.958 -07 000000551 INF: FPGA: Recv ZSGSRD 36721
17-03-17 17:42:31.968 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:31.968 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:31.968 -07 000000618 INF: FPGA: Recv ZSGSRD 36720
17-03-17 17:42:31.978 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:31.978 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:31.978 -07 000000551 INF: FPGA: Recv ZSGSRD 36714
17-03-17 17:42:31.988 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:31.988 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:31.988 -07 000000551 INF: FPGA: Recv ZSGSRD 36720
17-03-17 17:42:31.998 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:31.998 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:31.998 -07 000000576 INF: FPGA: Recv ZSGSRD 36725
17-03-17 17:42:32.008 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:32.008 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:32.008 -07 000000486 INF: FPGA: Recv ZSGSRD 36725
17-03-17 17:42:32.018 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:32.018 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:32.018 -07 000000618 INF: FPGA: Recv ZSGSRD 36717
17-03-17 17:42:32.028 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:32.028 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:32.028 -07 000000618 INF: FPGA: Recv ZPIEZORD 32763
17-03-17 17:42:32.038 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:32.038 -07 000000561 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.874 V. Piezo Error = -8.8 V.
17-03-17 17:42:32.038 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36723 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36723 (-175.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36714 (-175.3 uncal um), Max = 36730 (-175.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:42:32.038 -07 000000561 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36723, posNoise = 7, negNoise = 9
17-03-17 17:42:32.038 -07 000000561 INF: Z Motor: After move to -0.176223, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:32.038 -07 000000561 INF: Z Motor: Settle wait time = 1401 ms, measure time = 107 ms (allowed 150 ms), total time = 1508 ms
17-03-17 17:42:32.038 -07 000000561 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:42:32.088 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1767 ms
17-03-17 17:42:32.088 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:42:32.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:32.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:32.088 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:32.088 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:42:32.088 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:32.088 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:32.088 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:42:32.088 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:42:32.098 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:42:32.098 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:42:32.098 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:42:32.098 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:42:32.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:42:32.148 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 17:42:32.348 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 17:42:32.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 17:42:32.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:42:32.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 17:42:32.388 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:42:32.388 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 17:42:32.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:42:32.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:42:32.468 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:32.468 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:42:32.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:42:32.488 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:32.488 -07 000000576 INF: Autofocus start
17-03-17 17:42:32.488 -07 000000576 INF: MeasureProfile start
17-03-17 17:42:32.488 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:32.498 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:32.498 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:42:32.498 -07 000000576 INF: MeasureProfile done
17-03-17 17:42:32.498 -07 000000576 INF: X=0  Z correction [um]=-0.0713522
17-03-17 17:42:32.498 -07 000000576 INF: Autofocus finished
17-03-17 17:42:32.698 -07 000000569 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:42:32.698 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:42:32.698 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.176239694493023. ----------
17-03-17 17:42:32.698 -07 000000610 INF: Cycle	4	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:42:32.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36993, sync = True, waitForSettling = True)
17-03-17 17:42:32.708 -07 000000610 INF: Z Motor: Moving to -0.169343 mm, started at -0.176240 mm, distance = 6.90 um
17-03-17 17:42:32.708 -07 000000610 INF: FPGA: Xmit ZDACW 36993\n [Z Motor]
17-03-17 17:42:32.708 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 17:42:32.718 -07 000000610 INF: FPGA: 'ZDACW 36993' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:32.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:32.718 -07 000000569 INF: FPGA: Recv ZDACR 36993
17-03-17 17:42:32.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:32.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:42:32.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:32.878 -07 000000459 INF: FPGA: Recv ZSGSRD 35653
17-03-17 17:42:32.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:32.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:32.888 -07 000000576 INF: FPGA: Recv ZSGSRD 35655
17-03-17 17:42:32.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:42:32.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:32.898 -07 000000486 INF: FPGA: Recv ZSGSRD 35647
17-03-17 17:42:32.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:32.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:32.908 -07 000000576 INF: FPGA: Recv ZSGSRD 35646
17-03-17 17:42:32.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:32.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:32.918 -07 000000618 INF: FPGA: Recv ZSGSRD 35648
17-03-17 17:42:32.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:32.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:32.928 -07 000000551 INF: FPGA: Recv ZSGSRD 35653
17-03-17 17:42:32.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:32.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:32.938 -07 000000618 INF: FPGA: Recv ZSGSRD 35653
17-03-17 17:42:32.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:32.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:32.948 -07 000000576 INF: FPGA: Recv ZSGSRD 35649
17-03-17 17:42:32.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:32.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:32.958 -07 000000486 INF: FPGA: Recv ZSGSRD 35650
17-03-17 17:42:32.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:32.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:32.968 -07 000000569 INF: FPGA: Recv ZSGSRD 35653
17-03-17 17:42:32.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:32.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:32.978 -07 000000618 INF: FPGA: Recv ZPIEZORD 31307
17-03-17 17:42:32.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:32.988 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.645 V. Piezo Error = -9.6 V.
17-03-17 17:42:32.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35651 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35652 (-168.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35646 (-168.4 uncal um), Max = 35655 (-168.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:42:32.988 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35651, posNoise = 4, negNoise = 5
17-03-17 17:42:32.988 -07 000000610 INF: Z Motor: After move to -0.169343, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:32.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:42:32.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:32.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:32.988 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:42:32.988 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:32.988 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:32.988 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:42:32.988 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:42:32.988 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:32.988 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:42:32.988 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:42:32.988 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:42:32.988 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:42:32.988 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:42:32.988 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:42:32.988 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:42:32.988 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:42:32.998 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:42:32.998 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:42:33.008 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 17:42:33.008 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:42:33.008 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37169 150\n [Camera]
17-03-17 17:42:33.208 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:42:33.558 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.994908,
17-03-17 17:42:33.598 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:42:33.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:42:33.598 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:33.598 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:33.598 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 17:42:33.598 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:42:33.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:42:33.598 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:33.598 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:33.598 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 17:42:33.788 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37169 775
17-03-17 17:42:33.938 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:42:33.978 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:42:33.978 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:42:33.978 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:33.978 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:42:33.978 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:42:33.978 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:33.978 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:33.978 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:42:33.978 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:42:33.988 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:42:34.128 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:42:34.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:42:34.128 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:42:34.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:42:34.128 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:34.268 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:34.268 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:34.268 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 17:42:34.268 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:34.268 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 17:42:34.318 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:42:34.318 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:42:34.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37169 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-17 17:42:34.318 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:42:34.318 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.169352939077055. ------
17-03-17 17:42:34.328 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:34.328 -07 000000569 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17585 mm
17-03-17 17:42:34.328 -07 000000569 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:42:34.668 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 17:42:34.668 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 17:42:34.668 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:34.668 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 17:42:34.668 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:42:34.668 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:34.668 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:42:34.678 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:42:34.678 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 544 ms.
17-03-17 17:42:34.678 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 17:42:34.688 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 17:42:34.688 -07 000000576 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 17:42:34.688 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:34.688 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:34.698 -07 000000486 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:42:34.698 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:42:34.698 -07 000000576 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:34.698 -07 000000576 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:42:34.698 -07 000000576 INF: Y Motor: Moving 1349 steps-27
17-03-17 17:42:34.698 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:42:34.698 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 359 ms to get response, and 367 ms overall
17-03-17 17:42:34.698 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38415, sync = True, waitForSettling = False)
17-03-17 17:42:34.698 -07 000000486 INF: Z Motor: Moving to -0.175853 mm, started at -0.169353 mm, distance = -6.50 um
17-03-17 17:42:34.708 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:42:34.718 -07 000000486 INF: FPGA: Xmit ZDACW 38415\n [Z Motor]
17-03-17 17:42:35.258 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:42:35.258 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:42:35.258 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 17:42:35.258 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 540 ms to get response, and 559 ms overall
17-03-17 17:42:35.258 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 550 ms to get response, and 560 ms overall
17-03-17 17:42:35.258 -07 000000486 INF: FPGA: 'ZDACW 38415' command took 0 ms to send, 530 ms to get response, and 559 ms overall
17-03-17 17:42:35.258 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:35.258 -07 000000382 INF: FPGA: Recv ZDACR 38415
17-03-17 17:42:35.268 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:42:35.268 -07 000000486 INF: Z Motor: MoveAbsStepped took 568 ms (did NOT wait for settling yet))
17-03-17 17:42:35.288 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:35.288 -07 000000486 INF: FPGA: Recv YRDPOS 134583
17-03-17 17:42:35.298 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:35.298 -07 000000576 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:35.298 -07 000000576 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 17:42:35.298 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 560 ms, distance = 0.843 mm, average velocity = 1.506 mm/sec
17-03-17 17:42:36.248 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:36.248 -07 000000382 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:42:36.258 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:36.258 -07 000000576 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:36.278 -07 000000576 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:42:36.278 -07 000000576 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:42:36.278 -07 000000576 INF: Y Motor: Moved to 65.7148 after 1590 ms (table move)
17-03-17 17:42:36.278 -07 000000569 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175853 mm (DAC = 38415)
17-03-17 17:42:36.278 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:36.288 -07 000000438 INF: FPGA: Recv ZSGSRD 36667
17-03-17 17:42:36.288 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:42:36.288 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:36.288 -07 000000382 INF: FPGA: Recv ZSGSRD 36660
17-03-17 17:42:36.298 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:42:36.298 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:36.298 -07 000000576 INF: FPGA: Recv ZSGSRD 36658
17-03-17 17:42:36.308 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:36.308 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:36.308 -07 000000486 INF: FPGA: Recv ZSGSRD 36666
17-03-17 17:42:36.318 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:36.318 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:36.318 -07 000000486 INF: FPGA: Recv ZSGSRD 36666
17-03-17 17:42:36.328 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:36.328 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:36.328 -07 000000576 INF: FPGA: Recv ZSGSRD 36662
17-03-17 17:42:36.338 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:36.338 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:36.338 -07 000000576 INF: FPGA: Recv ZSGSRD 36666
17-03-17 17:42:36.348 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:36.348 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:36.348 -07 000000608 INF: FPGA: Recv ZSGSRD 36662
17-03-17 17:42:36.358 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:36.358 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:36.358 -07 000000576 INF: FPGA: Recv ZSGSRD 36671
17-03-17 17:42:36.368 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:36.368 -07 000000569 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:36.368 -07 000000382 INF: FPGA: Recv ZSGSRD 36665
17-03-17 17:42:36.378 -07 000000569 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:36.378 -07 000000569 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:36.378 -07 000000608 INF: FPGA: Recv ZPIEZORD 32717
17-03-17 17:42:36.388 -07 000000569 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:36.388 -07 000000569 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.862 V. Piezo Error = -8.7 V.
17-03-17 17:42:36.388 -07 000000569 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36664 (-175.0 uncal um), Error = 0.9 uncal um, Median = 36666 (-175.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36658 (-174.9 uncal um), Max = 36671 (-175.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:42:36.388 -07 000000569 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36664, posNoise = 7, negNoise = 6
17-03-17 17:42:36.388 -07 000000569 INF: Z Motor: After move to -0.175853, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:36.388 -07 000000569 INF: Z Motor: Settle wait time = 1587 ms, measure time = 102 ms (allowed 150 ms), total time = 1689 ms
17-03-17 17:42:36.388 -07 000000569 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 17:42:36.438 -07 000000569 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2106 ms
17-03-17 17:42:36.438 -07 000000569 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:42:36.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:36.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:36.438 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:36.438 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:36.438 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:42:36.438 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:36.438 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:42:36.438 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:42:36.448 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:42:36.448 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:42:36.448 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:42:36.448 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:42:36.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:42:36.498 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:42:36.518 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:42:36.518 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:42:36.698 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:42:36.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:42:36.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:42:36.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 17:42:36.738 -07 000000569 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:42:36.738 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 17:42:36.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 17:42:36.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:42:36.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:36.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:42:36.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:42:36.838 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:36.838 -07 000000433 INF: Autofocus start
17-03-17 17:42:36.838 -07 000000433 INF: MeasureProfile start
17-03-17 17:42:36.838 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:36.848 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:36.848 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:42:36.848 -07 000000433 INF: MeasureProfile done
17-03-17 17:42:36.848 -07 000000433 INF: X=48  Z correction [um]=0.1739867
17-03-17 17:42:36.848 -07 000000433 INF: Autofocus finished
17-03-17 17:42:37.048 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:42:37.048 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:42:37.048 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.175860665976659. ----------
17-03-17 17:42:37.048 -07 000000610 INF: Cycle	4	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:42:37.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36966, sync = True, waitForSettling = True)
17-03-17 17:42:37.058 -07 000000610 INF: Z Motor: Moving to -0.169220 mm, started at -0.175861 mm, distance = 6.64 um
17-03-17 17:42:37.058 -07 000000610 INF: FPGA: Xmit ZDACW 36966\n [Z Motor]
17-03-17 17:42:37.058 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:42:37.068 -07 000000610 INF: FPGA: 'ZDACW 36966' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:37.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:37.068 -07 000000382 INF: FPGA: Recv ZDACR 36966
17-03-17 17:42:37.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:37.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:42:37.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:37.228 -07 000000569 INF: FPGA: Recv ZSGSRD 35631
17-03-17 17:42:37.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:37.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:37.238 -07 000000486 INF: FPGA: Recv ZSGSRD 35632
17-03-17 17:42:37.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:37.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:37.248 -07 000000608 INF: FPGA: Recv ZSGSRD 35634
17-03-17 17:42:37.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:37.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:37.258 -07 000000433 INF: FPGA: Recv ZSGSRD 35632
17-03-17 17:42:37.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:42:37.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:37.268 -07 000000576 INF: FPGA: Recv ZSGSRD 35631
17-03-17 17:42:37.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:37.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:37.278 -07 000000433 INF: FPGA: Recv ZSGSRD 35634
17-03-17 17:42:37.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:37.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:37.288 -07 000000608 INF: FPGA: Recv ZSGSRD 35633
17-03-17 17:42:37.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:37.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:37.298 -07 000000433 INF: FPGA: Recv ZSGSRD 35634
17-03-17 17:42:37.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:37.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:37.308 -07 000000627 INF: FPGA: Recv ZSGSRD 35634
17-03-17 17:42:37.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:37.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:37.318 -07 000000569 INF: FPGA: Recv ZSGSRD 35631
17-03-17 17:42:37.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:37.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:37.328 -07 000000608 INF: FPGA: Recv ZPIEZORD 31311
17-03-17 17:42:37.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:37.338 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.641 V. Piezo Error = -9.5 V.
17-03-17 17:42:37.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35633 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35632 (-168.4 uncal um), StdDev = 1 (0.0 uncal um), Range = 3 (0.0 uncal um), Min = 35631 (-168.4 uncal um), Max = 35634 (-168.4 uncal um), Pos Noise = 1 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 17:42:37.338 -07 000000610 INF: Z Motor: ADC noise = 2, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35633, posNoise = 1, negNoise = 2
17-03-17 17:42:37.338 -07 000000610 INF: Z Motor: After move to -0.169220, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:37.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:42:37.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:37.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:37.338 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:37.338 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:37.338 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:42:37.338 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:37.338 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:42:37.338 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:42:37.338 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:42:37.338 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:42:37.338 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:42:37.338 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:42:37.348 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:42:37.348 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:42:37.348 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:42:37.348 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:42:37.358 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:42:37.358 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:42:37.358 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:42:37.358 -07 000000608 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:42:37.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37143 150\n [Camera]
17-03-17 17:42:37.558 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:42:37.948 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:42:37.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:42:37.948 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:37.948 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:42:37.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:42:37.958 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:38.068 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:38.068 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2286110824, 0x0, 391868352) start.
17-03-17 17:42:38.068 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:38.068 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 17:42:38.138 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37143 775
17-03-17 17:42:38.288 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:42:38.458 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2286110824, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 17:42:38.458 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 17:42:38.458 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:38.458 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 17:42:38.458 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:42:38.458 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:38.468 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:38.468 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 17:42:38.468 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:42:38.468 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-17 17:42:38.478 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:42:38.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:42:38.478 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:38.478 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:42:38.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:42:38.478 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:38.478 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:38.478 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:42:38.478 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:38.488 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-17 17:42:38.668 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:42:38.668 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:42:38.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37143 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-17 17:42:38.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:42:38.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.169237303258503. ------
17-03-17 17:42:38.678 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:38.678 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17562 mm
17-03-17 17:42:38.678 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:42:38.678 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:38.678 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 17:42:38.678 -07 000000623 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 17:42:38.678 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38365, sync = True, waitForSettling = False)
17-03-17 17:42:38.678 -07 000000459 INF: Z Motor: Moving to -0.175624 mm, started at -0.169237 mm, distance = -6.39 um
17-03-17 17:42:38.688 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:38.688 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:38.688 -07 000000561 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:42:38.698 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:42:38.698 -07 000000623 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:38.698 -07 000000623 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:42:38.698 -07 000000623 INF: Y Motor: Moving 1340 steps-17
17-03-17 17:42:38.698 -07 000000459 INF: FPGA: Xmit ZDACW 38365\n [Z Motor]
17-03-17 17:42:38.698 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:42:38.708 -07 000000459 INF: FPGA: 'ZDACW 38365' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 17:42:38.708 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:42:38.718 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:42:38.728 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:38.728 -07 000000627 INF: FPGA: Recv ZDACR 38365
17-03-17 17:42:38.738 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:42:38.738 -07 000000459 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 17:42:38.888 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 17:42:38.888 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 17:42:38.888 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:38.888 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 17:42:38.888 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:42:38.888 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:38.888 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:38.888 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:38.888 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 17:42:38.898 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 17:42:38.908 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:42:38.908 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 17:42:38.918 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.997626,
17-03-17 17:42:39.088 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 17:42:39.088 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:42:39.118 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:39.128 -07 000000459 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:42:39.128 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:42:39.128 -07 000000623 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:39.128 -07 000000623 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:42:39.128 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 17:42:40.078 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:40.078 -07 000000459 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:42:40.088 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:40.088 -07 000000623 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:40.108 -07 000000623 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:42:40.108 -07 000000623 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:42:40.108 -07 000000623 INF: Y Motor: Moved to 66.5396 after 1422 ms (table move)
17-03-17 17:42:40.108 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175624 mm (DAC = 38365)
17-03-17 17:42:40.108 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:40.108 -07 000000459 INF: FPGA: Recv ZSGSRD 36629
17-03-17 17:42:40.118 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:40.118 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:40.118 -07 000000627 INF: FPGA: Recv ZSGSRD 36627
17-03-17 17:42:40.128 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:40.128 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:40.128 -07 000000459 INF: FPGA: Recv ZSGSRD 36616
17-03-17 17:42:40.138 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:40.138 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:40.138 -07 000000627 INF: FPGA: Recv ZSGSRD 36620
17-03-17 17:42:40.148 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:40.148 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:40.148 -07 000000486 INF: FPGA: Recv ZSGSRD 36627
17-03-17 17:42:40.158 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:40.158 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:40.158 -07 000000486 INF: FPGA: Recv ZSGSRD 36638
17-03-17 17:42:40.168 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:40.168 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:40.168 -07 000000627 INF: FPGA: Recv ZSGSRD 36635
17-03-17 17:42:40.178 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:40.178 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:40.178 -07 000000486 INF: FPGA: Recv ZSGSRD 36628
17-03-17 17:42:40.188 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:40.188 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:40.188 -07 000000486 INF: FPGA: Recv ZSGSRD 36626
17-03-17 17:42:40.198 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:40.198 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:40.198 -07 000000623 INF: FPGA: Recv ZSGSRD 36625
17-03-17 17:42:40.208 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:40.208 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:40.208 -07 000000623 INF: FPGA: Recv ZPIEZORD 32619
17-03-17 17:42:40.218 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:40.218 -07 000000608 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.854 V. Piezo Error = -8.9 V.
17-03-17 17:42:40.218 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.6 um, Read 10 ADC samples: Avg = 36627 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36627 (-174.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 36616 (-174.7 uncal um), Max = 36638 (-174.8 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 17:42:40.218 -07 000000608 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36627, posNoise = 11, negNoise = 11
17-03-17 17:42:40.218 -07 000000608 INF: Z Motor: After move to -0.175624, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:40.218 -07 000000608 INF: Z Motor: Settle wait time = 1425 ms, measure time = 107 ms (allowed 150 ms), total time = 1532 ms
17-03-17 17:42:40.218 -07 000000608 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:42:40.268 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 17:42:40.268 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:42:40.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:40.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:40.268 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:40.268 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:40.268 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:42:40.268 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:40.268 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:42:40.268 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:42:40.278 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:42:40.278 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:42:40.288 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:42:40.288 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 17:42:40.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:42:40.328 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:42:40.528 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:42:40.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:42:40.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:42:40.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 17:42:40.568 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:42:40.568 -07 000000608 INF: FPGA: Recv CAMSNAP
17-03-17 17:42:40.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:42:40.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:42:40.648 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:40.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:42:40.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:42:40.668 -07 000000551 INF: Autofocus start
17-03-17 17:42:40.668 -07 000000551 INF: MeasureProfile start
17-03-17 17:42:40.668 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:40.668 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:40.678 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:40.678 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:42:40.678 -07 000000551 INF: MeasureProfile done
17-03-17 17:42:40.678 -07 000000551 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 17:42:40.678 -07 000000551 INF: Autofocus finished
17-03-17 17:42:40.878 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:42:40.878 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:42:40.878 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.175622970127414. ----------
17-03-17 17:42:40.878 -07 000000610 INF: Cycle	4	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:42:40.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36845, sync = True, waitForSettling = True)
17-03-17 17:42:40.888 -07 000000610 INF: Z Motor: Moving to -0.168666 mm, started at -0.175623 mm, distance = 6.96 um
17-03-17 17:42:40.888 -07 000000610 INF: FPGA: Xmit ZDACW 36845\n [Z Motor]
17-03-17 17:42:40.888 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 17:42:40.898 -07 000000610 INF: FPGA: 'ZDACW 36845' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:42:40.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:40.898 -07 000000627 INF: FPGA: Recv ZDACR 36845
17-03-17 17:42:40.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:40.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:42:41.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:41.058 -07 000000623 INF: FPGA: Recv ZSGSRD 35544
17-03-17 17:42:41.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:41.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:41.068 -07 000000608 INF: FPGA: Recv ZSGSRD 35544
17-03-17 17:42:41.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:41.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:41.078 -07 000000459 INF: FPGA: Recv ZSGSRD 35550
17-03-17 17:42:41.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:41.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:41.088 -07 000000608 INF: FPGA: Recv ZSGSRD 35545
17-03-17 17:42:41.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:41.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:41.098 -07 000000459 INF: FPGA: Recv ZSGSRD 35547
17-03-17 17:42:41.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:41.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:41.108 -07 000000608 INF: FPGA: Recv ZSGSRD 35547
17-03-17 17:42:41.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:41.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:41.118 -07 000000623 INF: FPGA: Recv ZSGSRD 35549
17-03-17 17:42:41.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:41.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:41.128 -07 000000608 INF: FPGA: Recv ZSGSRD 35551
17-03-17 17:42:41.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:41.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:41.138 -07 000000623 INF: FPGA: Recv ZSGSRD 35539
17-03-17 17:42:41.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:41.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:41.148 -07 000000608 INF: FPGA: Recv ZSGSRD 35546
17-03-17 17:42:41.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:41.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:41.158 -07 000000623 INF: FPGA: Recv ZPIEZORD 31215
17-03-17 17:42:41.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:41.168 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -9.5 V.
17-03-17 17:42:41.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35546 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35546 (-167.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35539 (-167.8 uncal um), Max = 35551 (-167.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:42:41.168 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35546, posNoise = 5, negNoise = 7
17-03-17 17:42:41.168 -07 000000610 INF: Z Motor: After move to -0.168666, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:41.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:42:41.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:41.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:41.168 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:42:41.168 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:42:41.168 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:41.168 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:41.168 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:42:41.168 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:42:41.168 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:42:41.168 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:41.168 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:42:41.168 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:42:41.178 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:42:41.178 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:42:41.178 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:42:41.178 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:42:41.188 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:42:41.188 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:42:41.188 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:42:41.188 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:42:41.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37022 150\n [Camera]
17-03-17 17:42:41.388 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:42:41.528 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:42:41.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:42:41.778 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:42:41.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:42:41.778 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:41.778 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:41.778 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2321533088, 0x0, 391868352) start.
17-03-17 17:42:41.778 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:42:41.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:42:41.778 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:41.778 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:41.778 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2356955352, 0x0, 418435064) start.
17-03-17 17:42:41.968 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37022 775
17-03-17 17:42:42.118 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:42:42.158 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2321533088, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:42:42.158 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:42:42.158 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:42.158 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2356955352, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:42:42.158 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:42:42.158 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:42.158 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:42.158 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:42:42.158 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:42.168 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:42:42.308 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:42:42.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:42:42.308 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:42.308 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:42.308 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1049497648, 0x0, 391868352) start.
17-03-17 17:42:42.308 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:42:42.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:42:42.308 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:42.308 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:42.318 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1084919912, 0x0, 418435064) start.
17-03-17 17:42:42.498 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:42:42.498 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:42:42.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37022 150' command took 2 ms to send, 1308 ms to get response, and 1312 ms overall
17-03-17 17:42:42.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:42:42.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.16867839680217. ------
17-03-17 17:42:42.508 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:42.508 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17548 mm
17-03-17 17:42:42.508 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:42:42.508 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:42.518 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:42:42.518 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 17:42:42.518 -07 000000618 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 17:42:42.518 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:42:42.518 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38335, sync = True, waitForSettling = False)
17-03-17 17:42:42.518 -07 000000459 INF: Z Motor: Moving to -0.175486 mm, started at -0.168678 mm, distance = -6.81 um
17-03-17 17:42:42.528 -07 000000459 INF: FPGA: Xmit ZDACW 38335\n [Z Motor]
17-03-17 17:42:42.528 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:42:42.538 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:42.538 -07 000000459 INF: FPGA: 'ZDACW 38335' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 17:42:42.538 -07 000000576 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:42:42.548 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:42:42.548 -07 000000618 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:42.548 -07 000000618 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:42:42.548 -07 000000618 INF: Y Motor: Moving 1349 steps-27
17-03-17 17:42:42.548 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:42.548 -07 000000576 INF: FPGA: Recv ZDACR 38335
17-03-17 17:42:42.558 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:42:42.558 -07 000000459 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 17:42:42.558 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:42:42.688 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1084919912, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:42:42.688 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:42:42.688 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:42.688 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 1049497648, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:42:42.688 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:42:42.688 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:42.688 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:42:42.698 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:42:42.698 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:42:42.698 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:42:42.718 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:42:42.718 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:42:42.928 -07 000000608 INF: FPGA: Recv YMVTILE
17-03-17 17:42:42.928 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 17:42:42.958 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:42.968 -07 000000438 INF: FPGA: Recv YRDPOS 137978
17-03-17 17:42:42.968 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:42:42.968 -07 000000618 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:42.968 -07 000000618 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 17:42:42.968 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.173 mm/sec
17-03-17 17:42:43.918 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:43.918 -07 000000459 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:42:43.928 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:43.928 -07 000000618 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:43.948 -07 000000618 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:42:43.948 -07 000000618 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:42:43.948 -07 000000618 INF: Y Motor: Moved to 67.3726 after 1430 ms (table move)
17-03-17 17:42:43.948 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175486 mm (DAC = 38335)
17-03-17 17:42:43.948 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:43.948 -07 000000551 INF: FPGA: Recv ZSGSRD 36607
17-03-17 17:42:43.958 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:42:43.968 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:43.968 -07 000000551 INF: FPGA: Recv ZSGSRD 36604
17-03-17 17:42:43.978 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:42:43.978 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:43.978 -07 000000551 INF: FPGA: Recv ZSGSRD 36602
17-03-17 17:42:43.988 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:43.988 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:43.988 -07 000000618 INF: FPGA: Recv ZSGSRD 36608
17-03-17 17:42:43.998 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:43.998 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:43.998 -07 000000551 INF: FPGA: Recv ZSGSRD 36612
17-03-17 17:42:44.008 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:44.008 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:44.008 -07 000000501 INF: FPGA: Recv ZSGSRD 36609
17-03-17 17:42:44.018 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:44.018 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:44.018 -07 000000501 INF: FPGA: Recv ZSGSRD 36610
17-03-17 17:42:44.028 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:44.028 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:44.028 -07 000000608 INF: FPGA: Recv ZSGSRD 36608
17-03-17 17:42:44.038 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:44.038 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:44.038 -07 000000551 INF: FPGA: Recv ZSGSRD 36606
17-03-17 17:42:44.048 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:44.048 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:44.048 -07 000000382 INF: FPGA: Recv ZSGSRD 36604
17-03-17 17:42:44.058 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:44.058 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:44.058 -07 000000608 INF: FPGA: Recv ZPIEZORD 32622
17-03-17 17:42:44.068 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:44.068 -07 000000623 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.850 V. Piezo Error = -8.8 V.
17-03-17 17:42:44.068 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36607 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36608 (-174.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36602 (-174.6 uncal um), Max = 36612 (-174.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:42:44.068 -07 000000623 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36607, posNoise = 5, negNoise = 5
17-03-17 17:42:44.068 -07 000000623 INF: Z Motor: After move to -0.175486, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:44.068 -07 000000623 INF: Z Motor: Settle wait time = 1433 ms, measure time = 116 ms (allowed 150 ms), total time = 1549 ms
17-03-17 17:42:44.068 -07 000000623 INF: Z Motor: Waiting extra 34 ms after reading position to reach expected total of 150 ms
17-03-17 17:42:44.108 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 17:42:44.108 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:42:44.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:44.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:44.108 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:44.108 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:44.108 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:42:44.108 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:44.108 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:42:44.108 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:42:44.118 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:42:44.118 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:42:44.128 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:42:44.128 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 17:42:44.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:42:44.178 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:42:44.278 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.973092,
17-03-17 17:42:44.378 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:42:44.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:42:44.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:42:44.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-17 17:42:44.418 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:42:44.418 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 17:42:44.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 17:42:44.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:42:44.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:44.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:42:44.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:42:44.518 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:44.518 -07 000000551 INF: Autofocus start
17-03-17 17:42:44.518 -07 000000551 INF: MeasureProfile start
17-03-17 17:42:44.528 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:44.528 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:44.528 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:42:44.528 -07 000000551 INF: MeasureProfile done
17-03-17 17:42:44.528 -07 000000551 INF: X=0  Z correction [um]=-0.0713522
17-03-17 17:42:44.528 -07 000000551 INF: Autofocus finished
17-03-17 17:42:44.728 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:42:44.728 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:42:44.728 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.175494485884578. ----------
17-03-17 17:42:44.728 -07 000000610 INF: Cycle	4	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:42:44.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36832, sync = True, waitForSettling = True)
17-03-17 17:42:44.738 -07 000000610 INF: Z Motor: Moving to -0.168606 mm, started at -0.175494 mm, distance = 6.89 um
17-03-17 17:42:44.738 -07 000000610 INF: FPGA: Xmit ZDACW 36832\n [Z Motor]
17-03-17 17:42:44.738 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:42:44.748 -07 000000610 INF: FPGA: 'ZDACW 36832' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:42:44.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:44.748 -07 000000551 INF: FPGA: Recv ZDACR 36832
17-03-17 17:42:44.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:44.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:42:44.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:44.908 -07 000000608 INF: FPGA: Recv ZSGSRD 35530
17-03-17 17:42:44.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:44.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:44.918 -07 000000623 INF: FPGA: Recv ZSGSRD 35542
17-03-17 17:42:44.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:44.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:44.928 -07 000000618 INF: FPGA: Recv ZSGSRD 35544
17-03-17 17:42:44.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:44.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:44.938 -07 000000382 INF: FPGA: Recv ZSGSRD 35536
17-03-17 17:42:44.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:44.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:44.948 -07 000000551 INF: FPGA: Recv ZSGSRD 35538
17-03-17 17:42:44.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:44.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:44.958 -07 000000623 INF: FPGA: Recv ZSGSRD 35535
17-03-17 17:42:44.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:44.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:44.968 -07 000000608 INF: FPGA: Recv ZSGSRD 35539
17-03-17 17:42:44.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:44.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:44.978 -07 000000382 INF: FPGA: Recv ZSGSRD 35532
17-03-17 17:42:44.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:44.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:44.998 -07 000000569 INF: FPGA: Recv ZSGSRD 35543
17-03-17 17:42:45.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:42:45.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:45.018 -07 000000623 INF: FPGA: Recv ZSGSRD 35538
17-03-17 17:42:45.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:42:45.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:45.028 -07 000000569 INF: FPGA: Recv ZPIEZORD 31209
17-03-17 17:42:45.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:45.038 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.620 V. Piezo Error = -9.5 V.
17-03-17 17:42:45.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35538 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35538 (-167.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35530 (-167.7 uncal um), Max = 35544 (-167.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:42:45.038 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35538, posNoise = 6, negNoise = 8
17-03-17 17:42:45.038 -07 000000610 INF: Z Motor: After move to -0.168606, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:45.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 299 ms)
17-03-17 17:42:45.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:45.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:45.038 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:45.038 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:45.038 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:42:45.038 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:45.038 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:42:45.038 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:42:45.038 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:42:45.038 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:42:45.038 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:42:45.038 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:42:45.048 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:42:45.048 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:42:45.048 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:42:45.048 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:42:45.058 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:42:45.058 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:42:45.058 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:42:45.058 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:42:45.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37008 150\n [Camera]
17-03-17 17:42:45.258 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:42:45.658 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 17:42:45.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 17:42:45.658 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:45.658 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:45.658 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1120342176, 0x0, 391868352) start.
17-03-17 17:42:45.658 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 17:42:45.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 17:42:45.658 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:45.658 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:45.658 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:42:45.848 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37008 775
17-03-17 17:42:45.998 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:42:46.038 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1120342176, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:42:46.038 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:42:46.038 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:46.038 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:42:46.038 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:42:46.038 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:46.038 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:42:46.038 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:42:46.038 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:42:46.048 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:42:46.188 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:42:46.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:42:46.188 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:46.188 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:46.188 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:42:46.188 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:42:46.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:42:46.188 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:46.188 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:46.188 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 17:42:46.378 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:42:46.378 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:42:46.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37008 150' command took 2 ms to send, 1303 ms to get response, and 1318 ms overall
17-03-17 17:42:46.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:42:46.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.168627003105036. ------
17-03-17 17:42:46.498 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:46.498 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17467 mm
17-03-17 17:42:46.498 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:42:46.508 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38157, sync = True, waitForSettling = False)
17-03-17 17:42:46.508 -07 000000576 INF: Z Motor: Moving to -0.174672 mm, started at -0.168627 mm, distance = -6.04 um
17-03-17 17:42:46.508 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 17:42:46.508 -07 000000627 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 17:42:46.508 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:46.508 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 17:42:46.508 -07 000000576 INF: FPGA: Xmit ZDACW 38157\n [Z Motor]
17-03-17 17:42:46.508 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:42:46.518 -07 000000576 INF: FPGA: 'ZDACW 38157' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:42:46.518 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:46.518 -07 000000551 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:42:46.528 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:42:46.528 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 17:42:46.528 -07 000000627 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:46.528 -07 000000627 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:42:46.528 -07 000000627 INF: Y Motor: Moving 1344 steps-22
17-03-17 17:42:46.528 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:42:46.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:42:46.538 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:46.538 -07 000000382 INF: FPGA: Recv ZDACR 38157
17-03-17 17:42:46.548 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:42:46.548 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:42:46.548 -07 000000576 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 17:42:46.568 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 17:42:46.568 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 17:42:46.568 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:46.578 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 17:42:46.578 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:42:46.578 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:46.578 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:46.578 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 17:42:46.578 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 17:42:46.588 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 17:42:46.728 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:42:46.728 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 17:42:46.928 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 17:42:46.928 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 17:42:46.958 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:46.958 -07 000000561 INF: FPGA: Recv YRDPOS 139685
17-03-17 17:42:46.968 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:42:46.968 -07 000000627 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:46.968 -07 000000627 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 17:42:46.968 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.840 mm, average velocity = 2.100 mm/sec
17-03-17 17:42:47.918 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:47.918 -07 000000618 INF: FPGA: Recv YRDPOS 139685
17-03-17 17:42:47.928 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:47.928 -07 000000627 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:47.938 -07 000000627 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:42:47.938 -07 000000627 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:42:47.938 -07 000000627 INF: Y Motor: Moved to 68.2056 after 1438 ms (table move)
17-03-17 17:42:47.948 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174672 mm (DAC = 38157)
17-03-17 17:42:47.948 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:47.948 -07 000000627 INF: FPGA: Recv ZSGSRD 36486
17-03-17 17:42:47.958 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:42:47.958 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:47.958 -07 000000551 INF: FPGA: Recv ZSGSRD 36476
17-03-17 17:42:47.968 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:47.968 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:47.968 -07 000000627 INF: FPGA: Recv ZSGSRD 36477
17-03-17 17:42:47.978 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:47.978 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:47.978 -07 000000561 INF: FPGA: Recv ZSGSRD 36486
17-03-17 17:42:47.988 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:47.988 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:47.988 -07 000000561 INF: FPGA: Recv ZSGSRD 36482
17-03-17 17:42:47.998 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:47.998 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:47.998 -07 000000561 INF: FPGA: Recv ZSGSRD 36486
17-03-17 17:42:48.008 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:48.008 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:48.008 -07 000000576 INF: FPGA: Recv ZSGSRD 36482
17-03-17 17:42:48.018 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:48.018 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:48.018 -07 000000561 INF: FPGA: Recv ZSGSRD 36474
17-03-17 17:42:48.028 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:48.028 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:48.028 -07 000000576 INF: FPGA: Recv ZSGSRD 36475
17-03-17 17:42:48.038 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:48.038 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:48.038 -07 000000561 INF: FPGA: Recv ZSGSRD 36475
17-03-17 17:42:48.048 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:48.048 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:48.048 -07 000000576 INF: FPGA: Recv ZPIEZORD 32481
17-03-17 17:42:48.058 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:48.058 -07 000000623 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.822 V. Piezo Error = -8.8 V.
17-03-17 17:42:48.058 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36480 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36480 (-173.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36474 (-173.8 uncal um), Max = 36486 (-173.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:42:48.058 -07 000000623 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36480, posNoise = 6, negNoise = 6
17-03-17 17:42:48.058 -07 000000623 INF: Z Motor: After move to -0.174672, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:48.058 -07 000000623 INF: Z Motor: Settle wait time = 1441 ms, measure time = 108 ms (allowed 150 ms), total time = 1549 ms
17-03-17 17:42:48.058 -07 000000623 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:42:48.108 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 17:42:48.108 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:42:48.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:48.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:48.108 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:48.108 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:48.108 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:42:48.108 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:48.108 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:42:48.108 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:42:48.118 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:42:48.118 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:42:48.118 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:42:48.118 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:42:48.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:42:48.168 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:42:48.368 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:42:48.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:42:48.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:42:48.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:42:48.408 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:42:48.408 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 17:42:48.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 17:42:48.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:42:48.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:48.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:42:48.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:42:48.508 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:48.508 -07 000000623 INF: Autofocus start
17-03-17 17:42:48.508 -07 000000623 INF: MeasureProfile start
17-03-17 17:42:48.508 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:48.518 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:42:48.518 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:42:48.518 -07 000000623 INF: MeasureProfile done
17-03-17 17:42:48.518 -07 000000623 INF: X=64  Z correction [um]=0.2557664
17-03-17 17:42:48.518 -07 000000623 INF: Autofocus finished
17-03-17 17:42:48.718 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:42:48.718 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:42:48.728 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.174678610942575. ----------
17-03-17 17:42:48.728 -07 000000610 INF: Cycle	4	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:42:48.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36725, sync = True, waitForSettling = True)
17-03-17 17:42:48.728 -07 000000610 INF: Z Motor: Moving to -0.168116 mm, started at -0.174679 mm, distance = 6.56 um
17-03-17 17:42:48.728 -07 000000610 INF: FPGA: Xmit ZDACW 36725\n [Z Motor]
17-03-17 17:42:48.728 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:42:48.738 -07 000000610 INF: FPGA: 'ZDACW 36725' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:48.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:48.738 -07 000000569 INF: FPGA: Recv ZDACR 36725
17-03-17 17:42:48.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:48.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:42:48.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:48.898 -07 000000433 INF: FPGA: Recv ZSGSRD 35463
17-03-17 17:42:48.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:48.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:48.908 -07 000000627 INF: FPGA: Recv ZSGSRD 35458
17-03-17 17:42:48.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:48.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:48.918 -07 000000623 INF: FPGA: Recv ZSGSRD 35466
17-03-17 17:42:48.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:48.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:48.928 -07 000000627 INF: FPGA: Recv ZSGSRD 35458
17-03-17 17:42:48.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:48.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:48.938 -07 000000569 INF: FPGA: Recv ZSGSRD 35463
17-03-17 17:42:48.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:48.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:48.948 -07 000000433 INF: FPGA: Recv ZSGSRD 35455
17-03-17 17:42:48.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:48.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:48.958 -07 000000569 INF: FPGA: Recv ZSGSRD 35458
17-03-17 17:42:48.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:48.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:48.968 -07 000000627 INF: FPGA: Recv ZSGSRD 35467
17-03-17 17:42:48.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:48.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:48.978 -07 000000433 INF: FPGA: Recv ZSGSRD 35457
17-03-17 17:42:48.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:48.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:48.988 -07 000000433 INF: FPGA: Recv ZSGSRD 35459
17-03-17 17:42:48.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:48.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:48.998 -07 000000569 INF: FPGA: Recv ZPIEZORD 31099
17-03-17 17:42:49.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:49.008 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.604 V. Piezo Error = -9.6 V.
17-03-17 17:42:49.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35460 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35458 (-167.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35455 (-167.2 uncal um), Max = 35467 (-167.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:42:49.008 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35460, posNoise = 7, negNoise = 5
17-03-17 17:42:49.008 -07 000000610 INF: Z Motor: After move to -0.168116, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:49.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:42:49.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:49.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:49.008 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:49.008 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:42:49.008 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:49.008 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:42:49.008 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:42:49.008 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:49.008 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:42:49.008 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:42:49.008 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:42:49.008 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:42:49.018 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:42:49.018 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:42:49.018 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:42:49.018 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:42:49.028 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:42:49.028 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:42:49.028 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:42:49.028 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:42:49.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36902 150\n [Camera]
17-03-17 17:42:49.228 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:42:49.618 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:42:49.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:42:49.618 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:49.618 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:42:49.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:42:49.618 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:49.628 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:49.628 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:42:49.628 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:49.628 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 17:42:49.638 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.955391,
17-03-17 17:42:49.808 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36902 775
17-03-17 17:42:49.958 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:42:49.998 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:42:49.998 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 17:42:49.998 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:49.998 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:42:49.998 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:42:49.998 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:49.998 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:49.998 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:42:49.998 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:50.008 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:42:50.148 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:42:50.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:42:50.148 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:50.148 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:42:50.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:42:50.148 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:50.278 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:50.278 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 17:42:50.278 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:50.278 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 17:42:50.338 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:42:50.338 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:42:50.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36902 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-17 17:42:50.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:42:50.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.168125914557978. ------
17-03-17 17:42:50.348 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:50.348 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17466 mm
17-03-17 17:42:50.348 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:42:50.348 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:50.348 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 17:42:50.348 -07 000000486 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 17:42:50.348 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 38155, sync = True, waitForSettling = False)
17-03-17 17:42:50.348 -07 000000608 INF: Z Motor: Moving to -0.174662 mm, started at -0.168126 mm, distance = -6.54 um
17-03-17 17:42:50.358 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:50.358 -07 000000608 INF: FPGA: Xmit ZDACW 38155\n [Z Motor]
17-03-17 17:42:50.358 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 17:42:50.368 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:50.368 -07 000000608 INF: FPGA: 'ZDACW 38155' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:42:50.368 -07 000000501 INF: FPGA: Recv YRDPOS 139685
17-03-17 17:42:50.378 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:42:50.378 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 17:42:50.378 -07 000000486 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:50.378 -07 000000486 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:42:50.378 -07 000000486 INF: Y Motor: Moving 1339 steps-14
17-03-17 17:42:50.388 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:50.388 -07 000000623 INF: FPGA: Recv ZDACR 38155
17-03-17 17:42:50.398 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:42:50.398 -07 000000608 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 17:42:50.408 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:42:50.578 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:42:50.578 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:42:50.658 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 17:42:50.658 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 17:42:50.658 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:50.668 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 17:42:50.668 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:42:50.668 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:50.668 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:42:50.668 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:42:50.668 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-17 17:42:50.668 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 519 ms.
17-03-17 17:42:50.778 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 17:42:50.778 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-17 17:42:50.808 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:50.818 -07 000000618 INF: FPGA: Recv YRDPOS 141368
17-03-17 17:42:50.818 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:42:50.818 -07 000000486 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:50.818 -07 000000486 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 17:42:50.818 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.837 mm, average velocity = 2.057 mm/sec
17-03-17 17:42:51.528 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:42:51.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:42:51.768 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:51.768 -07 000000551 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:42:51.778 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:51.778 -07 000000486 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:51.788 -07 000000486 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:42:51.788 -07 000000486 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:42:51.788 -07 000000486 INF: Y Motor: Moved to 69.0278 after 1442 ms (table move)
17-03-17 17:42:51.798 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174662 mm (DAC = 38155)
17-03-17 17:42:51.798 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:51.798 -07 000000438 INF: FPGA: Recv ZSGSRD 36482
17-03-17 17:42:51.808 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:42:51.808 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:51.808 -07 000000486 INF: FPGA: Recv ZSGSRD 36480
17-03-17 17:42:51.818 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:51.818 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:51.818 -07 000000438 INF: FPGA: Recv ZSGSRD 36478
17-03-17 17:42:51.828 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:51.828 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:51.828 -07 000000486 INF: FPGA: Recv ZSGSRD 36482
17-03-17 17:42:51.838 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:51.838 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:51.838 -07 000000459 INF: FPGA: Recv ZSGSRD 36486
17-03-17 17:42:51.848 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:51.848 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:51.848 -07 000000486 INF: FPGA: Recv ZSGSRD 36476
17-03-17 17:42:51.858 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:51.858 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:51.858 -07 000000608 INF: FPGA: Recv ZSGSRD 36475
17-03-17 17:42:51.868 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:42:51.868 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:51.868 -07 000000561 INF: FPGA: Recv ZSGSRD 36477
17-03-17 17:42:51.878 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:51.878 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:51.878 -07 000000551 INF: FPGA: Recv ZSGSRD 36483
17-03-17 17:42:51.888 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:51.888 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:51.888 -07 000000561 INF: FPGA: Recv ZSGSRD 36480
17-03-17 17:42:51.898 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:51.898 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:51.898 -07 000000576 INF: FPGA: Recv ZPIEZORD 32468
17-03-17 17:42:51.908 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:51.908 -07 000000627 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.822 V. Piezo Error = -8.9 V.
17-03-17 17:42:51.908 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36480 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36480 (-173.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36475 (-173.8 uncal um), Max = 36486 (-173.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:42:51.908 -07 000000627 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36480, posNoise = 6, negNoise = 5
17-03-17 17:42:51.908 -07 000000627 INF: Z Motor: After move to -0.174662, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:51.908 -07 000000627 INF: Z Motor: Settle wait time = 1445 ms, measure time = 108 ms (allowed 150 ms), total time = 1553 ms
17-03-17 17:42:51.908 -07 000000627 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:42:51.958 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 17:42:51.958 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:42:51.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:51.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:51.958 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:51.958 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:42:51.958 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:51.958 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:51.958 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:42:51.958 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:42:51.958 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:42:51.958 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:42:51.968 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:42:51.968 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:42:51.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:42:52.018 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:42:52.218 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:42:52.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:42:52.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:42:52.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 17:42:52.258 -07 000000608 INF: FPGA: Recv @CAMSNAP 281
17-03-17 17:42:52.258 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 17:42:52.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 17:42:52.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:42:52.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:52.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:42:52.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:42:52.358 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:52.358 -07 000000459 INF: Autofocus start
17-03-17 17:42:52.358 -07 000000459 INF: MeasureProfile start
17-03-17 17:42:52.358 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:52.368 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:42:52.368 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:42:52.368 -07 000000459 INF: MeasureProfile done
17-03-17 17:42:52.368 -07 000000459 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:42:52.368 -07 000000459 INF: Autofocus finished
17-03-17 17:42:52.568 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:42:52.568 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:42:52.568 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.174678610942575. ----------
17-03-17 17:42:52.568 -07 000000610 INF: Cycle	4	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:42:52.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36670, sync = True, waitForSettling = True)
17-03-17 17:42:52.578 -07 000000610 INF: Z Motor: Moving to -0.167864 mm, started at -0.174679 mm, distance = 6.81 um
17-03-17 17:42:52.578 -07 000000610 INF: FPGA: Xmit ZDACW 36670\n [Z Motor]
17-03-17 17:42:52.578 -07 000000608 INF: FPGA: Recv ZDACW
17-03-17 17:42:52.588 -07 000000610 INF: FPGA: 'ZDACW 36670' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:42:52.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:52.588 -07 000000486 INF: FPGA: Recv ZDACR 36670
17-03-17 17:42:52.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:52.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:42:52.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:52.748 -07 000000608 INF: FPGA: Recv ZSGSRD 35421
17-03-17 17:42:52.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:52.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:52.758 -07 000000382 INF: FPGA: Recv ZSGSRD 35422
17-03-17 17:42:52.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:52.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:52.768 -07 000000459 INF: FPGA: Recv ZSGSRD 35426
17-03-17 17:42:52.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:52.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:52.778 -07 000000382 INF: FPGA: Recv ZSGSRD 35418
17-03-17 17:42:52.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:52.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:52.788 -07 000000486 INF: FPGA: Recv ZSGSRD 35417
17-03-17 17:42:52.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:52.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:52.798 -07 000000382 INF: FPGA: Recv ZSGSRD 35426
17-03-17 17:42:52.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:52.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:52.808 -07 000000459 INF: FPGA: Recv ZSGSRD 35421
17-03-17 17:42:52.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:52.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:52.818 -07 000000382 INF: FPGA: Recv ZSGSRD 35422
17-03-17 17:42:52.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:52.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:52.828 -07 000000459 INF: FPGA: Recv ZSGSRD 35417
17-03-17 17:42:52.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:52.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:52.838 -07 000000382 INF: FPGA: Recv ZSGSRD 35420
17-03-17 17:42:52.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:52.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:52.848 -07 000000459 INF: FPGA: Recv ZPIEZORD 31051
17-03-17 17:42:52.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:52.858 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.595 V. Piezo Error = -9.6 V.
17-03-17 17:42:52.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35421 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35421 (-167.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35417 (-167.0 uncal um), Max = 35426 (-167.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:42:52.858 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35421, posNoise = 5, negNoise = 4
17-03-17 17:42:52.858 -07 000000610 INF: Z Motor: After move to -0.167864, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:52.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:42:52.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:52.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:52.858 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:52.858 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:42:52.858 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:42:52.858 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:42:52.858 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:52.858 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:52.858 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:42:52.858 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:42:52.858 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:42:52.858 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:42:52.858 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:42:52.858 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:42:52.868 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:42:52.868 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:42:52.868 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:42:52.868 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:42:52.878 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:42:52.878 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:42:52.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36847 150\n [Camera]
17-03-17 17:42:53.078 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:42:53.468 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:42:53.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:42:53.468 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:53.468 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:42:53.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:42:53.468 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:53.468 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:53.468 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:42:53.468 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:53.468 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 17:42:53.658 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36847 776
17-03-17 17:42:53.808 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:42:53.848 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:42:53.848 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:42:53.848 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:53.848 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 17:42:53.848 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:42:53.848 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:53.848 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:53.848 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:42:53.848 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:53.858 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:42:53.998 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:42:53.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:42:53.998 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:53.998 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:42:53.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:42:53.998 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:53.998 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 17:42:53.998 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:53.998 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:53.998 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1049497648, 0x0, 418435064) start.
17-03-17 17:42:54.188 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:42:54.188 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:42:54.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36847 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-17 17:42:54.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:42:54.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.16787537028445. ------
17-03-17 17:42:54.198 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:54.198 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17412 mm
17-03-17 17:42:54.198 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:42:54.198 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:54.198 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 17:42:54.198 -07 000000623 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 17:42:54.198 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38037, sync = True, waitForSettling = False)
17-03-17 17:42:54.198 -07 000000561 INF: Z Motor: Moving to -0.174122 mm, started at -0.167875 mm, distance = -6.25 um
17-03-17 17:42:54.208 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:42:54.208 -07 000000561 INF: FPGA: Xmit ZDACW 38037\n [Z Motor]
17-03-17 17:42:54.208 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 17:42:54.218 -07 000000561 INF: FPGA: 'ZDACW 38037' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:42:54.218 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:54.218 -07 000000576 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:42:54.228 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:42:54.228 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:42:54.228 -07 000000623 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:54.228 -07 000000623 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:42:54.228 -07 000000623 INF: Y Motor: Moving 1352 steps-31
17-03-17 17:42:54.238 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:54.238 -07 000000382 INF: FPGA: Recv ZDACR 38037
17-03-17 17:42:54.248 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:42:54.248 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:42:54.248 -07 000000561 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 17:42:54.378 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 1049497648, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:42:54.378 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:42:54.378 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:54.378 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:42:54.378 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:42:54.378 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:54.378 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:42:54.388 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:42:54.388 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:42:54.388 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:42:54.428 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:42:54.428 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:42:54.618 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 17:42:54.618 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:42:54.648 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:54.658 -07 000000576 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:42:54.658 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 17:42:54.658 -07 000000623 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:54.658 -07 000000623 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 17:42:54.658 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-17 17:42:54.998 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 4.003063,
17-03-17 17:42:55.608 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:55.608 -07 000000459 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:42:55.618 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:55.618 -07 000000623 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:55.628 -07 000000623 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:42:55.628 -07 000000623 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:42:55.628 -07 000000623 INF: Y Motor: Moved to 69.8638 after 1432 ms (table move)
17-03-17 17:42:55.638 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174122 mm (DAC = 38037)
17-03-17 17:42:55.638 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:55.638 -07 000000623 INF: FPGA: Recv ZSGSRD 36404
17-03-17 17:42:55.648 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:42:55.648 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:55.648 -07 000000623 INF: FPGA: Recv ZSGSRD 36388
17-03-17 17:42:55.658 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:55.658 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:55.658 -07 000000623 INF: FPGA: Recv ZSGSRD 36392
17-03-17 17:42:55.668 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:55.668 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:55.668 -07 000000623 INF: FPGA: Recv ZSGSRD 36393
17-03-17 17:42:55.678 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:55.678 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:55.678 -07 000000486 INF: FPGA: Recv ZSGSRD 36396
17-03-17 17:42:55.688 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:55.688 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:55.688 -07 000000486 INF: FPGA: Recv ZSGSRD 36398
17-03-17 17:42:55.698 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:55.698 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:55.698 -07 000000627 INF: FPGA: Recv ZSGSRD 36397
17-03-17 17:42:55.708 -07 000000438 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:55.708 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:55.708 -07 000000627 INF: FPGA: Recv ZSGSRD 36392
17-03-17 17:42:55.718 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:55.718 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:55.718 -07 000000627 INF: FPGA: Recv ZSGSRD 36395
17-03-17 17:42:55.728 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:55.728 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:55.728 -07 000000627 INF: FPGA: Recv ZSGSRD 36392
17-03-17 17:42:55.738 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:55.738 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:55.738 -07 000000627 INF: FPGA: Recv ZPIEZORD 32366
17-03-17 17:42:55.748 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:55.748 -07 000000438 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.804 V. Piezo Error = -8.9 V.
17-03-17 17:42:55.748 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36395 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36394 (-173.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36388 (-173.2 uncal um), Max = 36404 (-173.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:42:55.748 -07 000000438 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36395, posNoise = 9, negNoise = 7
17-03-17 17:42:55.748 -07 000000438 INF: Z Motor: After move to -0.174122, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:55.748 -07 000000438 INF: Z Motor: Settle wait time = 1435 ms, measure time = 108 ms (allowed 150 ms), total time = 1543 ms
17-03-17 17:42:55.748 -07 000000438 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:42:55.798 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 17:42:55.798 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:42:55.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:55.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:55.798 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:55.798 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:55.798 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:42:55.798 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:55.798 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:42:55.798 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:42:55.808 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 17:42:55.808 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:42:55.818 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:42:55.818 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 17:42:55.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:42:55.868 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:42:56.068 -07 000000569 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:42:56.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:42:56.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:42:56.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:42:56.108 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:42:56.108 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 17:42:56.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 287 ms overall
17-03-17 17:42:56.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 17:42:56.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:56.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:42:56.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 17:42:56.208 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:56.208 -07 000000486 INF: Autofocus start
17-03-17 17:42:56.208 -07 000000486 INF: MeasureProfile start
17-03-17 17:42:56.208 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:56.218 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:42:56.218 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:42:56.218 -07 000000486 INF: MeasureProfile done
17-03-17 17:42:56.218 -07 000000486 INF: X=48  Z correction [um]=0.1739867
17-03-17 17:42:56.218 -07 000000486 INF: Autofocus finished
17-03-17 17:42:56.418 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:42:56.418 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:42:56.418 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.174132552910525. ----------
17-03-17 17:42:56.418 -07 000000610 INF: Cycle	4	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:42:56.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36588, sync = True, waitForSettling = True)
17-03-17 17:42:56.418 -07 000000610 INF: Z Motor: Moving to -0.167489 mm, started at -0.174133 mm, distance = 6.64 um
17-03-17 17:42:56.418 -07 000000610 INF: FPGA: Xmit ZDACW 36588\n [Z Motor]
17-03-17 17:42:56.428 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:42:56.438 -07 000000610 INF: FPGA: 'ZDACW 36588' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:56.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:56.438 -07 000000569 INF: FPGA: Recv ZDACR 36588
17-03-17 17:42:56.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:56.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:42:56.518 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:42:56.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:42:56.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:56.598 -07 000000486 INF: FPGA: Recv ZSGSRD 35363
17-03-17 17:42:56.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:56.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:56.608 -07 000000569 INF: FPGA: Recv ZSGSRD 35365
17-03-17 17:42:56.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:56.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:56.618 -07 000000576 INF: FPGA: Recv ZSGSRD 35364
17-03-17 17:42:56.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:56.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:56.628 -07 000000576 INF: FPGA: Recv ZSGSRD 35355
17-03-17 17:42:56.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:56.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:56.638 -07 000000486 INF: FPGA: Recv ZSGSRD 35362
17-03-17 17:42:56.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:56.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:56.648 -07 000000486 INF: FPGA: Recv ZSGSRD 35372
17-03-17 17:42:56.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:56.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:56.658 -07 000000486 INF: FPGA: Recv ZSGSRD 35362
17-03-17 17:42:56.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:56.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:56.668 -07 000000569 INF: FPGA: Recv ZSGSRD 35368
17-03-17 17:42:56.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:56.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:56.678 -07 000000486 INF: FPGA: Recv ZSGSRD 35366
17-03-17 17:42:56.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:56.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:56.688 -07 000000486 INF: FPGA: Recv ZSGSRD 35360
17-03-17 17:42:56.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:56.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:56.698 -07 000000569 INF: FPGA: Recv ZPIEZORD 30985
17-03-17 17:42:56.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:56.708 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.583 V. Piezo Error = -9.6 V.
17-03-17 17:42:56.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35364 (-166.6 uncal um), Error = 0.8 uncal um, Median = 35364 (-166.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35355 (-166.6 uncal um), Max = 35372 (-166.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:42:56.708 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35364, posNoise = 8, negNoise = 9
17-03-17 17:42:56.708 -07 000000610 INF: Z Motor: After move to -0.167489, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:56.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:42:56.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:56.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:56.708 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:56.708 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:56.708 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:42:56.708 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:56.708 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:42:56.708 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:42:56.708 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:42:56.708 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:42:56.708 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:42:56.708 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:42:56.718 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:42:56.718 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:42:56.718 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:42:56.718 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:42:56.718 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:42:56.718 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:42:56.728 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:42:56.728 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 17:42:56.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36765 150\n [Camera]
17-03-17 17:42:56.928 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 17:42:57.318 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:42:57.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:42:57.318 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:57.318 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:57.318 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1084919912, 0x0, 391868352) start.
17-03-17 17:42:57.318 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:42:57.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:42:57.318 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:57.318 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:57.318 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1120342176, 0x0, 418435064) start.
17-03-17 17:42:57.508 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36765 775
17-03-17 17:42:57.658 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:42:57.698 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1084919912, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:42:57.698 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:42:57.698 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:57.698 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 1120342176, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:42:57.698 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:42:57.698 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:57.708 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:42:57.708 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 17:42:57.708 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:57.708 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:42:57.848 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:42:57.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:42:57.848 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:42:57.968 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:42:57.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:42:57.968 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:42:57.968 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:42:57.968 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:42:57.968 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:42:57.968 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:42:58.038 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:42:58.038 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:42:58.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36765 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:42:58.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:42:58.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.167509190192369. ------
17-03-17 17:42:58.048 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:42:58.048 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17398 mm
17-03-17 17:42:58.048 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:42:58.048 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:42:58.048 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 17:42:58.048 -07 000000459 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 17:42:58.048 -07 000000569 INF: Z Motor: Entering MoveAbsStepped (DAC = 38006, sync = True, waitForSettling = False)
17-03-17 17:42:58.048 -07 000000569 INF: Z Motor: Moving to -0.173980 mm, started at -0.167509 mm, distance = -6.47 um
17-03-17 17:42:58.058 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:42:58.058 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:58.058 -07 000000501 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:42:58.068 -07 000000569 INF: FPGA: Xmit ZDACW 38006\n [Z Motor]
17-03-17 17:42:58.068 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:42:58.068 -07 000000459 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:58.068 -07 000000459 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:42:58.068 -07 000000459 INF: Y Motor: Moving 1342 steps-18
17-03-17 17:42:58.068 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:42:58.078 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:42:58.078 -07 000000569 INF: FPGA: 'ZDACW 38006' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:42:58.088 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:42:58.098 -07 000000569 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:42:58.098 -07 000000501 INF: FPGA: Recv ZDACR 38006
17-03-17 17:42:58.108 -07 000000569 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:42:58.108 -07 000000569 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 17:42:58.278 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:42:58.278 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:42:58.348 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:42:58.348 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:42:58.348 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:58.348 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:42:58.348 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:42:58.348 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:42:58.358 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:58.358 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-17 17:42:58.358 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:42:58.368 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:42:58.458 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 17:42:58.458 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 17:42:58.488 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:58.498 -07 000000501 INF: FPGA: Recv YRDPOS 144771
17-03-17 17:42:58.498 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:42:58.498 -07 000000459 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:58.498 -07 000000459 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 17:42:58.498 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 17:42:59.448 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:42:59.448 -07 000000501 INF: FPGA: Recv YRDPOS 144771
17-03-17 17:42:59.458 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:42:59.458 -07 000000459 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:42:59.478 -07 000000459 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:42:59.478 -07 000000459 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:42:59.478 -07 000000459 INF: Y Motor: Moved to 70.6890 after 1427 ms (table move)
17-03-17 17:42:59.478 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173980 mm (DAC = 38006)
17-03-17 17:42:59.478 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:59.478 -07 000000623 INF: FPGA: Recv ZSGSRD 36375
17-03-17 17:42:59.488 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:42:59.488 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:59.488 -07 000000608 INF: FPGA: Recv ZSGSRD 36370
17-03-17 17:42:59.498 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:59.498 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:59.498 -07 000000618 INF: FPGA: Recv ZSGSRD 36364
17-03-17 17:42:59.508 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:59.508 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:59.508 -07 000000551 INF: FPGA: Recv ZSGSRD 36369
17-03-17 17:42:59.518 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:59.518 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:59.518 -07 000000486 INF: FPGA: Recv ZSGSRD 36374
17-03-17 17:42:59.528 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:59.528 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:59.528 -07 000000459 INF: FPGA: Recv ZSGSRD 36371
17-03-17 17:42:59.538 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:59.538 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:59.538 -07 000000627 INF: FPGA: Recv ZSGSRD 36373
17-03-17 17:42:59.548 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:59.548 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:59.548 -07 000000569 INF: FPGA: Recv ZSGSRD 36374
17-03-17 17:42:59.558 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:42:59.558 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:59.558 -07 000000627 INF: FPGA: Recv ZSGSRD 36371
17-03-17 17:42:59.568 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:59.568 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:42:59.568 -07 000000623 INF: FPGA: Recv ZSGSRD 36369
17-03-17 17:42:59.578 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:59.578 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:42:59.578 -07 000000486 INF: FPGA: Recv ZPIEZORD 32365
17-03-17 17:42:59.588 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:42:59.588 -07 000000433 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.799 V. Piezo Error = -8.9 V.
17-03-17 17:42:59.588 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36371 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36371 (-173.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36364 (-173.0 uncal um), Max = 36375 (-173.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:42:59.588 -07 000000433 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36371, posNoise = 4, negNoise = 7
17-03-17 17:42:59.588 -07 000000433 INF: Z Motor: After move to -0.173980, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:42:59.588 -07 000000433 INF: Z Motor: Settle wait time = 1429 ms, measure time = 105 ms (allowed 150 ms), total time = 1534 ms
17-03-17 17:42:59.588 -07 000000433 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 17:42:59.638 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 17:42:59.638 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:42:59.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:42:59.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:42:59.638 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:42:59.638 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:42:59.638 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:42:59.638 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:42:59.638 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:42:59.638 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:42:59.648 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:42:59.648 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:42:59.658 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 17:42:59.658 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 17:42:59.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:42:59.698 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:42:59.898 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:42:59.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:42:59.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:42:59.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:42:59.938 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:42:59.938 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 17:42:59.938 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:43:00.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:43:00.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:00.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:43:00.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:43:00.038 -07 000000382 INF: Autofocus start
17-03-17 17:43:00.038 -07 000000382 INF: MeasureProfile start
17-03-17 17:43:00.048 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:00.048 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:00.058 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 17:43:00.058 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:43:00.058 -07 000000382 INF: MeasureProfile done
17-03-17 17:43:00.058 -07 000000382 INF: X=0  Z correction [um]=-0.0713522
17-03-17 17:43:00.058 -07 000000382 INF: Autofocus finished
17-03-17 17:43:00.258 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:43:00.258 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 17:43:00.258 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.173978371819123. ----------
17-03-17 17:43:00.268 -07 000000610 INF: Cycle	4	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:43:00.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36503, sync = True, waitForSettling = True)
17-03-17 17:43:00.268 -07 000000610 INF: Z Motor: Moving to -0.167100 mm, started at -0.173978 mm, distance = 6.88 um
17-03-17 17:43:00.268 -07 000000610 INF: FPGA: Xmit ZDACW 36503\n [Z Motor]
17-03-17 17:43:00.268 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:43:00.278 -07 000000610 INF: FPGA: 'ZDACW 36503' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:43:00.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:00.278 -07 000000486 INF: FPGA: Recv ZDACR 36503
17-03-17 17:43:00.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:00.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:43:00.358 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.959467,
17-03-17 17:43:00.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:00.438 -07 000000569 INF: FPGA: Recv ZSGSRD 35301
17-03-17 17:43:00.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:00.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:00.448 -07 000000569 INF: FPGA: Recv ZSGSRD 35302
17-03-17 17:43:00.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:00.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:00.458 -07 000000569 INF: FPGA: Recv ZSGSRD 35298
17-03-17 17:43:00.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:00.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:00.468 -07 000000569 INF: FPGA: Recv ZSGSRD 35297
17-03-17 17:43:00.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:00.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:00.478 -07 000000569 INF: FPGA: Recv ZSGSRD 35303
17-03-17 17:43:00.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:00.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:00.488 -07 000000561 INF: FPGA: Recv ZSGSRD 35305
17-03-17 17:43:00.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:00.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:00.498 -07 000000561 INF: FPGA: Recv ZSGSRD 35303
17-03-17 17:43:00.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:00.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:00.508 -07 000000608 INF: FPGA: Recv ZSGSRD 35302
17-03-17 17:43:00.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:00.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:00.518 -07 000000561 INF: FPGA: Recv ZSGSRD 35298
17-03-17 17:43:00.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:00.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:00.528 -07 000000561 INF: FPGA: Recv ZSGSRD 35299
17-03-17 17:43:00.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:00.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:00.538 -07 000000561 INF: FPGA: Recv ZPIEZORD 30913
17-03-17 17:43:00.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:00.548 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.570 V. Piezo Error = -9.7 V.
17-03-17 17:43:00.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35301 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35302 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35297 (-166.2 uncal um), Max = 35305 (-166.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:43:00.548 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35301, posNoise = 4, negNoise = 4
17-03-17 17:43:00.548 -07 000000610 INF: Z Motor: After move to -0.167100, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:00.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:43:00.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:00.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:00.548 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:00.548 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:43:00.548 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:00.548 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:00.548 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:43:00.548 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:43:00.548 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:43:00.548 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:43:00.548 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:43:00.548 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:43:00.558 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:43:00.558 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:43:00.558 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:43:00.558 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:43:00.568 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 17:43:00.568 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 17:43:00.568 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 17:43:00.568 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:43:00.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36679 150\n [Camera]
17-03-17 17:43:00.768 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:43:01.158 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:43:01.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:43:01.168 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:01.168 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:01.168 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 17:43:01.168 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:43:01.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:43:01.168 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:01.168 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:01.168 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 17:43:01.358 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36679 775
17-03-17 17:43:01.498 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:43:01.518 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:43:01.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:43:01.538 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 17:43:01.538 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:43:01.538 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:01.538 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:43:01.538 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 17:43:01.538 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:01.548 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:01.658 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 116 ms.
17-03-17 17:43:01.658 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 495 ms.
17-03-17 17:43:01.668 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-17 17:43:01.688 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:43:01.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:43:01.688 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:01.698 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:43:01.698 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:01.698 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:43:01.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:43:01.698 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:01.698 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:01.698 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:43:01.878 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:43:01.888 -07 000000569 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:43:01.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36679 150' command took 2 ms to send, 1300 ms to get response, and 1312 ms overall
17-03-17 17:43:01.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:43:01.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.167104464827439. ------
17-03-17 17:43:01.888 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:01.888 -07 000000608 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17385 mm
17-03-17 17:43:01.888 -07 000000608 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:43:01.898 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:01.898 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:43:01.898 -07 000000569 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 17:43:01.898 -07 000000569 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 17:43:01.898 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:43:01.898 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37978, sync = True, waitForSettling = False)
17-03-17 17:43:01.898 -07 000000551 INF: Z Motor: Moving to -0.173852 mm, started at -0.167104 mm, distance = -6.75 um
17-03-17 17:43:01.908 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:01.908 -07 000000438 INF: FPGA: Recv YRDPOS 144771
17-03-17 17:43:01.918 -07 000000551 INF: FPGA: Xmit ZDACW 37978\n [Z Motor]
17-03-17 17:43:01.918 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 17:43:01.918 -07 000000569 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:01.918 -07 000000569 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:43:01.918 -07 000000569 INF: Y Motor: Moving 1350 steps-28
17-03-17 17:43:01.918 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 17:43:01.928 -07 000000551 INF: FPGA: 'ZDACW 37978' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 17:43:01.928 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:01.928 -07 000000475 INF: FPGA: Recv ZDACR 37978
17-03-17 17:43:01.938 -07 000000569 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:43:01.938 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:01.938 -07 000000551 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 17:43:02.088 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 17:43:02.088 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:43:02.088 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:02.088 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 17:43:02.088 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:43:02.088 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:02.088 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:02.088 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 17:43:02.088 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:02.098 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 17:43:02.098 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:43:02.098 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 17:43:02.308 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 17:43:02.308 -07 000000569 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:43:02.338 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:02.348 -07 000000618 INF: FPGA: Recv YRDPOS 146472
17-03-17 17:43:02.358 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:02.358 -07 000000569 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:02.358 -07 000000569 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:43:02.358 -07 000000569 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 17:43:03.308 -07 000000569 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:03.308 -07 000000475 INF: FPGA: Recv YRDPOS 146472
17-03-17 17:43:03.318 -07 000000569 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:03.318 -07 000000569 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:03.328 -07 000000569 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:43:03.328 -07 000000569 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:43:03.338 -07 000000569 INF: Y Motor: Moved to 71.5195 after 1438 ms (table move)
17-03-17 17:43:03.338 -07 000000608 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173852 mm (DAC = 37978)
17-03-17 17:43:03.338 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:03.338 -07 000000459 INF: FPGA: Recv ZSGSRD 36356
17-03-17 17:43:03.348 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:43:03.348 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:03.348 -07 000000576 INF: FPGA: Recv ZSGSRD 36352
17-03-17 17:43:03.358 -07 000000608 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:03.358 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:03.358 -07 000000569 INF: FPGA: Recv ZSGSRD 36353
17-03-17 17:43:03.368 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:03.368 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:03.368 -07 000000576 INF: FPGA: Recv ZSGSRD 36347
17-03-17 17:43:03.378 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:03.378 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:03.378 -07 000000569 INF: FPGA: Recv ZSGSRD 36356
17-03-17 17:43:03.388 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:03.388 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:03.388 -07 000000576 INF: FPGA: Recv ZSGSRD 36355
17-03-17 17:43:03.398 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:03.398 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:03.398 -07 000000569 INF: FPGA: Recv ZSGSRD 36360
17-03-17 17:43:03.408 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:03.408 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:03.408 -07 000000551 INF: FPGA: Recv ZSGSRD 36354
17-03-17 17:43:03.418 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:03.418 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:03.418 -07 000000475 INF: FPGA: Recv ZSGSRD 36350
17-03-17 17:43:03.428 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:03.428 -07 000000608 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:03.428 -07 000000438 INF: FPGA: Recv ZSGSRD 36352
17-03-17 17:43:03.438 -07 000000608 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:03.438 -07 000000608 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:03.438 -07 000000551 INF: FPGA: Recv ZPIEZORD 32335
17-03-17 17:43:03.448 -07 000000608 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:03.448 -07 000000608 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.795 V. Piezo Error = -8.9 V.
17-03-17 17:43:03.448 -07 000000608 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36354 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36354 (-173.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36347 (-172.9 uncal um), Max = 36360 (-173.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:43:03.448 -07 000000608 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36354, posNoise = 6, negNoise = 7
17-03-17 17:43:03.448 -07 000000608 INF: Z Motor: After move to -0.173852, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:03.448 -07 000000608 INF: Z Motor: Settle wait time = 1441 ms, measure time = 107 ms (allowed 150 ms), total time = 1548 ms
17-03-17 17:43:03.448 -07 000000608 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:43:03.498 -07 000000608 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 17:43:03.498 -07 000000608 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:43:03.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:03.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:03.498 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:03.498 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:03.498 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:43:03.498 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:03.498 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:43:03.498 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:43:03.508 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:43:03.508 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:43:03.518 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:43:03.518 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 17:43:03.518 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:43:03.568 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:43:03.768 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:43:03.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:43:03.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:43:03.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:43:03.808 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:43:03.808 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:43:03.808 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 17:43:03.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 17:43:03.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:03.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:43:03.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 17:43:03.908 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:03.908 -07 000000561 INF: Autofocus start
17-03-17 17:43:03.908 -07 000000561 INF: MeasureProfile start
17-03-17 17:43:03.908 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:03.918 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:43:03.918 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:43:03.918 -07 000000561 INF: MeasureProfile done
17-03-17 17:43:03.918 -07 000000561 INF: X=0  Z correction [um]=-0.0713522
17-03-17 17:43:03.918 -07 000000561 INF: Autofocus finished
17-03-17 17:43:04.118 -07 000000608 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:43:04.118 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:43:04.118 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.173869160212713. ----------
17-03-17 17:43:04.118 -07 000000610 INF: Cycle	4	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:43:04.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36475, sync = True, waitForSettling = True)
17-03-17 17:43:04.128 -07 000000610 INF: Z Motor: Moving to -0.166972 mm, started at -0.173869 mm, distance = 6.90 um
17-03-17 17:43:04.128 -07 000000610 INF: FPGA: Xmit ZDACW 36475\n [Z Motor]
17-03-17 17:43:04.128 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 17:43:04.138 -07 000000610 INF: FPGA: 'ZDACW 36475' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:43:04.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:04.138 -07 000000618 INF: FPGA: Recv ZDACR 36475
17-03-17 17:43:04.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:04.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:43:04.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:04.298 -07 000000623 INF: FPGA: Recv ZSGSRD 35280
17-03-17 17:43:04.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:04.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:04.308 -07 000000569 INF: FPGA: Recv ZSGSRD 35280
17-03-17 17:43:04.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:04.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:04.318 -07 000000623 INF: FPGA: Recv ZSGSRD 35288
17-03-17 17:43:04.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:04.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:04.328 -07 000000551 INF: FPGA: Recv ZSGSRD 35280
17-03-17 17:43:04.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:04.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:04.338 -07 000000501 INF: FPGA: Recv ZSGSRD 35285
17-03-17 17:43:04.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:04.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:04.348 -07 000000623 INF: FPGA: Recv ZSGSRD 35284
17-03-17 17:43:04.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:04.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:04.358 -07 000000623 INF: FPGA: Recv ZSGSRD 35280
17-03-17 17:43:04.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:04.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:04.368 -07 000000623 INF: FPGA: Recv ZSGSRD 35284
17-03-17 17:43:04.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:04.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:04.378 -07 000000623 INF: FPGA: Recv ZSGSRD 35279
17-03-17 17:43:04.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:04.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:04.388 -07 000000623 INF: FPGA: Recv ZSGSRD 35282
17-03-17 17:43:04.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:04.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:04.398 -07 000000623 INF: FPGA: Recv ZPIEZORD 30900
17-03-17 17:43:04.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:04.408 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.566 V. Piezo Error = -9.6 V.
17-03-17 17:43:04.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.0 um, Read 10 ADC samples: Avg = 35282 (-166.1 uncal um), Error = 0.9 uncal um, Median = 35281 (-166.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35279 (-166.1 uncal um), Max = 35288 (-166.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:43:04.408 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35282, posNoise = 6, negNoise = 3
17-03-17 17:43:04.408 -07 000000610 INF: Z Motor: After move to -0.166972, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:04.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:43:04.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:04.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:04.408 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:04.408 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:43:04.408 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:04.408 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:04.408 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:43:04.408 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:43:04.408 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:43:04.408 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:43:04.408 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:43:04.408 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:43:04.408 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:43:04.408 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:43:04.418 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:43:04.418 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:43:04.418 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:43:04.418 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:43:04.428 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:43:04.428 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:43:04.428 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36651 150\n [Camera]
17-03-17 17:43:04.628 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:43:05.018 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:43:05.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:43:05.018 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:05.018 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:05.018 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:43:05.018 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:43:05.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:43:05.018 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:05.018 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:05.018 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 17:43:05.208 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36651 775
17-03-17 17:43:05.358 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 17:43:05.398 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:43:05.398 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:43:05.398 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:05.398 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:43:05.398 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:43:05.398 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:05.408 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:05.408 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:43:05.408 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:05.408 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:43:05.548 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:43:05.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:43:05.548 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:05.548 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:43:05.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:43:05.548 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:05.548 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 17:43:05.548 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:05.548 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:05.548 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 17:43:05.718 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.986717,
17-03-17 17:43:05.738 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:43:05.738 -07 000000608 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:43:05.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36651 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-17 17:43:05.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:43:05.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.166982404796745. ------
17-03-17 17:43:05.748 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17289 mm
17-03-17 17:43:05.748 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:43:05.748 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37767, sync = True, waitForSettling = False)
17-03-17 17:43:05.748 -07 000000618 INF: Z Motor: Moving to -0.172886 mm, started at -0.166982 mm, distance = -5.90 um
17-03-17 17:43:05.748 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 17:43:05.758 -07 000000433 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 17:43:05.758 -07 000000618 INF: FPGA: Xmit ZDACW 37767\n [Z Motor]
17-03-17 17:43:05.758 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:43:05.768 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:05.768 -07 000000618 INF: FPGA: 'ZDACW 37767' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:05.768 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:05.778 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 17:43:05.778 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:05.778 -07 000000608 INF: FPGA: Recv YRDPOS 146473
17-03-17 17:43:05.788 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:05.788 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:43:05.788 -07 000000433 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:05.788 -07 000000576 INF: FPGA: Recv ZDACR 37767
17-03-17 17:43:05.788 -07 000000433 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:43:05.788 -07 000000433 INF: Y Motor: Moving 1348 steps-27
17-03-17 17:43:05.798 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:43:05.798 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:43:05.798 -07 000000618 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 17:43:05.808 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:43:05.928 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:43:05.928 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:43:05.928 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:05.928 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:43:05.928 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:43:05.928 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:05.928 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:43:05.938 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:43:05.938 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 17:43:05.938 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:43:05.998 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:43:05.998 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:43:06.178 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 17:43:06.178 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 17:43:06.218 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:06.218 -07 000000623 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:43:06.228 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:43:06.228 -07 000000433 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:06.228 -07 000000433 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 17:43:06.228 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.843 mm, average velocity = 2.140 mm/sec
17-03-17 17:43:06.528 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:43:06.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:43:07.178 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:07.178 -07 000000623 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:43:07.188 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:07.188 -07 000000433 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:07.198 -07 000000433 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:43:07.198 -07 000000433 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:43:07.198 -07 000000433 INF: Y Motor: Moved to 72.3501 after 1449 ms (table move)
17-03-17 17:43:07.208 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172886 mm (DAC = 37767)
17-03-17 17:43:07.208 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:07.208 -07 000000433 INF: FPGA: Recv ZSGSRD 36204
17-03-17 17:43:07.218 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:43:07.218 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:07.218 -07 000000382 INF: FPGA: Recv ZSGSRD 36197
17-03-17 17:43:07.228 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:07.228 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:07.228 -07 000000382 INF: FPGA: Recv ZSGSRD 36197
17-03-17 17:43:07.238 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:07.238 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:07.238 -07 000000433 INF: FPGA: Recv ZSGSRD 36200
17-03-17 17:43:07.248 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:07.248 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:07.248 -07 000000433 INF: FPGA: Recv ZSGSRD 36205
17-03-17 17:43:07.258 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:07.258 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:07.258 -07 000000433 INF: FPGA: Recv ZSGSRD 36208
17-03-17 17:43:07.268 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:07.268 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:07.268 -07 000000382 INF: FPGA: Recv ZSGSRD 36198
17-03-17 17:43:07.278 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:07.278 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:07.278 -07 000000501 INF: FPGA: Recv ZSGSRD 36210
17-03-17 17:43:07.288 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:07.288 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:07.288 -07 000000475 INF: FPGA: Recv ZSGSRD 36198
17-03-17 17:43:07.298 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:07.298 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:07.298 -07 000000382 INF: FPGA: Recv ZSGSRD 36203
17-03-17 17:43:07.308 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:07.308 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:07.308 -07 000000551 INF: FPGA: Recv ZPIEZORD 32143
17-03-17 17:43:07.318 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:07.318 -07 000000486 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.763 V. Piezo Error = -9.0 V.
17-03-17 17:43:07.318 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36202 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36202 (-172.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36197 (-172.0 uncal um), Max = 36210 (-172.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:43:07.318 -07 000000486 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36202, posNoise = 8, negNoise = 5
17-03-17 17:43:07.318 -07 000000486 INF: Z Motor: After move to -0.172886, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:07.318 -07 000000486 INF: Z Motor: Settle wait time = 1454 ms, measure time = 106 ms (allowed 150 ms), total time = 1560 ms
17-03-17 17:43:07.318 -07 000000486 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:43:07.368 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-17 17:43:07.368 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:43:07.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:07.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:07.368 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:07.368 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:07.368 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:43:07.368 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:07.368 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:43:07.378 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:43:07.378 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 17:43:07.378 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:43:07.388 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 17:43:07.388 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:43:07.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:43:07.438 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:43:07.638 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:43:07.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:43:07.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:43:07.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) start.
17-03-17 17:43:07.678 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:43:07.678 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 17:43:07.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 17:43:07.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:43:07.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:07.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:43:07.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:43:07.778 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:07.778 -07 000000551 INF: Autofocus start
17-03-17 17:43:07.778 -07 000000551 INF: MeasureProfile start
17-03-17 17:43:07.788 -07 000000551 INF: MeasureProfile done
17-03-17 17:43:07.788 -07 000000551 INF: X=64  Z correction [um]=0.2557664
17-03-17 17:43:07.788 -07 000000551 INF: Autofocus finished
17-03-17 17:43:07.788 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:07.788 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 7 ms to get response, and 14 ms overall
17-03-17 17:43:07.788 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:43:07.998 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:43:07.998 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 201 ms to get response, and 202 ms overall
17-03-17 17:43:07.998 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.172892679967165. ----------
17-03-17 17:43:07.998 -07 000000610 INF: Cycle	4	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:43:07.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36336, sync = True, waitForSettling = True)
17-03-17 17:43:07.998 -07 000000610 INF: Z Motor: Moving to -0.166336 mm, started at -0.172893 mm, distance = 6.56 um
17-03-17 17:43:08.008 -07 000000610 INF: FPGA: Xmit ZDACW 36336\n [Z Motor]
17-03-17 17:43:08.008 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 17:43:08.018 -07 000000610 INF: FPGA: 'ZDACW 36336' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:08.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:08.018 -07 000000576 INF: FPGA: Recv ZDACR 36336
17-03-17 17:43:08.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:08.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:43:08.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:08.178 -07 000000551 INF: FPGA: Recv ZSGSRD 35183
17-03-17 17:43:08.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:08.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:08.188 -07 000000576 INF: FPGA: Recv ZSGSRD 35184
17-03-17 17:43:08.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:08.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:08.198 -07 000000576 INF: FPGA: Recv ZSGSRD 35183
17-03-17 17:43:08.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:08.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:08.208 -07 000000576 INF: FPGA: Recv ZSGSRD 35183
17-03-17 17:43:08.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:08.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:08.218 -07 000000576 INF: FPGA: Recv ZSGSRD 35186
17-03-17 17:43:08.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:08.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:08.228 -07 000000576 INF: FPGA: Recv ZSGSRD 35182
17-03-17 17:43:08.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:08.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:08.238 -07 000000576 INF: FPGA: Recv ZSGSRD 35183
17-03-17 17:43:08.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:08.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:08.248 -07 000000551 INF: FPGA: Recv ZSGSRD 35181
17-03-17 17:43:08.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:08.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:08.258 -07 000000576 INF: FPGA: Recv ZSGSRD 35182
17-03-17 17:43:08.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:08.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:08.268 -07 000000551 INF: FPGA: Recv ZSGSRD 35186
17-03-17 17:43:08.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:08.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:08.278 -07 000000551 INF: FPGA: Recv ZPIEZORD 30783
17-03-17 17:43:08.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:08.288 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.545 V. Piezo Error = -9.7 V.
17-03-17 17:43:08.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35183 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35183 (-165.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35181 (-165.5 uncal um), Max = 35186 (-165.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 17:43:08.288 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35183, posNoise = 3, negNoise = 2
17-03-17 17:43:08.288 -07 000000610 INF: Z Motor: After move to -0.166336, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:08.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:43:08.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:08.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:08.288 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:08.288 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:08.288 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:43:08.288 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:08.288 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:43:08.288 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:43:08.298 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:43:08.298 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:43:08.298 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:43:08.298 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:43:08.298 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:43:08.298 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:43:08.298 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:43:08.298 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:43:08.308 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:43:08.308 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:43:08.308 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:43:08.308 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:43:08.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36512 150\n [Camera]
17-03-17 17:43:08.508 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:43:08.898 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:43:08.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:43:08.898 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:08.898 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:08.898 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 17:43:08.898 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:43:08.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:43:09.018 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:09.018 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:09.018 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 17:43:09.278 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:43:09.278 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:43:09.278 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:09.288 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:43:09.288 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:43:09.318 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36512 775
17-03-17 17:43:09.318 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:43:09.398 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:43:09.398 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:43:09.398 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:09.398 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:43:09.408 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:43:09.428 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1116
17-03-17 17:43:09.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1116
17-03-17 17:43:09.438 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:09.438 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1116
17-03-17 17:43:09.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1116
17-03-17 17:43:09.438 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:09.448 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:09.448 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 17:43:09.448 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:09.448 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 17:43:09.618 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:43:09.618 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:43:09.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36512 150' command took 2 ms to send, 1308 ms to get response, and 1312 ms overall
17-03-17 17:43:09.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:43:09.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.166346407794711. ------
17-03-17 17:43:09.628 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:09.628 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17299 mm
17-03-17 17:43:09.628 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:43:09.628 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:09.628 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37790, sync = True, waitForSettling = False)
17-03-17 17:43:09.628 -07 000000382 INF: Z Motor: Moving to -0.172992 mm, started at -0.166346 mm, distance = -6.65 um
17-03-17 17:43:09.628 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 17:43:09.628 -07 000000627 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 17:43:09.638 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:43:09.638 -07 000000382 INF: FPGA: Xmit ZDACW 37790\n [Z Motor]
17-03-17 17:43:09.638 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:43:09.648 -07 000000382 INF: FPGA: 'ZDACW 37790' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:09.648 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:43:09.658 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:09.658 -07 000000438 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:43:09.668 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:09.668 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 17:43:09.668 -07 000000627 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:09.668 -07 000000627 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:43:09.668 -07 000000627 INF: Y Motor: Moving 1348 steps-26
17-03-17 17:43:09.668 -07 000000623 INF: FPGA: Recv ZDACR 37790
17-03-17 17:43:09.678 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:43:09.678 -07 000000382 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 17:43:09.678 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:43:09.818 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:43:09.818 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 17:43:09.818 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:09.828 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:43:09.828 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:43:09.828 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:43:09.828 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:09.828 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:43:09.828 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:43:09.828 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:43:09.848 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:43:09.848 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 17:43:10.048 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 17:43:10.048 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 17:43:10.078 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:10.088 -07 000000501 INF: FPGA: Recv YRDPOS 149865
17-03-17 17:43:10.088 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:43:10.088 -07 000000627 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:10.088 -07 000000627 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 17:43:10.088 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.171 mm/sec
17-03-17 17:43:11.038 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:11.038 -07 000000475 INF: FPGA: Recv YRDPOS 149865
17-03-17 17:43:11.048 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:11.048 -07 000000627 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:11.058 -07 000000627 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:43:11.058 -07 000000627 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:43:11.058 -07 000000627 INF: Y Motor: Moved to 73.1763 after 1429 ms (table move)
17-03-17 17:43:11.068 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172992 mm (DAC = 37790)
17-03-17 17:43:11.078 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:11.078 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.971733,
17-03-17 17:43:11.078 -07 000000475 INF: FPGA: Recv ZSGSRD 36217
17-03-17 17:43:11.088 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:43:11.088 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:11.088 -07 000000382 INF: FPGA: Recv ZSGSRD 36211
17-03-17 17:43:11.098 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:11.118 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:11.118 -07 000000438 INF: FPGA: Recv ZSGSRD 36222
17-03-17 17:43:11.128 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:43:11.138 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:11.138 -07 000000618 INF: FPGA: Recv ZSGSRD 36222
17-03-17 17:43:11.148 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:43:11.148 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:11.148 -07 000000618 INF: FPGA: Recv ZSGSRD 36215
17-03-17 17:43:11.158 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:11.168 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:11.168 -07 000000627 INF: FPGA: Recv ZSGSRD 36217
17-03-17 17:43:11.178 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:43:11.178 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:11.178 -07 000000627 INF: FPGA: Recv ZSGSRD 36214
17-03-17 17:43:11.188 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:11.188 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:11.188 -07 000000627 INF: FPGA: Recv ZSGSRD 36222
17-03-17 17:43:11.198 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:11.198 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:11.198 -07 000000382 INF: FPGA: Recv ZSGSRD 36223
17-03-17 17:43:11.208 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:11.208 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:11.208 -07 000000627 INF: FPGA: Recv ZSGSRD 36224
17-03-17 17:43:11.218 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:11.218 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:11.218 -07 000000627 INF: FPGA: Recv ZPIEZORD 32170
17-03-17 17:43:11.228 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:11.228 -07 000000551 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.766 V. Piezo Error = -8.9 V.
17-03-17 17:43:11.228 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36219 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36220 (-172.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36211 (-172.1 uncal um), Max = 36224 (-172.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:43:11.228 -07 000000551 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36219, posNoise = 5, negNoise = 8
17-03-17 17:43:11.228 -07 000000551 INF: Z Motor: After move to -0.172992, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:11.228 -07 000000551 INF: Z Motor: Settle wait time = 1435 ms, measure time = 156 ms (allowed 150 ms), total time = 1591 ms
17-03-17 17:43:11.228 -07 000000551 INF: Z Motor: Warning: Actual position measuring time = 156 ms, longer than max expected time of 150 ms
17-03-17 17:43:11.228 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 17:43:11.228 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:43:11.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:11.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:11.228 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:11.228 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:43:11.228 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:11.228 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:11.228 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:43:11.228 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:43:11.238 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:43:11.238 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:43:11.248 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 17:43:11.248 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 17:43:11.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:43:11.298 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:43:11.488 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:43:11.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:43:11.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:43:11.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 17:43:11.528 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:43:11.528 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:43:11.528 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 17:43:11.538 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 17:43:11.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 163 ms.
17-03-17 17:43:11.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:11.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:43:11.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 166 ms.
17-03-17 17:43:11.668 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:43:11.758 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:12.328 -07 000000433 INF: Autofocus start
17-03-17 17:43:12.328 -07 000000433 INF: MeasureProfile start
17-03-17 17:43:12.338 -07 000000433 INF: MeasureProfile done
17-03-17 17:43:12.338 -07 000000433 INF: X=-32  Z correction [um]=-0.2344
17-03-17 17:43:12.338 -07 000000433 INF: Autofocus finished
17-03-17 17:43:12.338 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:12.338 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 574 ms to get response, and 581 ms overall
17-03-17 17:43:12.348 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:43:12.548 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:43:12.548 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 3 ms to send, 195 ms to get response, and 210 ms overall
17-03-17 17:43:12.548 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.173001891573575. ----------
17-03-17 17:43:12.558 -07 000000610 INF: Cycle	4	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:43:12.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36252, sync = True, waitForSettling = True)
17-03-17 17:43:12.558 -07 000000610 INF: Z Motor: Moving to -0.165951 mm, started at -0.173002 mm, distance = 7.05 um
17-03-17 17:43:12.558 -07 000000610 INF: FPGA: Xmit ZDACW 36252\n [Z Motor]
17-03-17 17:43:12.558 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 17:43:12.568 -07 000000610 INF: FPGA: 'ZDACW 36252' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:43:12.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:12.568 -07 000000433 INF: FPGA: Recv ZDACR 36252
17-03-17 17:43:12.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:12.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:43:12.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:12.728 -07 000000501 INF: FPGA: Recv ZSGSRD 35127
17-03-17 17:43:12.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:12.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:12.738 -07 000000433 INF: FPGA: Recv ZSGSRD 35127
17-03-17 17:43:12.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:12.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:12.748 -07 000000501 INF: FPGA: Recv ZSGSRD 35124
17-03-17 17:43:12.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:12.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:12.758 -07 000000608 INF: FPGA: Recv ZSGSRD 35122
17-03-17 17:43:12.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:12.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:12.768 -07 000000433 INF: FPGA: Recv ZSGSRD 35124
17-03-17 17:43:12.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:12.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:12.778 -07 000000608 INF: FPGA: Recv ZSGSRD 35125
17-03-17 17:43:12.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:12.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:12.788 -07 000000501 INF: FPGA: Recv ZSGSRD 35125
17-03-17 17:43:12.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:12.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:12.798 -07 000000608 INF: FPGA: Recv ZSGSRD 35124
17-03-17 17:43:12.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:12.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:12.808 -07 000000433 INF: FPGA: Recv ZSGSRD 35126
17-03-17 17:43:12.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:12.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:12.818 -07 000000561 INF: FPGA: Recv ZSGSRD 35125
17-03-17 17:43:12.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:12.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:12.828 -07 000000501 INF: FPGA: Recv ZPIEZORD 30722
17-03-17 17:43:12.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:12.838 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.532 V. Piezo Error = -9.7 V.
17-03-17 17:43:12.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35125 (-165.1 uncal um), Error = 0.8 uncal um, Median = 35125 (-165.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35122 (-165.1 uncal um), Max = 35127 (-165.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:43:12.838 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35125, posNoise = 2, negNoise = 3
17-03-17 17:43:12.838 -07 000000610 INF: Z Motor: After move to -0.165951, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:12.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:43:12.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:12.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:12.838 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:12.838 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:12.838 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:43:12.838 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:12.838 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:43:12.838 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:43:12.838 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:43:12.838 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:43:12.838 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:43:12.838 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:43:12.848 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:43:12.848 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:43:12.848 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:43:12.848 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:43:12.848 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:43:12.848 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:43:12.848 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:43:12.848 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:43:12.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36428 150\n [Camera]
17-03-17 17:43:13.058 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:43:13.448 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:43:13.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:43:13.448 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:13.448 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:13.448 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:43:13.448 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:43:13.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:43:13.448 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:13.448 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:13.448 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-17 17:43:13.638 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36428 775
17-03-17 17:43:13.788 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:43:13.828 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:43:13.828 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:43:13.828 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:13.828 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:43:13.828 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:43:13.828 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:13.828 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:13.828 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:43:13.828 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:13.838 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:43:13.978 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:43:13.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:43:13.978 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:13.978 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:13.978 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:43:13.978 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:43:13.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:43:13.978 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:13.988 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:13.988 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 17:43:14.168 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:43:14.168 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:43:14.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36428 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-17 17:43:14.178 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:43:14.178 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.165973803490489. ------
17-03-17 17:43:14.178 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:14.178 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17228 mm
17-03-17 17:43:14.178 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:43:14.178 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:14.178 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 17:43:14.178 -07 000000561 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 17:43:14.178 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 37635, sync = True, waitForSettling = False)
17-03-17 17:43:14.178 -07 000000433 INF: Z Motor: Moving to -0.172282 mm, started at -0.165974 mm, distance = -6.31 um
17-03-17 17:43:14.188 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:43:14.188 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:14.188 -07 000000623 INF: FPGA: Recv YRDPOS 149866
17-03-17 17:43:14.198 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:43:14.198 -07 000000561 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:14.198 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:43:14.198 -07 000000561 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:43:14.198 -07 000000561 INF: Y Motor: Moving 1353 steps-33
17-03-17 17:43:14.208 -07 000000433 INF: FPGA: Xmit ZDACW 37635\n [Z Motor]
17-03-17 17:43:14.208 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:43:14.218 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:43:14.218 -07 000000433 INF: FPGA: 'ZDACW 37635' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 17:43:14.228 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:14.228 -07 000000438 INF: FPGA: Recv ZDACR 37635
17-03-17 17:43:14.238 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:43:14.238 -07 000000433 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 17:43:14.368 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 17:43:14.368 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:43:14.368 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:14.368 -07 000000608 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 17:43:14.368 -07 000000608 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 17:43:14.368 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:14.368 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:14.368 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:43:14.368 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:14.378 -07 000000608 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:43:14.398 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:43:14.398 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 17:43:14.588 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 17:43:14.588 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 17:43:14.618 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:14.618 -07 000000623 INF: FPGA: Recv YRDPOS 151569
17-03-17 17:43:14.628 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:43:14.628 -07 000000561 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:14.628 -07 000000561 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 17:43:14.628 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.846 mm, average velocity = 2.143 mm/sec
17-03-17 17:43:15.578 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:15.578 -07 000000486 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:43:15.588 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:15.588 -07 000000561 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:15.598 -07 000000561 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:43:15.598 -07 000000561 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:43:15.598 -07 000000561 INF: Y Motor: Moved to 74.0088 after 1416 ms (table move)
17-03-17 17:43:15.598 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172282 mm (DAC = 37635)
17-03-17 17:43:15.598 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:15.608 -07 000000561 INF: FPGA: Recv ZSGSRD 36118
17-03-17 17:43:15.608 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:43:15.608 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:15.608 -07 000000475 INF: FPGA: Recv ZSGSRD 36115
17-03-17 17:43:15.618 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:15.618 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:15.618 -07 000000475 INF: FPGA: Recv ZSGSRD 36103
17-03-17 17:43:15.628 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:15.628 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:15.628 -07 000000561 INF: FPGA: Recv ZSGSRD 36106
17-03-17 17:43:15.638 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:15.638 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:15.638 -07 000000561 INF: FPGA: Recv ZSGSRD 36106
17-03-17 17:43:15.648 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:15.648 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:15.648 -07 000000561 INF: FPGA: Recv ZSGSRD 36109
17-03-17 17:43:15.658 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:15.658 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:15.658 -07 000000475 INF: FPGA: Recv ZSGSRD 36113
17-03-17 17:43:15.668 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:15.668 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:15.668 -07 000000561 INF: FPGA: Recv ZSGSRD 36110
17-03-17 17:43:15.678 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:15.678 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:15.678 -07 000000475 INF: FPGA: Recv ZSGSRD 36113
17-03-17 17:43:15.688 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:15.688 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:15.688 -07 000000561 INF: FPGA: Recv ZSGSRD 36109
17-03-17 17:43:15.698 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:15.698 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:15.698 -07 000000486 INF: FPGA: Recv ZPIEZORD 32023
17-03-17 17:43:15.708 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:15.708 -07 000000501 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.743 V. Piezo Error = -9.0 V.
17-03-17 17:43:15.708 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36110 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36110 (-171.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36103 (-171.4 uncal um), Max = 36118 (-171.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:43:15.708 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36110, posNoise = 8, negNoise = 7
17-03-17 17:43:15.708 -07 000000501 INF: Z Motor: After move to -0.172282, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:15.708 -07 000000501 INF: Z Motor: Settle wait time = 1419 ms, measure time = 104 ms (allowed 150 ms), total time = 1523 ms
17-03-17 17:43:15.708 -07 000000501 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 17:43:15.758 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 17:43:15.758 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:43:15.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:15.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:15.758 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:15.758 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:15.758 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:43:15.758 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:15.758 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:43:15.758 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:43:15.768 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:43:15.768 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:43:15.768 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:43:15.768 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:43:15.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:43:15.818 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:43:16.018 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:43:16.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:43:16.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:43:16.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-17 17:43:16.058 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:43:16.058 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 17:43:16.058 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:43:16.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:43:16.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:16.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:43:16.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:43:16.158 -07 000000501 INF: Autofocus start
17-03-17 17:43:16.158 -07 000000501 INF: MeasureProfile start
17-03-17 17:43:16.158 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:16.168 -07 000000501 INF: MeasureProfile done
17-03-17 17:43:16.168 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:43:16.168 -07 000000501 INF: Autofocus finished
17-03-17 17:43:16.168 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:16.168 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 9 ms to get response, and 16 ms overall
17-03-17 17:43:16.178 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:43:16.378 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:43:16.378 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 17:43:16.378 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.172301652450123. ----------
17-03-17 17:43:16.378 -07 000000610 INF: Cycle	4	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:43:16.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36149, sync = True, waitForSettling = True)
17-03-17 17:43:16.388 -07 000000610 INF: Z Motor: Moving to -0.165480 mm, started at -0.172302 mm, distance = 6.82 um
17-03-17 17:43:16.388 -07 000000610 INF: FPGA: Xmit ZDACW 36149\n [Z Motor]
17-03-17 17:43:16.388 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:43:16.398 -07 000000610 INF: FPGA: 'ZDACW 36149' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:16.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:16.398 -07 000000486 INF: FPGA: Recv ZDACR 36149
17-03-17 17:43:16.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:16.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:43:16.488 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.986717,
17-03-17 17:43:16.528 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:43:16.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:43:16.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:16.558 -07 000000551 INF: FPGA: Recv ZSGSRD 35049
17-03-17 17:43:16.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:16.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:16.568 -07 000000627 INF: FPGA: Recv ZSGSRD 35054
17-03-17 17:43:16.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:16.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:16.578 -07 000000551 INF: FPGA: Recv ZSGSRD 35053
17-03-17 17:43:16.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:16.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:16.588 -07 000000501 INF: FPGA: Recv ZSGSRD 35050
17-03-17 17:43:16.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:16.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:16.598 -07 000000551 INF: FPGA: Recv ZSGSRD 35053
17-03-17 17:43:16.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:16.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:16.608 -07 000000486 INF: FPGA: Recv ZSGSRD 35052
17-03-17 17:43:16.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:16.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:16.618 -07 000000627 INF: FPGA: Recv ZSGSRD 35055
17-03-17 17:43:16.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:16.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:16.628 -07 000000551 INF: FPGA: Recv ZSGSRD 35045
17-03-17 17:43:16.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:16.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:16.638 -07 000000486 INF: FPGA: Recv ZSGSRD 35046
17-03-17 17:43:16.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:16.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:16.648 -07 000000486 INF: FPGA: Recv ZSGSRD 35055
17-03-17 17:43:16.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:16.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:16.658 -07 000000551 INF: FPGA: Recv ZPIEZORD 30646
17-03-17 17:43:16.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:16.668 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.516 V. Piezo Error = -9.7 V.
17-03-17 17:43:16.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.5 um, Read 10 ADC samples: Avg = 35051 (-164.6 uncal um), Error = 0.8 uncal um, Median = 35052 (-164.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35045 (-164.6 uncal um), Max = 35055 (-164.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:43:16.668 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35051, posNoise = 4, negNoise = 6
17-03-17 17:43:16.668 -07 000000610 INF: Z Motor: After move to -0.165480, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:16.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:43:16.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:16.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:16.668 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:16.668 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:16.668 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:43:16.668 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:16.668 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:43:16.668 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:43:16.668 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:43:16.668 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:43:16.668 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:43:16.668 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:43:16.678 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:43:16.678 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:43:16.678 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:43:16.678 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:43:16.688 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:43:16.688 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:43:16.688 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:43:16.688 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:43:16.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36326 150\n [Camera]
17-03-17 17:43:16.888 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:43:17.278 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:43:17.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:43:17.278 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:17.278 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:17.278 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 17:43:17.278 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:43:17.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:43:17.278 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:17.398 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:17.398 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 17:43:17.468 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36326 775
17-03-17 17:43:17.618 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:43:17.658 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:43:17.658 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 17:43:17.658 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:17.658 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:43:17.658 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:43:17.768 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 17:43:17.768 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 17:43:17.768 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:17.768 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:43:17.778 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 496 ms.
17-03-17 17:43:17.808 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:43:17.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:43:17.808 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:17.808 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:43:17.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:43:17.808 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:17.818 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:17.818 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:43:17.818 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:17.818 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 17:43:17.998 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:43:17.998 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:43:17.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36326 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:43:17.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:43:17.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.165498411791998. ------
17-03-17 17:43:18.008 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17177 mm
17-03-17 17:43:18.008 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:43:18.008 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:18.008 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:18.008 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 17:43:18.008 -07 000000551 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 17:43:18.008 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37524, sync = True, waitForSettling = False)
17-03-17 17:43:18.008 -07 000000618 INF: Z Motor: Moving to -0.171774 mm, started at -0.165498 mm, distance = -6.28 um
17-03-17 17:43:18.018 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:18.018 -07 000000618 INF: FPGA: Xmit ZDACW 37524\n [Z Motor]
17-03-17 17:43:18.018 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:43:18.028 -07 000000618 INF: FPGA: 'ZDACW 37524' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:43:18.028 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:18.028 -07 000000627 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:43:18.038 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:43:18.038 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 17:43:18.038 -07 000000551 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:18.038 -07 000000551 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:43:18.038 -07 000000551 INF: Y Motor: Moving 1350 steps-29
17-03-17 17:43:18.048 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:18.048 -07 000000627 INF: FPGA: Recv ZDACR 37524
17-03-17 17:43:18.058 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:43:18.058 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:43:18.058 -07 000000618 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 17:43:18.198 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 17:43:18.198 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:43:18.198 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:18.198 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 17:43:18.198 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:43:18.198 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:18.198 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:18.198 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:18.198 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 17:43:18.208 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 17:43:18.238 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:43:18.238 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:43:18.428 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 17:43:18.428 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:43:18.448 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:18.458 -07 000000382 INF: FPGA: Recv YRDPOS 153257
17-03-17 17:43:18.458 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:43:18.458 -07 000000551 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:18.458 -07 000000551 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 17:43:18.458 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 17:43:19.408 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:19.758 -07 000000382 INF: FPGA: Recv YRDPOS 153257
17-03-17 17:43:19.758 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 340 ms to get response, and 350 ms overall
17-03-17 17:43:19.758 -07 000000551 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:19.768 -07 000000551 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:43:19.768 -07 000000551 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:43:19.768 -07 000000551 INF: Y Motor: Moved to 74.8325 after 1758 ms (table move)
17-03-17 17:43:19.768 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171774 mm (DAC = 37524)
17-03-17 17:43:19.768 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:19.778 -07 000000627 INF: FPGA: Recv ZSGSRD 36030
17-03-17 17:43:19.778 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 17:43:19.778 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:19.778 -07 000000623 INF: FPGA: Recv ZSGSRD 36027
17-03-17 17:43:19.788 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:43:19.788 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:19.788 -07 000000627 INF: FPGA: Recv ZSGSRD 36025
17-03-17 17:43:19.798 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:19.798 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:19.798 -07 000000486 INF: FPGA: Recv ZSGSRD 36033
17-03-17 17:43:19.808 -07 000000501 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:19.808 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:19.808 -07 000000382 INF: FPGA: Recv ZSGSRD 36023
17-03-17 17:43:19.818 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:19.818 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:19.818 -07 000000627 INF: FPGA: Recv ZSGSRD 36033
17-03-17 17:43:19.828 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:19.828 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:19.828 -07 000000486 INF: FPGA: Recv ZSGSRD 36032
17-03-17 17:43:19.838 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:19.838 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:19.838 -07 000000382 INF: FPGA: Recv ZSGSRD 36031
17-03-17 17:43:19.848 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:19.848 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:19.848 -07 000000627 INF: FPGA: Recv ZSGSRD 36027
17-03-17 17:43:19.858 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:19.858 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:19.858 -07 000000486 INF: FPGA: Recv ZSGSRD 36030
17-03-17 17:43:19.868 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:19.868 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:19.868 -07 000000382 INF: FPGA: Recv ZPIEZORD 31933
17-03-17 17:43:19.878 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:19.878 -07 000000501 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.726 V. Piezo Error = -9.0 V.
17-03-17 17:43:19.878 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.8 um, Read 10 ADC samples: Avg = 36029 (-170.9 uncal um), Error = 0.9 uncal um, Median = 36030 (-170.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36023 (-170.9 uncal um), Max = 36033 (-170.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:43:19.878 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36029, posNoise = 4, negNoise = 6
17-03-17 17:43:19.878 -07 000000501 INF: Z Motor: After move to -0.171774, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:19.878 -07 000000501 INF: Z Motor: Settle wait time = 1761 ms, measure time = 101 ms (allowed 150 ms), total time = 1862 ms
17-03-17 17:43:19.878 -07 000000501 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 17:43:19.928 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1919 ms
17-03-17 17:43:19.928 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:43:19.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:19.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:19.928 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:43:19.928 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:19.928 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:19.928 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:19.928 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:43:19.928 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:43:19.928 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:43:19.928 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:43:19.938 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:43:19.938 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:43:19.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:43:19.988 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:43:20.188 -07 000000608 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:43:20.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:43:20.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:43:20.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 17:43:20.228 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:43:20.228 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 17:43:20.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 17:43:20.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:43:20.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:20.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:43:20.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:43:20.328 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:20.328 -07 000000623 INF: Autofocus start
17-03-17 17:43:20.328 -07 000000623 INF: MeasureProfile start
17-03-17 17:43:20.338 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:20.338 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:43:20.338 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:43:20.338 -07 000000623 INF: MeasureProfile done
17-03-17 17:43:20.338 -07 000000623 INF: X=48  Z correction [um]=0.1739867
17-03-17 17:43:20.338 -07 000000623 INF: Autofocus finished
17-03-17 17:43:20.538 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:43:20.538 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:43:20.538 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.17178129126664. ----------
17-03-17 17:43:20.538 -07 000000610 INF: Cycle	4	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:43:20.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36075, sync = True, waitForSettling = True)
17-03-17 17:43:20.548 -07 000000610 INF: Z Motor: Moving to -0.165141 mm, started at -0.171781 mm, distance = 6.64 um
17-03-17 17:43:20.548 -07 000000610 INF: FPGA: Xmit ZDACW 36075\n [Z Motor]
17-03-17 17:43:20.548 -07 000000569 INF: FPGA: Recv ZDACW
17-03-17 17:43:20.558 -07 000000610 INF: FPGA: 'ZDACW 36075' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:20.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:20.558 -07 000000551 INF: FPGA: Recv ZDACR 36075
17-03-17 17:43:20.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:20.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:43:20.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:20.718 -07 000000608 INF: FPGA: Recv ZSGSRD 34998
17-03-17 17:43:20.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:20.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:20.728 -07 000000501 INF: FPGA: Recv ZSGSRD 34996
17-03-17 17:43:20.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:20.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:20.738 -07 000000627 INF: FPGA: Recv ZSGSRD 34999
17-03-17 17:43:20.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:20.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:20.748 -07 000000623 INF: FPGA: Recv ZSGSRD 34995
17-03-17 17:43:20.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:20.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:20.758 -07 000000569 INF: FPGA: Recv ZSGSRD 34997
17-03-17 17:43:20.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:20.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:20.768 -07 000000627 INF: FPGA: Recv ZSGSRD 35006
17-03-17 17:43:20.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:20.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:20.778 -07 000000569 INF: FPGA: Recv ZSGSRD 35000
17-03-17 17:43:20.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:20.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:20.788 -07 000000551 INF: FPGA: Recv ZSGSRD 35000
17-03-17 17:43:20.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:20.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:20.798 -07 000000569 INF: FPGA: Recv ZSGSRD 34991
17-03-17 17:43:20.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:20.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:20.808 -07 000000623 INF: FPGA: Recv ZSGSRD 34999
17-03-17 17:43:20.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:20.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:20.818 -07 000000569 INF: FPGA: Recv ZPIEZORD 30563
17-03-17 17:43:20.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:20.828 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.505 V. Piezo Error = -9.8 V.
17-03-17 17:43:20.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.1 um, Read 10 ADC samples: Avg = 34998 (-164.3 uncal um), Error = 0.8 uncal um, Median = 34998 (-164.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 34991 (-164.2 uncal um), Max = 35006 (-164.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:43:20.828 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34998, posNoise = 8, negNoise = 7
17-03-17 17:43:20.828 -07 000000610 INF: Z Motor: After move to -0.165141, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:20.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:43:20.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:20.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:20.828 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:20.828 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:20.828 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:43:20.828 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:20.828 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:43:20.828 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:43:20.828 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:43:20.828 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:43:20.828 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:43:20.828 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:43:20.838 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:43:20.838 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:43:20.838 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:43:20.838 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:43:20.838 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:43:20.838 -07 000000569 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:43:20.848 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:43:20.848 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:43:20.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36251 150\n [Camera]
17-03-17 17:43:21.048 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:43:21.438 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:43:21.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:43:21.438 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:21.438 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:21.438 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 17:43:21.438 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:43:21.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:43:21.438 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:21.438 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:21.438 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-17 17:43:21.528 -07 000000569 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:43:21.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:43:21.628 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36251 775
17-03-17 17:43:21.778 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:43:21.818 -07 000000608 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:43:21.818 -07 000000608 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:43:21.818 -07 000000608 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:21.818 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:43:21.818 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:43:21.818 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:21.818 -07 000000608 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:21.818 -07 000000608 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:43:21.818 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:21.828 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:43:21.948 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.99219,
17-03-17 17:43:21.968 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 17:43:21.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 17:43:21.968 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:21.968 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 17:43:21.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 17:43:21.968 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:21.968 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:21.968 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:43:21.978 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:21.978 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 17:43:22.158 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:43:22.158 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:43:22.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36251 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-17 17:43:22.368 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 17:43:22.368 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:43:22.368 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:22.368 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 17:43:22.368 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 17:43:22.378 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:22.378 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:22.378 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 17:43:22.378 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 17:43:22.378 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:43:22.388 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 17:43:22.418 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 17:43:22.418 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 17:43:22.458 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-17 17:43:22.458 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 17:43:22.468 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 17:43:22.468 -07 000000382 INF: FPGA: Recv EMCUR 
17-03-17 17:43:22.478 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:22.478 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 17:43:22.978 -07 000000475 INF: FPGA: Recv EMIN
17-03-17 17:43:22.978 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 492 ms to get response, and 502 ms overall
17-03-17 17:43:22.978 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 17:43:22.978 -07 000000623 INF: FPGA: Recv EMCUR 
17-03-17 17:43:22.988 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:43:22.988 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:43:22.988 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.165157928548485. ------
17-03-17 17:43:22.988 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:22.988 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13953 mm
17-03-17 17:43:22.988 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:43:22.988 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 17:43:22.988 -07 000000561 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 17:43:22.988 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30481, sync = True, waitForSettling = False)
17-03-17 17:43:22.998 -07 000000551 INF: Z Motor: Moving to -0.139533 mm, started at -0.165158 mm, distance = 25.62 um
17-03-17 17:43:22.998 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:22.998 -07 000000608 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:22.998 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:43:22.998 -07 000000501 INF: FPGA: Recv YRDPOS 153259
17-03-17 17:43:23.008 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:23.008 -07 000000561 INF: Y Motor: Encoder = 153259 = motor step 119733.6 = 74.8335 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:23.008 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:43:23.008 -07 000000561 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 17:43:23.008 -07 000000561 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 17:43:23.018 -07 000000551 INF: FPGA: Xmit ZDACW 30481\n [Z Motor]
17-03-17 17:43:23.018 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:43:23.028 -07 000000561 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 17:43:23.028 -07 000000551 INF: FPGA: 'ZDACW 30481' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 17:43:23.038 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:23.038 -07 000000627 INF: FPGA: Recv ZDACR 30481
17-03-17 17:43:23.048 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:43:23.048 -07 000000551 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 17:43:23.208 -07 000000608 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:43:23.208 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 17:43:24.648 -07 000000501 INF: FPGA: Recv YMVTO 122702 23904
17-03-17 17:43:24.648 -07 000000561 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1646 ms overall
17-03-17 17:43:24.648 -07 000000561 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 17:43:24.648 -07 000000561 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 17:43:24.648 -07 000000561 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1646 ms, distance = 14.920 mm, average velocity = 9.064 mm/sec
17-03-17 17:43:26.528 -07 000000608 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:43:26.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:43:27.308 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 4.003063,
17-03-17 17:43:27.498 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:27.498 -07 000000623 INF: FPGA: Recv YRDPOS 122698
17-03-17 17:43:27.508 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:27.508 -07 000000561 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:27.528 -07 000000561 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:43:27.528 -07 000000561 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -4 counts (-0.002 mm)
17-03-17 17:43:27.528 -07 000000561 INF: Y Motor: Moved to 59.9111 after 4536 ms
17-03-17 17:43:27.528 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139533 mm (DAC = 30481)
17-03-17 17:43:27.528 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:27.538 -07 000000561 INF: FPGA: Recv ZSGSRD 31013
17-03-17 17:43:27.538 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:43:27.538 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:27.538 -07 000000486 INF: FPGA: Recv ZSGSRD 31013
17-03-17 17:43:27.548 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:43:27.548 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:27.548 -07 000000627 INF: FPGA: Recv ZSGSRD 31012
17-03-17 17:43:27.558 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:27.558 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:27.558 -07 000000627 INF: FPGA: Recv ZSGSRD 31005
17-03-17 17:43:27.568 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:27.568 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:27.568 -07 000000486 INF: FPGA: Recv ZSGSRD 31006
17-03-17 17:43:27.578 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:27.578 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:27.578 -07 000000623 INF: FPGA: Recv ZSGSRD 31011
17-03-17 17:43:27.588 -07 000000382 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:27.588 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:27.588 -07 000000623 INF: FPGA: Recv ZSGSRD 31013
17-03-17 17:43:27.598 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:27.598 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:27.598 -07 000000623 INF: FPGA: Recv ZSGSRD 31015
17-03-17 17:43:27.608 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:27.608 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:27.608 -07 000000608 INF: FPGA: Recv ZSGSRD 31011
17-03-17 17:43:27.618 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:27.618 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:27.618 -07 000000608 INF: FPGA: Recv ZSGSRD 31012
17-03-17 17:43:27.628 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:27.628 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:27.628 -07 000000623 INF: FPGA: Recv ZPIEZORD 26460
17-03-17 17:43:27.638 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:27.638 -07 000000382 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.651 V. Piezo Error = -10.0 V.
17-03-17 17:43:27.638 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31011 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31012 (-138.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31005 (-138.7 uncal um), Max = 31015 (-138.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:43:27.638 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31011, posNoise = 4, negNoise = 6
17-03-17 17:43:27.638 -07 000000382 INF: Z Motor: After move to -0.139533, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:27.638 -07 000000382 INF: Z Motor: Settle wait time = 4538 ms, measure time = 102 ms (allowed 150 ms), total time = 4640 ms
17-03-17 17:43:27.638 -07 000000382 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 17:43:27.688 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4692 ms
17-03-17 17:43:27.688 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:43:27.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:27.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:27.688 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:27.688 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:43:27.688 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:27.688 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:27.688 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:43:27.688 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 17:43:27.708 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 21 ms.
17-03-17 17:43:27.708 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:43:27.718 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 17:43:27.718 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:43:27.728 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:43:27.728 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 40 ms.
17-03-17 17:43:27.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:43:27.778 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:43:27.978 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:43:27.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:43:27.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:43:27.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 17:43:28.018 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:43:28.018 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:43:28.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 17:43:28.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 17:43:28.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:28.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:43:28.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 17:43:28.118 -07 000000433 INF: Image SNR check: start
17-03-17 17:43:28.128 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:28.128 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:28.138 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 17:43:28.138 -07 000000608 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:43:28.138 -07 000000433 INF: Image SNR check: pass  [peak (Max-Min)=59.83]
17-03-17 17:43:28.138 -07 000000433 INF: Autofocus start
17-03-17 17:43:28.138 -07 000000433 INF: MeasureProfile start
17-03-17 17:43:28.148 -07 000000433 INF: MeasureProfile done
17-03-17 17:43:28.148 -07 000000433 INF: X=27  Z correction [um]=0.1059322
17-03-17 17:43:28.148 -07 000000433 INF: Autofocus finished
17-03-17 17:43:28.338 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:43:28.338 -07 000000608 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:43:28.338 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139544594739284. ----------
17-03-17 17:43:28.338 -07 000000610 INF: Cycle	4	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:43:28.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29016, sync = True, waitForSettling = True)
17-03-17 17:43:28.348 -07 000000610 INF: Z Motor: Moving to -0.132827 mm, started at -0.139545 mm, distance = 6.72 um
17-03-17 17:43:28.348 -07 000000610 INF: FPGA: Xmit ZDACW 29016\n [Z Motor]
17-03-17 17:43:28.348 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 17:43:28.358 -07 000000610 INF: FPGA: 'ZDACW 29016' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:43:28.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:28.358 -07 000000486 INF: FPGA: Recv ZDACR 29016
17-03-17 17:43:28.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:28.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:43:28.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:28.518 -07 000000486 INF: FPGA: Recv ZSGSRD 29963
17-03-17 17:43:28.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:28.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:28.528 -07 000000475 INF: FPGA: Recv ZSGSRD 29966
17-03-17 17:43:28.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:28.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:28.538 -07 000000627 INF: FPGA: Recv ZSGSRD 29966
17-03-17 17:43:28.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:28.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:28.548 -07 000000501 INF: FPGA: Recv ZSGSRD 29963
17-03-17 17:43:28.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:28.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:28.558 -07 000000608 INF: FPGA: Recv ZSGSRD 29964
17-03-17 17:43:28.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:28.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:28.568 -07 000000475 INF: FPGA: Recv ZSGSRD 29963
17-03-17 17:43:28.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:28.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:28.578 -07 000000627 INF: FPGA: Recv ZSGSRD 29970
17-03-17 17:43:28.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:28.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:28.588 -07 000000569 INF: FPGA: Recv ZSGSRD 29968
17-03-17 17:43:28.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:28.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:28.598 -07 000000627 INF: FPGA: Recv ZSGSRD 29965
17-03-17 17:43:28.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:28.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:28.608 -07 000000501 INF: FPGA: Recv ZSGSRD 29968
17-03-17 17:43:28.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:28.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:28.618 -07 000000627 INF: FPGA: Recv ZPIEZORD 25354
17-03-17 17:43:28.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:28.628 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.428 V. Piezo Error = -10.1 V.
17-03-17 17:43:28.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29966 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29966 (-132.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29963 (-132.0 uncal um), Max = 29970 (-132.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:43:28.628 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29966, posNoise = 4, negNoise = 3
17-03-17 17:43:28.628 -07 000000610 INF: Z Motor: After move to -0.132827, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:28.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:43:28.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:28.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:28.628 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:28.628 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:43:28.628 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:28.628 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:28.628 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:43:28.628 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:43:28.628 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:43:28.628 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:43:28.628 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:43:28.628 -07 000000627 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 17:43:28.638 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:43:28.638 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:43:28.648 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 17:43:28.648 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:43:28.648 -07 000000627 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 17:43:28.648 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:43:28.658 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:43:28.658 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:43:28.658 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:43:28.658 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 17:43:28.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29193 150\n [Camera]
17-03-17 17:43:28.868 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:43:29.258 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:43:29.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:43:29.258 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:29.258 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:29.258 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 17:43:29.258 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:43:29.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:43:29.258 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:29.378 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:29.378 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 17:43:29.448 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29193 775
17-03-17 17:43:29.598 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:43:29.638 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:43:29.638 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 17:43:29.638 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:29.638 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:43:29.638 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:43:29.748 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:43:29.748 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:43:29.748 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:29.748 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:43:29.758 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 496 ms.
17-03-17 17:43:29.788 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:43:29.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:43:29.788 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:29.788 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:43:29.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:43:29.788 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:29.788 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:43:29.788 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:29.788 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:29.788 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:43:29.978 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:43:29.978 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:43:29.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29193 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-17 17:43:29.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:43:29.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.132831293051144. ------
17-03-17 17:43:29.988 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13920 mm
17-03-17 17:43:29.988 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:43:29.988 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:29.988 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:29.988 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 17:43:29.988 -07 000000459 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 17:43:29.988 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30408, sync = True, waitForSettling = False)
17-03-17 17:43:29.988 -07 000000576 INF: Z Motor: Moving to -0.139199 mm, started at -0.132831 mm, distance = -6.37 um
17-03-17 17:43:29.998 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:29.998 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:43:30.008 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:30.008 -07 000000623 INF: FPGA: Recv YRDPOS 122698
17-03-17 17:43:30.018 -07 000000576 INF: FPGA: Xmit ZDACW 30408\n [Z Motor]
17-03-17 17:43:30.018 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:43:30.018 -07 000000459 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:30.018 -07 000000459 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:43:30.018 -07 000000459 INF: Y Motor: Moving 1330 steps1
17-03-17 17:43:30.018 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:43:30.028 -07 000000576 INF: FPGA: 'ZDACW 30408' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-17 17:43:30.028 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:30.028 -07 000000561 INF: FPGA: Recv ZDACR 30408
17-03-17 17:43:30.038 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:43:30.038 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:30.038 -07 000000576 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 17:43:30.168 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:43:30.168 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:43:30.168 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:30.168 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:43:30.168 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:43:30.168 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:30.168 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:43:30.178 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:43:30.178 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:43:30.178 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:43:30.198 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:43:30.198 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:43:30.408 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 17:43:30.408 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:43:30.438 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:30.438 -07 000000486 INF: FPGA: Recv YRDPOS 124382
17-03-17 17:43:30.448 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:43:30.448 -07 000000459 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:30.448 -07 000000459 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 17:43:30.448 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 17:43:31.398 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:31.398 -07 000000551 INF: FPGA: Recv YRDPOS 124382
17-03-17 17:43:31.408 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:31.408 -07 000000459 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:31.418 -07 000000459 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:43:31.418 -07 000000459 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:43:31.418 -07 000000459 INF: Y Motor: Moved to 60.7334 after 1433 ms (table move)
17-03-17 17:43:31.428 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139199 mm (DAC = 30408)
17-03-17 17:43:31.428 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:31.428 -07 000000438 INF: FPGA: Recv ZSGSRD 30959
17-03-17 17:43:31.438 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:43:31.438 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:31.438 -07 000000551 INF: FPGA: Recv ZSGSRD 30957
17-03-17 17:43:31.448 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:31.448 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:31.448 -07 000000475 INF: FPGA: Recv ZSGSRD 30957
17-03-17 17:43:31.458 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:31.458 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:31.458 -07 000000486 INF: FPGA: Recv ZSGSRD 30951
17-03-17 17:43:31.468 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:31.468 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:31.468 -07 000000561 INF: FPGA: Recv ZSGSRD 30959
17-03-17 17:43:31.478 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:31.478 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:31.478 -07 000000623 INF: FPGA: Recv ZSGSRD 30963
17-03-17 17:43:31.488 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:31.488 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:31.488 -07 000000433 INF: FPGA: Recv ZSGSRD 30961
17-03-17 17:43:31.498 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:31.498 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:31.498 -07 000000486 INF: FPGA: Recv ZSGSRD 30965
17-03-17 17:43:31.508 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:31.508 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:31.508 -07 000000569 INF: FPGA: Recv ZSGSRD 30949
17-03-17 17:43:31.518 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:31.518 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:31.518 -07 000000618 INF: FPGA: Recv ZSGSRD 30961
17-03-17 17:43:31.528 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:31.528 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:31.528 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:43:31.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:43:31.528 -07 000000569 INF: FPGA: Recv ZPIEZORD 26716
17-03-17 17:43:31.538 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:31.538 -07 000000501 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.640 V. Piezo Error = -9.3 V.
17-03-17 17:43:31.538 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30958 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30959 (-138.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30949 (-138.3 uncal um), Max = 30965 (-138.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:43:31.538 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30958, posNoise = 7, negNoise = 9
17-03-17 17:43:31.538 -07 000000501 INF: Z Motor: After move to -0.139199, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:31.538 -07 000000501 INF: Z Motor: Settle wait time = 1435 ms, measure time = 109 ms (allowed 150 ms), total time = 1544 ms
17-03-17 17:43:31.538 -07 000000501 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 17:43:31.588 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 17:43:31.588 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:43:31.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:31.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:31.588 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:31.588 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:31.588 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:43:31.588 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:31.588 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:43:31.588 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:43:31.598 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:43:31.598 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:43:31.608 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:43:31.608 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 17:43:31.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:43:31.658 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:43:31.858 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:43:31.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:43:31.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:43:31.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 17:43:31.898 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:43:31.898 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:43:31.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 17:43:31.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:43:31.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:31.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:43:31.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 17:43:31.998 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:31.998 -07 000000438 INF: Autofocus start
17-03-17 17:43:31.998 -07 000000438 INF: MeasureProfile start
17-03-17 17:43:31.998 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:32.008 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:43:32.008 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:43:32.008 -07 000000438 INF: MeasureProfile done
17-03-17 17:43:32.008 -07 000000438 INF: X=32  Z correction [um]=0.1299841
17-03-17 17:43:32.008 -07 000000438 INF: Autofocus finished
17-03-17 17:43:32.208 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:43:32.208 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:43:32.208 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.139204111495771. ----------
17-03-17 17:43:32.208 -07 000000610 INF: Cycle	4	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:43:32.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28949, sync = True, waitForSettling = True)
17-03-17 17:43:32.218 -07 000000610 INF: Z Motor: Moving to -0.132520 mm, started at -0.139204 mm, distance = 6.68 um
17-03-17 17:43:32.218 -07 000000610 INF: FPGA: Xmit ZDACW 28949\n [Z Motor]
17-03-17 17:43:32.218 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:43:32.228 -07 000000610 INF: FPGA: 'ZDACW 28949' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:32.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:32.228 -07 000000569 INF: FPGA: Recv ZDACR 28949
17-03-17 17:43:32.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:43:32.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:43:32.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:32.388 -07 000000608 INF: FPGA: Recv ZSGSRD 29918
17-03-17 17:43:32.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:32.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:32.398 -07 000000561 INF: FPGA: Recv ZSGSRD 29917
17-03-17 17:43:32.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:32.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:32.408 -07 000000480 INF: FPGA: Recv ZSGSRD 29924
17-03-17 17:43:32.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:32.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:32.418 -07 000000618 INF: FPGA: Recv ZSGSRD 29920
17-03-17 17:43:32.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:32.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:32.428 -07 000000382 INF: FPGA: Recv ZSGSRD 29916
17-03-17 17:43:32.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:32.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:32.438 -07 000000623 INF: FPGA: Recv ZSGSRD 29917
17-03-17 17:43:32.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:32.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:32.448 -07 000000480 INF: FPGA: Recv ZSGSRD 29923
17-03-17 17:43:32.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:32.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:32.458 -07 000000576 INF: FPGA: Recv ZSGSRD 29923
17-03-17 17:43:32.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:32.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:32.468 -07 000000569 INF: FPGA: Recv ZSGSRD 29913
17-03-17 17:43:32.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:32.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:32.478 -07 000000627 INF: FPGA: Recv ZSGSRD 29920
17-03-17 17:43:32.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:32.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:32.488 -07 000000551 INF: FPGA: Recv ZPIEZORD 25333
17-03-17 17:43:32.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:32.498 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.417 V. Piezo Error = -10.1 V.
17-03-17 17:43:32.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29919 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29919 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29913 (-131.7 uncal um), Max = 29924 (-131.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:43:32.498 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29919, posNoise = 5, negNoise = 6
17-03-17 17:43:32.498 -07 000000610 INF: Z Motor: After move to -0.132520, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:32.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:43:32.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:32.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:32.498 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:32.498 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:32.498 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:43:32.498 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:32.498 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:43:32.498 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:43:32.498 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:43:32.498 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:43:32.498 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:43:32.498 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:43:32.498 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:43:32.498 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:43:32.508 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:43:32.508 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:43:32.518 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 17:43:32.518 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 17:43:32.518 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 17:43:32.518 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:43:32.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29126 150\n [Camera]
17-03-17 17:43:32.668 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.99219,
17-03-17 17:43:32.718 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:43:33.108 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:43:33.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:43:33.118 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:33.118 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:33.118 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:43:33.118 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:43:33.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:43:33.118 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:33.118 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:33.118 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 17:43:33.308 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29126 775
17-03-17 17:43:33.458 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:43:33.518 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 17:43:33.518 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 17:43:33.518 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:33.518 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 17:43:33.518 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 17:43:33.518 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:33.518 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:33.518 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 17:43:33.518 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:33.528 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 17:43:33.648 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:43:33.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:43:33.648 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:33.648 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:33.648 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 17:43:33.648 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:43:33.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:43:33.648 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:33.648 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:33.648 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 17:43:33.838 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 17:43:33.838 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:43:33.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29126 150' command took 2 ms to send, 1305 ms to get response, and 1315 ms overall
17-03-17 17:43:33.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:43:33.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.132529355080481. ------
17-03-17 17:43:33.838 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13923 mm
17-03-17 17:43:33.848 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:43:33.848 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:33.848 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 17:43:33.848 -07 000000576 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 17:43:33.848 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:33.848 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 30414, sync = True, waitForSettling = False)
17-03-17 17:43:33.848 -07 000000608 INF: Z Motor: Moving to -0.139226 mm, started at -0.132529 mm, distance = -6.70 um
17-03-17 17:43:33.858 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:33.858 -07 000000608 INF: FPGA: Xmit ZDACW 30414\n [Z Motor]
17-03-17 17:43:33.858 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:43:33.868 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:33.868 -07 000000608 INF: FPGA: 'ZDACW 30414' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 17:43:33.868 -07 000000618 INF: FPGA: Recv YRDPOS 124383
17-03-17 17:43:33.878 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:43:33.878 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 17:43:33.878 -07 000000576 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:33.878 -07 000000576 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:43:33.878 -07 000000576 INF: Y Motor: Moving 1342 steps-19
17-03-17 17:43:33.888 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:33.888 -07 000000438 INF: FPGA: Recv ZDACR 30414
17-03-17 17:43:33.898 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:43:33.898 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:43:33.898 -07 000000608 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 17:43:34.048 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 17:43:34.048 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 17:43:34.048 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:34.048 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 17:43:34.048 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 17:43:34.048 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:34.058 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:43:34.058 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 17:43:34.058 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 17:43:34.068 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 17:43:34.078 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:43:34.078 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:43:34.268 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 17:43:34.268 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 17:43:34.298 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:34.308 -07 000000551 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:43:34.318 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:34.318 -07 000000576 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:34.318 -07 000000576 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 17:43:34.318 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.130 mm/sec
17-03-17 17:43:35.268 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:35.268 -07 000000608 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:43:35.278 -07 000000576 INF: FPGA: 'YRDPOS' command took 2 ms to send, 1 ms to get response, and 11 ms overall
17-03-17 17:43:35.278 -07 000000576 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:35.298 -07 000000576 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:43:35.298 -07 000000576 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:43:35.298 -07 000000576 INF: Y Motor: Moved to 61.5645 after 1448 ms (table move)
17-03-17 17:43:35.298 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139226 mm (DAC = 30414)
17-03-17 17:43:35.298 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:35.298 -07 000000551 INF: FPGA: Recv ZSGSRD 30959
17-03-17 17:43:35.308 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:43:35.308 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:35.308 -07 000000576 INF: FPGA: Recv ZSGSRD 30951
17-03-17 17:43:35.318 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:35.318 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:35.318 -07 000000608 INF: FPGA: Recv ZSGSRD 30961
17-03-17 17:43:35.328 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:35.328 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:35.328 -07 000000618 INF: FPGA: Recv ZSGSRD 30955
17-03-17 17:43:35.338 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:35.338 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:35.338 -07 000000433 INF: FPGA: Recv ZSGSRD 30961
17-03-17 17:43:35.348 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:35.348 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:35.348 -07 000000576 INF: FPGA: Recv ZSGSRD 30972
17-03-17 17:43:35.358 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:35.358 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:35.358 -07 000000618 INF: FPGA: Recv ZSGSRD 30969
17-03-17 17:43:35.368 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:35.368 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:35.368 -07 000000551 INF: FPGA: Recv ZSGSRD 30953
17-03-17 17:43:35.378 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:35.378 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:35.378 -07 000000608 INF: FPGA: Recv ZSGSRD 30951
17-03-17 17:43:35.388 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:35.388 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:35.388 -07 000000433 INF: FPGA: Recv ZSGSRD 30960
17-03-17 17:43:35.398 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:35.398 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:35.398 -07 000000608 INF: FPGA: Recv ZPIEZORD 26729
17-03-17 17:43:35.408 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:35.408 -07 000000486 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.641 V. Piezo Error = -9.3 V.
17-03-17 17:43:35.408 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30959 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30960 (-138.4 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30951 (-138.4 uncal um), Max = 30972 (-138.5 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:43:35.408 -07 000000486 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30959, posNoise = 13, negNoise = 8
17-03-17 17:43:35.408 -07 000000486 INF: Z Motor: After move to -0.139226, error = 0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:35.408 -07 000000486 INF: Z Motor: Settle wait time = 1450 ms, measure time = 106 ms (allowed 150 ms), total time = 1556 ms
17-03-17 17:43:35.408 -07 000000486 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:43:35.458 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 17:43:35.458 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:43:35.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:35.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:35.458 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:35.458 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:35.458 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:43:35.458 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:35.458 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 17:43:35.458 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:43:35.468 -07 000000608 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:43:35.468 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:43:35.478 -07 000000608 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:43:35.478 -07 000000608 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 17:43:35.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:43:35.518 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:43:35.718 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:43:35.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:43:35.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:43:35.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-17 17:43:35.758 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:43:35.758 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 17:43:35.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 17:43:35.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 17:43:35.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:35.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:43:35.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 17:43:35.858 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:35.858 -07 000000576 INF: Autofocus start
17-03-17 17:43:35.858 -07 000000576 INF: MeasureProfile start
17-03-17 17:43:35.858 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:35.868 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:43:35.868 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:43:35.868 -07 000000576 INF: MeasureProfile done
17-03-17 17:43:35.868 -07 000000576 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:43:35.868 -07 000000576 INF: Autofocus finished
17-03-17 17:43:36.068 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:43:36.068 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 17:43:36.068 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.139210535707912. ----------
17-03-17 17:43:36.078 -07 000000610 INF: Cycle	4	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:43:36.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28938, sync = True, waitForSettling = True)
17-03-17 17:43:36.078 -07 000000610 INF: Z Motor: Moving to -0.132470 mm, started at -0.139211 mm, distance = 6.74 um
17-03-17 17:43:36.078 -07 000000610 INF: FPGA: Xmit ZDACW 28938\n [Z Motor]
17-03-17 17:43:36.078 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:43:36.088 -07 000000610 INF: FPGA: 'ZDACW 28938' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:43:36.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:36.088 -07 000000475 INF: FPGA: Recv ZDACR 28938
17-03-17 17:43:36.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:36.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:43:36.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:36.248 -07 000000551 INF: FPGA: Recv ZSGSRD 29912
17-03-17 17:43:36.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:36.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:36.258 -07 000000475 INF: FPGA: Recv ZSGSRD 29913
17-03-17 17:43:36.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:36.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:36.268 -07 000000475 INF: FPGA: Recv ZSGSRD 29911
17-03-17 17:43:36.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:36.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:36.278 -07 000000551 INF: FPGA: Recv ZSGSRD 29915
17-03-17 17:43:36.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:36.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:36.288 -07 000000475 INF: FPGA: Recv ZSGSRD 29916
17-03-17 17:43:36.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:36.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:36.298 -07 000000551 INF: FPGA: Recv ZSGSRD 29911
17-03-17 17:43:36.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:36.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:36.308 -07 000000475 INF: FPGA: Recv ZSGSRD 29910
17-03-17 17:43:36.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:36.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:36.318 -07 000000551 INF: FPGA: Recv ZSGSRD 29905
17-03-17 17:43:36.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:36.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:36.328 -07 000000623 INF: FPGA: Recv ZSGSRD 29911
17-03-17 17:43:36.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:36.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:36.338 -07 000000551 INF: FPGA: Recv ZSGSRD 29910
17-03-17 17:43:36.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:36.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:36.348 -07 000000623 INF: FPGA: Recv ZPIEZORD 25387
17-03-17 17:43:36.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:36.358 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -9.9 V.
17-03-17 17:43:36.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29911 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29911 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29905 (-131.7 uncal um), Max = 29916 (-131.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:43:36.358 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29911, posNoise = 5, negNoise = 6
17-03-17 17:43:36.358 -07 000000610 INF: Z Motor: After move to -0.132470, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:36.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:43:36.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:36.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:36.358 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:36.358 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:36.358 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:43:36.358 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:43:36.358 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:43:36.358 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:36.358 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:43:36.358 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:43:36.358 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 17:43:36.358 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:43:36.368 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:43:36.368 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:43:36.368 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:43:36.368 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:43:36.368 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:43:36.378 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:43:36.378 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:43:36.378 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:43:36.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29115 150\n [Camera]
17-03-17 17:43:36.528 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:43:36.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:43:36.578 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:43:36.968 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:43:36.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:43:36.968 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:36.968 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:36.968 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 17:43:36.968 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:43:36.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:43:36.968 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:36.968 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:36.968 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 17:43:37.158 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29115 775
17-03-17 17:43:37.308 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:43:37.348 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:43:37.348 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 17:43:37.348 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:37.348 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:43:37.348 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:43:37.348 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:37.348 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:43:37.348 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:43:37.348 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:37.358 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:43:37.498 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:43:37.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:43:37.498 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:37.498 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:37.498 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 17:43:37.498 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:43:37.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:43:37.498 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:37.498 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:37.498 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 17:43:37.688 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:43:37.688 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:43:37.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29115 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-17 17:43:37.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:43:37.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.564453125, Z-Position -0.132477961383347. ------
17-03-17 17:43:37.688 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:37.688 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13881 mm
17-03-17 17:43:37.688 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:43:37.698 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:37.698 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:43:37.698 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30323, sync = True, waitForSettling = False)
17-03-17 17:43:37.698 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:43:37.698 -07 000000486 INF: Z Motor: Moving to -0.138810 mm, started at -0.132478 mm, distance = -6.33 um
17-03-17 17:43:37.698 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 17:43:37.698 -07 000000623 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 17:43:37.718 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:37.838 -07 000000486 INF: FPGA: Xmit ZDACW 30323\n [Z Motor]
17-03-17 17:43:37.838 -07 000000569 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:43:37.838 -07 000000623 INF: FPGA: 'YRDPOS' command took 119 ms to send, 4 ms to get response, and 141 ms overall
17-03-17 17:43:37.838 -07 000000623 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:37.838 -07 000000623 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:43:37.838 -07 000000623 INF: Y Motor: Moving 1341 steps-17
17-03-17 17:43:37.838 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:43:37.848 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:43:37.848 -07 000000486 INF: FPGA: 'ZDACW 30323' command took 0 ms to send, 0 ms to get response, and 146 ms overall
17-03-17 17:43:37.858 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:37.858 -07 000000433 INF: FPGA: Recv ZDACR 30323
17-03-17 17:43:37.868 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:43:37.868 -07 000000486 INF: Z Motor: MoveAbsStepped took 167 ms (did NOT wait for settling yet))
17-03-17 17:43:37.888 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 17:43:37.888 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 17:43:37.888 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:37.888 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 17:43:37.888 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:43:37.888 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:37.888 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:43:37.898 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:43:37.898 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 17:43:37.898 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:43:37.898 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 17:43:37.898 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 17:43:38.138 -07 000000608 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 4.008536,
17-03-17 17:43:38.218 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 17:43:38.218 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 17:43:38.258 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:38.258 -07 000000627 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:43:38.268 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:43:38.268 -07 000000623 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:38.268 -07 000000623 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 17:43:38.268 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.838 mm, average velocity = 2.188 mm/sec
17-03-17 17:43:39.218 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:39.218 -07 000000501 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:43:39.228 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:39.228 -07 000000623 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:39.238 -07 000000623 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:43:39.238 -07 000000623 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:43:39.238 -07 000000623 INF: Y Motor: Moved to 62.3960 after 1544 ms (table move)
17-03-17 17:43:39.248 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138810 mm (DAC = 30323)
17-03-17 17:43:39.248 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:39.248 -07 000000433 INF: FPGA: Recv ZSGSRD 30897
17-03-17 17:43:39.258 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:43:39.258 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:39.258 -07 000000608 INF: FPGA: Recv ZSGSRD 30897
17-03-17 17:43:39.268 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:39.268 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:39.268 -07 000000576 INF: FPGA: Recv ZSGSRD 30903
17-03-17 17:43:39.278 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:39.278 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:39.278 -07 000000618 INF: FPGA: Recv ZSGSRD 30907
17-03-17 17:43:39.288 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:39.288 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:39.288 -07 000000576 INF: FPGA: Recv ZSGSRD 30899
17-03-17 17:43:39.298 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:39.298 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:39.298 -07 000000623 INF: FPGA: Recv ZSGSRD 30902
17-03-17 17:43:39.308 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:39.308 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:39.308 -07 000000608 INF: FPGA: Recv ZSGSRD 30897
17-03-17 17:43:39.318 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:39.318 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:39.318 -07 000000486 INF: FPGA: Recv ZSGSRD 30889
17-03-17 17:43:39.328 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:39.328 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:39.328 -07 000000623 INF: FPGA: Recv ZSGSRD 30893
17-03-17 17:43:39.338 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:39.338 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:39.338 -07 000000486 INF: FPGA: Recv ZSGSRD 30889
17-03-17 17:43:39.348 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:39.348 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:39.348 -07 000000433 INF: FPGA: Recv ZPIEZORD 26694
17-03-17 17:43:39.358 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:39.358 -07 000000475 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.627 V. Piezo Error = -9.2 V.
17-03-17 17:43:39.358 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30897 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30897 (-138.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30889 (-138.0 uncal um), Max = 30907 (-138.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:43:39.358 -07 000000475 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30897, posNoise = 10, negNoise = 8
17-03-17 17:43:39.358 -07 000000475 INF: Z Motor: After move to -0.138810, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:39.358 -07 000000475 INF: Z Motor: Settle wait time = 1548 ms, measure time = 109 ms (allowed 150 ms), total time = 1657 ms
17-03-17 17:43:39.358 -07 000000475 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 17:43:39.408 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1710 ms
17-03-17 17:43:39.408 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:43:39.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:39.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:39.408 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:39.408 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:39.408 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:43:39.408 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:39.408 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:43:39.408 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:43:39.418 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:43:39.418 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:43:39.428 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 17:43:39.428 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 17:43:39.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:43:39.468 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:43:39.668 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:43:39.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:43:39.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:43:39.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:43:39.708 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:43:39.708 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 17:43:39.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 17:43:39.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 17:43:39.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:39.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:43:39.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 17:43:39.808 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:39.808 -07 000000608 INF: Autofocus start
17-03-17 17:43:39.808 -07 000000608 INF: MeasureProfile start
17-03-17 17:43:39.808 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:39.818 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:43:39.818 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:43:39.818 -07 000000608 INF: MeasureProfile done
17-03-17 17:43:39.818 -07 000000608 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:43:39.818 -07 000000608 INF: Autofocus finished
17-03-17 17:43:40.018 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:43:40.018 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:43:40.018 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.138812234555123. ----------
17-03-17 17:43:40.018 -07 000000610 INF: Cycle	4	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:43:40.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28847, sync = True, waitForSettling = True)
17-03-17 17:43:40.028 -07 000000610 INF: Z Motor: Moving to -0.132053 mm, started at -0.138812 mm, distance = 6.76 um
17-03-17 17:43:40.028 -07 000000610 INF: FPGA: Xmit ZDACW 28847\n [Z Motor]
17-03-17 17:43:40.028 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:43:40.038 -07 000000610 INF: FPGA: 'ZDACW 28847' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:43:40.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:40.038 -07 000000551 INF: FPGA: Recv ZDACR 28847
17-03-17 17:43:40.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:40.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:43:40.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:40.198 -07 000000618 INF: FPGA: Recv ZSGSRD 29851
17-03-17 17:43:40.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:40.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:40.208 -07 000000623 INF: FPGA: Recv ZSGSRD 29854
17-03-17 17:43:40.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:40.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:40.218 -07 000000618 INF: FPGA: Recv ZSGSRD 29849
17-03-17 17:43:40.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:40.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:40.228 -07 000000623 INF: FPGA: Recv ZSGSRD 29843
17-03-17 17:43:40.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:40.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:40.238 -07 000000433 INF: FPGA: Recv ZSGSRD 29847
17-03-17 17:43:40.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:40.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:40.248 -07 000000475 INF: FPGA: Recv ZSGSRD 29850
17-03-17 17:43:40.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:40.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:40.258 -07 000000433 INF: FPGA: Recv ZSGSRD 29848
17-03-17 17:43:40.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:40.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:40.268 -07 000000551 INF: FPGA: Recv ZSGSRD 29847
17-03-17 17:43:40.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:40.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:40.278 -07 000000486 INF: FPGA: Recv ZSGSRD 29851
17-03-17 17:43:40.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:40.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:40.288 -07 000000618 INF: FPGA: Recv ZSGSRD 29850
17-03-17 17:43:40.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:40.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:40.298 -07 000000576 INF: FPGA: Recv ZPIEZORD 25322
17-03-17 17:43:40.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:40.308 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -9.9 V.
17-03-17 17:43:40.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29849 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29850 (-131.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29843 (-131.3 uncal um), Max = 29854 (-131.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:43:40.308 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29849, posNoise = 5, negNoise = 6
17-03-17 17:43:40.308 -07 000000610 INF: Z Motor: After move to -0.132053, error = -0.000027, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:40.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:43:40.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:40.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:40.308 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:40.308 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:40.308 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:43:40.308 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:40.308 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:43:40.308 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:43:40.308 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:43:40.308 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:43:40.308 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:43:40.308 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:43:40.318 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:43:40.318 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:43:40.318 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:43:40.318 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:43:40.318 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:43:40.318 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:43:40.328 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:43:40.328 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:43:40.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29024 150\n [Camera]
17-03-17 17:43:40.528 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:43:40.918 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:43:40.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:43:40.918 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:40.918 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:43:40.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:43:40.918 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:40.918 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:40.918 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:43:40.938 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:40.938 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:43:41.108 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29024 775
17-03-17 17:43:41.258 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:43:41.298 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:43:41.298 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:43:41.298 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:41.298 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:43:41.298 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:43:41.308 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:43:41.308 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:43:41.308 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:41.308 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:41.318 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:43:41.448 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:43:41.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:43:41.448 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:41.448 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:43:41.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:43:41.448 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:41.568 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:41.568 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 17:43:41.568 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:43:41.568 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:43:41.568 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:41.568 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:43:41.638 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:43:41.638 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:43:41.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29024 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-17 17:43:41.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:43:41.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39599609375, Z-Position -0.132079660230558. ------
17-03-17 17:43:41.648 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:41.648 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13877 mm
17-03-17 17:43:41.648 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:43:41.648 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 30315, sync = True, waitForSettling = False)
17-03-17 17:43:41.648 -07 000000475 INF: Z Motor: Moving to -0.138773 mm, started at -0.132080 mm, distance = -6.69 um
17-03-17 17:43:41.648 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 17:43:41.648 -07 000000576 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 17:43:41.648 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:41.658 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:43:41.658 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:41.658 -07 000000486 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:43:41.668 -07 000000475 INF: FPGA: Xmit ZDACW 30315\n [Z Motor]
17-03-17 17:43:41.668 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:43:41.668 -07 000000576 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:41.668 -07 000000576 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:43:41.668 -07 000000576 INF: Y Motor: Moving 1339 steps-14
17-03-17 17:43:41.668 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:43:41.678 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:43:41.678 -07 000000475 INF: FPGA: 'ZDACW 30315' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:43:41.688 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:43:41.698 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:41.698 -07 000000561 INF: FPGA: Recv ZDACR 30315
17-03-17 17:43:41.708 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 17:43:41.708 -07 000000475 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 17:43:41.878 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:43:41.878 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 17:43:41.938 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 17:43:41.948 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:43:41.948 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:41.948 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:43:41.948 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 17:43:41.948 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 17:43:41.948 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:41.948 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:43:41.948 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 502 ms.
17-03-17 17:43:41.958 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-17 17:43:42.058 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 17:43:42.058 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:43:42.088 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:42.098 -07 000000561 INF: FPGA: Recv YRDPOS 129484
17-03-17 17:43:42.098 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:43:42.098 -07 000000576 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:42.098 -07 000000576 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 17:43:42.098 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.107 mm/sec
17-03-17 17:43:43.048 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:43.048 -07 000000475 INF: FPGA: Recv YRDPOS 129484
17-03-17 17:43:43.058 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:43.058 -07 000000576 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:43.068 -07 000000576 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:43:43.078 -07 000000576 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:43:43.078 -07 000000576 INF: Y Motor: Moved to 63.2246 after 1423 ms (table move)
17-03-17 17:43:43.078 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138773 mm (DAC = 30315)
17-03-17 17:43:43.078 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:43.078 -07 000000433 INF: FPGA: Recv ZSGSRD 30892
17-03-17 17:43:43.088 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:43:43.088 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:43.088 -07 000000433 INF: FPGA: Recv ZSGSRD 30885
17-03-17 17:43:43.098 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:43.098 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:43.098 -07 000000576 INF: FPGA: Recv ZSGSRD 30889
17-03-17 17:43:43.108 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:43.108 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:43.108 -07 000000623 INF: FPGA: Recv ZSGSRD 30883
17-03-17 17:43:43.118 -07 000000551 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:43.118 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:43.118 -07 000000623 INF: FPGA: Recv ZSGSRD 30898
17-03-17 17:43:43.128 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:43.128 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:43.128 -07 000000623 INF: FPGA: Recv ZSGSRD 30903
17-03-17 17:43:43.138 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:43.138 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:43.138 -07 000000433 INF: FPGA: Recv ZSGSRD 30882
17-03-17 17:43:43.148 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:43.148 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:43.148 -07 000000576 INF: FPGA: Recv ZSGSRD 30896
17-03-17 17:43:43.158 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:43.158 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:43.158 -07 000000480 INF: FPGA: Recv ZSGSRD 30891
17-03-17 17:43:43.168 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:43.168 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:43.168 -07 000000480 INF: FPGA: Recv ZSGSRD 30888
17-03-17 17:43:43.178 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:43.188 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:43.188 -07 000000480 INF: FPGA: Recv ZPIEZORD 26709
17-03-17 17:43:43.198 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:43:43.198 -07 000000551 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.626 V. Piezo Error = -9.2 V.
17-03-17 17:43:43.198 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30891 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30890 (-138.0 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30882 (-137.9 uncal um), Max = 30903 (-138.1 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:43:43.198 -07 000000551 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30891, posNoise = 12, negNoise = 9
17-03-17 17:43:43.198 -07 000000551 INF: Z Motor: After move to -0.138773, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:43.198 -07 000000551 INF: Z Motor: Settle wait time = 1426 ms, measure time = 118 ms (allowed 150 ms), total time = 1544 ms
17-03-17 17:43:43.198 -07 000000551 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-17 17:43:43.238 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 17:43:43.238 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:43:43.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:43.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:43.238 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:43.238 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:43:43.238 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:43.238 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:43.238 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:43:43.238 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:43:43.248 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:43:43.248 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:43:43.258 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 17:43:43.258 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:43:43.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:43:43.308 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:43:43.498 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.977204,
17-03-17 17:43:43.508 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:43:43.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:43:43.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:43:43.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 17:43:43.538 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:43:43.548 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 17:43:43.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 17:43:43.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:43:43.618 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:43.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:43:43.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 17:43:43.648 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:43.648 -07 000000433 INF: Autofocus start
17-03-17 17:43:43.648 -07 000000433 INF: MeasureProfile start
17-03-17 17:43:43.648 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:43.658 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:43:43.658 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:43:43.658 -07 000000433 INF: MeasureProfile done
17-03-17 17:43:43.658 -07 000000433 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:43:43.658 -07 000000433 INF: Autofocus finished
17-03-17 17:43:43.858 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:43:43.858 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:43:43.858 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.138773689282273. ----------
17-03-17 17:43:43.858 -07 000000610 INF: Cycle	4	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:43:43.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28823, sync = True, waitForSettling = True)
17-03-17 17:43:43.868 -07 000000610 INF: Z Motor: Moving to -0.131943 mm, started at -0.138774 mm, distance = 6.83 um
17-03-17 17:43:43.868 -07 000000610 INF: FPGA: Xmit ZDACW 28823\n [Z Motor]
17-03-17 17:43:43.868 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 17:43:43.878 -07 000000610 INF: FPGA: 'ZDACW 28823' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:43:43.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:43.878 -07 000000433 INF: FPGA: Recv ZDACR 28823
17-03-17 17:43:43.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:43.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:43:44.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:44.038 -07 000000551 INF: FPGA: Recv ZSGSRD 29837
17-03-17 17:43:44.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:44.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:44.048 -07 000000433 INF: FPGA: Recv ZSGSRD 29838
17-03-17 17:43:44.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:44.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:44.058 -07 000000475 INF: FPGA: Recv ZSGSRD 29830
17-03-17 17:43:44.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:44.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:44.068 -07 000000486 INF: FPGA: Recv ZSGSRD 29824
17-03-17 17:43:44.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:44.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:44.078 -07 000000475 INF: FPGA: Recv ZSGSRD 29828
17-03-17 17:43:44.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:44.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:44.088 -07 000000475 INF: FPGA: Recv ZSGSRD 29830
17-03-17 17:43:44.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:44.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:44.098 -07 000000623 INF: FPGA: Recv ZSGSRD 29822
17-03-17 17:43:44.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:44.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:44.108 -07 000000475 INF: FPGA: Recv ZSGSRD 29827
17-03-17 17:43:44.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:44.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:44.118 -07 000000623 INF: FPGA: Recv ZSGSRD 29831
17-03-17 17:43:44.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:44.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:44.128 -07 000000486 INF: FPGA: Recv ZSGSRD 29834
17-03-17 17:43:44.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:44.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:44.138 -07 000000475 INF: FPGA: Recv ZPIEZORD 25301
17-03-17 17:43:44.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:44.148 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.398 V. Piezo Error = -9.9 V.
17-03-17 17:43:44.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29830 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29830 (-131.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29822 (-131.1 uncal um), Max = 29838 (-131.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:43:44.148 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29830, posNoise = 8, negNoise = 8
17-03-17 17:43:44.148 -07 000000610 INF: Z Motor: After move to -0.131943, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:44.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:43:44.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:44.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:44.148 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:44.148 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:44.148 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:43:44.148 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:43:44.148 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:43:44.148 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:44.148 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:43:44.148 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:43:44.148 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:43:44.148 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:43:44.158 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:43:44.158 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:43:44.158 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:43:44.158 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:43:44.158 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:43:44.168 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:43:44.168 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:43:44.168 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:43:44.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28999 150\n [Camera]
17-03-17 17:43:44.368 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:43:44.758 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:43:44.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:43:44.758 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:44.758 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:43:44.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:43:44.758 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:44.758 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:44.758 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:43:44.758 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:44.758 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:43:44.948 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28999 775
17-03-17 17:43:45.098 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:43:45.138 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:43:45.138 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:43:45.138 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:45.138 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:43:45.138 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:43:45.138 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:45.138 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:43:45.138 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:43:45.138 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:45.148 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:43:45.288 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:43:45.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:43:45.288 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:45.288 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:43:45.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:43:45.288 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:45.288 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 17:43:45.288 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:45.288 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:45.288 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 17:43:45.478 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:43:45.478 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:43:45.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28999 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-17 17:43:45.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:43:45.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.224609375, Z-Position -0.131957600199864. ------
17-03-17 17:43:45.488 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:45.488 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13812 mm
17-03-17 17:43:45.488 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:43:45.488 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:45.488 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 17:43:45.488 -07 000000382 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 17:43:45.488 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30173, sync = True, waitForSettling = False)
17-03-17 17:43:45.488 -07 000000480 INF: Z Motor: Moving to -0.138123 mm, started at -0.131958 mm, distance = -6.17 um
17-03-17 17:43:45.498 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:45.498 -07 000000480 INF: FPGA: Xmit ZDACW 30173\n [Z Motor]
17-03-17 17:43:45.498 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:43:45.508 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:45.508 -07 000000480 INF: FPGA: 'ZDACW 30173' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:43:45.508 -07 000000551 INF: FPGA: Recv YRDPOS 129485
17-03-17 17:43:45.518 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:43:45.518 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 17:43:45.518 -07 000000382 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:45.518 -07 000000382 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:43:45.518 -07 000000382 INF: Y Motor: Moving 1340 steps-16
17-03-17 17:43:45.528 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:45.528 -07 000000551 INF: FPGA: Recv ZDACR 30173
17-03-17 17:43:45.538 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:43:45.538 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:43:45.538 -07 000000480 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 17:43:45.668 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:43:45.668 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:43:45.668 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:43:45.668 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:45.668 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 17:43:45.668 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:45.678 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:43:45.678 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:43:45.678 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:43:45.688 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:43:45.718 -07 000000438 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:43:45.718 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:43:45.918 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 17:43:45.918 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-17 17:43:45.948 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:45.948 -07 000000618 INF: FPGA: Recv YRDPOS 131189
17-03-17 17:43:45.958 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:43:45.958 -07 000000382 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:45.958 -07 000000382 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 17:43:45.958 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-17 17:43:46.528 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:43:46.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:43:46.908 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:46.908 -07 000000618 INF: FPGA: Recv YRDPOS 131190
17-03-17 17:43:46.918 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:46.918 -07 000000382 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:46.928 -07 000000382 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:43:46.928 -07 000000382 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:43:46.928 -07 000000382 INF: Y Motor: Moved to 64.0576 after 1439 ms (table move)
17-03-17 17:43:46.928 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138123 mm (DAC = 30173)
17-03-17 17:43:46.928 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:46.938 -07 000000501 INF: FPGA: Recv ZSGSRD 30791
17-03-17 17:43:46.938 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:43:46.938 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:46.938 -07 000000623 INF: FPGA: Recv ZSGSRD 30781
17-03-17 17:43:46.948 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:43:46.948 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:46.948 -07 000000618 INF: FPGA: Recv ZSGSRD 30789
17-03-17 17:43:46.958 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:46.958 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:46.958 -07 000000623 INF: FPGA: Recv ZSGSRD 30789
17-03-17 17:43:46.968 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:46.968 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:46.968 -07 000000618 INF: FPGA: Recv ZSGSRD 30784
17-03-17 17:43:46.978 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:46.978 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:46.978 -07 000000480 INF: FPGA: Recv ZSGSRD 30785
17-03-17 17:43:46.988 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:46.988 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:46.988 -07 000000551 INF: FPGA: Recv ZSGSRD 30796
17-03-17 17:43:46.998 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:46.998 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:46.998 -07 000000618 INF: FPGA: Recv ZSGSRD 30795
17-03-17 17:43:47.008 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:47.008 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:47.008 -07 000000501 INF: FPGA: Recv ZSGSRD 30794
17-03-17 17:43:47.018 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:47.018 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:47.018 -07 000000623 INF: FPGA: Recv ZSGSRD 30790
17-03-17 17:43:47.028 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:47.028 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:47.028 -07 000000618 INF: FPGA: Recv ZPIEZORD 26568
17-03-17 17:43:47.038 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:47.038 -07 000000475 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.604 V. Piezo Error = -9.3 V.
17-03-17 17:43:47.038 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30789 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30790 (-137.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30781 (-137.3 uncal um), Max = 30796 (-137.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:43:47.038 -07 000000475 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30789, posNoise = 7, negNoise = 8
17-03-17 17:43:47.038 -07 000000475 INF: Z Motor: After move to -0.138123, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:47.038 -07 000000475 INF: Z Motor: Settle wait time = 1442 ms, measure time = 103 ms (allowed 150 ms), total time = 1545 ms
17-03-17 17:43:47.038 -07 000000475 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 17:43:47.088 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 17:43:47.088 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:43:47.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:47.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:47.088 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:47.088 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:47.088 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:43:47.088 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:47.088 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:43:47.088 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:43:47.098 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:43:47.098 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:43:47.108 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:43:47.108 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 17:43:47.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:43:47.158 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:43:47.358 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:43:47.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:43:47.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:43:47.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:43:47.398 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:43:47.398 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 17:43:47.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 17:43:47.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:43:47.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:47.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:43:47.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:43:47.498 -07 000000623 INF: Autofocus start
17-03-17 17:43:47.498 -07 000000623 INF: MeasureProfile start
17-03-17 17:43:47.498 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:47.498 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:47.508 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:43:47.508 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:43:47.508 -07 000000623 INF: MeasureProfile done
17-03-17 17:43:47.508 -07 000000623 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:43:47.508 -07 000000623 INF: Autofocus finished
17-03-17 17:43:47.708 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:43:47.708 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:43:47.708 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.138118419643813. ----------
17-03-17 17:43:47.708 -07 000000610 INF: Cycle	4	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:43:47.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28680, sync = True, waitForSettling = True)
17-03-17 17:43:47.718 -07 000000610 INF: Z Motor: Moving to -0.131289 mm, started at -0.138118 mm, distance = 6.83 um
17-03-17 17:43:47.718 -07 000000610 INF: FPGA: Xmit ZDACW 28680\n [Z Motor]
17-03-17 17:43:47.718 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:43:47.728 -07 000000610 INF: FPGA: 'ZDACW 28680' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:47.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:47.728 -07 000000475 INF: FPGA: Recv ZDACR 28680
17-03-17 17:43:47.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:47.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:43:47.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:47.888 -07 000000618 INF: FPGA: Recv ZSGSRD 29729
17-03-17 17:43:47.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:47.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:47.898 -07 000000475 INF: FPGA: Recv ZSGSRD 29728
17-03-17 17:43:47.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:47.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:47.908 -07 000000551 INF: FPGA: Recv ZSGSRD 29723
17-03-17 17:43:47.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:47.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:47.918 -07 000000501 INF: FPGA: Recv ZSGSRD 29728
17-03-17 17:43:47.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:47.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:47.928 -07 000000623 INF: FPGA: Recv ZSGSRD 29728
17-03-17 17:43:47.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:47.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:47.938 -07 000000501 INF: FPGA: Recv ZSGSRD 29733
17-03-17 17:43:47.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:47.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:47.948 -07 000000623 INF: FPGA: Recv ZSGSRD 29721
17-03-17 17:43:47.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:47.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:47.958 -07 000000501 INF: FPGA: Recv ZSGSRD 29729
17-03-17 17:43:47.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:47.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:47.968 -07 000000618 INF: FPGA: Recv ZSGSRD 29725
17-03-17 17:43:47.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:47.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:47.978 -07 000000438 INF: FPGA: Recv ZSGSRD 29723
17-03-17 17:43:47.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:47.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:47.988 -07 000000623 INF: FPGA: Recv ZPIEZORD 25211
17-03-17 17:43:47.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:47.998 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.376 V. Piezo Error = -9.9 V.
17-03-17 17:43:47.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29727 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29728 (-130.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29721 (-130.5 uncal um), Max = 29733 (-130.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:43:47.998 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29727, posNoise = 6, negNoise = 6
17-03-17 17:43:47.998 -07 000000610 INF: Z Motor: After move to -0.131289, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:47.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:43:47.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:47.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:47.998 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:43:47.998 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:43:47.998 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:47.998 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:47.998 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:43:47.998 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:47.998 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:43:47.998 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:43:47.998 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:43:47.998 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:43:47.998 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:43:47.998 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:43:48.008 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:43:48.008 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:43:48.008 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:43:48.008 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:43:48.008 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:43:48.008 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:43:48.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28857 150\n [Camera]
17-03-17 17:43:48.218 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:43:48.608 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:43:48.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:43:48.608 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:48.608 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:48.608 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 17:43:48.608 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:43:48.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:43:48.608 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:48.608 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:48.608 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 17:43:48.798 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28857 775
17-03-17 17:43:48.858 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.986717,
17-03-17 17:43:48.948 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:43:48.988 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:43:48.988 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:43:48.988 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:48.988 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:43:48.988 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:43:48.988 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:43:48.988 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:43:48.988 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:48.998 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:48.998 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:43:49.138 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:43:49.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:43:49.138 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:49.258 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:43:49.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:43:49.268 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:49.268 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 17:43:49.268 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:49.268 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:49.268 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:43:49.328 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:43:49.328 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:43:49.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28857 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-17 17:43:49.328 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:43:49.328 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.131295906349263. ------
17-03-17 17:43:49.338 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:49.338 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13778 mm
17-03-17 17:43:49.338 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:43:49.338 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 17:43:49.338 -07 000000438 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 17:43:49.338 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30098, sync = True, waitForSettling = False)
17-03-17 17:43:49.338 -07 000000627 INF: Z Motor: Moving to -0.137780 mm, started at -0.131296 mm, distance = -6.48 um
17-03-17 17:43:49.338 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:49.348 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:43:49.348 -07 000000627 INF: FPGA: Xmit ZDACW 30098\n [Z Motor]
17-03-17 17:43:49.348 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:43:49.358 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:49.358 -07 000000627 INF: FPGA: 'ZDACW 30098' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:43:49.358 -07 000000608 INF: FPGA: Recv YRDPOS 131190
17-03-17 17:43:49.368 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:43:49.368 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:43:49.368 -07 000000438 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:49.368 -07 000000438 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:43:49.368 -07 000000438 INF: Y Motor: Moving 1336 steps-11
17-03-17 17:43:49.378 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:49.378 -07 000000618 INF: FPGA: Recv ZDACR 30098
17-03-17 17:43:49.388 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:43:49.388 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:43:49.388 -07 000000627 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 17:43:49.578 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:43:49.578 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 230 ms overall
17-03-17 17:43:49.648 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:43:49.648 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:43:49.648 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:49.648 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:43:49.648 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 17:43:49.648 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:49.648 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:49.648 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:49.648 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 17:43:49.658 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:43:49.758 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 17:43:49.758 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 17:43:49.798 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:49.798 -07 000000608 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:43:49.808 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:43:49.808 -07 000000438 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:49.808 -07 000000438 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:43:49.808 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.835 mm, average velocity = 2.114 mm/sec
17-03-17 17:43:50.758 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:50.758 -07 000000608 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:43:50.768 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:50.768 -07 000000438 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:50.778 -07 000000438 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:43:50.788 -07 000000438 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:43:50.788 -07 000000438 INF: Y Motor: Moved to 64.8794 after 1443 ms (table move)
17-03-17 17:43:50.788 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137780 mm (DAC = 30098)
17-03-17 17:43:50.788 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:50.788 -07 000000486 INF: FPGA: Recv ZSGSRD 30747
17-03-17 17:43:50.798 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:43:50.798 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:50.798 -07 000000438 INF: FPGA: Recv ZSGSRD 30730
17-03-17 17:43:50.808 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:50.808 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:50.808 -07 000000486 INF: FPGA: Recv ZSGSRD 30737
17-03-17 17:43:50.818 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:50.818 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:50.818 -07 000000438 INF: FPGA: Recv ZSGSRD 30734
17-03-17 17:43:50.828 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:50.828 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:50.828 -07 000000608 INF: FPGA: Recv ZSGSRD 30743
17-03-17 17:43:50.838 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:50.838 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:50.838 -07 000000627 INF: FPGA: Recv ZSGSRD 30747
17-03-17 17:43:50.848 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:50.848 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:50.848 -07 000000480 INF: FPGA: Recv ZSGSRD 30736
17-03-17 17:43:50.858 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:50.858 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:50.858 -07 000000608 INF: FPGA: Recv ZSGSRD 30732
17-03-17 17:43:50.868 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:50.868 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:50.868 -07 000000438 INF: FPGA: Recv ZSGSRD 30733
17-03-17 17:43:50.878 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:50.878 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:50.878 -07 000000618 INF: FPGA: Recv ZSGSRD 30735
17-03-17 17:43:50.888 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:50.888 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:50.888 -07 000000438 INF: FPGA: Recv ZPIEZORD 26518
17-03-17 17:43:50.898 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:50.898 -07 000000501 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.593 V. Piezo Error = -9.3 V.
17-03-17 17:43:50.898 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30737 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30736 (-137.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30730 (-136.9 uncal um), Max = 30747 (-137.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:43:50.898 -07 000000501 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30737, posNoise = 10, negNoise = 7
17-03-17 17:43:50.898 -07 000000501 INF: Z Motor: After move to -0.137780, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:50.898 -07 000000501 INF: Z Motor: Settle wait time = 1446 ms, measure time = 107 ms (allowed 150 ms), total time = 1553 ms
17-03-17 17:43:50.898 -07 000000501 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:43:50.948 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 17:43:50.948 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:43:50.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:50.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:50.948 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:50.948 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:50.948 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:43:50.948 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:50.948 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:43:50.948 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:43:50.958 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:43:50.958 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:43:50.968 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 17:43:50.968 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 17:43:50.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:43:51.018 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:43:51.218 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:43:51.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:43:51.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:43:51.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:43:51.258 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:43:51.258 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:43:51.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 286 ms overall
17-03-17 17:43:51.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:43:51.338 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:51.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:43:51.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:43:51.358 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:51.358 -07 000000608 INF: Autofocus start
17-03-17 17:43:51.358 -07 000000608 INF: MeasureProfile start
17-03-17 17:43:51.358 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:51.368 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:43:51.368 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:43:51.368 -07 000000608 INF: MeasureProfile done
17-03-17 17:43:51.368 -07 000000608 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:43:51.368 -07 000000608 INF: Autofocus finished
17-03-17 17:43:51.528 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:43:51.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:43:51.568 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:43:51.568 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:43:51.568 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.137784360612442. ----------
17-03-17 17:43:51.568 -07 000000610 INF: Cycle	4	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:43:51.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28606, sync = True, waitForSettling = True)
17-03-17 17:43:51.578 -07 000000610 INF: Z Motor: Moving to -0.130950 mm, started at -0.137784 mm, distance = 6.83 um
17-03-17 17:43:51.578 -07 000000610 INF: FPGA: Xmit ZDACW 28606\n [Z Motor]
17-03-17 17:43:51.578 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 17:43:51.588 -07 000000610 INF: FPGA: 'ZDACW 28606' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:51.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:51.588 -07 000000480 INF: FPGA: Recv ZDACR 28606
17-03-17 17:43:51.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:51.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:43:51.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:51.748 -07 000000438 INF: FPGA: Recv ZSGSRD 29674
17-03-17 17:43:51.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:51.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:51.758 -07 000000608 INF: FPGA: Recv ZSGSRD 29679
17-03-17 17:43:51.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:51.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:51.768 -07 000000438 INF: FPGA: Recv ZSGSRD 29674
17-03-17 17:43:51.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:51.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:51.778 -07 000000627 INF: FPGA: Recv ZSGSRD 29677
17-03-17 17:43:51.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:43:51.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:51.788 -07 000000501 INF: FPGA: Recv ZSGSRD 29675
17-03-17 17:43:51.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:51.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:51.798 -07 000000627 INF: FPGA: Recv ZSGSRD 29674
17-03-17 17:43:51.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:51.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:51.808 -07 000000480 INF: FPGA: Recv ZSGSRD 29678
17-03-17 17:43:51.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:51.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:51.818 -07 000000618 INF: FPGA: Recv ZSGSRD 29673
17-03-17 17:43:51.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:51.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:51.828 -07 000000486 INF: FPGA: Recv ZSGSRD 29670
17-03-17 17:43:51.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:51.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:51.838 -07 000000501 INF: FPGA: Recv ZSGSRD 29677
17-03-17 17:43:51.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:51.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:51.848 -07 000000480 INF: FPGA: Recv ZPIEZORD 25187
17-03-17 17:43:51.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:51.858 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.365 V. Piezo Error = -9.8 V.
17-03-17 17:43:51.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29675 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29674 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29670 (-130.1 uncal um), Max = 29679 (-130.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:43:51.858 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29675, posNoise = 4, negNoise = 5
17-03-17 17:43:51.858 -07 000000610 INF: Z Motor: After move to -0.130950, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:51.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:43:51.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:51.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:51.858 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:51.858 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:51.858 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:43:51.858 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:51.858 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:43:51.858 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:43:51.858 -07 000000608 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:43:51.858 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:43:51.858 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:43:51.858 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:43:51.858 -07 000000608 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:43:51.858 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:43:51.868 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:43:51.868 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:43:51.868 -07 000000608 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:43:51.868 -07 000000608 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 17:43:51.868 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:43:51.868 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:43:51.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28783 150\n [Camera]
17-03-17 17:43:52.078 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 17:43:52.468 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:43:52.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:43:52.468 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:52.468 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:52.468 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 17:43:52.468 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:43:52.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:43:52.468 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:52.468 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:52.468 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 17:43:52.658 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28783 775
17-03-17 17:43:52.808 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:43:52.848 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:43:52.848 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:43:52.848 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:52.848 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:43:52.848 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 17:43:52.848 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:52.848 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:52.848 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:43:52.848 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:43:52.858 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:43:52.998 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:43:52.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:43:52.998 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:53.108 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:43:53.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:43:53.108 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:53.108 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:53.108 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-17 17:43:53.108 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:53.108 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:43:53.188 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:43:53.188 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:43:53.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28783 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-17 17:43:53.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:43:53.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87939453125, Z-Position -0.130961847317891. ------
17-03-17 17:43:53.188 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13764 mm
17-03-17 17:43:53.188 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:43:53.198 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:53.198 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 17:43:53.198 -07 000000459 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 17:43:53.198 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:53.198 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30067, sync = True, waitForSettling = False)
17-03-17 17:43:53.198 -07 000000618 INF: Z Motor: Moving to -0.137638 mm, started at -0.130962 mm, distance = -6.68 um
17-03-17 17:43:53.208 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:53.208 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:53.208 -07 000000486 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:43:53.218 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 17:43:53.218 -07 000000459 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:53.218 -07 000000459 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:43:53.218 -07 000000459 INF: Y Motor: Moving 1349 steps-27
17-03-17 17:43:53.218 -07 000000618 INF: FPGA: Xmit ZDACW 30067\n [Z Motor]
17-03-17 17:43:53.218 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:43:53.228 -07 000000618 INF: FPGA: 'ZDACW 30067' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:43:53.228 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:43:53.238 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:43:53.248 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:53.248 -07 000000608 INF: FPGA: Recv ZDACR 30067
17-03-17 17:43:53.258 -07 000000618 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:43:53.258 -07 000000618 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 17:43:53.428 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:43:53.428 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 17:43:53.488 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:43:53.488 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:43:53.488 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:53.488 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:43:53.488 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:43:53.488 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:53.498 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:53.498 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:53.498 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 498 ms.
17-03-17 17:43:53.498 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:43:53.608 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 17:43:53.608 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:43:53.638 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:53.648 -07 000000438 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:43:53.648 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:43:53.648 -07 000000459 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:53.648 -07 000000459 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 17:43:53.648 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 17:43:54.218 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.975845,
17-03-17 17:43:54.598 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:54.598 -07 000000501 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:43:54.608 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:54.608 -07 000000459 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:54.618 -07 000000459 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:43:54.618 -07 000000459 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:43:54.618 -07 000000459 INF: Y Motor: Moved to 65.7148 after 1426 ms (table move)
17-03-17 17:43:54.628 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137638 mm (DAC = 30067)
17-03-17 17:43:54.628 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:54.628 -07 000000459 INF: FPGA: Recv ZSGSRD 30723
17-03-17 17:43:54.638 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:43:54.638 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:54.638 -07 000000627 INF: FPGA: Recv ZSGSRD 30710
17-03-17 17:43:54.648 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:54.648 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:54.648 -07 000000627 INF: FPGA: Recv ZSGSRD 30712
17-03-17 17:43:54.658 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:54.658 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:54.658 -07 000000576 INF: FPGA: Recv ZSGSRD 30710
17-03-17 17:43:54.668 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:54.668 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:54.668 -07 000000576 INF: FPGA: Recv ZSGSRD 30717
17-03-17 17:43:54.678 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:54.678 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:54.678 -07 000000576 INF: FPGA: Recv ZSGSRD 30719
17-03-17 17:43:54.688 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:54.688 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:54.688 -07 000000576 INF: FPGA: Recv ZSGSRD 30720
17-03-17 17:43:54.698 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:54.698 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:54.698 -07 000000576 INF: FPGA: Recv ZSGSRD 30712
17-03-17 17:43:54.708 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:54.708 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:54.708 -07 000000576 INF: FPGA: Recv ZSGSRD 30713
17-03-17 17:43:54.718 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:54.718 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:54.718 -07 000000576 INF: FPGA: Recv ZSGSRD 30718
17-03-17 17:43:54.728 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:54.728 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:54.728 -07 000000576 INF: FPGA: Recv ZPIEZORD 26533
17-03-17 17:43:54.738 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:54.738 -07 000000561 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.588 V. Piezo Error = -9.2 V.
17-03-17 17:43:54.738 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30715 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30715 (-136.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30710 (-136.8 uncal um), Max = 30723 (-136.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:43:54.738 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30715, posNoise = 8, negNoise = 5
17-03-17 17:43:54.738 -07 000000561 INF: Z Motor: After move to -0.137638, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:54.738 -07 000000561 INF: Z Motor: Settle wait time = 1428 ms, measure time = 108 ms (allowed 150 ms), total time = 1536 ms
17-03-17 17:43:54.738 -07 000000561 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:43:54.788 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 17:43:54.788 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:43:54.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:54.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:54.788 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:54.788 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:54.788 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:43:54.788 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:54.788 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:43:54.788 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:43:54.798 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:43:54.798 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:43:54.808 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:43:54.808 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 17:43:54.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:43:54.858 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:43:55.058 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:43:55.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:43:55.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:43:55.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:43:55.088 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:43:55.098 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 17:43:55.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 17:43:55.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:43:55.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:55.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:43:55.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 17:43:55.198 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:55.198 -07 000000551 INF: Autofocus start
17-03-17 17:43:55.198 -07 000000551 INF: MeasureProfile start
17-03-17 17:43:55.198 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:55.208 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:43:55.208 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:43:55.208 -07 000000551 INF: MeasureProfile done
17-03-17 17:43:55.208 -07 000000551 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 17:43:55.208 -07 000000551 INF: Autofocus finished
17-03-17 17:43:55.408 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:43:55.408 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:43:55.408 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.137643027945323. ----------
17-03-17 17:43:55.408 -07 000000610 INF: Cycle	4	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:43:55.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28545, sync = True, waitForSettling = True)
17-03-17 17:43:55.418 -07 000000610 INF: Z Motor: Moving to -0.130671 mm, started at -0.137643 mm, distance = 6.97 um
17-03-17 17:43:55.418 -07 000000610 INF: FPGA: Xmit ZDACW 28545\n [Z Motor]
17-03-17 17:43:55.418 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 17:43:55.428 -07 000000610 INF: FPGA: 'ZDACW 28545' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:43:55.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:55.428 -07 000000433 INF: FPGA: Recv ZDACR 28545
17-03-17 17:43:55.438 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:55.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:43:55.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:55.588 -07 000000576 INF: FPGA: Recv ZSGSRD 29634
17-03-17 17:43:55.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:55.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:55.598 -07 000000433 INF: FPGA: Recv ZSGSRD 29638
17-03-17 17:43:55.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:55.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:55.608 -07 000000576 INF: FPGA: Recv ZSGSRD 29630
17-03-17 17:43:55.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:55.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:55.618 -07 000000438 INF: FPGA: Recv ZSGSRD 29630
17-03-17 17:43:55.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:55.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:55.628 -07 000000576 INF: FPGA: Recv ZSGSRD 29630
17-03-17 17:43:55.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:55.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:55.638 -07 000000480 INF: FPGA: Recv ZSGSRD 29629
17-03-17 17:43:55.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:55.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:55.648 -07 000000438 INF: FPGA: Recv ZSGSRD 29634
17-03-17 17:43:55.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:55.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:55.658 -07 000000501 INF: FPGA: Recv ZSGSRD 29628
17-03-17 17:43:55.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:55.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:55.668 -07 000000551 INF: FPGA: Recv ZSGSRD 29632
17-03-17 17:43:55.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:55.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:55.678 -07 000000480 INF: FPGA: Recv ZSGSRD 29636
17-03-17 17:43:55.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:55.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:55.688 -07 000000561 INF: FPGA: Recv ZPIEZORD 25156
17-03-17 17:43:55.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:55.698 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.356 V. Piezo Error = -9.8 V.
17-03-17 17:43:55.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29632 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29631 (-129.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29628 (-129.9 uncal um), Max = 29638 (-129.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:43:55.698 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29632, posNoise = 6, negNoise = 4
17-03-17 17:43:55.698 -07 000000610 INF: Z Motor: After move to -0.130671, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:55.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:43:55.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:55.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:55.698 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:55.698 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:55.698 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:43:55.698 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:43:55.698 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:43:55.698 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:55.708 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:43:55.708 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:43:55.708 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:43:55.708 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:43:55.708 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:43:55.708 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:43:55.708 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:43:55.708 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:43:55.718 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:43:55.718 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:43:55.718 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:43:55.718 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:43:55.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28722 150\n [Camera]
17-03-17 17:43:55.918 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:43:56.308 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:43:56.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:43:56.308 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:56.308 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:56.308 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:43:56.308 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:43:56.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:43:56.308 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:56.308 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:56.308 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 17:43:56.498 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28722 775
17-03-17 17:43:56.528 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:43:56.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:43:56.648 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:43:56.688 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:43:56.688 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:43:56.688 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:56.688 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:43:56.688 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 17:43:56.688 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:56.688 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:56.688 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:56.698 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:43:56.808 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 496 ms.
17-03-17 17:43:56.838 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:43:56.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:43:56.838 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:43:56.838 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:43:56.838 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:43:56.848 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:43:56.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:43:56.848 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:43:56.848 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:43:56.848 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-17 17:43:57.028 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:43:57.028 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:43:57.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28722 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-17 17:43:57.028 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:43:57.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71484375, Z-Position -0.130685606195796. ------
17-03-17 17:43:57.038 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13694 mm
17-03-17 17:43:57.038 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:43:57.038 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:57.038 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 17:43:57.038 -07 000000551 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 17:43:57.038 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:57.038 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29916, sync = True, waitForSettling = False)
17-03-17 17:43:57.038 -07 000000561 INF: Z Motor: Moving to -0.136947 mm, started at -0.130686 mm, distance = -6.26 um
17-03-17 17:43:57.048 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:43:57.048 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:57.048 -07 000000569 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:43:57.058 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:57.058 -07 000000551 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:57.058 -07 000000551 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:43:57.058 -07 000000551 INF: Y Motor: Moving 1340 steps-16
17-03-17 17:43:57.058 -07 000000561 INF: FPGA: Xmit ZDACW 29916\n [Z Motor]
17-03-17 17:43:57.058 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:43:57.068 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:43:57.068 -07 000000561 INF: FPGA: 'ZDACW 29916' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 17:43:57.078 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:43:57.088 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:57.088 -07 000000627 INF: FPGA: Recv ZDACR 29916
17-03-17 17:43:57.098 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:43:57.098 -07 000000561 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 17:43:57.218 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:43:57.218 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:43:57.218 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:57.218 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:43:57.228 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:43:57.228 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:57.228 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:57.228 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:43:57.228 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:43:57.238 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:43:57.268 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:43:57.268 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 17:43:57.448 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 17:43:57.448 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:43:57.488 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:57.488 -07 000000475 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:43:57.498 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:57.498 -07 000000551 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:57.498 -07 000000551 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:43:57.498 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 17:43:58.448 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:43:58.448 -07 000000475 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:43:58.458 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:58.458 -07 000000551 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:43:58.468 -07 000000551 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:43:58.468 -07 000000551 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:43:58.468 -07 000000551 INF: Y Motor: Moved to 66.5396 after 1433 ms (table move)
17-03-17 17:43:58.478 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136947 mm (DAC = 29916)
17-03-17 17:43:58.478 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:58.478 -07 000000438 INF: FPGA: Recv ZSGSRD 30618
17-03-17 17:43:58.488 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:43:58.488 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:58.488 -07 000000551 INF: FPGA: Recv ZSGSRD 30604
17-03-17 17:43:58.498 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:58.498 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:58.498 -07 000000501 INF: FPGA: Recv ZSGSRD 30607
17-03-17 17:43:58.508 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:58.508 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:58.508 -07 000000551 INF: FPGA: Recv ZSGSRD 30609
17-03-17 17:43:58.518 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:58.518 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:58.518 -07 000000501 INF: FPGA: Recv ZSGSRD 30616
17-03-17 17:43:58.528 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:58.528 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:58.528 -07 000000382 INF: FPGA: Recv ZSGSRD 30616
17-03-17 17:43:58.538 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:58.538 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:58.538 -07 000000551 INF: FPGA: Recv ZSGSRD 30605
17-03-17 17:43:58.548 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:58.548 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:58.548 -07 000000501 INF: FPGA: Recv ZSGSRD 30607
17-03-17 17:43:58.558 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:58.558 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:58.558 -07 000000382 INF: FPGA: Recv ZSGSRD 30605
17-03-17 17:43:58.568 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:58.568 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:58.568 -07 000000551 INF: FPGA: Recv ZSGSRD 30599
17-03-17 17:43:58.578 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:58.578 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:58.578 -07 000000382 INF: FPGA: Recv ZPIEZORD 26431
17-03-17 17:43:58.588 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:58.588 -07 000000433 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.565 V. Piezo Error = -9.2 V.
17-03-17 17:43:58.588 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30609 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30607 (-136.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30599 (-136.1 uncal um), Max = 30618 (-136.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:43:58.588 -07 000000433 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30609, posNoise = 9, negNoise = 10
17-03-17 17:43:58.588 -07 000000433 INF: Z Motor: After move to -0.136947, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:58.588 -07 000000433 INF: Z Motor: Settle wait time = 1432 ms, measure time = 108 ms (allowed 150 ms), total time = 1540 ms
17-03-17 17:43:58.588 -07 000000433 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:43:58.638 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 17:43:58.638 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:43:58.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:58.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:58.638 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:58.638 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:58.638 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:43:58.638 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:58.638 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:43:58.638 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:43:58.648 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:43:58.648 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:43:58.648 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:43:58.648 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:43:58.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:43:58.698 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:43:58.898 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:43:58.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:43:58.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:43:58.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:43:58.938 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:43:58.938 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 17:43:58.938 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 17:43:59.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:43:59.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:43:59.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:43:59.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:43:59.038 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:43:59.038 -07 000000459 INF: Autofocus start
17-03-17 17:43:59.038 -07 000000459 INF: MeasureProfile start
17-03-17 17:43:59.048 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:43:59.048 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 17:43:59.048 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:43:59.058 -07 000000459 INF: MeasureProfile done
17-03-17 17:43:59.058 -07 000000459 INF: X=48  Z correction [um]=0.2069503
17-03-17 17:43:59.058 -07 000000459 INF: Autofocus finished
17-03-17 17:43:59.248 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:43:59.248 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 17:43:59.248 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.136962061458296. ----------
17-03-17 17:43:59.248 -07 000000610 INF: Cycle	4	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:43:59.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28473, sync = True, waitForSettling = True)
17-03-17 17:43:59.258 -07 000000610 INF: Z Motor: Moving to -0.130341 mm, started at -0.136962 mm, distance = 6.62 um
17-03-17 17:43:59.268 -07 000000610 INF: FPGA: Xmit ZDACW 28473\n [Z Motor]
17-03-17 17:43:59.268 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 17:43:59.278 -07 000000610 INF: FPGA: 'ZDACW 28473' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:43:59.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:43:59.278 -07 000000480 INF: FPGA: Recv ZDACR 28473
17-03-17 17:43:59.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:59.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:43:59.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:59.438 -07 000000561 INF: FPGA: Recv ZSGSRD 29579
17-03-17 17:43:59.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:43:59.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:59.448 -07 000000433 INF: FPGA: Recv ZSGSRD 29583
17-03-17 17:43:59.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:59.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:59.458 -07 000000475 INF: FPGA: Recv ZSGSRD 29576
17-03-17 17:43:59.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:59.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:59.468 -07 000000551 INF: FPGA: Recv ZSGSRD 29580
17-03-17 17:43:59.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:59.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:59.478 -07 000000561 INF: FPGA: Recv ZSGSRD 29578
17-03-17 17:43:59.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:59.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:59.488 -07 000000433 INF: FPGA: Recv ZSGSRD 29578
17-03-17 17:43:59.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:59.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:59.498 -07 000000475 INF: FPGA: Recv ZSGSRD 29583
17-03-17 17:43:59.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:59.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:59.508 -07 000000623 INF: FPGA: Recv ZSGSRD 29581
17-03-17 17:43:59.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:59.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:59.518 -07 000000561 INF: FPGA: Recv ZSGSRD 29578
17-03-17 17:43:59.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:59.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:43:59.528 -07 000000433 INF: FPGA: Recv ZSGSRD 29585
17-03-17 17:43:59.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:59.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:43:59.538 -07 000000475 INF: FPGA: Recv ZPIEZORD 25070
17-03-17 17:43:59.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:43:59.548 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.345 V. Piezo Error = -9.9 V.
17-03-17 17:43:59.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29580 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29580 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29576 (-129.5 uncal um), Max = 29585 (-129.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:43:59.548 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29580, posNoise = 5, negNoise = 4
17-03-17 17:43:59.548 -07 000000610 INF: Z Motor: After move to -0.130341, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:43:59.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-17 17:43:59.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:43:59.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:43:59.548 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:43:59.548 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:43:59.548 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:43:59.548 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:43:59.548 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:43:59.548 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:43:59.548 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:43:59.548 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:43:59.548 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:43:59.548 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:43:59.558 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:43:59.558 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:43:59.558 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:43:59.558 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:43:59.568 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:43:59.568 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:43:59.568 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:43:59.568 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:43:59.578 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.969015,
17-03-17 17:43:59.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28650 150\n [Camera]
17-03-17 17:43:59.778 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 17:44:00.168 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:44:00.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:44:00.168 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:00.168 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:00.168 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:44:00.168 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:44:00.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:44:00.168 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:00.168 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:00.168 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 17:44:00.358 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28650 775
17-03-17 17:44:00.508 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:44:00.538 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:44:00.538 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:44:00.538 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:00.648 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 483 ms.
17-03-17 17:44:00.648 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 484 ms.
17-03-17 17:44:00.648 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:00.658 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 114 ms.
17-03-17 17:44:00.658 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 492 ms.
17-03-17 17:44:00.658 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:44:00.668 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 497 ms.
17-03-17 17:44:00.698 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:44:00.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:44:00.698 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:00.698 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:00.698 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:44:00.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:44:00.698 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:44:00.698 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:00.698 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:00.698 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-17 17:44:00.888 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:44:00.888 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:44:00.888 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28650 150' command took 3 ms to send, 1304 ms to get response, and 1320 ms overall
17-03-17 17:44:00.888 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:44:00.888 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.130351547164424. ------
17-03-17 17:44:00.888 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:00.888 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13719 mm
17-03-17 17:44:00.888 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:44:00.898 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29969, sync = True, waitForSettling = False)
17-03-17 17:44:00.898 -07 000000501 INF: Z Motor: Moving to -0.137189 mm, started at -0.130352 mm, distance = -6.84 um
17-03-17 17:44:00.898 -07 000000501 INF: FPGA: Xmit ZDACW 29969\n [Z Motor]
17-03-17 17:44:00.898 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 17:44:00.898 -07 000000576 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 17:44:00.908 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:01.078 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:44:01.078 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:44:01.078 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:01.078 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:44:01.078 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:44:01.078 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:01.078 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:44:01.088 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:44:01.088 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:44:01.088 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:44:01.098 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:01.098 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 17:44:01.098 -07 000000623 INF: FPGA: Recv YRDPOS 136274
17-03-17 17:44:01.098 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 181 ms to get response, and 195 ms overall
17-03-17 17:44:01.098 -07 000000576 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:01.098 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 201 ms to get response, and 202 ms overall
17-03-17 17:44:01.098 -07 000000501 INF: FPGA: 'ZDACW 29969' command took 0 ms to send, 191 ms to get response, and 195 ms overall
17-03-17 17:44:01.098 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:01.098 -07 000000623 INF: FPGA: Recv ZDACR 29969
17-03-17 17:44:01.098 -07 000000576 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:44:01.098 -07 000000576 INF: Y Motor: Moving 1348 steps-27
17-03-17 17:44:01.108 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:44:01.108 -07 000000501 INF: Z Motor: MoveAbsStepped took 205 ms (did NOT wait for settling yet))
17-03-17 17:44:01.108 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:44:01.118 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:44:01.308 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:44:01.308 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 17:44:01.488 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 17:44:01.488 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 17:44:01.518 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:01.528 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:44:01.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:44:01.528 -07 000000433 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:44:01.528 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:44:01.528 -07 000000576 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:01.528 -07 000000576 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 17:44:01.528 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.843 mm, average velocity = 2.156 mm/sec
17-03-17 17:44:02.478 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:02.478 -07 000000501 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:44:02.488 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:44:02.488 -07 000000576 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:02.498 -07 000000576 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:44:02.498 -07 000000576 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:44:02.498 -07 000000576 INF: Y Motor: Moved to 67.3726 after 1603 ms (table move)
17-03-17 17:44:02.508 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137189 mm (DAC = 29969)
17-03-17 17:44:02.508 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:02.508 -07 000000480 INF: FPGA: Recv ZSGSRD 30645
17-03-17 17:44:02.518 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:44:02.518 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:02.518 -07 000000480 INF: FPGA: Recv ZSGSRD 30641
17-03-17 17:44:02.528 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:02.528 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:02.528 -07 000000433 INF: FPGA: Recv ZSGSRD 30648
17-03-17 17:44:02.538 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:02.538 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:02.538 -07 000000433 INF: FPGA: Recv ZSGSRD 30637
17-03-17 17:44:02.548 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:02.548 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:02.548 -07 000000433 INF: FPGA: Recv ZSGSRD 30648
17-03-17 17:44:02.558 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:02.558 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:02.558 -07 000000480 INF: FPGA: Recv ZSGSRD 30653
17-03-17 17:44:02.568 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:02.568 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:02.568 -07 000000623 INF: FPGA: Recv ZSGSRD 30644
17-03-17 17:44:02.578 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:02.578 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:02.578 -07 000000501 INF: FPGA: Recv ZSGSRD 30643
17-03-17 17:44:02.588 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:02.588 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:02.588 -07 000000433 INF: FPGA: Recv ZSGSRD 30641
17-03-17 17:44:02.598 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:02.598 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:02.598 -07 000000501 INF: FPGA: Recv ZSGSRD 30645
17-03-17 17:44:02.608 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:02.608 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:02.608 -07 000000480 INF: FPGA: Recv ZPIEZORD 26461
17-03-17 17:44:02.618 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:02.618 -07 000000475 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.573 V. Piezo Error = -9.2 V.
17-03-17 17:44:02.618 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30644 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30644 (-136.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30637 (-136.3 uncal um), Max = 30653 (-136.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:44:02.618 -07 000000475 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30644, posNoise = 9, negNoise = 7
17-03-17 17:44:02.618 -07 000000475 INF: Z Motor: After move to -0.137189, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:02.618 -07 000000475 INF: Z Motor: Settle wait time = 1609 ms, measure time = 106 ms (allowed 150 ms), total time = 1715 ms
17-03-17 17:44:02.618 -07 000000475 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:44:02.668 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1770 ms
17-03-17 17:44:02.668 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:44:02.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:02.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:02.668 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:02.668 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:02.668 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:44:02.668 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:02.668 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:44:02.668 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:44:02.678 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:44:02.678 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:44:02.678 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:44:02.678 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:44:02.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:44:02.728 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:44:02.928 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:44:02.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:44:02.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:44:02.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) start.
17-03-17 17:44:02.968 -07 000000608 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:44:02.968 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:44:02.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 17:44:03.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 591793880, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:44:03.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:03.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:44:03.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:44:03.068 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:03.068 -07 000000501 INF: Autofocus start
17-03-17 17:44:03.068 -07 000000501 INF: MeasureProfile start
17-03-17 17:44:03.068 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:03.078 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:44:03.078 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:44:03.078 -07 000000501 INF: MeasureProfile done
17-03-17 17:44:03.078 -07 000000501 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:44:03.078 -07 000000501 INF: Autofocus finished
17-03-17 17:44:03.278 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:44:03.278 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:44:03.278 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.137186908883258. ----------
17-03-17 17:44:03.278 -07 000000610 INF: Cycle	4	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:44:03.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28476, sync = True, waitForSettling = True)
17-03-17 17:44:03.288 -07 000000610 INF: Z Motor: Moving to -0.130355 mm, started at -0.137187 mm, distance = 6.83 um
17-03-17 17:44:03.288 -07 000000610 INF: FPGA: Xmit ZDACW 28476\n [Z Motor]
17-03-17 17:44:03.288 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 17:44:03.298 -07 000000610 INF: FPGA: 'ZDACW 28476' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:44:03.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:03.298 -07 000000608 INF: FPGA: Recv ZDACR 28476
17-03-17 17:44:03.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:03.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:44:03.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:03.458 -07 000000501 INF: FPGA: Recv ZSGSRD 29579
17-03-17 17:44:03.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:03.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:03.468 -07 000000475 INF: FPGA: Recv ZSGSRD 29583
17-03-17 17:44:03.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:03.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:03.478 -07 000000501 INF: FPGA: Recv ZSGSRD 29581
17-03-17 17:44:03.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:03.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:03.488 -07 000000475 INF: FPGA: Recv ZSGSRD 29582
17-03-17 17:44:03.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:03.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:03.498 -07 000000618 INF: FPGA: Recv ZSGSRD 29576
17-03-17 17:44:03.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:03.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:03.508 -07 000000433 INF: FPGA: Recv ZSGSRD 29587
17-03-17 17:44:03.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:03.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:03.518 -07 000000618 INF: FPGA: Recv ZSGSRD 29583
17-03-17 17:44:03.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:03.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:03.528 -07 000000623 INF: FPGA: Recv ZSGSRD 29585
17-03-17 17:44:03.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:03.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:03.538 -07 000000475 INF: FPGA: Recv ZSGSRD 29584
17-03-17 17:44:03.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:03.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:03.548 -07 000000475 INF: FPGA: Recv ZSGSRD 29582
17-03-17 17:44:03.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:03.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:03.558 -07 000000480 INF: FPGA: Recv ZPIEZORD 25099
17-03-17 17:44:03.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:03.568 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.345 V. Piezo Error = -9.8 V.
17-03-17 17:44:03.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29582 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29582 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29576 (-129.5 uncal um), Max = 29587 (-129.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:44:03.568 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29582, posNoise = 5, negNoise = 6
17-03-17 17:44:03.568 -07 000000610 INF: Z Motor: After move to -0.130355, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:03.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:44:03.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:03.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:03.568 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:03.568 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:44:03.568 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:44:03.568 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:44:03.568 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:03.568 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:03.568 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:44:03.568 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:44:03.568 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:44:03.568 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:44:03.578 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:44:03.578 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:44:03.578 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:44:03.578 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:44:03.588 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:44:03.588 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:44:03.588 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:44:03.588 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:44:03.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28653 150\n [Camera]
17-03-17 17:44:03.788 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:44:04.178 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:44:04.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:44:04.178 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:04.178 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:04.178 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 17:44:04.178 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:44:04.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:44:04.188 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:04.188 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:04.188 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 17:44:04.368 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28653 775
17-03-17 17:44:04.518 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:44:04.558 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:44:04.558 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:44:04.558 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:04.558 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:44:04.558 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:44:04.558 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:44:04.558 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:44:04.558 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:04.568 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:44:04.578 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:44:04.708 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:44:04.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:44:04.708 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:04.708 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:44:04.708 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:04.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:44:04.708 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 17:44:04.708 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:04.708 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:04.718 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 17:44:04.898 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:44:04.898 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:44:04.898 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28653 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-17 17:44:04.898 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:44:04.898 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.130364395588708. ------
17-03-17 17:44:04.908 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:04.908 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13681 mm
17-03-17 17:44:04.908 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:44:04.908 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:04.908 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 17:44:04.908 -07 000000576 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 17:44:04.918 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29886, sync = True, waitForSettling = False)
17-03-17 17:44:04.918 -07 000000608 INF: Z Motor: Moving to -0.136809 mm, started at -0.130364 mm, distance = -6.44 um
17-03-17 17:44:04.918 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:04.918 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:44:04.918 -07 000000627 INF: FPGA: Recv YRDPOS 137980
17-03-17 17:44:04.928 -07 000000608 INF: FPGA: Xmit ZDACW 29886\n [Z Motor]
17-03-17 17:44:04.928 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:44:04.928 -07 000000576 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:04.928 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:44:04.928 -07 000000576 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:44:04.928 -07 000000576 INF: Y Motor: Moving 1343 steps-21
17-03-17 17:44:04.938 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:44:04.938 -07 000000608 INF: FPGA: 'ZDACW 29886' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:44:04.948 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:44:04.968 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:04.968 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.986717,
17-03-17 17:44:04.968 -07 000000438 INF: FPGA: Recv ZDACR 29886
17-03-17 17:44:04.978 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 17:44:04.978 -07 000000608 INF: Z Motor: MoveAbsStepped took 60 ms (did NOT wait for settling yet))
17-03-17 17:44:05.098 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 17:44:05.098 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:44:05.098 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:05.098 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 17:44:05.098 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:44:05.098 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:05.108 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:44:05.108 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 17:44:05.108 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:44:05.118 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 17:44:05.138 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:44:05.138 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 17:44:05.318 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 17:44:05.318 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 17:44:05.358 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:05.358 -07 000000438 INF: FPGA: Recv YRDPOS 139685
17-03-17 17:44:05.368 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:05.368 -07 000000576 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:05.368 -07 000000576 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 17:44:05.368 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.132 mm/sec
17-03-17 17:44:06.318 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:06.318 -07 000000501 INF: FPGA: Recv YRDPOS 139685
17-03-17 17:44:06.328 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:06.328 -07 000000576 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:06.338 -07 000000576 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:44:06.338 -07 000000576 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:44:06.338 -07 000000576 INF: Y Motor: Moved to 68.2056 after 1430 ms (table move)
17-03-17 17:44:06.348 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136809 mm (DAC = 29886)
17-03-17 17:44:06.348 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:06.348 -07 000000618 INF: FPGA: Recv ZSGSRD 30593
17-03-17 17:44:06.358 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:44:06.358 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:06.358 -07 000000576 INF: FPGA: Recv ZSGSRD 30586
17-03-17 17:44:06.368 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:06.368 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:06.368 -07 000000438 INF: FPGA: Recv ZSGSRD 30587
17-03-17 17:44:06.378 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:06.378 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:06.378 -07 000000501 INF: FPGA: Recv ZSGSRD 30586
17-03-17 17:44:06.388 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:06.388 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:06.388 -07 000000618 INF: FPGA: Recv ZSGSRD 30594
17-03-17 17:44:06.398 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:06.398 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:06.398 -07 000000438 INF: FPGA: Recv ZSGSRD 30585
17-03-17 17:44:06.408 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:06.408 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:06.408 -07 000000501 INF: FPGA: Recv ZSGSRD 30579
17-03-17 17:44:06.418 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:06.418 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:06.418 -07 000000438 INF: FPGA: Recv ZSGSRD 30583
17-03-17 17:44:06.428 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:06.428 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:06.428 -07 000000576 INF: FPGA: Recv ZSGSRD 30579
17-03-17 17:44:06.438 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:06.438 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:06.438 -07 000000438 INF: FPGA: Recv ZSGSRD 30584
17-03-17 17:44:06.448 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:06.448 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:06.448 -07 000000576 INF: FPGA: Recv ZPIEZORD 26399
17-03-17 17:44:06.458 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:06.458 -07 000000433 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.560 V. Piezo Error = -9.2 V.
17-03-17 17:44:06.458 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30586 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30586 (-136.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30579 (-136.0 uncal um), Max = 30594 (-136.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:44:06.458 -07 000000433 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30586, posNoise = 8, negNoise = 7
17-03-17 17:44:06.458 -07 000000433 INF: Z Motor: After move to -0.136809, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:06.458 -07 000000433 INF: Z Motor: Settle wait time = 1432 ms, measure time = 108 ms (allowed 150 ms), total time = 1540 ms
17-03-17 17:44:06.458 -07 000000433 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:44:06.508 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 17:44:06.508 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:44:06.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:06.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:06.508 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:06.508 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:44:06.508 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:06.508 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:06.518 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:44:06.518 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:44:06.518 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:44:06.518 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:44:06.528 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:44:06.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:44:06.528 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:44:06.528 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:44:06.528 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:44:06.578 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:44:06.778 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:44:06.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:44:06.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:44:06.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) start.
17-03-17 17:44:06.818 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:44:06.818 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:44:06.818 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 17:44:06.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:44:06.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:06.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:44:06.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 17:44:07.018 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:07.018 -07 000000501 INF: Autofocus start
17-03-17 17:44:07.018 -07 000000501 INF: MeasureProfile start
17-03-17 17:44:07.018 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:07.028 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:44:07.028 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:44:07.028 -07 000000501 INF: MeasureProfile done
17-03-17 17:44:07.028 -07 000000501 INF: X=-112  Z correction [um]=-0.5485987
17-03-17 17:44:07.028 -07 000000501 INF: Autofocus finished
17-03-17 17:44:07.228 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:44:07.228 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:44:07.228 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.136814304579036. ----------
17-03-17 17:44:07.228 -07 000000610 INF: Cycle	4	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:44:07.238 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28279, sync = True, waitForSettling = True)
17-03-17 17:44:07.238 -07 000000610 INF: Z Motor: Moving to -0.129453 mm, started at -0.136814 mm, distance = 7.36 um
17-03-17 17:44:07.238 -07 000000610 INF: FPGA: Xmit ZDACW 28279\n [Z Motor]
17-03-17 17:44:07.238 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:44:07.248 -07 000000610 INF: FPGA: 'ZDACW 28279' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:44:07.248 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:07.248 -07 000000501 INF: FPGA: Recv ZDACR 28279
17-03-17 17:44:07.258 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:07.258 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:44:07.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:07.408 -07 000000618 INF: FPGA: Recv ZSGSRD 29438
17-03-17 17:44:07.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:07.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:07.418 -07 000000433 INF: FPGA: Recv ZSGSRD 29439
17-03-17 17:44:07.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:07.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:07.428 -07 000000576 INF: FPGA: Recv ZSGSRD 29436
17-03-17 17:44:07.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:07.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:07.438 -07 000000438 INF: FPGA: Recv ZSGSRD 29438
17-03-17 17:44:07.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:07.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:07.448 -07 000000501 INF: FPGA: Recv ZSGSRD 29439
17-03-17 17:44:07.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:07.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:07.458 -07 000000438 INF: FPGA: Recv ZSGSRD 29446
17-03-17 17:44:07.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:07.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:07.468 -07 000000618 INF: FPGA: Recv ZSGSRD 29441
17-03-17 17:44:07.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:07.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:07.478 -07 000000501 INF: FPGA: Recv ZSGSRD 29442
17-03-17 17:44:07.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:07.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:07.488 -07 000000438 INF: FPGA: Recv ZSGSRD 29440
17-03-17 17:44:07.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:07.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:07.498 -07 000000486 INF: FPGA: Recv ZSGSRD 29441
17-03-17 17:44:07.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:07.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:07.508 -07 000000576 INF: FPGA: Recv ZPIEZORD 24943
17-03-17 17:44:07.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:07.518 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.315 V. Piezo Error = -9.9 V.
17-03-17 17:44:07.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29440 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29440 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29436 (-128.6 uncal um), Max = 29446 (-128.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:44:07.518 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29440, posNoise = 6, negNoise = 4
17-03-17 17:44:07.518 -07 000000610 INF: Z Motor: After move to -0.129453, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:07.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:44:07.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:07.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:07.518 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:07.518 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:07.518 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:44:07.518 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:44:07.518 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:44:07.518 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:07.518 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:44:07.518 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:44:07.518 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:44:07.518 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:44:07.528 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:44:07.528 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:44:07.528 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:44:07.528 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:44:07.538 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:44:07.538 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:44:07.538 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:44:07.538 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:44:07.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28456 150\n [Camera]
17-03-17 17:44:07.738 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:44:08.128 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:44:08.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:44:08.128 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:08.128 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:08.128 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 17:44:08.128 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:44:08.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:44:08.128 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:08.128 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:08.128 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 17:44:08.318 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28456 775
17-03-17 17:44:08.468 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:44:08.508 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:44:08.508 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:44:08.508 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:08.508 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:44:08.508 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:44:08.508 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:08.508 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:44:08.508 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:44:08.508 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:44:08.518 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:44:08.658 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:44:08.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:44:08.658 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:08.658 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:08.658 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 17:44:08.658 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:44:08.658 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:44:08.658 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:08.658 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:08.658 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 17:44:08.848 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:44:08.848 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:44:08.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28456 150' command took 4 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:44:08.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:44:08.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.129452157464578. ------
17-03-17 17:44:08.858 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13595 mm
17-03-17 17:44:08.858 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:44:08.858 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:08.858 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29697, sync = True, waitForSettling = False)
17-03-17 17:44:08.858 -07 000000618 INF: Z Motor: Moving to -0.135944 mm, started at -0.129452 mm, distance = -6.49 um
17-03-17 17:44:08.858 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 17:44:08.858 -07 000000576 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 17:44:08.858 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:08.868 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:44:08.868 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:08.868 -07 000000459 INF: FPGA: Recv YRDPOS 139685
17-03-17 17:44:08.878 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:44:08.878 -07 000000576 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:08.878 -07 000000576 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:44:08.878 -07 000000576 INF: Y Motor: Moving 1339 steps-14
17-03-17 17:44:08.878 -07 000000618 INF: FPGA: Xmit ZDACW 29697\n [Z Motor]
17-03-17 17:44:08.878 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 17:44:08.888 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:44:08.888 -07 000000618 INF: FPGA: 'ZDACW 29697' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:44:08.898 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:44:08.908 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:08.908 -07 000000501 INF: FPGA: Recv ZDACR 29697
17-03-17 17:44:08.918 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:44:08.918 -07 000000618 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 17:44:09.038 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:44:09.038 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:44:09.038 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:09.038 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:44:09.038 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:44:09.038 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:09.048 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:44:09.048 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:44:09.048 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:44:09.048 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:44:09.088 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:44:09.088 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:44:09.268 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 17:44:09.268 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:44:09.308 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:09.308 -07 000000433 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:44:09.318 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:44:09.318 -07 000000576 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:09.318 -07 000000576 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 17:44:09.318 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec
17-03-17 17:44:10.268 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:10.268 -07 000000569 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:44:10.278 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:10.278 -07 000000576 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:10.298 -07 000000576 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:44:10.298 -07 000000576 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:44:10.298 -07 000000576 INF: Y Motor: Moved to 69.0278 after 1435 ms (table move)
17-03-17 17:44:10.298 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135944 mm (DAC = 29697)
17-03-17 17:44:10.298 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:10.298 -07 000000433 INF: FPGA: Recv ZSGSRD 30449
17-03-17 17:44:10.308 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:44:10.308 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:10.308 -07 000000576 INF: FPGA: Recv ZSGSRD 30448
17-03-17 17:44:10.318 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:10.318 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:10.318 -07 000000569 INF: FPGA: Recv ZSGSRD 30448
17-03-17 17:44:10.328 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:10.338 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:10.338 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.98264,
17-03-17 17:44:10.338 -07 000000501 INF: FPGA: Recv ZSGSRD 30459
17-03-17 17:44:10.348 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:44:10.348 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:10.348 -07 000000576 INF: FPGA: Recv ZSGSRD 30451
17-03-17 17:44:10.358 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:10.368 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:10.368 -07 000000618 INF: FPGA: Recv ZSGSRD 30448
17-03-17 17:44:10.378 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:44:10.378 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:10.378 -07 000000433 INF: FPGA: Recv ZSGSRD 30448
17-03-17 17:44:10.388 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:10.408 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:10.408 -07 000000569 INF: FPGA: Recv ZSGSRD 30458
17-03-17 17:44:10.418 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:44:10.428 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:10.428 -07 000000618 INF: FPGA: Recv ZSGSRD 30454
17-03-17 17:44:10.438 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:44:10.438 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:10.438 -07 000000486 INF: FPGA: Recv ZSGSRD 30451
17-03-17 17:44:10.448 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:10.448 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:10.448 -07 000000459 INF: FPGA: Recv ZPIEZORD 26255
17-03-17 17:44:10.458 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:10.458 -07 000000438 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.531 V. Piezo Error = -9.2 V.
17-03-17 17:44:10.458 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30451 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30450 (-135.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30448 (-135.1 uncal um), Max = 30459 (-135.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:44:10.458 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30451, posNoise = 8, negNoise = 3
17-03-17 17:44:10.458 -07 000000438 INF: Z Motor: After move to -0.135944, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:10.458 -07 000000438 INF: Z Motor: Settle wait time = 1438 ms, measure time = 155 ms (allowed 150 ms), total time = 1593 ms
17-03-17 17:44:10.458 -07 000000438 INF: Z Motor: Warning: Actual position measuring time = 155 ms, longer than max expected time of 150 ms
17-03-17 17:44:10.458 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 17:44:10.458 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:44:10.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:10.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:10.458 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:10.458 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:10.458 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:44:10.458 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:10.458 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:44:10.468 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:44:10.468 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:44:10.468 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:44:10.478 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:44:10.478 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 17:44:10.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:44:10.518 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:44:10.718 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:44:10.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:44:10.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:44:10.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-17 17:44:10.758 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:44:10.758 -07 000000438 INF: FPGA: Recv CAMSNAP
17-03-17 17:44:10.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 17:44:10.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 17:44:10.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:10.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:44:10.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 17:44:10.858 -07 000000438 INF: Autofocus start
17-03-17 17:44:10.858 -07 000000438 INF: MeasureProfile start
17-03-17 17:44:10.858 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:10.858 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:10.868 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:44:10.868 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:44:10.868 -07 000000438 INF: MeasureProfile done
17-03-17 17:44:10.868 -07 000000438 INF: X=64  Z correction [um]=0.2839165
17-03-17 17:44:10.868 -07 000000438 INF: Autofocus finished
17-03-17 17:44:11.068 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:44:11.068 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:44:11.068 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.135947035939898. ----------
17-03-17 17:44:11.068 -07 000000610 INF: Cycle	4	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:44:11.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28272, sync = True, waitForSettling = True)
17-03-17 17:44:11.078 -07 000000610 INF: Z Motor: Moving to -0.129421 mm, started at -0.135947 mm, distance = 6.53 um
17-03-17 17:44:11.078 -07 000000610 INF: FPGA: Xmit ZDACW 28272\n [Z Motor]
17-03-17 17:44:11.078 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:44:11.088 -07 000000610 INF: FPGA: 'ZDACW 28272' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:11.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:11.088 -07 000000438 INF: FPGA: Recv ZDACR 28272
17-03-17 17:44:11.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:11.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:44:11.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:11.248 -07 000000618 INF: FPGA: Recv ZSGSRD 29435
17-03-17 17:44:11.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:44:11.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:11.258 -07 000000486 INF: FPGA: Recv ZSGSRD 29437
17-03-17 17:44:11.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:11.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:11.268 -07 000000486 INF: FPGA: Recv ZSGSRD 29439
17-03-17 17:44:11.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:11.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:11.278 -07 000000438 INF: FPGA: Recv ZSGSRD 29436
17-03-17 17:44:11.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:11.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:11.288 -07 000000438 INF: FPGA: Recv ZSGSRD 29439
17-03-17 17:44:11.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:11.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:11.298 -07 000000459 INF: FPGA: Recv ZSGSRD 29430
17-03-17 17:44:11.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:11.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:11.308 -07 000000486 INF: FPGA: Recv ZSGSRD 29440
17-03-17 17:44:11.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:11.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:11.318 -07 000000438 INF: FPGA: Recv ZSGSRD 29440
17-03-17 17:44:11.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:11.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:11.328 -07 000000486 INF: FPGA: Recv ZSGSRD 29436
17-03-17 17:44:11.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:11.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:11.338 -07 000000618 INF: FPGA: Recv ZSGSRD 29432
17-03-17 17:44:11.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:11.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:11.348 -07 000000459 INF: FPGA: Recv ZPIEZORD 24938
17-03-17 17:44:11.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:11.358 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.314 V. Piezo Error = -9.9 V.
17-03-17 17:44:11.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29436 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29436 (-128.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29430 (-128.6 uncal um), Max = 29440 (-128.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:44:11.358 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29436, posNoise = 4, negNoise = 6
17-03-17 17:44:11.358 -07 000000610 INF: Z Motor: After move to -0.129421, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:11.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-17 17:44:11.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:11.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:11.358 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:11.358 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:44:11.358 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:44:11.358 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:44:11.358 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:11.358 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:11.358 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:44:11.358 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:44:11.358 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:44:11.358 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:44:11.368 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:44:11.368 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:44:11.368 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:44:11.368 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:44:11.378 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:44:11.378 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:44:11.378 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:44:11.378 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:44:11.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28449 150\n [Camera]
17-03-17 17:44:11.528 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:44:11.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:44:11.578 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:44:11.978 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:44:11.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:44:11.978 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:11.978 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:11.978 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 17:44:11.978 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:44:11.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:44:11.978 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:11.978 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:11.978 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 17:44:12.168 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28449 775
17-03-17 17:44:12.318 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:44:12.348 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:44:12.348 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:44:12.348 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:12.358 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:44:12.358 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:44:12.358 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:44:12.358 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:44:12.358 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:12.358 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:44:12.368 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:44:12.508 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:44:12.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:44:12.508 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:12.508 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:12.508 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 17:44:12.508 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:44:12.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:44:12.508 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:12.508 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:12.508 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 17:44:12.698 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:44:12.698 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:44:12.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28449 150' command took 2 ms to send, 1303 ms to get response, and 1319 ms overall
17-03-17 17:44:12.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:44:12.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02783203125, Z-Position -0.129426460616011. ------
17-03-17 17:44:12.698 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:12.698 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13574 mm
17-03-17 17:44:12.698 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:44:12.708 -07 000000569 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:12.708 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:44:12.708 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 17:44:12.708 -07 000000501 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 17:44:12.708 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:44:12.708 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29651, sync = True, waitForSettling = False)
17-03-17 17:44:12.708 -07 000000627 INF: Z Motor: Moving to -0.135734 mm, started at -0.129426 mm, distance = -6.31 um
17-03-17 17:44:12.718 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:12.718 -07 000000569 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:44:12.728 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 17:44:12.728 -07 000000501 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:12.728 -07 000000501 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:44:12.728 -07 000000501 INF: Y Motor: Moving 1352 steps-30
17-03-17 17:44:12.728 -07 000000627 INF: FPGA: Xmit ZDACW 29651\n [Z Motor]
17-03-17 17:44:12.728 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 17:44:12.738 -07 000000627 INF: FPGA: 'ZDACW 29651' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 17:44:12.738 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:12.738 -07 000000480 INF: FPGA: Recv ZDACR 29651
17-03-17 17:44:12.748 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:44:12.748 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:12.748 -07 000000627 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 17:44:12.898 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 17:44:12.898 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:44:12.898 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:12.898 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 17:44:12.898 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 17:44:12.898 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:12.898 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:44:12.908 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 17:44:12.908 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 17:44:12.908 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 17:44:12.908 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:44:12.908 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 17:44:13.128 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 17:44:13.128 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 400 ms overall
17-03-17 17:44:13.158 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:13.158 -07 000000623 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:44:13.168 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:44:13.168 -07 000000501 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:13.168 -07 000000501 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 17:44:13.168 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.845 mm, average velocity = 2.112 mm/sec
17-03-17 17:44:14.118 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:14.118 -07 000000618 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:44:14.128 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:14.128 -07 000000501 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:14.148 -07 000000501 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:44:14.148 -07 000000501 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:44:14.148 -07 000000501 INF: Y Motor: Moved to 69.8638 after 1437 ms (table move)
17-03-17 17:44:14.148 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135734 mm (DAC = 29651)
17-03-17 17:44:14.148 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:14.148 -07 000000486 INF: FPGA: Recv ZSGSRD 30423
17-03-17 17:44:14.158 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:44:14.158 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:14.158 -07 000000561 INF: FPGA: Recv ZSGSRD 30422
17-03-17 17:44:14.168 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:14.168 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:14.168 -07 000000569 INF: FPGA: Recv ZSGSRD 30419
17-03-17 17:44:14.178 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:14.178 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:14.178 -07 000000438 INF: FPGA: Recv ZSGSRD 30414
17-03-17 17:44:14.188 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:14.188 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:14.188 -07 000000501 INF: FPGA: Recv ZSGSRD 30418
17-03-17 17:44:14.198 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:14.198 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:14.198 -07 000000561 INF: FPGA: Recv ZSGSRD 30414
17-03-17 17:44:14.208 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:14.208 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:14.208 -07 000000438 INF: FPGA: Recv ZSGSRD 30413
17-03-17 17:44:14.218 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:14.218 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:14.218 -07 000000486 INF: FPGA: Recv ZSGSRD 30423
17-03-17 17:44:14.228 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:14.228 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:14.228 -07 000000561 INF: FPGA: Recv ZSGSRD 30424
17-03-17 17:44:14.238 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:14.238 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:14.238 -07 000000501 INF: FPGA: Recv ZSGSRD 30424
17-03-17 17:44:14.248 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:14.248 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:14.248 -07 000000486 INF: FPGA: Recv ZPIEZORD 26219
17-03-17 17:44:14.258 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:14.258 -07 000000382 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.524 V. Piezo Error = -9.2 V.
17-03-17 17:44:14.258 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30419 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30420 (-135.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30413 (-134.9 uncal um), Max = 30424 (-135.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:44:14.258 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30419, posNoise = 5, negNoise = 6
17-03-17 17:44:14.258 -07 000000382 INF: Z Motor: After move to -0.135734, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:14.258 -07 000000382 INF: Z Motor: Settle wait time = 1440 ms, measure time = 106 ms (allowed 150 ms), total time = 1546 ms
17-03-17 17:44:14.258 -07 000000382 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:44:14.308 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 17:44:14.308 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:44:14.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:14.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:14.308 -07 000000608 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:14.308 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:14.308 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:44:14.308 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:14.318 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:44:14.318 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:44:14.318 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:44:14.318 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:44:14.328 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:44:14.328 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 17:44:14.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:44:14.378 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 17:44:14.578 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 17:44:14.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 17:44:14.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:44:14.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 17:44:14.618 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:44:14.618 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 17:44:14.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 17:44:14.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 120 ms.
17-03-17 17:44:14.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:14.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:44:14.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 17:44:14.718 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:14.718 -07 000000486 INF: Autofocus start
17-03-17 17:44:14.718 -07 000000486 INF: MeasureProfile start
17-03-17 17:44:14.718 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:14.728 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:44:14.728 -07 000000569 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:44:14.728 -07 000000486 INF: MeasureProfile done
17-03-17 17:44:14.728 -07 000000486 INF: X=32  Z correction [um]=0.1299841
17-03-17 17:44:14.728 -07 000000486 INF: Autofocus finished
17-03-17 17:44:14.928 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:44:14.928 -07 000000569 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:44:14.928 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.135741461151362. ----------
17-03-17 17:44:14.928 -07 000000610 INF: Cycle	4	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:44:14.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28192, sync = True, waitForSettling = True)
17-03-17 17:44:14.938 -07 000000610 INF: Z Motor: Moving to -0.129055 mm, started at -0.135741 mm, distance = 6.69 um
17-03-17 17:44:14.938 -07 000000610 INF: FPGA: Xmit ZDACW 28192\n [Z Motor]
17-03-17 17:44:14.938 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 17:44:14.948 -07 000000610 INF: FPGA: 'ZDACW 28192' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:14.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:14.948 -07 000000475 INF: FPGA: Recv ZDACR 28192
17-03-17 17:44:14.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:14.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:44:15.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:15.108 -07 000000438 INF: FPGA: Recv ZSGSRD 29376
17-03-17 17:44:15.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:15.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:15.118 -07 000000569 INF: FPGA: Recv ZSGSRD 29384
17-03-17 17:44:15.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:15.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:15.128 -07 000000438 INF: FPGA: Recv ZSGSRD 29377
17-03-17 17:44:15.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:15.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:15.138 -07 000000569 INF: FPGA: Recv ZSGSRD 29377
17-03-17 17:44:15.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:15.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:15.148 -07 000000475 INF: FPGA: Recv ZSGSRD 29374
17-03-17 17:44:15.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:15.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:15.158 -07 000000438 INF: FPGA: Recv ZSGSRD 29383
17-03-17 17:44:15.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:15.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:15.168 -07 000000475 INF: FPGA: Recv ZSGSRD 29382
17-03-17 17:44:15.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:15.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:15.178 -07 000000438 INF: FPGA: Recv ZSGSRD 29378
17-03-17 17:44:15.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:15.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:15.188 -07 000000627 INF: FPGA: Recv ZSGSRD 29382
17-03-17 17:44:15.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:15.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:15.198 -07 000000475 INF: FPGA: Recv ZSGSRD 29377
17-03-17 17:44:15.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:15.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:15.208 -07 000000438 INF: FPGA: Recv ZPIEZORD 24882
17-03-17 17:44:15.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:15.218 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.302 V. Piezo Error = -9.9 V.
17-03-17 17:44:15.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29379 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29378 (-128.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29374 (-128.3 uncal um), Max = 29384 (-128.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:44:15.218 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29379, posNoise = 5, negNoise = 5
17-03-17 17:44:15.218 -07 000000610 INF: Z Motor: After move to -0.129055, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:15.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:44:15.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:15.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:15.218 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:15.218 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:15.218 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:44:15.218 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:15.218 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:44:15.218 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:44:15.218 -07 000000569 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:44:15.218 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:44:15.218 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:44:15.218 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:44:15.218 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:44:15.218 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:44:15.218 -07 000000569 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:44:15.218 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:44:15.228 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:44:15.228 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 17:44:15.228 -07 000000569 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:44:15.228 -07 000000569 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:44:15.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28369 150\n [Camera]
17-03-17 17:44:15.438 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:44:15.748 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.988112,
17-03-17 17:44:15.828 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:44:15.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:44:15.828 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:15.828 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:15.828 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 17:44:15.828 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:44:15.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:44:15.828 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:15.828 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:15.828 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 17:44:16.018 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28369 775
17-03-17 17:44:16.168 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:44:16.208 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:44:16.208 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:44:16.208 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:16.208 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:44:16.208 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:44:16.208 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:16.208 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:44:16.208 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:44:16.208 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:44:16.218 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:44:16.358 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:44:16.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:44:16.358 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:16.488 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:44:16.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:44:16.488 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:16.488 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:16.488 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 17:44:16.498 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:16.498 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 17:44:16.528 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:44:16.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:44:16.548 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 17:44:16.548 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:44:16.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28369 150' command took 2 ms to send, 1308 ms to get response, and 1315 ms overall
17-03-17 17:44:16.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:44:16.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86376953125, Z-Position -0.12906028052393. ------
17-03-17 17:44:16.558 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:16.558 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13547 mm
17-03-17 17:44:16.558 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:44:16.558 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 17:44:16.558 -07 000000486 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 17:44:16.558 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:16.558 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 29594, sync = True, waitForSettling = False)
17-03-17 17:44:16.558 -07 000000459 INF: Z Motor: Moving to -0.135473 mm, started at -0.129060 mm, distance = -6.41 um
17-03-17 17:44:16.568 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:44:16.568 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:16.568 -07 000000561 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:44:16.578 -07 000000459 INF: FPGA: Xmit ZDACW 29594\n [Z Motor]
17-03-17 17:44:16.578 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:44:16.578 -07 000000486 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:16.578 -07 000000486 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:44:16.578 -07 000000486 INF: Y Motor: Moving 1342 steps-18
17-03-17 17:44:16.578 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 17:44:16.588 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:44:16.588 -07 000000459 INF: FPGA: 'ZDACW 29594' command took 3 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 17:44:16.598 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:44:16.608 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:16.608 -07 000000561 INF: FPGA: Recv ZDACR 29594
17-03-17 17:44:16.618 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:44:16.618 -07 000000459 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 17:44:16.788 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:44:16.788 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:44:16.868 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 17:44:16.868 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 17:44:16.868 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:16.868 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:44:16.868 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:44:16.868 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:44:16.868 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:16.878 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:44:16.878 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 17:44:16.878 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:44:16.968 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 17:44:16.968 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 17:44:17.008 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:17.008 -07 000000433 INF: FPGA: Recv YRDPOS 144770
17-03-17 17:44:17.018 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:17.018 -07 000000486 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:17.018 -07 000000486 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 17:44:17.018 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-17 17:44:17.968 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:17.968 -07 000000459 INF: FPGA: Recv YRDPOS 144771
17-03-17 17:44:17.978 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:44:17.978 -07 000000486 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:17.988 -07 000000486 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:44:17.988 -07 000000486 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:44:17.988 -07 000000486 INF: Y Motor: Moved to 70.6890 after 1432 ms (table move)
17-03-17 17:44:17.998 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135473 mm (DAC = 29594)
17-03-17 17:44:17.998 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:17.998 -07 000000486 INF: FPGA: Recv ZSGSRD 30382
17-03-17 17:44:18.008 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:44:18.008 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:18.008 -07 000000475 INF: FPGA: Recv ZSGSRD 30371
17-03-17 17:44:18.018 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:18.018 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:18.018 -07 000000475 INF: FPGA: Recv ZSGSRD 30380
17-03-17 17:44:18.028 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:18.028 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:18.028 -07 000000486 INF: FPGA: Recv ZSGSRD 30379
17-03-17 17:44:18.038 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:18.038 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:18.038 -07 000000486 INF: FPGA: Recv ZSGSRD 30382
17-03-17 17:44:18.048 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:18.048 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:18.048 -07 000000623 INF: FPGA: Recv ZSGSRD 30376
17-03-17 17:44:18.058 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:44:18.058 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:18.058 -07 000000623 INF: FPGA: Recv ZSGSRD 30376
17-03-17 17:44:18.068 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:18.068 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:18.068 -07 000000623 INF: FPGA: Recv ZSGSRD 30378
17-03-17 17:44:18.078 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:18.078 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:18.078 -07 000000623 INF: FPGA: Recv ZSGSRD 30376
17-03-17 17:44:18.088 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:18.088 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:18.088 -07 000000623 INF: FPGA: Recv ZSGSRD 30379
17-03-17 17:44:18.098 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:18.098 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:18.098 -07 000000501 INF: FPGA: Recv ZPIEZORD 26184
17-03-17 17:44:18.108 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:18.108 -07 000000627 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.516 V. Piezo Error = -9.2 V.
17-03-17 17:44:18.108 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30378 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30378 (-134.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30371 (-134.6 uncal um), Max = 30382 (-134.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:44:18.108 -07 000000627 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30378, posNoise = 4, negNoise = 7
17-03-17 17:44:18.108 -07 000000627 INF: Z Motor: After move to -0.135473, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:18.108 -07 000000627 INF: Z Motor: Settle wait time = 1433 ms, measure time = 109 ms (allowed 150 ms), total time = 1542 ms
17-03-17 17:44:18.108 -07 000000627 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 17:44:18.158 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 17:44:18.158 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:44:18.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:18.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:18.158 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:18.158 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:18.158 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:44:18.158 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:18.158 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:44:18.158 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:44:18.168 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:44:18.168 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:44:18.168 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:44:18.178 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 17:44:18.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:44:18.218 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:44:18.418 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:44:18.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:44:18.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:44:18.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 17:44:18.458 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:44:18.458 -07 000000569 INF: FPGA: Recv CAMSNAP
17-03-17 17:44:18.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 286 ms overall
17-03-17 17:44:18.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:44:18.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:18.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:44:18.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 17:44:18.658 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:18.658 -07 000000433 INF: Autofocus start
17-03-17 17:44:18.658 -07 000000433 INF: MeasureProfile start
17-03-17 17:44:18.658 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:18.668 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:44:18.668 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:44:18.668 -07 000000433 INF: MeasureProfile done
17-03-17 17:44:18.668 -07 000000433 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:44:18.668 -07 000000433 INF: Autofocus finished
17-03-17 17:44:18.868 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:44:18.868 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:44:18.868 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.135478068453549. ----------
17-03-17 17:44:18.868 -07 000000610 INF: Cycle	4	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:44:18.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28101, sync = True, waitForSettling = True)
17-03-17 17:44:18.878 -07 000000610 INF: Z Motor: Moving to -0.128638 mm, started at -0.135478 mm, distance = 6.84 um
17-03-17 17:44:18.878 -07 000000610 INF: FPGA: Xmit ZDACW 28101\n [Z Motor]
17-03-17 17:44:18.878 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 17:44:18.888 -07 000000610 INF: FPGA: 'ZDACW 28101' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:44:18.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:18.888 -07 000000486 INF: FPGA: Recv ZDACR 28101
17-03-17 17:44:18.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:18.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:44:19.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:19.048 -07 000000459 INF: FPGA: Recv ZSGSRD 29315
17-03-17 17:44:19.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:19.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:19.058 -07 000000486 INF: FPGA: Recv ZSGSRD 29311
17-03-17 17:44:19.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:19.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:19.068 -07 000000576 INF: FPGA: Recv ZSGSRD 29316
17-03-17 17:44:19.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:19.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:19.078 -07 000000486 INF: FPGA: Recv ZSGSRD 29313
17-03-17 17:44:19.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:19.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:19.088 -07 000000486 INF: FPGA: Recv ZSGSRD 29317
17-03-17 17:44:19.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:19.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:19.098 -07 000000486 INF: FPGA: Recv ZSGSRD 29313
17-03-17 17:44:19.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:19.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:19.108 -07 000000486 INF: FPGA: Recv ZSGSRD 29314
17-03-17 17:44:19.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:19.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:19.118 -07 000000486 INF: FPGA: Recv ZSGSRD 29315
17-03-17 17:44:19.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:19.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:19.128 -07 000000486 INF: FPGA: Recv ZSGSRD 29315
17-03-17 17:44:19.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:19.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:19.138 -07 000000576 INF: FPGA: Recv ZSGSRD 29310
17-03-17 17:44:19.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:19.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:19.148 -07 000000576 INF: FPGA: Recv ZPIEZORD 24816
17-03-17 17:44:19.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:19.158 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.288 V. Piezo Error = -9.9 V.
17-03-17 17:44:19.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29314 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29314 (-127.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29310 (-127.8 uncal um), Max = 29317 (-127.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:44:19.158 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29314, posNoise = 3, negNoise = 4
17-03-17 17:44:19.158 -07 000000610 INF: Z Motor: After move to -0.128638, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:19.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:44:19.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:19.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:19.158 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:19.158 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:44:19.158 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:19.158 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:19.158 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:44:19.158 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:44:19.158 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:44:19.158 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:44:19.158 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:44:19.158 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:44:19.168 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:44:19.168 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:44:19.168 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-17 17:44:19.168 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:44:19.168 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:44:19.168 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:44:19.178 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:44:19.178 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:44:19.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28278 150\n [Camera]
17-03-17 17:44:19.378 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:44:19.768 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:44:19.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:44:19.768 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:19.768 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:44:19.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:44:19.768 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:19.888 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:19.888 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2286110824, 0x0, 391868352) start.
17-03-17 17:44:19.888 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:19.888 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 17:44:19.958 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28278 775
17-03-17 17:44:20.108 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:44:20.258 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2286110824, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:44:20.258 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 17:44:20.258 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:20.258 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:44:20.258 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:44:20.258 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:20.268 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:44:20.268 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 497 ms.
17-03-17 17:44:20.268 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:44:20.268 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 502 ms.
17-03-17 17:44:20.298 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:44:20.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:44:20.298 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:20.298 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:20.298 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:44:20.298 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:44:20.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:44:20.298 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:20.298 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:20.298 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start.
17-03-17 17:44:20.488 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:44:20.488 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:44:20.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28278 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:44:20.488 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:44:20.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.128642706734716. ------
17-03-17 17:44:20.498 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13537 mm
17-03-17 17:44:20.498 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:44:20.498 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:20.498 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:20.498 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 17:44:20.498 -07 000000618 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 17:44:20.498 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29571, sync = True, waitForSettling = False)
17-03-17 17:44:20.498 -07 000000475 INF: Z Motor: Moving to -0.135367 mm, started at -0.128643 mm, distance = -6.72 um
17-03-17 17:44:20.508 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:44:20.508 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:20.508 -07 000000569 INF: FPGA: Recv YRDPOS 144771
17-03-17 17:44:20.518 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:44:20.518 -07 000000618 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:20.518 -07 000000618 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:44:20.518 -07 000000618 INF: Y Motor: Moving 1350 steps-29
17-03-17 17:44:20.518 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:44:20.528 -07 000000475 INF: FPGA: Xmit ZDACW 29571\n [Z Motor]
17-03-17 17:44:20.528 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:44:20.538 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:44:20.538 -07 000000475 INF: FPGA: 'ZDACW 29571' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 17:44:20.548 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:20.548 -07 000000438 INF: FPGA: Recv ZDACR 29571
17-03-17 17:44:20.558 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:44:20.558 -07 000000475 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 17:44:20.678 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:44:20.678 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 17:44:20.678 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:20.678 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:44:20.678 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:44:20.678 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:20.688 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:44:20.688 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:44:20.688 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:44:20.688 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:44:20.718 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:44:20.718 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 17:44:20.908 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 17:44:20.908 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:44:20.948 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:20.948 -07 000000475 INF: FPGA: Recv YRDPOS 146472
17-03-17 17:44:20.958 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:20.958 -07 000000618 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:20.958 -07 000000618 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:44:20.958 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 17:44:21.108 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.986717,
17-03-17 17:44:21.528 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:44:21.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:44:21.908 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:21.908 -07 000000576 INF: FPGA: Recv YRDPOS 146472
17-03-17 17:44:21.918 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:21.918 -07 000000618 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:21.938 -07 000000618 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:44:21.938 -07 000000618 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:44:21.938 -07 000000618 INF: Y Motor: Moved to 71.5195 after 1434 ms (table move)
17-03-17 17:44:21.938 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135367 mm (DAC = 29571)
17-03-17 17:44:21.938 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:21.938 -07 000000551 INF: FPGA: Recv ZSGSRD 30368
17-03-17 17:44:21.948 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:44:21.948 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:21.948 -07 000000608 INF: FPGA: Recv ZSGSRD 30363
17-03-17 17:44:21.958 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:21.958 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:21.958 -07 000000608 INF: FPGA: Recv ZSGSRD 30354
17-03-17 17:44:21.968 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:21.968 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:21.968 -07 000000608 INF: FPGA: Recv ZSGSRD 30363
17-03-17 17:44:21.978 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:21.978 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:21.978 -07 000000608 INF: FPGA: Recv ZSGSRD 30364
17-03-17 17:44:21.988 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:21.988 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:21.988 -07 000000608 INF: FPGA: Recv ZSGSRD 30367
17-03-17 17:44:21.998 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:21.998 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:21.998 -07 000000501 INF: FPGA: Recv ZSGSRD 30369
17-03-17 17:44:22.008 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:22.008 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:22.008 -07 000000501 INF: FPGA: Recv ZSGSRD 30359
17-03-17 17:44:22.018 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:22.018 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:22.018 -07 000000618 INF: FPGA: Recv ZSGSRD 30359
17-03-17 17:44:22.028 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:22.028 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:22.028 -07 000000608 INF: FPGA: Recv ZSGSRD 30361
17-03-17 17:44:22.038 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:22.038 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:22.038 -07 000000608 INF: FPGA: Recv ZPIEZORD 26182
17-03-17 17:44:22.048 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:22.048 -07 000000459 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.512 V. Piezo Error = -9.2 V.
17-03-17 17:44:22.048 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30363 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30363 (-134.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30354 (-134.5 uncal um), Max = 30369 (-134.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:44:22.048 -07 000000459 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30363, posNoise = 6, negNoise = 9
17-03-17 17:44:22.048 -07 000000459 INF: Z Motor: After move to -0.135367, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:22.048 -07 000000459 INF: Z Motor: Settle wait time = 1435 ms, measure time = 108 ms (allowed 150 ms), total time = 1543 ms
17-03-17 17:44:22.048 -07 000000459 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:44:22.098 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 17:44:22.098 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:44:22.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:22.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:22.098 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:22.098 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:44:22.098 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:22.098 -07 000000608 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:22.098 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:44:22.098 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:44:22.108 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:44:22.108 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:44:22.118 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:44:22.118 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:44:22.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:44:22.168 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:44:22.368 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:44:22.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:44:22.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:44:22.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 17:44:22.408 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:44:22.408 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 17:44:22.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 17:44:22.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 17:44:22.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:22.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:44:22.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 17:44:22.508 -07 000000382 INF: Autofocus start
17-03-17 17:44:22.508 -07 000000382 INF: MeasureProfile start
17-03-17 17:44:22.508 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:22.518 -07 000000382 INF: MeasureProfile done
17-03-17 17:44:22.518 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:44:22.518 -07 000000382 INF: Autofocus finished
17-03-17 17:44:22.518 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:22.518 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 8 ms to get response, and 15 ms overall
17-03-17 17:44:22.518 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:44:22.728 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:44:22.728 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 204 ms to get response, and 205 ms overall
17-03-17 17:44:22.728 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.135381705271423. ----------
17-03-17 17:44:22.728 -07 000000610 INF: Cycle	4	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:44:22.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28078, sync = True, waitForSettling = True)
17-03-17 17:44:22.738 -07 000000610 INF: Z Motor: Moving to -0.128533 mm, started at -0.135382 mm, distance = 6.85 um
17-03-17 17:44:22.738 -07 000000610 INF: FPGA: Xmit ZDACW 28078\n [Z Motor]
17-03-17 17:44:22.738 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 17:44:22.748 -07 000000610 INF: FPGA: 'ZDACW 28078' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:44:22.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:22.748 -07 000000480 INF: FPGA: Recv ZDACR 28078
17-03-17 17:44:22.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:22.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:44:22.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:22.908 -07 000000480 INF: FPGA: Recv ZSGSRD 29300
17-03-17 17:44:22.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:44:22.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:22.918 -07 000000382 INF: FPGA: Recv ZSGSRD 29302
17-03-17 17:44:22.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:22.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:22.928 -07 000000480 INF: FPGA: Recv ZSGSRD 29300
17-03-17 17:44:22.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:22.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:22.938 -07 000000382 INF: FPGA: Recv ZSGSRD 29297
17-03-17 17:44:22.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:22.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:22.948 -07 000000382 INF: FPGA: Recv ZSGSRD 29300
17-03-17 17:44:22.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:22.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:22.958 -07 000000382 INF: FPGA: Recv ZSGSRD 29300
17-03-17 17:44:22.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:22.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:22.968 -07 000000382 INF: FPGA: Recv ZSGSRD 29296
17-03-17 17:44:22.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:22.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:22.978 -07 000000480 INF: FPGA: Recv ZSGSRD 29294
17-03-17 17:44:22.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:22.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:22.988 -07 000000480 INF: FPGA: Recv ZSGSRD 29299
17-03-17 17:44:22.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:22.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:22.998 -07 000000480 INF: FPGA: Recv ZSGSRD 29302
17-03-17 17:44:23.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:23.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:23.008 -07 000000623 INF: FPGA: Recv ZPIEZORD 24815
17-03-17 17:44:23.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:23.018 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.284 V. Piezo Error = -9.8 V.
17-03-17 17:44:23.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29299 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29300 (-127.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29294 (-127.7 uncal um), Max = 29302 (-127.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:44:23.018 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29299, posNoise = 3, negNoise = 5
17-03-17 17:44:23.018 -07 000000610 INF: Z Motor: After move to -0.128533, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:23.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:44:23.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:23.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:23.018 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:23.018 -07 000000569 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:23.018 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:44:23.018 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:23.018 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:44:23.018 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:44:23.018 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:44:23.018 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:44:23.018 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:44:23.018 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:44:23.028 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:44:23.028 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:44:23.028 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:44:23.028 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:44:23.028 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:44:23.028 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:44:23.038 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:44:23.038 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:44:23.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28255 150\n [Camera]
17-03-17 17:44:23.238 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:44:23.628 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:44:23.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:44:23.628 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:23.628 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:23.628 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2321533088, 0x0, 391868352) start.
17-03-17 17:44:23.628 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:44:23.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:44:23.628 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:23.628 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:23.628 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2356955352, 0x0, 418435064) start.
17-03-17 17:44:23.818 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28255 775
17-03-17 17:44:23.968 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:44:24.008 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2356955352, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 17:44:24.008 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:44:24.008 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:24.008 -07 000000569 INF: Camera: sBCa_ReadImage(785074288, 2321533088, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:44:24.008 -07 000000569 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:44:24.008 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:24.008 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:44:24.008 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:44:24.008 -07 000000569 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:44:24.018 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:44:24.158 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:44:24.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:44:24.158 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:24.158 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:24.158 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:44:24.158 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:44:24.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:44:24.158 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:24.158 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:24.158 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 17:44:24.358 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:44:24.358 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:44:24.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28255 150' command took 2 ms to send, 1311 ms to get response, and 1316 ms overall
17-03-17 17:44:24.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:44:24.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.128546343552589. ------
17-03-17 17:44:24.358 -07 000000569 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:24.358 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13451 mm
17-03-17 17:44:24.358 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:44:24.368 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:24.368 -07 000000569 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:44:24.368 -07 000000569 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:44:24.368 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 17:44:24.368 -07 000000480 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 17:44:24.368 -07 000000608 INF: Z Motor: Entering MoveAbsStepped (DAC = 29384, sync = True, waitForSettling = False)
17-03-17 17:44:24.368 -07 000000608 INF: Z Motor: Moving to -0.134511 mm, started at -0.128546 mm, distance = -5.96 um
17-03-17 17:44:24.378 -07 000000608 INF: FPGA: Xmit ZDACW 29384\n [Z Motor]
17-03-17 17:44:24.378 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 17:44:24.388 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:24.388 -07 000000608 INF: FPGA: 'ZDACW 29384' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:44:24.388 -07 000000627 INF: FPGA: Recv YRDPOS 146472
17-03-17 17:44:24.398 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 17:44:24.398 -07 000000608 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:24.398 -07 000000480 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:24.398 -07 000000480 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:44:24.398 -07 000000480 INF: Y Motor: Moving 1349 steps-27
17-03-17 17:44:24.398 -07 000000438 INF: FPGA: Recv ZDACR 29384
17-03-17 17:44:24.408 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:44:24.408 -07 000000608 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:44:24.408 -07 000000608 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 17:44:24.538 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:44:24.538 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:44:24.538 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:24.538 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:44:24.548 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:44:24.548 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:24.548 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:44:24.548 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:44:24.548 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:44:24.558 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:44:24.568 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:44:24.568 -07 000000569 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 17:44:24.778 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 17:44:24.778 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 17:44:24.808 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:24.818 -07 000000433 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:44:24.828 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:44:24.828 -07 000000480 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:24.828 -07 000000480 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 17:44:24.828 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.843 mm, average velocity = 2.173 mm/sec
17-03-17 17:44:25.778 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:25.778 -07 000000569 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:44:25.788 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:44:25.788 -07 000000480 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:25.798 -07 000000480 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:44:25.798 -07 000000480 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:44:25.808 -07 000000480 INF: Y Motor: Moved to 72.3501 after 1436 ms (table move)
17-03-17 17:44:25.808 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134511 mm (DAC = 29384)
17-03-17 17:44:25.808 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:25.808 -07 000000608 INF: FPGA: Recv ZSGSRD 30230
17-03-17 17:44:25.818 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:44:25.818 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:25.818 -07 000000627 INF: FPGA: Recv ZSGSRD 30226
17-03-17 17:44:25.828 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:25.828 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:25.828 -07 000000382 INF: FPGA: Recv ZSGSRD 30231
17-03-17 17:44:25.838 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:25.838 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:25.838 -07 000000627 INF: FPGA: Recv ZSGSRD 30228
17-03-17 17:44:25.848 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:44:25.848 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:25.848 -07 000000382 INF: FPGA: Recv ZSGSRD 30222
17-03-17 17:44:25.858 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:25.858 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:25.858 -07 000000480 INF: FPGA: Recv ZSGSRD 30228
17-03-17 17:44:25.868 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:25.868 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:25.868 -07 000000382 INF: FPGA: Recv ZSGSRD 30235
17-03-17 17:44:25.878 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:25.878 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:25.878 -07 000000480 INF: FPGA: Recv ZSGSRD 30226
17-03-17 17:44:25.888 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:25.888 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:25.888 -07 000000382 INF: FPGA: Recv ZSGSRD 30224
17-03-17 17:44:25.898 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:25.898 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:25.898 -07 000000433 INF: FPGA: Recv ZSGSRD 30232
17-03-17 17:44:25.908 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:25.908 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:25.908 -07 000000433 INF: FPGA: Recv ZPIEZORD 26058
17-03-17 17:44:25.918 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:25.918 -07 000000623 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.484 V. Piezo Error = -9.2 V.
17-03-17 17:44:25.918 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30228 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30228 (-133.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30222 (-133.7 uncal um), Max = 30235 (-133.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:44:25.918 -07 000000623 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30228, posNoise = 7, negNoise = 6
17-03-17 17:44:25.918 -07 000000623 INF: Z Motor: After move to -0.134511, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:25.918 -07 000000623 INF: Z Motor: Settle wait time = 1440 ms, measure time = 106 ms (allowed 150 ms), total time = 1546 ms
17-03-17 17:44:25.918 -07 000000623 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:44:25.968 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 17:44:25.968 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:44:25.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:25.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:25.968 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:25.968 -07 000000569 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:25.968 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:44:25.968 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:25.968 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:44:25.968 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:44:25.978 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:44:25.978 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:44:25.988 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:44:25.988 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 17:44:25.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:44:26.038 -07 000000608 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:44:26.238 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:44:26.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:44:26.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:44:26.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-17 17:44:26.278 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:44:26.278 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 17:44:26.278 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 17:44:26.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 17:44:26.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:26.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:44:26.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 17:44:26.378 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:26.378 -07 000000623 INF: Autofocus start
17-03-17 17:44:26.378 -07 000000623 INF: MeasureProfile start
17-03-17 17:44:26.388 -07 000000623 INF: MeasureProfile done
17-03-17 17:44:26.388 -07 000000623 INF: X=128  Z correction [um]=0.5917814
17-03-17 17:44:26.388 -07 000000623 INF: Autofocus finished
17-03-17 17:44:26.398 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:26.398 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 10 ms to get response, and 14 ms overall
17-03-17 17:44:26.398 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:44:26.468 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 4.000345,
17-03-17 17:44:26.528 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:44:26.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:44:26.598 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:44:26.598 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:44:26.598 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.134514436632285. ----------
17-03-17 17:44:26.598 -07 000000610 INF: Cycle	4	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:44:26.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28026, sync = True, waitForSettling = True)
17-03-17 17:44:26.608 -07 000000610 INF: Z Motor: Moving to -0.128295 mm, started at -0.134514 mm, distance = 6.22 um
17-03-17 17:44:26.608 -07 000000610 INF: FPGA: Xmit ZDACW 28026\n [Z Motor]
17-03-17 17:44:26.608 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 17:44:26.618 -07 000000610 INF: FPGA: 'ZDACW 28026' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:44:26.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:26.618 -07 000000623 INF: FPGA: Recv ZDACR 28026
17-03-17 17:44:26.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:26.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:44:26.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:26.778 -07 000000433 INF: FPGA: Recv ZSGSRD 29262
17-03-17 17:44:26.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:26.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:26.788 -07 000000623 INF: FPGA: Recv ZSGSRD 29265
17-03-17 17:44:26.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:26.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:26.798 -07 000000623 INF: FPGA: Recv ZSGSRD 29260
17-03-17 17:44:26.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:26.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:26.808 -07 000000433 INF: FPGA: Recv ZSGSRD 29265
17-03-17 17:44:26.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:26.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:26.818 -07 000000551 INF: FPGA: Recv ZSGSRD 29260
17-03-17 17:44:26.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:26.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:26.828 -07 000000475 INF: FPGA: Recv ZSGSRD 29263
17-03-17 17:44:26.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:26.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:26.838 -07 000000433 INF: FPGA: Recv ZSGSRD 29263
17-03-17 17:44:26.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:26.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:26.848 -07 000000623 INF: FPGA: Recv ZSGSRD 29258
17-03-17 17:44:26.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:26.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:26.858 -07 000000551 INF: FPGA: Recv ZSGSRD 29262
17-03-17 17:44:26.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:26.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:26.868 -07 000000433 INF: FPGA: Recv ZSGSRD 29257
17-03-17 17:44:26.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:26.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:26.878 -07 000000623 INF: FPGA: Recv ZPIEZORD 24775
17-03-17 17:44:26.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:26.888 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -9.8 V.
17-03-17 17:44:26.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29262 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29262 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29257 (-127.5 uncal um), Max = 29265 (-127.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:44:26.888 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29262, posNoise = 3, negNoise = 5
17-03-17 17:44:26.888 -07 000000610 INF: Z Motor: After move to -0.128295, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:26.888 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:44:26.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:26.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:26.888 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:44:26.888 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:26.888 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:26.888 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:26.888 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:44:26.888 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:44:26.888 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:44:26.888 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:44:26.888 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:44:26.888 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:44:26.898 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:44:26.898 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:44:26.898 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:44:26.898 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:44:26.908 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:44:26.908 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:44:26.908 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:44:26.908 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:44:26.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28202 150\n [Camera]
17-03-17 17:44:27.108 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:44:27.498 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:44:27.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:44:27.498 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:44:27.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:44:27.498 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:27.498 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:27.498 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 17:44:27.498 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:27.498 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:27.498 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 17:44:27.688 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28202 775
17-03-17 17:44:27.838 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:44:27.878 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:44:27.878 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 17:44:27.878 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:27.878 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:44:27.878 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:44:27.878 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:44:27.878 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:27.878 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:44:27.878 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:44:27.888 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 17:44:28.028 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:44:28.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:44:28.028 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:28.028 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:28.028 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 17:44:28.028 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:44:28.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:44:28.028 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:28.028 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:28.028 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 17:44:28.218 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:44:28.218 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:44:28.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28202 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:44:28.218 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:44:28.218 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128308647703344. ------
17-03-17 17:44:28.348 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13496 mm
17-03-17 17:44:28.348 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:44:28.348 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:28.348 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 17:44:28.348 -07 000000475 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 17:44:28.348 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29482, sync = True, waitForSettling = False)
17-03-17 17:44:28.348 -07 000000576 INF: Z Motor: Moving to -0.134960 mm, started at -0.128309 mm, distance = -6.65 um
17-03-17 17:44:28.348 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:28.358 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:44:28.358 -07 000000576 INF: FPGA: Xmit ZDACW 29482\n [Z Motor]
17-03-17 17:44:28.358 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:44:28.368 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:28.368 -07 000000576 INF: FPGA: 'ZDACW 29482' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:44:28.368 -07 000000433 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:44:28.378 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:44:28.378 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:44:28.378 -07 000000475 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:28.378 -07 000000475 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:44:28.378 -07 000000475 INF: Y Motor: Moving 1348 steps-26
17-03-17 17:44:28.388 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:28.388 -07 000000459 INF: FPGA: Recv ZDACR 29482
17-03-17 17:44:28.398 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:44:28.398 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:44:28.398 -07 000000576 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 17:44:28.418 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 17:44:28.418 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:44:28.418 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:28.418 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 17:44:28.418 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:44:28.418 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:28.418 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:44:28.428 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:44:28.428 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 17:44:28.428 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 17:44:28.578 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:44:28.578 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:44:28.768 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 17:44:28.768 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:44:28.808 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:29.758 -07 000000561 INF: FPGA: Recv YRDPOS 149865
17-03-17 17:44:29.758 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 940 ms to get response, and 949 ms overall
17-03-17 17:44:29.758 -07 000000475 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:29.758 -07 000000475 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 17:44:29.758 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.117 mm/sec
17-03-17 17:44:30.708 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:30.708 -07 000000561 INF: FPGA: Recv YRDPOS 149866
17-03-17 17:44:30.718 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:44:30.718 -07 000000475 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:30.728 -07 000000475 INF: Y Motor: After move to 73.192604, error = -0.015846, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:44:30.728 -07 000000475 INF: Y Motor: Position error after settling (table move) = -32 encoder counts (-0.016 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:44:30.738 -07 000000475 INF: Y Motor: Moved to 73.1768 after 2383 ms (table move)
17-03-17 17:44:30.738 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134960 mm (DAC = 29482)
17-03-17 17:44:30.738 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:30.738 -07 000000551 INF: FPGA: Recv ZSGSRD 30299
17-03-17 17:44:30.748 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:44:30.748 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:30.748 -07 000000618 INF: FPGA: Recv ZSGSRD 30301
17-03-17 17:44:30.758 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:30.758 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:30.758 -07 000000486 INF: FPGA: Recv ZSGSRD 30299
17-03-17 17:44:30.768 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:30.768 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:30.768 -07 000000475 INF: FPGA: Recv ZSGSRD 30300
17-03-17 17:44:30.778 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:30.778 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:30.778 -07 000000459 INF: FPGA: Recv ZSGSRD 30298
17-03-17 17:44:30.788 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:30.788 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:30.788 -07 000000475 INF: FPGA: Recv ZSGSRD 30298
17-03-17 17:44:30.798 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:30.798 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:30.798 -07 000000459 INF: FPGA: Recv ZSGSRD 30301
17-03-17 17:44:30.808 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:30.808 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:30.808 -07 000000627 INF: FPGA: Recv ZSGSRD 30295
17-03-17 17:44:30.818 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:30.818 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:30.818 -07 000000459 INF: FPGA: Recv ZSGSRD 30297
17-03-17 17:44:30.828 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:30.828 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:30.828 -07 000000618 INF: FPGA: Recv ZSGSRD 30295
17-03-17 17:44:30.838 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:30.838 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:30.838 -07 000000486 INF: FPGA: Recv ZPIEZORD 26162
17-03-17 17:44:30.848 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:30.848 -07 000000623 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.499 V. Piezo Error = -9.1 V.
17-03-17 17:44:30.848 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30298 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30298 (-134.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30295 (-134.2 uncal um), Max = 30301 (-134.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:44:30.848 -07 000000623 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30298, posNoise = 3, negNoise = 3
17-03-17 17:44:30.848 -07 000000623 INF: Z Motor: After move to -0.134960, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:30.848 -07 000000623 INF: Z Motor: Settle wait time = 2386 ms, measure time = 108 ms (allowed 150 ms), total time = 2494 ms
17-03-17 17:44:30.848 -07 000000623 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:44:30.898 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2546 ms
17-03-17 17:44:30.898 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:44:30.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:30.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:30.898 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:30.898 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:30.898 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:44:30.898 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:30.898 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:44:30.898 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:44:30.908 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:44:30.908 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:44:30.908 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:44:30.908 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 17:44:30.918 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:44:30.958 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:44:31.158 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:44:31.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:44:31.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:44:31.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:44:31.198 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:44:31.198 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 17:44:31.198 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 17:44:31.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:44:31.278 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:31.278 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:44:31.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:44:31.298 -07 000000623 INF: Autofocus start
17-03-17 17:44:31.298 -07 000000623 INF: MeasureProfile start
17-03-17 17:44:31.298 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:31.298 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:31.308 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:44:31.308 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:44:31.308 -07 000000623 INF: MeasureProfile done
17-03-17 17:44:31.308 -07 000000623 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 17:44:31.308 -07 000000623 INF: Autofocus finished
17-03-17 17:44:31.508 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:44:31.508 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 207 ms overall
17-03-17 17:44:31.518 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1767578125, Z-position -0.134964131482208. ----------
17-03-17 17:44:31.518 -07 000000610 INF: Cycle	4	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:44:31.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27977, sync = True, waitForSettling = True)
17-03-17 17:44:31.518 -07 000000610 INF: Z Motor: Moving to -0.128070 mm, started at -0.134964 mm, distance = 6.89 um
17-03-17 17:44:31.518 -07 000000610 INF: FPGA: Xmit ZDACW 27977\n [Z Motor]
17-03-17 17:44:31.528 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:44:31.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:44:31.528 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:44:31.528 -07 000000610 INF: FPGA: 'ZDACW 27977' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 17:44:31.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:31.528 -07 000000627 INF: FPGA: Recv ZDACR 27977
17-03-17 17:44:31.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:44:31.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:44:31.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:31.688 -07 000000623 INF: FPGA: Recv ZSGSRD 29226
17-03-17 17:44:31.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:44:31.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:31.698 -07 000000459 INF: FPGA: Recv ZSGSRD 29227
17-03-17 17:44:31.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:31.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:31.708 -07 000000475 INF: FPGA: Recv ZSGSRD 29222
17-03-17 17:44:31.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:31.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:31.718 -07 000000618 INF: FPGA: Recv ZSGSRD 29225
17-03-17 17:44:31.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:31.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:31.728 -07 000000475 INF: FPGA: Recv ZSGSRD 29231
17-03-17 17:44:31.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:31.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:31.738 -07 000000433 INF: FPGA: Recv ZSGSRD 29227
17-03-17 17:44:31.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:31.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:31.748 -07 000000486 INF: FPGA: Recv ZSGSRD 29225
17-03-17 17:44:31.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:31.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:31.758 -07 000000618 INF: FPGA: Recv ZSGSRD 29226
17-03-17 17:44:31.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:31.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:31.768 -07 000000623 INF: FPGA: Recv ZSGSRD 29229
17-03-17 17:44:31.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:31.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:31.778 -07 000000627 INF: FPGA: Recv ZSGSRD 29225
17-03-17 17:44:31.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:31.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:31.788 -07 000000433 INF: FPGA: Recv ZPIEZORD 24747
17-03-17 17:44:31.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:31.798 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.269 V. Piezo Error = -9.8 V.
17-03-17 17:44:31.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29226 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29226 (-127.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29222 (-127.3 uncal um), Max = 29231 (-127.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:44:31.798 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29226, posNoise = 5, negNoise = 4
17-03-17 17:44:31.798 -07 000000610 INF: Z Motor: After move to -0.128070, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:31.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 17:44:31.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:31.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:31.798 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:31.798 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:44:31.798 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:31.798 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:31.798 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:44:31.798 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:44:31.798 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:44:31.798 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:44:31.798 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:44:31.798 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:44:31.808 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:44:31.808 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:44:31.808 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:44:31.808 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:44:31.818 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:44:31.818 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:44:31.818 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:44:31.818 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:44:31.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28154 150\n [Camera]
17-03-17 17:44:31.828 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 4.02213,
17-03-17 17:44:32.018 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:44:32.408 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:44:32.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:44:32.418 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:32.418 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:44:32.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:44:32.418 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:32.418 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:32.418 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:44:32.418 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:32.418 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 17:44:32.608 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28154 775
17-03-17 17:44:32.758 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 17:44:32.808 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 17:44:32.808 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 17:44:32.808 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:32.818 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:44:32.818 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 17:44:32.818 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 17:44:32.818 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 17:44:32.818 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:32.818 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:44:32.828 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 17:44:32.948 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:44:32.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:44:32.948 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:32.948 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:44:32.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:44:32.948 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:33.068 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:33.068 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 17:44:33.068 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:33.068 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 17:44:33.138 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:44:33.138 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:44:33.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28154 150' command took 2 ms to send, 1303 ms to get response, and 1318 ms overall
17-03-17 17:44:33.138 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:44:33.138 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1767578125, Z-Position -0.128077376066241. ------
17-03-17 17:44:33.138 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:33.138 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13433 mm
17-03-17 17:44:33.138 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:44:33.148 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 17:44:33.148 -07 000000459 INF: Y Motor: Moving to 74.0226 mm, started at 73.1768 mm, delta = 0.8458 mm
17-03-17 17:44:33.148 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29345, sync = True, waitForSettling = False)
17-03-17 17:44:33.148 -07 000000623 INF: Z Motor: Moving to -0.134333 mm, started at -0.128077 mm, distance = -6.26 um
17-03-17 17:44:33.148 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:33.148 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 17:44:33.148 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:33.148 -07 000000382 INF: FPGA: Recv YRDPOS 149866
17-03-17 17:44:33.158 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:44:33.158 -07 000000459 INF: Y Motor: Encoder = 149866 = motor step 117082.8 = 73.1768 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:33.158 -07 000000459 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:44:33.158 -07 000000459 INF: Y Motor: Moving 1353 steps-33
17-03-17 17:44:33.158 -07 000000623 INF: FPGA: Xmit ZDACW 29345\n [Z Motor]
17-03-17 17:44:33.158 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:44:33.168 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:44:33.168 -07 000000623 INF: FPGA: 'ZDACW 29345' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 17:44:33.178 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:44:33.188 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:33.188 -07 000000501 INF: FPGA: Recv ZDACR 29345
17-03-17 17:44:33.198 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:44:33.198 -07 000000623 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 17:44:33.368 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:44:33.368 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 17:44:33.468 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 17:44:33.468 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 17:44:33.468 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:33.468 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 17:44:33.468 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 17:44:33.468 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:33.468 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:44:33.468 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:44:33.468 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-17 17:44:33.478 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-17 17:44:33.548 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 17:44:33.548 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:44:33.578 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:33.578 -07 000000486 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:44:33.588 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:44:33.588 -07 000000459 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:33.588 -07 000000459 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 17:44:33.588 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.125 mm/sec
17-03-17 17:44:34.538 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:34.538 -07 000000623 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:44:34.548 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:44:34.548 -07 000000459 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:34.558 -07 000000459 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:44:34.558 -07 000000459 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:44:34.558 -07 000000459 INF: Y Motor: Moved to 74.0088 after 1413 ms (table move)
17-03-17 17:44:34.558 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134333 mm (DAC = 29345)
17-03-17 17:44:34.558 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:34.568 -07 000000475 INF: FPGA: Recv ZSGSRD 30207
17-03-17 17:44:34.568 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:44:34.568 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:34.568 -07 000000459 INF: FPGA: Recv ZSGSRD 30207
17-03-17 17:44:34.578 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:44:34.578 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:34.578 -07 000000459 INF: FPGA: Recv ZSGSRD 30191
17-03-17 17:44:34.588 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:34.588 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:34.588 -07 000000459 INF: FPGA: Recv ZSGSRD 30197
17-03-17 17:44:34.598 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:34.598 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:34.598 -07 000000459 INF: FPGA: Recv ZSGSRD 30205
17-03-17 17:44:34.608 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:34.608 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:34.608 -07 000000459 INF: FPGA: Recv ZSGSRD 30203
17-03-17 17:44:34.618 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:34.618 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:34.618 -07 000000382 INF: FPGA: Recv ZSGSRD 30200
17-03-17 17:44:34.628 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:44:34.628 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:34.628 -07 000000382 INF: FPGA: Recv ZSGSRD 30204
17-03-17 17:44:34.638 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:34.638 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:34.638 -07 000000382 INF: FPGA: Recv ZSGSRD 30201
17-03-17 17:44:34.648 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:34.648 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:34.648 -07 000000382 INF: FPGA: Recv ZSGSRD 30195
17-03-17 17:44:34.658 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:34.658 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:34.658 -07 000000382 INF: FPGA: Recv ZPIEZORD 26034
17-03-17 17:44:34.668 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:34.668 -07 000000618 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.478 V. Piezo Error = -9.2 V.
17-03-17 17:44:34.668 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30201 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30202 (-133.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30191 (-133.5 uncal um), Max = 30207 (-133.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:44:34.668 -07 000000618 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30201, posNoise = 6, negNoise = 10
17-03-17 17:44:34.668 -07 000000618 INF: Z Motor: After move to -0.134333, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:34.668 -07 000000618 INF: Z Motor: Settle wait time = 1416 ms, measure time = 102 ms (allowed 150 ms), total time = 1518 ms
17-03-17 17:44:34.668 -07 000000618 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 17:44:34.718 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1571 ms
17-03-17 17:44:34.718 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:44:34.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:34.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:34.718 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:34.718 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:34.718 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:44:34.718 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:34.718 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:44:34.718 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:44:34.718 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:44:34.728 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:44:34.728 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:44:34.728 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:44:34.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:44:34.778 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:44:34.978 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:44:34.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:44:34.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:44:34.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 17:44:35.018 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:44:35.018 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:44:35.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 17:44:35.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:44:35.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:35.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:44:35.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:44:35.118 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:35.118 -07 000000486 INF: Autofocus start
17-03-17 17:44:35.118 -07 000000486 INF: MeasureProfile start
17-03-17 17:44:35.118 -07 000000438 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:35.128 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:44:35.128 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:44:35.128 -07 000000486 INF: MeasureProfile done
17-03-17 17:44:35.138 -07 000000486 INF: X=32  Z correction [um]=0.1299841
17-03-17 17:44:35.138 -07 000000486 INF: Autofocus finished
17-03-17 17:44:35.328 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:44:35.328 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:44:35.328 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.134340982904458. ----------
17-03-17 17:44:35.338 -07 000000610 INF: Cycle	4	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:44:35.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27886, sync = True, waitForSettling = True)
17-03-17 17:44:35.338 -07 000000610 INF: Z Motor: Moving to -0.127654 mm, started at -0.134341 mm, distance = 6.69 um
17-03-17 17:44:35.338 -07 000000610 INF: FPGA: Xmit ZDACW 27886\n [Z Motor]
17-03-17 17:44:35.338 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 17:44:35.348 -07 000000610 INF: FPGA: 'ZDACW 27886' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:44:35.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:35.348 -07 000000382 INF: FPGA: Recv ZDACR 27886
17-03-17 17:44:35.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:35.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:44:35.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:35.508 -07 000000608 INF: FPGA: Recv ZSGSRD 29160
17-03-17 17:44:35.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:44:35.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:35.518 -07 000000382 INF: FPGA: Recv ZSGSRD 29166
17-03-17 17:44:35.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:35.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:35.528 -07 000000433 INF: FPGA: Recv ZSGSRD 29161
17-03-17 17:44:35.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:35.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:35.538 -07 000000382 INF: FPGA: Recv ZSGSRD 29162
17-03-17 17:44:35.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:35.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:35.548 -07 000000433 INF: FPGA: Recv ZSGSRD 29165
17-03-17 17:44:35.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:35.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:35.558 -07 000000382 INF: FPGA: Recv ZSGSRD 29160
17-03-17 17:44:35.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:35.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:35.568 -07 000000551 INF: FPGA: Recv ZSGSRD 29165
17-03-17 17:44:35.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:35.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:35.578 -07 000000382 INF: FPGA: Recv ZSGSRD 29164
17-03-17 17:44:35.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:35.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:35.588 -07 000000551 INF: FPGA: Recv ZSGSRD 29164
17-03-17 17:44:35.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:35.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:35.598 -07 000000382 INF: FPGA: Recv ZSGSRD 29162
17-03-17 17:44:35.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:35.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:35.608 -07 000000551 INF: FPGA: Recv ZPIEZORD 24678
17-03-17 17:44:35.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:35.618 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.255 V. Piezo Error = -9.8 V.
17-03-17 17:44:35.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29163 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29163 (-126.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29160 (-126.9 uncal um), Max = 29166 (-126.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:44:35.618 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29163, posNoise = 3, negNoise = 3
17-03-17 17:44:35.618 -07 000000610 INF: Z Motor: After move to -0.127654, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:35.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 17:44:35.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:35.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:35.618 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:35.618 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:44:35.618 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:44:35.618 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:35.618 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:44:35.618 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:35.618 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:44:35.618 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:44:35.618 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:44:35.618 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:44:35.618 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:44:35.618 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:44:35.628 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:44:35.628 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:44:35.628 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:44:35.628 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 17:44:35.638 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:44:35.638 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:44:35.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28063 150\n [Camera]
17-03-17 17:44:35.838 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:44:36.228 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:44:36.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:44:36.228 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:36.228 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:44:36.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:44:36.228 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:36.228 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:36.228 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:44:36.228 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:36.228 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 17:44:36.418 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28063 775
17-03-17 17:44:36.528 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:44:36.528 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 3. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=37, R2=44, Total=81. Warn if over 250 bubbles per interval.
17-03-17 17:44:36.568 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:44:36.618 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 17:44:36.618 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:44:36.618 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:36.618 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:44:36.618 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 17:44:36.618 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 17:44:36.618 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:44:36.618 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:36.628 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:44:36.638 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 17:44:36.758 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 17:44:36.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 17:44:36.758 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:36.758 -07 000000608 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 17:44:36.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 17:44:36.758 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:36.768 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:36.768 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) start.
17-03-17 17:44:36.768 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:36.768 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:44:36.948 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:44:36.948 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:44:36.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28063 150' command took 2 ms to send, 1305 ms to get response, and 1313 ms overall
17-03-17 17:44:36.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:44:36.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.12767265070131. ------
17-03-17 17:44:36.958 -07 000000608 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:36.958 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13392 mm
17-03-17 17:44:36.958 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:44:36.958 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 17:44:36.958 -07 000000627 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 17:44:36.958 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29254, sync = True, waitForSettling = False)
17-03-17 17:44:36.958 -07 000000576 INF: Z Motor: Moving to -0.133916 mm, started at -0.127673 mm, distance = -6.24 um
17-03-17 17:44:36.958 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:36.968 -07 000000608 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:36.968 -07 000000576 INF: FPGA: Xmit ZDACW 29254\n [Z Motor]
17-03-17 17:44:36.968 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 17:44:36.978 -07 000000576 INF: FPGA: 'ZDACW 29254' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:44:36.978 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:36.978 -07 000000480 INF: FPGA: Recv YRDPOS 151571
17-03-17 17:44:36.988 -07 000000608 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:44:36.988 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 17:44:36.988 -07 000000627 INF: Y Motor: Encoder = 151571 = motor step 118414.8 = 74.0093 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:36.988 -07 000000627 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:44:36.988 -07 000000627 INF: Y Motor: Moving 1349 steps-28
17-03-17 17:44:36.998 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:36.998 -07 000000480 INF: FPGA: Recv ZDACR 29254
17-03-17 17:44:37.008 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:44:37.008 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:44:37.008 -07 000000576 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 17:44:37.158 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 17:44:37.158 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:44:37.158 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:37.158 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:44:37.158 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1458343128, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 17:44:37.158 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 17:44:37.158 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:37.168 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 17:44:37.168 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:44:37.168 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:44:37.188 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:44:37.188 -07 000000608 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 17:44:37.198 -07 000000569 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.988112,
17-03-17 17:44:37.388 -07 000000569 INF: FPGA: Recv YMVTILE
17-03-17 17:44:37.388 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 397 ms overall
17-03-17 17:44:37.408 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:37.408 -07 000000608 INF: FPGA: Recv YRDPOS 153257
17-03-17 17:44:37.418 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:44:37.418 -07 000000627 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:37.418 -07 000000627 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 17:44:37.418 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 17:44:38.368 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:44:38.368 -07 000000569 INF: FPGA: Recv YRDPOS 153258
17-03-17 17:44:38.378 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:44:38.378 -07 000000627 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:44:38.388 -07 000000627 INF: Y Motor: After move to 74.852608, error = -0.019600, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:44:38.388 -07 000000627 INF: Y Motor: Position error after settling (table move) = -40 encoder counts (-0.020 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:44:38.388 -07 000000627 INF: Y Motor: Moved to 74.8330 after 1431 ms (table move)
17-03-17 17:44:38.388 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133916 mm (DAC = 29254)
17-03-17 17:44:38.388 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:38.398 -07 000000627 INF: FPGA: Recv ZSGSRD 30138
17-03-17 17:44:38.398 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:44:38.398 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:38.398 -07 000000627 INF: FPGA: Recv ZSGSRD 30142
17-03-17 17:44:38.408 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:44:38.408 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:38.408 -07 000000627 INF: FPGA: Recv ZSGSRD 30138
17-03-17 17:44:38.418 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:38.418 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:38.418 -07 000000627 INF: FPGA: Recv ZSGSRD 30131
17-03-17 17:44:38.428 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:38.428 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:38.428 -07 000000627 INF: FPGA: Recv ZSGSRD 30132
17-03-17 17:44:38.438 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:38.438 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:38.438 -07 000000627 INF: FPGA: Recv ZSGSRD 30135
17-03-17 17:44:38.448 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:38.448 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:38.448 -07 000000627 INF: FPGA: Recv ZSGSRD 30135
17-03-17 17:44:38.458 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:38.458 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:38.458 -07 000000618 INF: FPGA: Recv ZSGSRD 30139
17-03-17 17:44:38.468 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:44:38.468 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:38.468 -07 000000618 INF: FPGA: Recv ZSGSRD 30138
17-03-17 17:44:38.478 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:38.478 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:38.478 -07 000000618 INF: FPGA: Recv ZSGSRD 30138
17-03-17 17:44:38.488 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:38.488 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:38.488 -07 000000618 INF: FPGA: Recv ZPIEZORD 25953
17-03-17 17:44:38.498 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:38.498 -07 000000551 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.464 V. Piezo Error = -9.2 V.
17-03-17 17:44:38.498 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30137 (-133.1 uncal um), Error = 0.8 uncal um, Median = 30138 (-133.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30131 (-133.1 uncal um), Max = 30142 (-133.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:44:38.498 -07 000000551 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30137, posNoise = 5, negNoise = 6
17-03-17 17:44:38.498 -07 000000551 INF: Z Motor: After move to -0.133916, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:38.498 -07 000000551 INF: Z Motor: Settle wait time = 1434 ms, measure time = 102 ms (allowed 150 ms), total time = 1536 ms
17-03-17 17:44:38.498 -07 000000551 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 17:44:38.548 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 17:44:38.548 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:44:38.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:38.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:38.548 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:38.548 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:38.548 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:44:38.548 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:38.548 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:44:38.548 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:44:38.558 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:44:38.558 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:44:38.568 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 17:44:38.568 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 17:44:38.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:44:38.618 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:44:38.818 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:44:38.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:44:38.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:44:38.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:44:38.858 -07 000000433 INF: FPGA: Recv @CAMSNAP 283
17-03-17 17:44:38.858 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 17:44:38.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 288 ms overall
17-03-17 17:44:38.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:44:38.948 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:38.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:44:38.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 17:44:38.958 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:44:38.958 -07 000000627 INF: Autofocus start
17-03-17 17:44:38.958 -07 000000627 INF: MeasureProfile start
17-03-17 17:44:38.958 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:44:38.968 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:44:38.968 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:44:38.968 -07 000000627 INF: MeasureProfile done
17-03-17 17:44:38.968 -07 000000627 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:44:38.968 -07 000000627 INF: Autofocus finished
17-03-17 17:44:39.168 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:44:39.168 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:44:39.168 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8330078125, Z-position -0.133929833327385. ----------
17-03-17 17:44:39.168 -07 000000610 INF: Cycle	4	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:44:39.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27778, sync = True, waitForSettling = True)
17-03-17 17:44:39.178 -07 000000610 INF: Z Motor: Moving to -0.127160 mm, started at -0.133930 mm, distance = 6.77 um
17-03-17 17:44:39.178 -07 000000610 INF: FPGA: Xmit ZDACW 27778\n [Z Motor]
17-03-17 17:44:39.178 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:44:39.188 -07 000000610 INF: FPGA: 'ZDACW 27778' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:39.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:44:39.188 -07 000000608 INF: FPGA: Recv ZDACR 27778
17-03-17 17:44:39.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:39.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:44:39.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:39.348 -07 000000576 INF: FPGA: Recv ZSGSRD 29080
17-03-17 17:44:39.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:39.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:39.358 -07 000000608 INF: FPGA: Recv ZSGSRD 29088
17-03-17 17:44:39.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:39.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:39.368 -07 000000618 INF: FPGA: Recv ZSGSRD 29088
17-03-17 17:44:39.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:39.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:39.378 -07 000000569 INF: FPGA: Recv ZSGSRD 29083
17-03-17 17:44:39.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:39.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:39.388 -07 000000551 INF: FPGA: Recv ZSGSRD 29085
17-03-17 17:44:39.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:39.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:39.398 -07 000000608 INF: FPGA: Recv ZSGSRD 29084
17-03-17 17:44:39.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:39.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:39.408 -07 000000551 INF: FPGA: Recv ZSGSRD 29093
17-03-17 17:44:39.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:39.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:39.418 -07 000000569 INF: FPGA: Recv ZSGSRD 29080
17-03-17 17:44:39.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:39.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:39.428 -07 000000618 INF: FPGA: Recv ZSGSRD 29080
17-03-17 17:44:39.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:39.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:44:39.438 -07 000000433 INF: FPGA: Recv ZSGSRD 29088
17-03-17 17:44:39.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:39.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:44:39.448 -07 000000618 INF: FPGA: Recv ZPIEZORD 24592
17-03-17 17:44:39.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:44:39.458 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.239 V. Piezo Error = -9.9 V.
17-03-17 17:44:39.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.2 um, Read 10 ADC samples: Avg = 29085 (-126.4 uncal um), Error = 0.8 uncal um, Median = 29084 (-126.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29080 (-126.4 uncal um), Max = 29093 (-126.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:44:39.458 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29085, posNoise = 8, negNoise = 5
17-03-17 17:44:39.458 -07 000000610 INF: Z Motor: After move to -0.127160, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:44:39.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:44:39.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:44:39.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:44:39.458 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:44:39.458 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:44:39.458 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:44:39.458 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:44:39.458 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:44:39.458 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:44:39.458 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:44:39.458 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:44:39.458 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:44:39.458 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:44:39.468 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:44:39.468 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:44:39.468 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:44:39.468 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:44:39.468 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:44:39.468 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:44:39.468 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:44:39.478 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:44:39.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27955 150\n [Camera]
17-03-17 17:44:39.678 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:44:40.068 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:44:40.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:44:40.068 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:40.068 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:40.068 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:44:40.068 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:44:40.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:44:40.068 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:40.068 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:40.068 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 17:44:40.258 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27955 777
17-03-17 17:44:40.408 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:44:40.448 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:44:40.448 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:44:40.448 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:40.448 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:44:40.448 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:44:40.448 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:40.448 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:44:40.448 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:44:40.448 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:44:40.458 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:44:40.598 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:44:40.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:44:40.598 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:44:40.718 -07 000000569 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:44:40.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:44:40.718 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:44:40.718 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:44:40.718 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:44:40.718 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:44:40.718 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 17:44:40.788 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:44:40.788 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:44:40.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27955 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-17 17:44:41.098 -07 000000569 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:44:41.108 -07 000000569 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:44:41.108 -07 000000569 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:41.108 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:44:41.108 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:44:41.108 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:44:41.108 -07 000000569 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:44:41.108 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:44:41.108 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 17:44:41.108 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 17:44:41.118 -07 000000569 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:44:41.148 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-17 17:44:41.148 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 17:44:41.188 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 17:44:41.218 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 17:44:41.218 -07 000000610 INF: Imaging Cycle 4: ScanTilesCommand Cycle 4 time end. Duration was 159154 ms.
17-03-17 17:44:41.218 -07 000000610 INF: =================== Cycle #4 ===================
17-03-17 17:44:41.218 -07 000000610 INF: ===================  ===================
17-03-17 17:44:41.218 -07 000000480 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 17:44:41.228 -07 000000551 INF: FPGA: Recv EXLED1ADCR 25
17-03-17 17:44:41.228 -07 000000480 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:44:41.228 -07 000000480 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-17 17:44:41.228 -07 000000480 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 4, FrontChillerTemperature: 3.988112, FrontChillerHeatSinkTemperature: 0.093309, AmbientTemperature: 18.6837, FlowCellCompartmentTemperature: 21.99836, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.42499, GreenLEDSensorTemperature: 26.12161, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-17 17:44:41.228 -07 000000610 WRN: Offset file 'D:\Illumina\MiSeqFGxTemp\170317_M03814_0172_000000000-B2K79\Data\Intensities\Offsets\offsets.txt' does not exist.
17-03-17 17:44:41.228 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.